Citrus Sinensis ID: 015246
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 410 | 2.2.26 [Sep-21-2011] | |||||||
| P0C043 | 463 | Putative pentatricopeptid | yes | no | 0.995 | 0.881 | 0.514 | 1e-120 | |
| Q56XR6 | 468 | Pentatricopeptide repeat- | yes | no | 0.985 | 0.863 | 0.481 | 1e-110 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.995 | 0.677 | 0.296 | 4e-52 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.953 | 0.653 | 0.286 | 1e-49 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.863 | 0.322 | 0.318 | 2e-49 | |
| Q9CAN6 | 590 | Pentatricopeptide repeat- | no | no | 0.973 | 0.676 | 0.297 | 8e-49 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.973 | 0.546 | 0.291 | 3e-48 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.985 | 0.641 | 0.270 | 1e-47 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.985 | 0.639 | 0.268 | 4e-47 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.848 | 0.566 | 0.306 | 2e-46 |
| >sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/410 (51%), Positives = 289/410 (70%), Gaps = 2/410 (0%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LI YC+FV + Y + RMR+AGI PDV TYNSLIAGA R +L L L DEMLE G
Sbjct: 54 LISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWG 113
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRV-FQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
I PD+WSYN+LM C F+LGK +EA RV ++D+ L P T+N++L+ LCK Y DNA
Sbjct: 114 IYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNA 173
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
L +F+ +Q F PEL+TYNILI GLCK+ R+ TA+W+L EL SG+ PNA+TYTTI+K
Sbjct: 174 LELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKL 232
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240
F+ R+ + GL++ MKR+GYT+DG+ Y V++A +K GR KEA +YM+++V G + D
Sbjct: 233 YFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHD 292
Query: 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 300
IVSYNTL+NLY K+G L+A LL E+E++G + D+YTHTI+++GL + G + A H
Sbjct: 293 IVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFV 352
Query: 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPS 360
M ++G NL NC+VD L K G +D A+ FESMEVKD +TY+S+VHNLCK R
Sbjct: 353 SMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHNLCKDMRFVC 412
Query: 361 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410
ASKLLLSC G++I SA++AV+ GLR SGC EA+K ++++++ + +
Sbjct: 413 ASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEARKAKAEMKLTLVGN 462
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XR6|PP421_ARATH Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/407 (48%), Positives = 280/407 (68%), Gaps = 3/407 (0%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LI Y +F+ D Y + RMREAGI PDV TYNSLI+GA +N +L+ L L DEML G
Sbjct: 54 LIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSG 113
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVF-QDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
+ PD+WSYN+LM C F+LG+ EA ++ +D+ L P T+NI+L+ LCK+ +TDNA
Sbjct: 114 LSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNA 173
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
+ +F+ L K PEL+TYNILI GLCK+ R+ + W+++EL SG+ PNA+TYTT++K
Sbjct: 174 IELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKM 232
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-L 239
F+ ++ + GL++ MK++GYTFDGF C V++A +K GR +EA + M ++V G +
Sbjct: 233 YFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTRSQ 292
Query: 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299
DIVSYNTL+NLY K+G L+A LL+E+E +G + D YTHTI+++GL GN GA HL
Sbjct: 293 DIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGAEKHL 352
Query: 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLP 359
+ ++G ++ NC++D L K G +D A+ +F SMEV+D FTY+S+VHNLCK RL
Sbjct: 353 ACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASMEVRDEFTYTSVVHNLCKDGRLV 412
Query: 360 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406
ASKLLLSC G++I SA++AV+ G+R + + A+K KI+ A
Sbjct: 413 CASKLLLSCYNKGMKIPSSARRAVLSGIRETVSYQAARKTHIKIKAA 459
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (522), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 215/415 (51%), Gaps = 7/415 (1%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LI+ +C+ D +L+RMR SPD VTYN +I L +L +L+++L
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
P V +Y L+ G DEA ++ +M+ L P T+N ++ G+CK D A
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
M R L+ G P++++YNIL++ L G+ ++ ++ PN +TY+ ++
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 343
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
R+ K + + +L MK KG T D + Y +IAAF + GRL A +++E M++DG DI
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN-IKGARLHLE 300
V+YNT++ CK GK + A + ++ + G + ++ + L +G+ I+ + LE
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463
Query: 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDS-FTYSSMVHNLCKAK 356
M+ G D + YN ++ L ++G +D A + M E S TY+ ++ CKA
Sbjct: 464 MMSN-GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAH 522
Query: 357 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK-IRMAKISH 410
R+ A +L S + +G R ++ +++G+ +G R EA ++ + +R+ IS
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISE 577
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 213/402 (52%), Gaps = 11/402 (2%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60
++I YC+ + ++L+RM +SPDVVTYN+++ + L ++++LD ML+
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
PDV +Y L+ + A ++ +M TP T+N+++NG+CK D A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
++ + G P ++T+NI+++ +C GR A +L ++ G +P+ +T+ ++
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN- 352
Query: 181 CFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 238
F RK LG ++IL M + G + Y ++ F K ++ A +Y+E+MV+ G
Sbjct: 353 -FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411
Query: 239 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 298
DIV+YNT++ CK+GK+E A +L+++ +G T+ +IDGL KAG A
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVHNLCK 354
L+ M + Y+ +V L ++GK+D AI F E ++ T++S++ LCK
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531
Query: 355 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREA 396
+++ A L+ + G + +++ +++GL + G +EA
Sbjct: 532 SRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 204/393 (51%), Gaps = 39/393 (9%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60
MLI C+ GY +L MR+ I P+ VTYN+LI G + + + LL+EML
Sbjct: 268 MLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSF 327
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
G+ P+ ++N+L+ G EA ++F M LTP ++ ++L+GLCKN D A
Sbjct: 328 GLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLA 387
Query: 121 ----LRMFR---------------GLQKHGFV----------------PELVTYNILIKG 145
+RM R GL K+GF+ P++VTY+ LI G
Sbjct: 388 RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 447
Query: 146 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 205
CK GR +TA+ I+ + G +PN I Y+T++ C R K + I AM +G+T D
Sbjct: 448 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507
Query: 206 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLD 265
F + ++ + K G++ EA ++M M +DG+ + VS++ LIN Y G+ A+ + D
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567
Query: 266 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 325
EM K G +T+ L+ GLCK G+++ A L+ ++ + + YN ++ + K G
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 627
Query: 326 KIDHAINVFESME----VKDSFTYSSMVHNLCK 354
+ A+++F M + DS+TY+S++ LC+
Sbjct: 628 NLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR 660
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 202/404 (50%), Gaps = 5/404 (1%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60
+ I+ +C+ IL +M + G P +VT NSL+ G + +S ++ L+D+M+EM
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
G PD ++ +L+H LFQ K EA + + M+ P T+ ++NGLCK D A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
L + ++K ++V YN +I GLCK + A + ++ G P+ TY ++ C
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV-TDGVQL 239
++ +LS M K D + +I AFVK G+L EA ++MV +
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354
Query: 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299
D+V+YNTLI +CK ++E + EM ++G + T+T LI G +A + A++
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 414
Query: 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKA 355
+ M G ++ YN ++D L +G ++ A+ VFE M+ +D TY++M+ LCKA
Sbjct: 415 KQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA 474
Query: 356 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 399
++ L S GV+ ++ G G + EA +
Sbjct: 475 GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 518
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 209/408 (51%), Gaps = 9/408 (2%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60
+++ A+C D+ ++L M + G P+ V Y +LI ++ + ++ +L LL+EM M
Sbjct: 222 VVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLM 281
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
G PD ++N ++ L + + +EA ++ M+ P T+ ++NGLCK D A
Sbjct: 282 GCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA 341
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMK 179
+F + K PE+V +N LI G GRL A+ +L ++ S G P+ TY +++
Sbjct: 342 KDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIY 397
Query: 180 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239
++ L LE+L M+ KG + + Y ++ F K+G++ EA + + +M DG++
Sbjct: 398 GYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKP 457
Query: 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299
+ V +N LI+ +CKE ++ A + EM ++G + D YT LI GLC+ IK A L
Sbjct: 458 NTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLL 517
Query: 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKA 355
M G +N YN +++ + G+I A + M + D TY+S++ LC+A
Sbjct: 518 RDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRA 577
Query: 356 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403
+ A L L+ G + +++GL SG EA + Q ++
Sbjct: 578 GEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEM 625
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 120/443 (27%), Positives = 211/443 (47%), Gaps = 39/443 (8%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60
+LI+ +C+ +L +M + G P++VT +SL+ G + +S ++ L+D+M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 180
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
G P+ ++N+L+H LF K EA + M+ P T+ +++NGLCK TD A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
+ +++ P ++ YN +I GLCK + A + KE+ G PN +TY++++ C
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL- 239
++ +LS M + D F + +I AFVK G+L EA ++MV +
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360
Query: 240 ----------------------------------DIVSYNTLINLYCKEGKLEAAYLLLD 265
D+V+YNTLI +CK ++E +
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420
Query: 266 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 325
EM ++G + T+ ILI GL +AG+ A+ + M G N+ YN ++D L K+G
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480
Query: 326 KIDHAINVFESMEVKDS----FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 381
K++ A+ VFE ++ +TY+ M+ +CKA ++ L + GV+ A
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540
Query: 382 AVVDGLRHSGCRREAKKIQSKIR 404
++ G G + EA + +++
Sbjct: 541 TMISGFCRKGSKEEADALFKEMK 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 119/443 (26%), Positives = 211/443 (47%), Gaps = 39/443 (8%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60
+ I+ +C+ +L +M + G PD+VT +SL+ G + +S ++ L+D+M+EM
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
G PD +++ +L+H LF K EA + M+ P T+ ++NGLCK D A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
L + + ++K ++V YN +I GLCK + A + E+ + G P+ TY++++ C
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240
++ +LS M + + + +I AFVK G+L EA ++M+ + D
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Query: 241 I-----------------------------------VSYNTLINLYCKEGKLEAAYLLLD 265
I V+Y+TLI +CK ++E L
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422
Query: 266 EMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 325
EM ++G + T+T LI G +A + A++ + M +G N+ YN ++D L K+G
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482
Query: 326 KIDHAINVFESME----VKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 381
K+ A+ VFE ++ D +TY+ M+ +CKA ++ +L + GV A
Sbjct: 483 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYN 542
Query: 382 AVVDGLRHSGCRREAKKIQSKIR 404
++ G G + EA + K++
Sbjct: 543 TMISGFCRKGSKEEADSLLKKMK 565
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 185/352 (52%), Gaps = 4/352 (1%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
+I+ C+ D +LN+M + I DVV Y+++I + + +L+L EM G
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
I PDV++Y+SL+ CL G+ +A+R+ DM+ + P TFN +++ K A
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
++F + + P +VTYN LI G C RL A+ I + P+ +TY T++
Sbjct: 331 KLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
+ +K G+E+ M R+G + Y T+I F + A +QMV+DGV +I
Sbjct: 391 CKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNI 450
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 301
++YNTL++ CK GKLE A ++ + ++K E D YT+ I+ +G+CKAG ++
Sbjct: 451 MTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCS 510
Query: 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 349
++ G ++ AYN ++ K G + A +F M+ + DS TY++++
Sbjct: 511 LSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLI 562
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 410 | ||||||
| 255584082 | 487 | pentatricopeptide repeat-containing prot | 0.987 | 0.831 | 0.660 | 1e-164 | |
| 225454807 | 457 | PREDICTED: putative pentatricopeptide re | 0.902 | 0.809 | 0.652 | 1e-161 | |
| 147832566 | 457 | hypothetical protein VITISV_010038 [Viti | 0.929 | 0.833 | 0.662 | 1e-154 | |
| 449467965 | 456 | PREDICTED: putative pentatricopeptide re | 0.980 | 0.881 | 0.625 | 1e-151 | |
| 356506793 | 461 | PREDICTED: putative pentatricopeptide re | 0.985 | 0.876 | 0.614 | 1e-150 | |
| 224089585 | 454 | predicted protein [Populus trichocarpa] | 0.980 | 0.885 | 0.619 | 1e-149 | |
| 297737331 | 441 | unnamed protein product [Vitis vinifera] | 0.958 | 0.891 | 0.616 | 1e-147 | |
| 357503117 | 457 | Pentatricopeptide repeat-containing prot | 0.997 | 0.894 | 0.595 | 1e-145 | |
| 449451938 | 460 | PREDICTED: putative pentatricopeptide re | 0.990 | 0.882 | 0.504 | 1e-123 | |
| 68566156 | 463 | RecName: Full=Putative pentatricopeptide | 0.995 | 0.881 | 0.514 | 1e-118 |
| >gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 270/409 (66%), Positives = 338/409 (82%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LIDAY +FVSF+A Y++LNRMREA ISPDVVTYNSLIAGA RN LL SL+L DEML MG
Sbjct: 78 LIDAYSRFVSFNAAYSLLNRMREASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMG 137
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
I PDVWSYN+LMHC F+LGK +EAN V + + L+PC TFNIM+NGLCKN +T NAL
Sbjct: 138 IVPDVWSYNTLMHCFFKLGKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNAL 197
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
+FR L++HGFVP+L+TYNILI GLCK RLR AR +LKEL SG+ PNAITYTT+MK C
Sbjct: 198 MLFRSLKQHGFVPQLITYNILINGLCKDRRLRAARSMLKELETSGYVPNAITYTTVMKFC 257
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
FR+R++K GLEIL M KGYTFDGF YCTV+ +K GRL+EAT+YM QM+ +G++ D+
Sbjct: 258 FRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDL 317
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 301
SYNTLINLYCK+G LEAAY LLDE+EK+G +CD+YTHTILI+ +CKAGNI GAR H+++
Sbjct: 318 ASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQCDEYTHTILINWMCKAGNILGARRHMQH 377
Query: 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSA 361
MN +GFDS L A NC+VD L K+G+IDHA+ +FESM+++DSFTYSS+VHNLCK R A
Sbjct: 378 MNMMGFDSCLVALNCMVDGLCKNGQIDHAVKLFESMKMRDSFTYSSLVHNLCKNGRFHRA 437
Query: 362 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410
SKLLLSCL+SG++IL SAQ+ V+ GLR+SG ++EA+K++SKI++A++ H
Sbjct: 438 SKLLLSCLRSGMKILPSAQRVVISGLRYSGFQKEARKLKSKIKLARMLH 486
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454807|ref|XP_002274300.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 267/409 (65%), Positives = 332/409 (81%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
L+ AY +FV DA Y++++RM+EAGISPDV+TYNSLIA AT+ LLS SLDL +EML G
Sbjct: 48 LLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTG 107
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
I PDVWSYNSLMHC F+LGKPDEANRVFQD+I +L P ++TFNIM+NGLC N YT AL
Sbjct: 108 IRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYAL 167
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
++R LQ+ GFVPELVTYNILI GLCK+ +L AR IL+ELG+SG+ P+AITYTT+MKCC
Sbjct: 168 SLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCC 227
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
FR+R+++ G EI S MK KGY FD F YC VIAA K GRL+EA D MEQM + LDI
Sbjct: 228 FRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARSDIDLDI 287
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 301
VSYNT++NLYC+ GKLEA Y LLDE+E+ G ECD+YTHTILIDGLCKAGN++GA HL+
Sbjct: 288 VSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGNVEGALRHLKN 347
Query: 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSA 361
M K+GFDS L A NC++D L K G++DHAI +F SMEVKDSFTYSSMVHNLCKA+R A
Sbjct: 348 MTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVKDSFTYSSMVHNLCKARRYRHA 407
Query: 362 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410
S+LLL+CL+ G++IL++ Q++V+DGL +SG EA++++SKIR+A+I H
Sbjct: 408 SRLLLACLRGGMKILRANQRSVIDGLCYSGYTSEARRLKSKIRLARILH 456
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147832566|emb|CAN63846.1| hypothetical protein VITISV_010038 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 255/385 (66%), Positives = 313/385 (81%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
L+ AY +FV DA Y++++RM+EAGISPDV+TYNSLIA AT+ LLS SLDL +EML G
Sbjct: 48 LLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTG 107
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
I PDVWSYNSLMHC F+LGKPDEANRVFQD+I +L P ++TFNIM+NGLC N YT AL
Sbjct: 108 IRPDVWSYNSLMHCFFKLGKPDEANRVFQDIILTNLLPSSSTFNIMINGLCNNGYTGYAL 167
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
++R LQ+ GFVPELVTYNILI GLCK+ +L AR IL+ELG+SG+ P+AITYTT+MKCC
Sbjct: 168 SLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCC 227
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
FR+R+++ G EI S MK KGY FD F YC VIAA K GRL+EA D MEQM + LDI
Sbjct: 228 FRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARSDIDLDI 287
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 301
VSYNT++NLYC+ GKLEA Y LLDE+E+ G ECD+YTHTILIDGLCKAGN++GA HL+
Sbjct: 288 VSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGNVEGALRHLKN 347
Query: 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSA 361
M K+GFDS L A NC++D L K G++DHAI +F SMEVKDSFTYSSMVHNLCKA+R A
Sbjct: 348 MTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVKDSFTYSSMVHNLCKARRYRHA 407
Query: 362 SKLLLSCLKSGVRILKSAQKAVVDG 386
S+LLL+CL+ G++IL++ Q++V+DG
Sbjct: 408 SRLLLACLRGGMKILRANQRSVIDG 432
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449467965|ref|XP_004151692.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Cucumis sativus] gi|449468117|ref|XP_004151768.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Cucumis sativus] gi|449532400|ref|XP_004173169.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 254/406 (62%), Positives = 315/406 (77%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LID YC+F DA Y++L RMREAGISPDV+TYNSLIAGATRN L SLDL +EML+ G
Sbjct: 48 LIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSG 107
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
I PD+WSYN+LMHC F LGKPDEA RVF+D+I DL+P TFN M+NGLCK+ YT NA+
Sbjct: 108 ITPDIWSYNTLMHCFFILGKPDEAYRVFKDIILKDLSPHPVTFNTMINGLCKHGYTSNAI 167
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
+FR LQ+HGF+P+LVTYNILI GLCK RLR A +L E DSG PNA+TYTT+MK C
Sbjct: 168 MLFRNLQRHGFIPQLVTYNILINGLCKVDRLRAAIRMLNEAMDSGLEPNAVTYTTLMKSC 227
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
FR+R+Y+ G EI S MK KGY FDGF YCTV AF+K+GR +EA MEQM+ + V +DI
Sbjct: 228 FRSRQYERGFEIFSKMKNKGYAFDGFAYCTVSGAFLKLGRFEEAKFCMEQMIKNDVGIDI 287
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 301
YNT INLYCKEGKLEAAY L DE+E +G ECD YTH+I+ +GLC+ GNI+GA HL
Sbjct: 288 TFYNTFINLYCKEGKLEAAYKLFDEIEPRGLECDVYTHSIITNGLCRVGNIEGAMQHLNC 347
Query: 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSA 361
+ GF SNL A NC++DRL K G+ID AI +FESME +DSFTY+S+VHNLCKA+R A
Sbjct: 348 VYTTGFASNLVALNCLIDRLCKAGQIDRAIRLFESMETRDSFTYTSLVHNLCKARRFRCA 407
Query: 362 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407
SKLL+SC + G+++LK+ ++AV+DGL SG EA+K++ K+R+A+
Sbjct: 408 SKLLISCSRDGMKVLKATRRAVIDGLCSSGFTSEARKLKFKLRLAR 453
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506793|ref|XP_003522160.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 250/407 (61%), Positives = 325/407 (79%), Gaps = 3/407 (0%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LIDAYC+F + D Y++L RM +AGI PDVV++N+LI+GA R SL S SLDL DEML+ G
Sbjct: 54 LIDAYCRFATLDVAYSVLARMHDAGIPPDVVSFNTLISGAVRKSLFSKSLDLFDEMLKRG 113
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD-LTPCTATFNIMLNGLCKNRYTDNA 120
I PD WS+N LM+CLFQLGKPDEANRVF++++ D + P AT+NIM+NGLCKN Y NA
Sbjct: 114 INPDAWSHNILMNCLFQLGKPDEANRVFKEIVLRDEVHP--ATYNIMINGLCKNGYVGNA 171
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
L +FR LQ+HGFVP+++TYN LI GLCKA RL+ AR +LKE G++G+ PNA+TYTT+M C
Sbjct: 172 LSLFRNLQRHGFVPQVLTYNALINGLCKARRLKDARRVLKEFGETGNEPNAVTYTTVMTC 231
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240
CFR R ++ GLEILS M+ G+TFDGF YCTVIAA +K GR++EA + +E MV+ GV+ D
Sbjct: 232 CFRCRLFEEGLEILSEMRSLGFTFDGFAYCTVIAAMIKTGRMQEAEEIVEMMVSSGVRPD 291
Query: 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 300
+VSYNTLINLYC++G+L+ A LLDE+E +G ECD+YTHTI++DGLCKAGN GA+ HL
Sbjct: 292 LVSYNTLINLYCRQGRLDDALRLLDEIEGEGLECDQYTHTIIVDGLCKAGNFDGAQRHLN 351
Query: 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPS 360
YMN +GF SNL A+NC +D LGK G IDHA+ +FE MEVKDSFTY+ +VHNLC+A+R
Sbjct: 352 YMNSLGFGSNLVAFNCFLDGLGKAGHIDHALRLFEVMEVKDSFTYTIVVHNLCRARRFLC 411
Query: 361 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407
ASK+L+SCLK G ++L++ Q+AV+ GLR G EA+K++ IR+A+
Sbjct: 412 ASKVLVSCLKCGYQVLRATQRAVIVGLRSIGYANEARKVKLTIRLAQ 458
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089585|ref|XP_002308767.1| predicted protein [Populus trichocarpa] gi|222854743|gb|EEE92290.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/405 (61%), Positives = 326/405 (80%), Gaps = 3/405 (0%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LI+AY +FVSFDA Y++L+RM+EA I PD+VTYNSLIAGA R+ LLS +DL +EMLE+G
Sbjct: 48 LINAYSRFVSFDAAYSVLDRMKEASIKPDIVTYNSLIAGAMRHCLLSNCMDLFEEMLELG 107
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
I PD+WSYN+LMHC F+L +PD+A RVF D+I L+P AT+N MLNGLCK + +NAL
Sbjct: 108 IKPDIWSYNTLMHCFFKLERPDDAYRVFTDIILCYLSPSQATYNTMLNGLCKCGFVENAL 167
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
+FR L++HGFVP LVTYNILI GLCKA +L+TARW+LKELG SG PN ITYTT+M+CC
Sbjct: 168 MLFRKLKRHGFVPSLVTYNILINGLCKAWKLKTARWMLKELGASGLVPNVITYTTVMRCC 227
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
FR+R+++ GLEI M KGYTFDGF YCTV+ A VK R++EA+ YME+MV + LD+
Sbjct: 228 FRSRRFEQGLEIFEEMIDKGYTFDGFAYCTVVGALVKTCRIEEASHYMERMVNTDIGLDM 287
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 301
SYNTLINLYCK GKLE A+ +LD+MEK+GFE D+YT+TIL++GLC+ G+++GA +EY
Sbjct: 288 ASYNTLINLYCKGGKLEMAHGVLDKMEKEGFERDEYTNTILMNGLCEEGDVEGA---MEY 344
Query: 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSA 361
MN GF+SNL A N +VDR K +ID+A +F+SM+++DSFTYSS++HNLCK R A
Sbjct: 345 MNVAGFNSNLVALNTMVDRWCKADQIDYAFKIFDSMDMRDSFTYSSLIHNLCKVGRFRCA 404
Query: 362 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406
SKLLLSC++S RIL SA++AV D LRHSG +REAK+++S+I++A
Sbjct: 405 SKLLLSCVRSRTRILPSAKRAVFDCLRHSGHQREAKRLKSEIKLA 449
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737331|emb|CBI26532.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/409 (61%), Positives = 316/409 (77%), Gaps = 16/409 (3%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
L+ AY +FV DA Y++++RM+EAGISPDV+TYNSLIA AT+ LLS SLDL +EML G
Sbjct: 48 LLSAYSRFVGIDAAYSVIHRMKEAGISPDVITYNSLIAAATKRCLLSRSLDLFEEMLRTG 107
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
I PDVWSYNSLMH + I +L P ++TFNIM+NGLC N YT AL
Sbjct: 108 IRPDVWSYNSLMHYI----------------ILTNLLPSSSTFNIMINGLCNNGYTGYAL 151
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
++R LQ+ GFVPELVTYNILI GLCK+ +L AR IL+ELG+SG+ P+AITYTT+MKCC
Sbjct: 152 SLYRYLQRQGFVPELVTYNILINGLCKSRKLNAARRILRELGESGNVPDAITYTTVMKCC 211
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
FR+R+++ G EI S MK KGY FD F YC VIAA K GRL+EA D MEQM + LDI
Sbjct: 212 FRSRQFEQGFEIFSEMKSKGYAFDAFSYCAVIAALTKTGRLEEANDIMEQMARSDIDLDI 271
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 301
VSYNT++NLYC+ GKLEA Y LLDE+E+ G ECD+YTHTILIDGLCKAGN++GA HL+
Sbjct: 272 VSYNTVMNLYCRNGKLEATYKLLDEIEEHGLECDEYTHTILIDGLCKAGNVEGALRHLKN 331
Query: 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSA 361
M K+GFDS L A NC++D L K G++DHAI +F SMEVKDSFTYSSMVHNLCKA+R A
Sbjct: 332 MTKMGFDSTLVAQNCVIDGLCKVGQLDHAIKMFASMEVKDSFTYSSMVHNLCKARRYRHA 391
Query: 362 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410
S+LLL+CL+ G++IL++ Q++V+DGL +SG EA++++SKIR+A+I H
Sbjct: 392 SRLLLACLRGGMKILRANQRSVIDGLCYSGYTSEARRLKSKIRLARILH 440
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357503117|ref|XP_003621847.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496862|gb|AES78065.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/410 (59%), Positives = 321/410 (78%), Gaps = 1/410 (0%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LID YC+FV DA Y ILNRM+EAGI+PDVV+YNSL +GA R LL SLDL DEML+ G
Sbjct: 48 LIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLSSGAVRKCLLQKSLDLFDEMLQSG 107
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMI-CGDLTPCTATFNIMLNGLCKNRYTDNA 120
I PDVWSYN LMHC F+LGKP+EAN VF+D+ G++ P A++N+M+NGLCKN Y +NA
Sbjct: 108 IRPDVWSYNILMHCYFRLGKPEEANGVFRDIFERGEIYPSMASYNVMINGLCKNGYVNNA 167
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
L +FR L++ GFVPE++TYN +I GLCKA RL AR +L E D G PNAITYTT+MKC
Sbjct: 168 LMLFRNLRRRGFVPEVLTYNAMINGLCKARRLADARRVLNEFCDFGFEPNAITYTTVMKC 227
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240
CFR + + GLEILS M+RKG+TFDGF YCTV+AA VK GR++EA + E+M+++G+ D
Sbjct: 228 CFRCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEADEIAEKMMSNGLVPD 287
Query: 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 300
+ SYNT+INL+C++G+ + A L+DE+EKQG +CD+YTHTI+I GLCK GN +GA HL+
Sbjct: 288 LASYNTMINLFCRQGRFDEALRLVDEIEKQGMKCDQYTHTIIIHGLCKDGNFEGAEKHLD 347
Query: 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPS 360
YMN +GF NL A+N I+D LGK G ID A+ VF+SMEVKDSFTY+S++HNLC+AK+
Sbjct: 348 YMNTLGFGFNLVAFNSILDCLGKAGDIDKAVKVFDSMEVKDSFTYTSLLHNLCRAKKFRI 407
Query: 361 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410
ASKLL++ ++ G +IL++ Q+AV+DGL SG EA+K++ KI+ A++ H
Sbjct: 408 ASKLLVASIEDGFQILRATQRAVIDGLTTSGLVYEARKVKLKIQRARLVH 457
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451938|ref|XP_004143717.1| PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/414 (50%), Positives = 289/414 (69%), Gaps = 8/414 (1%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60
+LI+ YCQF DA Y++ ++MR+AGI+P+V Y SL+A A+RNS L L+L EML++
Sbjct: 47 ILINGYCQFSDMDAAYSVFHKMRDAGITPNVFIYTSLMAAASRNSSLEQCLNLFHEMLQL 106
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
GI PDVWSY +L HC ++GKPDEAN +F D I D +P ATF++M+ G C YT NA
Sbjct: 107 GITPDVWSYTTLTHCFLKVGKPDEANSIFLDFILKDHSPNPATFDVMIFGFCSCGYTSNA 166
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT-------ARWILKELGDSGHAPNAIT 173
+ +FR LQ HG VP+ VTY+IL+ GLCKA RL A + E DSG P++ T
Sbjct: 167 ITLFRNLQSHGLVPKFVTYDILLTGLCKAARLNVSVSMFNEAMSMFNEAIDSGFEPDSTT 226
Query: 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 233
Y +MKCCF+ R+Y+ G EI MK KG F+GFGY T I A +++GRL+EA +M +M+
Sbjct: 227 YIALMKCCFKFREYQHGFEIFFEMKNKGLAFNGFGYYTAIGALLRLGRLEEAKFFMVEMI 286
Query: 234 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 293
+GV ++V YNT++NLYCK GKLEAA+ +LD++E +G +C+ YTH I+ DGLCK GN +
Sbjct: 287 KNGVVFNLVFYNTVVNLYCKHGKLEAAHKMLDKIESRGLQCNDYTHAIITDGLCKVGNFE 346
Query: 294 GARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL 352
GAR HL Y+ GF +SN+ A +C++DRL K G+ID A+ +FE ME KD + Y+S++HNL
Sbjct: 347 GARRHLNYIYPTGFTNSNVVASSCLIDRLCKAGQIDQAMQLFELMETKDPYVYTSLMHNL 406
Query: 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406
CKA+R ASKLLL CL+SG+ + +S Q AV+ GL G EA+K++ I ++
Sbjct: 407 CKARRFLCASKLLLDCLRSGISVFRSTQCAVIFGLCSFGFTSEARKLKPFIHLS 460
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|68566156|sp|P0C043.1|PP318_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At4g17915 | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/410 (51%), Positives = 289/410 (70%), Gaps = 2/410 (0%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LI YC+FV + Y + RMR+AGI PDV TYNSLIAGA R +L L L DEMLE G
Sbjct: 54 LISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWG 113
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRV-FQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
I PD+WSYN+LM C F+LGK +EA RV ++D+ L P T+N++L+ LCK Y DNA
Sbjct: 114 IYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNA 173
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
L +F+ +Q F PEL+TYNILI GLCK+ R+ TA+W+L EL SG+ PNA+TYTTI+K
Sbjct: 174 LELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKL 232
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240
F+ R+ + GL++ MKR+GYT+DG+ Y V++A +K GR KEA +YM+++V G + D
Sbjct: 233 YFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHD 292
Query: 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE 300
IVSYNTL+NLY K+G L+A LL E+E++G + D+YTHTI+++GL + G + A H
Sbjct: 293 IVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFV 352
Query: 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPS 360
M ++G NL NC+VD L K G +D A+ FESMEVKD +TY+S+VHNLCK R
Sbjct: 353 SMGEMGIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHNLCKDMRFVC 412
Query: 361 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410
ASKLLLSC G++I SA++AV+ GLR SGC EA+K ++++++ + +
Sbjct: 413 ASKLLLSCYNKGIKIPTSARRAVLSGLRMSGCYGEARKAKAEMKLTLVGN 462
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 410 | ||||||
| TAIR|locus:2178550 | 468 | AT5G46680 "AT5G46680" [Arabido | 0.985 | 0.863 | 0.442 | 2.1e-93 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.992 | 0.676 | 0.280 | 6.9e-47 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.970 | 0.665 | 0.266 | 7.1e-45 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.846 | 0.565 | 0.303 | 2.5e-42 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.965 | 0.671 | 0.279 | 6.6e-42 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.870 | 0.473 | 0.281 | 3e-41 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.863 | 0.561 | 0.279 | 7.1e-41 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.982 | 0.635 | 0.262 | 3.1e-40 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.841 | 0.472 | 0.282 | 8.8e-40 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.848 | 0.552 | 0.276 | 1.9e-39 |
| TAIR|locus:2178550 AT5G46680 "AT5G46680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 180/407 (44%), Positives = 262/407 (64%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXXG 61
LI Y +F+ D Y + RMREAGI PDV TYNSLI+GA +N G
Sbjct: 54 LIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSG 113
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVF-QDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
+ PD+WSYN+LM C F+LG+ EA ++ +D+ L P T+NI+L+ LCK+ +TDNA
Sbjct: 114 LSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNA 173
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
+ +F+ L K PEL+TYNILI GLCK+ R+ + W+++EL SG+ PNA+TYTT++K
Sbjct: 174 IELFKHL-KSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKM 232
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL- 239
F+ ++ + GL++ MK++GYTFDGF C V++A +K GR +EA + M ++V G +
Sbjct: 233 YFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTRSQ 292
Query: 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299
DIVSYNTL+NLY K+G L+A LL+E+E +G + D YTHTI+++GL GN GA HL
Sbjct: 293 DIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGAEKHL 352
Query: 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRXX 359
+ ++G ++ NC++D L K G +D A+ +F SMEV+D FTY+S+VHNLCK R
Sbjct: 353 ACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLFASMEVRDEFTYTSVVHNLCKDGRLV 412
Query: 360 XXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406
G++I SA++AV+ G+R + + A+K KI+ A
Sbjct: 413 CASKLLLSCYNKGMKIPSSARRAVLSGIRETVSYQAARKTHIKIKAA 459
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 116/414 (28%), Positives = 199/414 (48%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXXG 61
LI+ +C+ D +L+RMR SPD VTYN +I
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
P V +Y L+ G DEA ++ +M+ L P T+N ++ G+CK D A
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
M R L+ G P++++YNIL++ L G+ ++ ++ PN +TY+ ++
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 343
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
R+ K + + +L MK KG T D + Y +IAAF + GRL A +++E M++DG DI
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN-IKGARLHLE 300
V+YNT++ CK GK + A + ++ + G + ++ + L +G+ I+ + LE
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463
Query: 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVKDSF-TYSSMVHNLCKAK 356
M+ G D + YN ++ L ++G +D A + M E S TY+ ++ CKA
Sbjct: 464 MMSN-GIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAH 522
Query: 357 RXXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRREAKKIQSK-IRMAKIS 409
R G R ++ +++G+ +G R EA ++ + +R+ IS
Sbjct: 523 RIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAIS 576
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 109/409 (26%), Positives = 207/409 (50%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXX 60
++I YC+ + ++L+RM +SPDVVTYN+++ +
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
PDV +Y L+ + A ++ +M TP T+N+++NG+CK D A
Sbjct: 234 DCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
++ + G P ++T+NI+++ +C GR A +L ++ G +P+ +T+ ++
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN- 352
Query: 181 CFRNRKYKLG--LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 238
F RK LG ++IL M + G + Y ++ F K ++ A +Y+E+MV+ G
Sbjct: 353 -FLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCY 411
Query: 239 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 298
DIV+YNT++ CK+GK+E A +L+++ +G T+ +IDGL KAG A
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF---ESMEVK-DSFTYSSMVHNLCK 354
L+ M + Y+ +V L ++GK+D AI F E M ++ ++ T++S++ LCK
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531
Query: 355 AKRXXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403
+++ G + +++ +++GL + G +EA ++ +++
Sbjct: 532 SRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 107/353 (30%), Positives = 179/353 (50%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXXG 61
+I+ C+ D +LN+M + I DVV Y+++I + G
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
I PDV++Y+SL+ CL G+ +A+R+ DM+ + P TFN +++ K A
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
++F + + P +VTYN LI G C RL A+ I + P+ +TY T++
Sbjct: 331 KLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGF 390
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
+ +K G+E+ M R+G + Y T+I F + A +QMV+DGV +I
Sbjct: 391 CKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNI 450
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLHLE 300
++YNTL++ CK GKLE A ++ + ++K E D YT+ I+ +G+CKAG ++ G L
Sbjct: 451 MTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCS 510
Query: 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 349
K G ++ AYN ++ K G + A +F M+ + DS TY++++
Sbjct: 511 LSLK-GVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLI 562
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 112/401 (27%), Positives = 185/401 (46%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXX 60
+ I+ +C+ IL +M + G P +VT NSL+ G +
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 174
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
G PD ++ +L+H LFQ K EA + + M+ P T+ ++NGLCK D A
Sbjct: 175 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
L + ++K ++V YN +I GLCK + A + ++ G P+ TY ++ C
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL- 239
++ +LS M K D + +I AFVK G+L EA ++MV
Sbjct: 295 LCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP 354
Query: 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299
D+V+YNTLI +CK ++E + EM ++G + T+T LI G +A + A++
Sbjct: 355 DVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 414
Query: 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS----FTYSSMVHNLCKA 355
+ M G ++ YN ++D L +G ++ A+ VFE M+ +D TY++M+ LCKA
Sbjct: 415 KQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKA 474
Query: 356 KRXXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRREA 396
+ GV+ ++ G G + EA
Sbjct: 475 GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEA 515
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 3.0e-41, P = 3.0e-41
Identities = 102/362 (28%), Positives = 180/362 (49%)
Query: 1 MLIDAYCQFVSFDAGYTILNRM-REAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXX 59
+++ +C+ + + M + G PD T+N+L+ G +
Sbjct: 264 VIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQ 323
Query: 60 XGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 119
G PDV++YNS++ L +LG+ EA V MI D +P T T+N +++ LCK +
Sbjct: 324 EGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEE 383
Query: 120 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMK 179
A + R L G +P++ T+N LI+GLC R A + +E+ G P+ TY ++
Sbjct: 384 ATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLID 443
Query: 180 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239
K L +L M+ G Y T+I F K + +EA + ++M GV
Sbjct: 444 SLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSR 503
Query: 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299
+ V+YNTLI+ CK ++E A L+D+M +G + DKYT+ L+ C+ G+IK A +
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563
Query: 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-SFT---YSSMVHNLCKA 355
+ M G + ++ Y ++ L K G+++ A + S+++K + T Y+ ++ L +
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRK 623
Query: 356 KR 357
++
Sbjct: 624 RK 625
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 7.1e-41, P = 7.1e-41
Identities = 100/358 (27%), Positives = 184/358 (51%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXX 60
++++ C+ D + +LN+M + + P V+ YN++I G +
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
GI P+V +Y+SL+ CL G+ +A+R+ DMI + P TF+ +++ K A
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEA 345
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA-PNAITYTTIMK 179
+++ + K P +VTY+ LI G C RL A+ + E S H P+ +TY T++K
Sbjct: 346 EKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF-EFMVSKHCFPDVVTYNTLIK 404
Query: 180 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239
+ ++ + G+E+ M ++G + Y +I + G A + ++MV+DGV
Sbjct: 405 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPP 464
Query: 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLH 298
+I++YNTL++ CK GKLE A ++ + +++ E YT+ I+I+G+CKAG ++ G L
Sbjct: 465 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524
Query: 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAK 356
K G ++ AYN ++ + G + A +F+ M+ + S + L +A+
Sbjct: 525 CNLSLK-GVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRAR 581
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 3.1e-40, P = 3.1e-40
Identities = 107/407 (26%), Positives = 191/407 (46%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXXG 61
L++ YC ++++M E G PD +T+ +LI G ++ G
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
P++ +Y +++ L + G D A + M + FN +++ LCK R+ D+AL
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 280
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
+F+ ++ G P +VTY+ LI LC GR A +L ++ + PN +T+ ++
Sbjct: 281 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 340
Query: 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241
+ K+ ++ M ++ D F Y +++ F RL +A E MV+ D+
Sbjct: 341 VKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDV 400
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEY 301
V+YNTLI +CK ++E L EM +G D T+T LI GL G+ A+ +
Sbjct: 401 VTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 460
Query: 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM---EVK-DSFTYSSMVHNLCKAKR 357
M G ++ Y+ ++D L +GK++ A+ VF+ M E+K D + Y++M+ +CKA +
Sbjct: 461 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520
Query: 358 XXXXXXXXXXXXXXGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404
GV+ ++ GL +EA + K++
Sbjct: 521 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 8.8e-40, P = 8.8e-40
Identities = 101/358 (28%), Positives = 181/358 (50%)
Query: 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXXGIP-PD 65
C+F + ++NRM G +PD +TY L+ G + IP P+
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYR-----IPKPE 352
Query: 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALRMF 124
+ +N+L+H G+ D+A V DM+ + P T+N ++ G K AL +
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 125 RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 184
++ G P + +Y IL+ G CK G++ A +L E+ G PN + + ++ +
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472
Query: 185 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 244
+ +EI M RKG D + + ++I+ ++ +K A + M+++GV + V+Y
Sbjct: 473 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532
Query: 245 NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304
NTLIN + + G+++ A L++EM QG D+ T+ LI GLC+AG + AR E M +
Sbjct: 533 NTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592
Query: 305 IGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 357
G SN+ N +++ L + G ++ A+ + M ++ D T++S+++ LC+A R
Sbjct: 593 DGHAPSNISC-NILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR 649
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 1.9e-39, P = 1.9e-39
Identities = 98/354 (27%), Positives = 177/354 (50%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSXXXXXXXXXXXXXXX 60
++++ C+ D ++L +M + I P VV YN++I
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
GI P+V +YNSL+ CL G+ +A+R+ DMI + P TF+ +++ K A
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
+++ + K P++ TY+ LI G C RL A+ + + + PN +TY T++K
Sbjct: 346 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240
+ ++ G+E+ M ++G + Y T+I F + A +QMV+DGV D
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465
Query: 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK-GARLHL 299
I++Y+ L++ C GK+E A ++ + +++ E D YT+ I+I+G+CKAG ++ G L
Sbjct: 466 IMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 525
Query: 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMV 349
K G N+ Y ++ + G + A +F M+ + DS TY++++
Sbjct: 526 SLSLK-GVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI 578
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C043 | PP318_ARATH | No assigned EC number | 0.5146 | 0.9951 | 0.8812 | yes | no |
| Q56XR6 | PP421_ARATH | No assigned EC number | 0.4815 | 0.9853 | 0.8632 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 410 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 1e-21
Identities = 82/335 (24%), Positives = 139/335 (41%), Gaps = 23/335 (6%)
Query: 16 YTILNRMREAGI------SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSY 69
Y L EA + D V++ ++I+G +N L +L+ M + + PD +
Sbjct: 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 70 NSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK 129
S++ LG D ++ + L N ++ K + D AL +F
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH---- 448
Query: 130 HGFVPE--LVTYNILIKGLCKAGRLRTARWILKE-LGDSGHAPNAITYTTIMKCCFRNRK 186
+PE ++++ +I GL R A ++ L PN++T + C R
Sbjct: 449 --NIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL--KPNSVTLIAALSACARIGA 504
Query: 187 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNT 246
G EI + + R G FDGF ++ +V+ GR+ A + + D+VS+N
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNI 559
Query: 247 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM-NKI 305
L+ Y GK A L + M + G D+ T L+ ++G + + M K
Sbjct: 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619
Query: 306 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340
NL+ Y C+VD LG+ GK+ A N M +
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT 654
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 1e-18
Identities = 29/49 (59%), Positives = 41/49 (83%)
Query: 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 288
D+V+YNTLI+ YCK+GK+E A L +EM+K+G + + YT++ILIDGLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 78/350 (22%), Positives = 148/350 (42%), Gaps = 14/350 (4%)
Query: 54 LDEMLEMGIP--PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111
L E+LE G P +Y++L+ L V+ + P N +L
Sbjct: 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168
Query: 112 CKNRYTDNALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169
K +A R+F + PE L ++ +I GL AG R A + +E+ + G
Sbjct: 169 VKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222
Query: 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 229
T+ +++ + G ++ + + G D F C +I + K G +++A
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 230 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289
+ M + V++N+++ Y G E A L EM G D++T +I+I +
Sbjct: 283 DGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMV 349
++ A+ + + GF ++ A +VD K G+++ A NVF+ M K+ ++++++
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398
Query: 350 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 399
R A ++ + GV AV+ R+SG + +I
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 65/337 (19%), Positives = 139/337 (41%), Gaps = 2/337 (0%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60
ML+ D +L ++EAG+ D Y +LI+ ++ + ++ EM+
Sbjct: 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501
Query: 61 GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120
G+ +V ++ +L+ + G+ +A + M ++ P FN +++ ++ D A
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561
Query: 121 LRMFR--GLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 178
+ + H P+ +T L+K AG++ A+ + + + + YT +
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 179 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 238
C + + L I MK+KG D + ++ G L +A + ++ G++
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681
Query: 239 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 298
L VSY++L+ + A L ++++ T LI LC+ + A
Sbjct: 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 335
L M ++G N Y+ ++ + D +++
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 1e-14
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 13 DAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSL 72
D +I + M++ G+ PD V +++L+ A L + ++L + + GI SY+SL
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 73 MHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN-RYTDNALRMFRGLQKHG 131
M G C N + AL ++ ++
Sbjct: 691 M------------------------------------GACSNAKNWKKALELYEDIKSIK 714
Query: 132 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191
P + T N LI LC+ +L A +L E+ G PN ITY+ ++ R +GL
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 192 EILSAMKRKG 201
++LS K G
Sbjct: 775 DLLSQAKEDG 784
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 74/338 (21%), Positives = 144/338 (42%), Gaps = 31/338 (9%)
Query: 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLF-----QLGKPDEANRV 88
YN L+ R+ + +DLL++M + G+ + + H F + EA R
Sbjct: 377 YNRLL----RDGRIKDCIDLLEDMEKRGL----LDMDKIYHAKFFKACKKQRAVKEAFR- 427
Query: 89 FQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148
F +I P +TFN++++ ++ D ALR+ R +Q+ G + Y LI K
Sbjct: 428 FAKLI---RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484
Query: 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG 208
+G++ + E+ ++G N T+ ++ C R + M+ K D
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 209 YCTVIAAFVKIGRLKEATDYMEQMV--TDGVQLDIVSYNTLINLYCKEGKLEAA---YLL 263
+ +I+A + G + A D + +M T + D ++ L+ G+++ A Y +
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 264 LDEMEKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322
+ E +G E +TI ++ + G+ A + M K G + ++ +VD G
Sbjct: 605 IHEYNIKGTPEV----YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660
Query: 323 KDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAK 356
G +D A + + + + +YSS++ AK
Sbjct: 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 7e-14
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 99 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148
P T+N +++G CK + AL++F ++K G P + TY+ILI GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 80/358 (22%), Positives = 146/358 (40%), Gaps = 35/358 (9%)
Query: 9 FVSF----DAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPP 64
FV F A Y + +M E D+ ++N L+ G + +L L ML G+ P
Sbjct: 131 FVRFGELVHAWY-VFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 65 DVWSYNSLMH-CLFQLGKPDEA--NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121
DV+++ ++ C G PD A V ++ N ++ K +A
Sbjct: 186 DVYTFPCVLRTCG---GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 122 RMFRGLQKHGFVPELVTYNILIKG-----LCKAGRLRTARWILKELGDSGHAPNAITYTT 176
+F + + +++N +I G C G S P+ +T T+
Sbjct: 243 LVFDRMP----RRDCISWNAMISGYFENGECLEG----LELFFTMRELSVD-PDLMTITS 293
Query: 177 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236
++ C +LG E+ + + G+ D ++I ++ +G EA +M T
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK- 352
Query: 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI-KGA 295
D VS+ +I+ Y K G + A ME+ D+ T ++ G++ G
Sbjct: 353 ---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409
Query: 296 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLC 353
+LH E + G S + N +++ K ID A+ VF ++ KD +++S++ L
Sbjct: 410 KLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 5e-13
Identities = 66/353 (18%), Positives = 138/353 (39%), Gaps = 54/353 (15%)
Query: 18 ILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLF 77
+ + +G PD N ++ + +L + L DEM E + S+ +++ L
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLV 200
Query: 78 QLGKPDEANRVFQDMICGDLTPC-TATFNIMLN---------------------GLCKNR 115
G EA +F++M D + TF +ML G+ +
Sbjct: 201 DAGNYREAFALFREMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259
Query: 116 YT--------------DNALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGRLRTARWIL 159
+ ++A +F G+ PE V +N ++ G G A +
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLY 313
Query: 160 KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219
E+ DSG + + T++ +++ R + + + + R G+ D ++ + K
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 279
GR+++A + ++M + +++S+N LI Y G+ A + + M +G + T
Sbjct: 374 GRMEDARNVFDRM----PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
Query: 280 TILIDGLCKAGNI-KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 331
++ +G +G + Y C+++ LG++G +D A
Sbjct: 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 2e-12
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 64 PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 113
PDV +YN+L+ + GK +EA ++F +M + P T++I+++GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 60/270 (22%), Positives = 107/270 (39%), Gaps = 38/270 (14%)
Query: 22 MREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIP--PDVWSYNSLMHCLFQL 79
MR + PD V +N+LI+ ++ + + D+L EM P PD + +LM
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 80 GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY 139
G+ D A V+Q + ++ + I +N + D AL ++ ++K G P+ V +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 140 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE------- 192
+ L+ AG L A IL++ G ++Y+++M C + +K LE
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 193 ----------------------------ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 224
+LS MKR G + Y ++ A +
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 225 ATDYMEQMVTDGVQLDIVSYNTLINLYCKE 254
D + Q DG++ ++V + L C
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCITGL-CLR 801
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 75/318 (23%), Positives = 137/318 (43%), Gaps = 14/318 (4%)
Query: 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMH-CLFQLGKPDEANRVFQDMI 93
NS + + L +L LL+ M E+ +P D +Y +L C ++ +E +RV +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAV-EEGSRVCSRAL 113
Query: 94 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE--LVTYNILIKGLCKAGR 151
+ N ML+ + +A +F G +PE L ++N+L+ G KAG
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVF------GKMPERDLFSWNVLVGGYAKAGY 167
Query: 152 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 211
A + + +G P+ T+ +++ C G E+ + + R G+ D
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 271
+I +VK G + A ++M D +S+N +I+ Y + G+ L M +
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 272 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 331
+ D T T +I G+ + R Y+ K GF ++ N ++ G A
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 332 NVFESMEVKDSFTYSSMV 349
VF ME KD+ ++++M+
Sbjct: 344 KVFSRMETKDAVSWTAMI 361
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL 76
PDVVTYN+LI G + + +L L +EM + GI P+V++Y+ L+ L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 6e-11
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 134 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC 181
P++VTYN LI G CK G++ A + E+ G PN TY+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 1e-09
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 235 DGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 268
G++ D+V+YNTLI+ C+ G+++ A LLDEME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-08
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 207 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253
Y T+I + K G+++EA +M G++ ++ +Y+ LI+ CK
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 1e-07
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 131 GFVPELVTYNILIKGLCKAGRLRTARWILKE 161
G P++VTYN LI GLC+AGR+ A +L E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 2e-07
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 313 AYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK 354
YN ++D K GK++ A+ +F M+ + + +TYS ++ LCK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAG 40
LID YC+ + + N M++ GI P+V TY+ LI G
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 6e-07
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275
V+YNTLI+ CK G++E A L EM+++G E D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 272
V+YN+LI+ YCK GKLE A L EM+++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 64/291 (21%), Positives = 121/291 (41%), Gaps = 32/291 (10%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LI+ Y + D + + + E DV+++ S+IAG N+ +L +ML
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485
Query: 62 IPPDVWSYNSLMHCL----FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117
P V +L C GK A+ + + P N +L+ +
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRM 540
Query: 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 177
+ A F +K ++V++NIL+ G G+ A + + +SG P+ +T+ ++
Sbjct: 541 NYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 178 MKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236
+ C R+ GLE +M+ K T + Y V+ + G+L EA +++ +M
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---P 652
Query: 237 VQLDIVSYNTLINLYCK------EGKLEAAYLLLDEMEKQGFE---CDKYT 278
+ D + L+N C+ G+L A ++ + G+ C+ Y
Sbjct: 653 ITPDPAVWGALLNA-CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEM-LE 59
+L+ Y + NRM E+G++PD VT+ SL+ +R+ +++ L+ M +
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
Query: 60 MGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110
I P++ Y ++ L + GK EA M +TP A + +LN
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 53/256 (20%), Positives = 97/256 (37%), Gaps = 47/256 (18%)
Query: 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 157
+ T N L LC + + AL++ +Q+ + Y L + LC+ R
Sbjct: 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKR------ 100
Query: 158 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 217
+ + + LG+ + +AM ++ FV
Sbjct: 101 --------AVEEGSRVCSRALS-----SHPSLGVRLGNAM---------------LSMFV 132
Query: 218 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY 277
+ G L A +M + D+ S+N L+ Y K G + A L M G D Y
Sbjct: 133 RFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 278 THTILIDGLCKAGNI----KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 333
T + L G I +G +H + + GF+ +++ N ++ K G + A V
Sbjct: 189 TFPCV---LRTCGGIPDLARGREVHAHVV-RFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 334 FESMEVKDSFTYSSMV 349
F+ M +D ++++M+
Sbjct: 245 FDRMPRRDCISWNAMI 260
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-05
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 26 GISPDVVTYNSLIAGATRNSLLSCSLDLLDEM 57
G+ PDVVTYN+LI G R + +++LLDEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LI A C+ +L+ M+ G+ P+ +TY+ L+ + R LDLL + E G
Sbjct: 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784
Query: 62 IPPDVWSYNSLMH-CL---------------FQLGKPDEANR-------VFQDMICGDLT 98
I P++ + CL F G+P N+ V+++ I
Sbjct: 785 IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844
Query: 99 PCTATFNIMLNGLCKNRYTDNALR 122
P + +L L D LR
Sbjct: 845 PTMEVLSQVLGCLQLPH--DATLR 866
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 60 MGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDM 92
G+ PDV +YN+L+ L + G+ DEA + +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 1e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 136 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169
L TYN L+ L KAG A +L+E+ SG P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 1e-04
Identities = 52/261 (19%), Positives = 85/261 (32%), Gaps = 5/261 (1%)
Query: 79 LGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMF-RGLQKHGFVPELV 137
L A + + + L A L L AL + L+
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 138 TYNILIKGLCKAGRLRTAR-WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 196
+L L K GRL A + K L A + KY+ LE+L
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 197 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD--IVSYNTLINLYCKE 254
D + A ++G +EA + E+ + +L+ + L L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 255 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAY 314
G+ E A LL++ K + D L K G + A + E ++ N EA
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEAL 239
Query: 315 NCIVDRLGKDGKIDHAINVFE 335
+ L + G+ + A+ E
Sbjct: 240 YNLALLLLELGRYEEALEALE 260
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP 134
T+N +++GLCK + AL +F+ +++ G P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 3e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 270 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302
+G + D T+ LIDGLC+AG + A L+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 137 VTYNILIKGLCKAGRLRTARWILKELGDSG 166
VTYN LI G CKAG+L A + KE+ + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 4e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 273
+ +YN L+ K G + A +L+EM+ G +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 6e-04
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTP 99
+YN+L+ L + G+ +EA +F++M + P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 137 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA 171
VTYN LI GLCKAGR+ A + KE+ + G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 9e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDV 66
VTYN+LI G + + +L+L EM E GI PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 53/264 (20%), Positives = 100/264 (37%), Gaps = 44/264 (16%)
Query: 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61
LID Y + + + + M E V +NS++AG + +L L EM + G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL-CKNRYTDNA 120
+ D ++++ ++ +L + A + +I P N L L K ++A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDA 379
Query: 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180
+F + + L+++N LI G GR A + + + G APN +T+ ++
Sbjct: 380 RNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 181 CFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240
C + + G EI +M ++
Sbjct: 436 CRYSGLSEQGWEIFQSMSE----------------------------------NHRIKPR 461
Query: 241 IVSYNTLINLYCKEGKLEAAYLLL 264
+ Y +I L +EG L+ AY ++
Sbjct: 462 AMHYACMIELLGREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.002
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 103 TFNIMLNGLCKNRYTDNALRMFR 125
T+N +++GLC+ D A+ +
Sbjct: 9 TYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 205
+TY T++ + + + LE+ MK +G D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGF 132
T+N +++G CK + AL +F+ +++ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 252 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLC--KAGNIKGARLH---LEYMNKIG 306
C G+LE A LL+ M++ D+ + L LC K +G+R+ L +G
Sbjct: 62 CSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL 366
+ N ++ + G++ HA VF M +D F+++ +V KA A L
Sbjct: 121 ----VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYH 176
Query: 367 SCLKSGVR 374
L +GVR
Sbjct: 177 RMLWAGVR 184
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGI 62
VTYNSLI+G + L +L+L EM E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 410 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.87 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.79 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.78 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.78 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.76 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.74 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.73 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.73 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.72 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.63 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.58 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.58 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.57 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.57 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.56 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.55 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.49 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.49 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.49 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.44 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.43 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.43 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.41 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.4 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.36 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.32 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.3 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.27 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.25 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.25 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.24 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.14 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.06 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.05 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.01 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.99 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.94 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.94 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.93 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.92 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.91 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.91 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.89 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.89 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.88 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.81 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.8 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.78 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.71 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.66 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.56 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.51 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.45 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.42 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.41 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.4 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.25 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.25 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.21 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.21 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.17 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.16 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.15 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.1 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.09 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.09 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.08 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.07 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.06 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.06 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.04 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.02 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.0 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.93 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.89 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.84 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.83 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.81 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.78 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.76 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.76 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.64 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.6 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.58 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.55 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.54 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.43 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.42 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.38 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.37 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.32 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.3 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.29 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.29 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.26 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.25 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.21 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.09 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.97 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.86 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.77 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.73 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.69 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.69 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.68 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.64 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.59 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.55 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.54 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.52 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.51 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.49 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.26 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.22 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.21 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.2 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.95 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.94 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.9 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.9 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.67 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.53 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.51 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.23 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.22 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.15 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.1 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.07 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.99 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.76 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.72 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.68 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.58 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.34 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.33 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.31 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.24 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.12 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 94.05 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.04 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.88 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 93.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.69 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.68 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.66 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.53 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.33 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.31 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.23 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.15 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.93 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.8 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.71 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.48 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.37 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.36 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.14 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.93 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.61 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.57 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.51 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.44 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.91 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.8 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.75 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.71 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.69 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.55 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.22 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.16 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.15 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 90.13 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.98 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.93 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.73 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.71 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.66 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.48 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.38 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.35 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 89.33 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.63 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.46 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.27 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.18 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 88.04 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.01 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 87.97 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.89 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.76 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.7 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.64 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 87.41 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 86.51 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 86.5 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.27 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.21 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.14 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 86.08 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.01 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.12 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 84.81 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 83.84 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.78 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.61 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.25 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.89 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 82.27 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.16 | |
| COG0735 | 145 | Fur Fe2+/Zn2+ uptake regulation proteins [Inorgani | 81.94 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 81.94 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 80.82 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.17 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-64 Score=464.79 Aligned_cols=404 Identities=16% Similarity=0.246 Sum_probs=389.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGI-SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
++..|++.|++++|+++|++|.+.|+ +++..+++.++..|.+.|..++|..+++.|.. |+..+|+.++.+|++.|
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc
Confidence 46678889999999999999999984 56778888999999999999999999999864 89999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHH--cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 015246 161 ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR--KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 238 (410)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 238 (410)
.|...|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.++.
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999986 578999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 015246 239 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 318 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 318 (410)
|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHhhcc----CCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHH
Q 015246 319 DRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 394 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (410)
.+|++.|++++|.++|++|.. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|..++.+|.+.|+.+
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999964 3889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 015246 395 EAKKIQSKIRMAKIS 409 (410)
Q Consensus 395 ~a~~~~~~~~~~~~~ 409 (410)
+|.+++++|.+.|+.
T Consensus 772 ~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 772 VGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999998864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=461.19 Aligned_cols=405 Identities=17% Similarity=0.300 Sum_probs=313.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
||.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 67777777888888888888887777778888888888888888888888888888777777788888888888888888
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK--HGFVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888887777778888888888888888888888888887765 567777778888888888888888888888
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 160 KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88877777777788888888888888888888888888877777787788888888888888888888888887777777
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888887777777888888888888888888888888888877777788888888888
Q ss_pred HHHccCChHHHHHHHHhhccC----CchhHHHHHHHHHh-----------------------cCChhhHHHHHHHHHHcC
Q 015246 320 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK-----------------------AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~-----------------------~~~~~~A~~~~~~~~~~~ 372 (410)
+|.+.|++++|.+++.+|.+. +..+|+.++..|.+ .+..+.|..+|++|++.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 888888888888887777655 66677777654321 112356777778888778
Q ss_pred CCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 373 VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+.||..||..++.+++..++.+.+..+++.|...
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 7888777777776666777777777777666433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-59 Score=430.25 Aligned_cols=393 Identities=16% Similarity=0.248 Sum_probs=320.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++..|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 344444444444444444443 2344444444444444444444444444444444444444444444444444444
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444444444555566667778888899999999999999998864 48899999999999999999999999999
Q ss_pred hhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 015246 163 GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 242 (410)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (410)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 6899
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 321 (410)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999975 68999999999999999
Q ss_pred HccCChHHHHHHHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHH
Q 015246 322 GKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 400 (410)
.+.|++++|.++++++... +..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..++..|.+.|++++|.+++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999998654 88899999999999999999999999998543 335779999999999999999999999
Q ss_pred HHHHHccC
Q 015246 401 SKIRMAKI 408 (410)
Q Consensus 401 ~~~~~~~~ 408 (410)
+.|++.|+
T Consensus 552 ~~m~~~g~ 559 (697)
T PLN03081 552 ETLKRKGL 559 (697)
T ss_pred HHHHHcCC
Confidence 99999886
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-59 Score=436.95 Aligned_cols=399 Identities=21% Similarity=0.256 Sum_probs=255.6
Q ss_pred ChhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 1 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
+||.+|++.|++++|+++|++|...|+.||..+|+.++.+|+..+++..+.+++..|.+.|+.|+..+++.++.+|++.|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 37888999999999999999998888888888777666666655555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.++++.|+++.+.+++.
T Consensus 237 ~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 237 DVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred CHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 5555555555554 344455555555555555555555555555555555555555555555444444444444444
Q ss_pred HHhhCCCCCcH-------------------------------HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 161 ELGDSGHAPNA-------------------------------ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 161 ~~~~~~~~~~~-------------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.+.+.|..||. .+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 44444444444 45555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
+.++.+|++.|+++.|.++++.+.+.|..|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 555555555555555555555555555555555555555555555666666665555532 1222333333333333
Q ss_pred CChhHHHHHHHHHH----------------------------------hcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 290 GNIKGARLHLEYMN----------------------------------KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 290 ~~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
|+.++|..+|++|. +.|+.++..+++.++.+|.++|++++|.++|+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 33333333333333 33334444444556677888888889999998
Q ss_pred hhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH-HccC
Q 015246 336 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR-MAKI 408 (410)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~ 408 (410)
.+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||..++.+|.+.|++++|.++|+.|+ +.++
T Consensus 549 ~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred hc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 88 679999999999999999999999999999999999999999999999999999999999999998 4443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=425.06 Aligned_cols=393 Identities=18% Similarity=0.277 Sum_probs=351.6
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAG-ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
+|..|.+.|++++|+++|++|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 5777888888888888888887654 568888888888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC-------------------------
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE------------------------- 135 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------- 135 (410)
+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+
T Consensus 173 ~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 173 MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 8888888888886 57788888888888888888888888888876665555
Q ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC
Q 015246 136 ----------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 205 (410)
Q Consensus 136 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (410)
..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|.+.|++++|.++|++|.+.|+.||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 44557788889999999999999998864 6889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 015246 206 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 285 (410)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (410)
..+|+.++.+|++.|++++|.+++..|.+.|..|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 4688899999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-----CchhHHHHHHHHHhcCChhh
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPS 360 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 360 (410)
|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+. +..+|+.++.+|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999753 67799999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 361 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 361 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
|.+++++| ++.|+..+|..++.+|...|+.+.|..+++++.+.+++
T Consensus 481 A~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 481 AYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 99999887 68899999999999999999999999999999877765
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=429.66 Aligned_cols=396 Identities=18% Similarity=0.274 Sum_probs=380.8
Q ss_pred ChhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 1 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
+||..|++.|+++.|.++|++|. +||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|...+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 37889999999999999999997 47999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
++..+.+++..+.+.|+.|+..+++.++.+|++.|+++.|.++|++|.. ||..+||.++.+|++.|++++|.++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864 588999999999999999999999999
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 015246 161 ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240 (410)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (410)
+|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 478
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015246 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 320 (410)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (410)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHH
Q 015246 321 LGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 400 (410)
|.+.|++++|.++|++|..++..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|.+.|+.+.+.+++
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999986 58999999999999999988888888888
Q ss_pred HHHHHccCC
Q 015246 401 SKIRMAKIS 409 (410)
Q Consensus 401 ~~~~~~~~~ 409 (410)
..+.+.|+.
T Consensus 513 ~~~~~~g~~ 521 (857)
T PLN03077 513 AHVLRTGIG 521 (857)
T ss_pred HHHHHhCCC
Confidence 888877653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-30 Score=245.56 Aligned_cols=387 Identities=12% Similarity=0.046 Sum_probs=238.5
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+...|++++|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 344444444444444444433 2334444444455555555555555555544432 22334444555555555555555
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
.++++.+.... +.+...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555554433 4445555555566666666666666666555442 224445555555566666666666666655543
Q ss_pred CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 015246 166 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 245 (410)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (410)
. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...++.+...+ |+..++.
T Consensus 665 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 740 (899)
T TIGR02917 665 K-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAI 740 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHH
Confidence 2 2235555556666666666666666666665554 4455556666666666677777777777666643 3335556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 325 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (410)
.++.++...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +++..++..+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 66666777777777777777766653 3356666777777777777777777777777653 455667777777777777
Q ss_pred ChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 326 KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 326 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
+ .+|+..++++... ++..+..++..+...|++++|.+.++++++.+ +.++.++..++.++.+.|++++|.+++++
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 6677777766544 56667777778888888888888888888775 44777888888888888888888888887
Q ss_pred HH
Q 015246 403 IR 404 (410)
Q Consensus 403 ~~ 404 (410)
|.
T Consensus 897 ~~ 898 (899)
T TIGR02917 897 LL 898 (899)
T ss_pred Hh
Confidence 75
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-29 Score=242.19 Aligned_cols=396 Identities=14% Similarity=0.092 Sum_probs=228.4
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+..+.+.|++++|+++++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 445566666666666666666543 3455566666666666666666666666665532 22344445555555555555
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC-------------------------------
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG------------------------------- 131 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------- 131 (410)
++|.+.|+++...+ +.+..++..+...+...|+.++|...++++...+
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555443 3344444445555555555555555555444332
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 132 --FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 132 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.+.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 22244445555555555555555555555554432 1233444445555555555555555555555443 3334445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
..+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...++.+...+ |+..++..++.++...
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 555555555555555555555555442 2344555555666666666666666666666542 3335555566666666
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
|++++|...++.+.+. .+.+...+..+...|...|++++|...|+++... ++.++..++..+...|+ .+|+..++
T Consensus 750 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 6666666666666654 2445666666677777777777777777766544 45566677777777777 66777777
Q ss_pred HHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 367 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
++.+.. +.++.++..+..++...|++++|.+.++++.+.+++
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 776552 345556667777778888888888888888777664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-23 Score=201.22 Aligned_cols=389 Identities=11% Similarity=-0.003 Sum_probs=266.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhH------------HH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSY------------NS 71 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~ 71 (410)
.+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+...... ...+ ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4667899999999999999875 45788899999999999999999999999987643211 1111 22
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 72 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
....+.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 3456778999999999999999875 5667788889999999999999999999998763 234555555555553 345
Q ss_pred HHHHHHHHHHHhhCCCC--------CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH
Q 015246 152 LRTARWILKELGDSGHA--------PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 152 ~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (410)
.++|..+++.+...... .....+..+...+...|++++|++.+++..+.. |.+...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 56666665544321100 001123334455556666666666666666553 334455555666666666666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHH--------------------------------------------HHHHHhcCCHHH
Q 015246 224 EATDYMEQMVTDGVQLDIVSYNTL--------------------------------------------INLYCKEGKLEA 259 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~~~~~~ 259 (410)
+|...++++.+... .+...+..+ ...+...|+.++
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 66666666655321 122222222 233444555555
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhcc
Q 015246 260 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 339 (410)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (410)
|..+++. .+.+...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++.+..
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5555441 13345566677788888888888888888888763 44677788888888888888888888887765
Q ss_pred C---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CC---cHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 340 K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV--RI---LKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 340 ~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
. +...+..+..++...|++++|.+++++++.... +| +...+..+...+...|++++|.+.+++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 455666777888888888888888888876431 12 224556667788888888888888888764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-22 Score=184.04 Aligned_cols=395 Identities=16% Similarity=0.044 Sum_probs=285.3
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
..+.+.|++++|++.|++..+. .|+...|..+..+|.+.|++++|++.++...+.+ +.+...+..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4577889999999999998876 5778888889999999999999999999988864 235678888999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC---------------------------CCCCC-
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---------------------------GFVPE- 135 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~- 135 (410)
+|...|..+...+ ..+......++..+........+...++.-... ...+.
T Consensus 212 eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9988887665442 111111111111111111111111111100000 00000
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC-CCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHH
Q 015246 136 LVTYNILIKG---LCKAGRLRTARWILKELGDSG-HAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 210 (410)
Q Consensus 136 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (410)
...+..+... ....+++++|.+.|+.....+ ..| ....+..+..++...|++++|+..+++..+.. +.....|.
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 0000111100 122467889999999988754 223 45667778888889999999999999998874 44566788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
.+..++...|++++|...++...+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC
Confidence 88889999999999999999998863 3467888889999999999999999999998874 335667778888999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hh-------HHHHHHHHHhcCChhh
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FT-------YSSMVHNLCKAKRLPS 360 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~-------~~~l~~~~~~~~~~~~ 360 (410)
++++|...+++..+. .+.+...+..+..++...|++++|...|++....++ .. +...+..+...|++++
T Consensus 448 ~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 448 SIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999875 345678889999999999999999999998766521 11 1112223334699999
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 361 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 361 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
|.++++++++.+ +.+...+..++..+.+.|++++|.+.|++..+..
T Consensus 527 A~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 527 AENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999998764 4455678889999999999999999999886543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=181.75 Aligned_cols=294 Identities=14% Similarity=0.061 Sum_probs=175.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhhcC
Q 015246 39 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC---TATFNIMLNGLCKNR 115 (410)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 115 (410)
..+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666666777777766643 22445566666666667777777776666665421111 234556666666667
Q ss_pred chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc----HHHHHHHHHHHHhccchhHHH
Q 015246 116 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 191 (410)
++++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 777777777666654 223555666666666677777777777766665433221 122344555666667777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777666553 33444555666666667777777777776665432222345566666666777777777777766655
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHhhcc
Q 015246 272 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK---DGKIDHAINVFESMEV 339 (410)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 339 (410)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++..
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 344445566666666677777777777666653 4565566655555443 3466666666665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=181.89 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=243.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 015246 73 MHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKA 149 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 149 (410)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677899999999999999875 56677899999999999999999999999987532222 24678889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHcCCHHHH
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG----FGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 225 (410)
|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998753 346778889999999999999999999999876522221 2345667778889999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998763 33566777888899999999999999999987643333466788899999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCcHh
Q 015246 306 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKSGVRILKS 378 (410)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~ 378 (410)
.|+...+..++..+.+.|++++|..+++++... +...+..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466667788899999999999999999987765 44556666666554 558899999999999877777765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-22 Score=181.73 Aligned_cols=329 Identities=12% Similarity=0.038 Sum_probs=256.4
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|...++++.... |.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3556778899999999999988775 3445566666777778999999999999998864 2356778888888899999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+++|...++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999988764 566778888888999999999999999888765333 33334333 347788999999999998
Q ss_pred HhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHcCC
Q 015246 162 LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE----ATDYMEQMVTDGV 237 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~ 237 (410)
+......++......+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++..+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 8775433444555556677888999999999999988775 5567777888888899998885 788888888763
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHHHH
Q 015246 238 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-EAYNC 316 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 316 (410)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.+. .|+. ..+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 3366788888889999999999999999988764 334566777888889999999999999988875 3443 33444
Q ss_pred HHHHHHccCChHHHHHHHHhhccC
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+..++...|++++|...|++....
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 567788899999999999987665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-21 Score=182.32 Aligned_cols=398 Identities=13% Similarity=0.021 Sum_probs=307.0
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+......|+.++|+++|....... +.+...+..+...+...|++++|.++|++..+.. |.+...+..++.++...|++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 456778999999999999998743 5566679999999999999999999999998863 34567788888999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+..+.|+..++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998875 55666 88899999999999999999999998743 36667777888888999999999999876
Q ss_pred hhCCCCCcH------HHHHHHHHHHH-----hccch---hHHHHHHHHHHHc-CCCCChh-hHH----HHHHHHHHcCCH
Q 015246 163 GDSGHAPNA------ITYTTIMKCCF-----RNRKY---KLGLEILSAMKRK-GYTFDGF-GYC----TVIAAFVKIGRL 222 (410)
Q Consensus 163 ~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~ 222 (410)
.. .|+. ......+.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 64 2321 11122222222 12234 7788888888864 1123221 111 113445677999
Q ss_pred HHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHhcCChhHHHHH
Q 015246 223 KEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+..... .......+..++...|++++|...
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999987532 222 22335778999999999999999987653221 134566677788999999999999
Q ss_pred HHHHHhcCC-----------CCC---HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhH
Q 015246 299 LEYMNKIGF-----------DSN---LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 361 (410)
Q Consensus 299 ~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 361 (410)
++.+.+... .|+ ...+..+...+...|++++|+..++++... ++..+..++..+...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999987521 123 234566778899999999999999998765 777889999999999999999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 362 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
++.++++++.. |.+...+...+..+...|++++|..+++++.+..|++
T Consensus 413 ~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 413 ENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 99999999764 4456777778888999999999999999999988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-23 Score=174.18 Aligned_cols=353 Identities=15% Similarity=0.106 Sum_probs=174.3
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCChhH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVW-SYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 84 (410)
+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.. ....+...+...|+.++
T Consensus 126 ~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccch
Confidence 334455555555555555442 223444555555555555555555555444442 22222 12223333334455555
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
|...|.+.+... +--...|..|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+.++.|...|.+..
T Consensus 203 a~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 203 AKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 555544444332 222344555555555555555555555555543 222 3445555555555555555555555554
Q ss_pred hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh
Q 015246 164 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 243 (410)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (410)
... +.....+..+...|...|+.+.|+..+++.++.. |.-...|+.+..++-..|++.+|.+.+.+.+... +.....
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 421 1123444445555555555555555555555543 3334455555555555555555555555555531 123444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLG 322 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 322 (410)
.+.+...|...|.+++|..+|....+-. +--...++.+...|-..|++++|+..+++.++ +.|+ ...++.+...|-
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 5555555555555555555555554431 11123455555555555555555555555554 3343 344555555555
Q ss_pred ccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 323 KDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
..|+.+.|.+.+.+....++ ..++.|...|...|+..+|+..|+++++
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 55555555555555554422 3455555555555555555555555553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-23 Score=172.94 Aligned_cols=391 Identities=14% Similarity=0.052 Sum_probs=329.6
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
.+.+..+++....--....+.. +.-..+|..+...+-..|++++|+.+++.+.+... .....|..+..++...|+.+.
T Consensus 91 i~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~ 168 (966)
T KOG4626|consen 91 IFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLEL 168 (966)
T ss_pred hhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcc
Confidence 4455566666655544444443 55678999999999999999999999999998643 267889999999999999999
Q ss_pred HHHHHHHHhcCCCCCChh-HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 85 ANRVFQDMICGDLTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
|.+.|.+.++.+ |+.. ....+...+-..|+..+|...|.+..+... -=...|+.|.-.+...|+...|+..|++..
T Consensus 169 a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 169 AVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred cHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 999999998764 4443 334455666678999999999999887632 235678899999999999999999999998
Q ss_pred hCCCCCc-HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-h
Q 015246 164 DSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-I 241 (410)
Q Consensus 164 ~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 241 (410)
+. .|+ ...|..|...|...+.++.|...+.+..... +.....+..+...|..+|.++-|++.+++.++. .|+ +
T Consensus 246 kl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~ 320 (966)
T KOG4626|consen 246 KL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFP 320 (966)
T ss_pred cC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCch
Confidence 74 344 6778899999999999999999999998775 556778888888999999999999999999985 344 6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDR 320 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 320 (410)
..|+.+..++-..|+..+|.+.++....... ......+.+...+...|.++.|..+|....+. .|. ....+.|...
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASI 397 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHH
Confidence 7899999999999999999999999998752 35667888999999999999999999999884 444 5678899999
Q ss_pred HHccCChHHHHHHHHhhccCC---chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HhhHHHHHHHHhhcCCHHHH
Q 015246 321 LGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL-KSAQKAVVDGLRHSGCRREA 396 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 396 (410)
|-.+|++++|+..+++..... ..+|+.+...|-..|+.+.|++.+.+++.. .|. ......+...|...|+..+|
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHH
Confidence 999999999999999988773 457888999999999999999999999954 554 67888999999999999999
Q ss_pred HHHHHHHHHccCCC
Q 015246 397 KKIQSKIRMAKISH 410 (410)
Q Consensus 397 ~~~~~~~~~~~~~~ 410 (410)
++-++...+.+|+.
T Consensus 476 I~sY~~aLklkPDf 489 (966)
T KOG4626|consen 476 IQSYRTALKLKPDF 489 (966)
T ss_pred HHHHHHHHccCCCC
Confidence 99999999988863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-22 Score=192.11 Aligned_cols=358 Identities=12% Similarity=0.047 Sum_probs=242.0
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCC-CHHHHH------------HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHh
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISP-DVVTYN------------SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWS 68 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 68 (410)
|-.++.+.|++++|++.|++..+..... ....|. .....+.+.|++++|...|+++.+.. +.+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a 387 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYA 387 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 4467889999999999999998864211 111121 22456778999999999999999874 336677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCC--------CCHHHHH
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--------PELVTYN 140 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~ 140 (410)
+..+..++...|++++|.+.|+++.+.. +.+...+..+...+. .++.++|..+++.+...... .....+.
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 8888999999999999999999998765 444555555555443 23445555554433221000 0011223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHH----------
Q 015246 141 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC---------- 210 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 210 (410)
.+...+...|++++|.+.|++..+..+ .+...+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 334444555555555555555544321 133344444555555555555555555554432 11222211
Q ss_pred ----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015246 211 ----------------------------------TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 256 (410)
Q Consensus 211 ----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (410)
.....+...|+.++|..+++. .+.+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 223445566666667666651 34566677888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 336 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (410)
+++|...|+++.+.. +.+...+..++..+...|++++|...++.+.+.. +.+......+..++...|++++|.++++.
T Consensus 619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999874 3467888999999999999999999999888752 34566677788899999999999999999
Q ss_pred hccC---Cc------hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 337 MEVK---DS------FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 337 ~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+... ++ ..+..+...+...|++++|+..|++++..
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8764 12 35556678889999999999999999753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-21 Score=178.57 Aligned_cols=358 Identities=10% Similarity=0.014 Sum_probs=273.5
Q ss_pred hhhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 6 YCQFVSFDAGYTILNRMREAG--ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
+.++.+++.---.|+...++. -..+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 445566665555555544321 0122333455677788899999999999999886433 4566666777778899999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
.|.+.|+++.... |.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999998876 6677788888899999999999999999998863 3367788888999999999999999998887
Q ss_pred hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh
Q 015246 164 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 243 (410)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (410)
..... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...+++..+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 65433 23333333 3477889999999999998776433344445556678888999999999999998864 346777
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 244 YNTLINLYCKEGKLEA----AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
+..+...+...|++++ |...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8888889999999885 788999988764 3356788888999999999999999999988863 344667777888
Q ss_pred HHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 320 RLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++...|++++|...++++...++ ..+..+..++...|++++|...|+++++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999998876522 33444567788899999999999998866
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-19 Score=166.25 Aligned_cols=397 Identities=11% Similarity=-0.006 Sum_probs=293.9
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDV--VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
...++|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.... -+........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 4678999999999999999874 443 344 8888888899999999999998721 122233344446688888999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
++|.++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999886 566777788888999999999999999999876 445555555555555566666699999999
Q ss_pred hhCCCCCcHHHHHHHHHHHHhccchhHHHH------------------------------------------------HH
Q 015246 163 GDSGHAPNAITYTTIMKCCFRNRKYKLGLE------------------------------------------------IL 194 (410)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------------------------------------------~~ 194 (410)
.+..+ .+...+..+..+..+.|-...|.+ -+
T Consensus 196 l~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 88642 245555555555555444333333 33
Q ss_pred HHHHHc--CCCCChhh----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 195 SAMKRK--GYTFDGFG----YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 195 ~~~~~~--~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
+.+... ..|+.... ..-.+-++...|+..++++.++.+...+.+....+-..+..+|...+++++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 333321 11211111 123345677889999999999999988766556678889999999999999999999986
Q ss_pred hCCC-----CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----------CCC---HHHHHHHHHHHHccCChHH
Q 015246 269 KQGF-----ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-----------DSN---LEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 269 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~ 329 (410)
.... .++......|.-++...+++++|..+++.+.+... .|+ ......++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6431 22334457788999999999999999999987311 122 2234456777889999999
Q ss_pred HHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 330 AINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 330 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
|.+.++++... |......+...+...|++.+|.+.++.+.... +.+..+....+.++...|++++|..+.+.+.+.
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999998766 78888889999999999999999998777552 446677778888899999999999999999888
Q ss_pred cCCC
Q 015246 407 KISH 410 (410)
Q Consensus 407 ~~~~ 410 (410)
.|+|
T Consensus 514 ~Pe~ 517 (822)
T PRK14574 514 SPED 517 (822)
T ss_pred CCCc
Confidence 8775
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-19 Score=165.04 Aligned_cols=371 Identities=12% Similarity=-0.010 Sum_probs=270.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|.+.++..++.+ +.+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3456677888999999999999999874 5678889999999999999999999999999875 566788999999999
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------------
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS--------------------------- 165 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------- 165 (410)
..|++++|+..|..+...+...+.. ...++..+........+...++.-...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999999887766542221211 111111111111111111111110000
Q ss_pred CCCCc-HHHHHHHHHH---HHhccchhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 166 GHAPN-AITYTTIMKC---CFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 166 ~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
...+. ...+..+... ....+++++|.+.|+...+.+ .+.....+..+...+...|++++|...+++..+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 00000 0000111100 122367899999999998764 13345567788888899999999999999999863 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
....|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 46678888899999999999999999998874 3467888999999999999999999999999863 445777888899
Q ss_pred HHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHh------hHHHHHHHHhhc
Q 015246 320 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS------AQKAVVDGLRHS 390 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~ 390 (410)
++.+.|++++|...+++.... ++..+..+..++...|++++|++.|+++++.....+.. .+......+...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999988764 67889999999999999999999999998763211111 111122223447
Q ss_pred CCHHHHHHHHHHHHHccCCC
Q 015246 391 GCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 391 g~~~~a~~~~~~~~~~~~~~ 410 (410)
|++++|.+++++..+.++++
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCc
Confidence 99999999999988877653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-20 Score=169.66 Aligned_cols=383 Identities=10% Similarity=-0.026 Sum_probs=288.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 16 YTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
+..++. ...+ +.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.++|++.++.
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 3222 4566666777888899999999999999998632 345567899999999999999999999998877
Q ss_pred CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHH
Q 015246 96 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 175 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (410)
. +.+...+..+..++...|++++|...++++.+. .+.+.. +..+..++...|++++|...++++.+..+ .+...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 5 666778888999999999999999999999987 334666 88889999999999999999999998643 3556666
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCC
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDG------FGYCTVIAAFV-----KIGRL---KEATDYMEQMVTD-GVQLD 240 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~ 240 (410)
.+..++...+..+.|++.++.+.. .|+. ......+.... ..+++ ++|+..++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 678888888999999998886664 2221 01112222221 12234 7788888888864 12222
Q ss_pred hh-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CH
Q 015246 241 IV-SYN----TLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NL 311 (410)
Q Consensus 241 ~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 311 (410)
.. .+. ..+..+...|++++|...|+.+.+.+.. |+. ....+..++...|++++|...|+++.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 21 111 1133456779999999999999887532 322 22335778999999999999999988643111 13
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccCCc------------------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVKDS------------------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 373 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 373 (410)
.....+..++...|++++|...++.+...++ ..+..++..+...|++++|++.++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 4566677788999999999999998876522 234567778889999999999999998764
Q ss_pred CCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 374 RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
|.+...+..++..+...|++++|++.++++....|++
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 6678888999999999999999999999999988764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-17 Score=154.85 Aligned_cols=391 Identities=14% Similarity=0.043 Sum_probs=266.1
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR-NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
.+.|.+.|++++|++++.++.+.+ +.+......+...|.. .++ +.+..+++. ....++.....++..+.+.|+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCC
Confidence 567888999999999999999886 4455566677777777 366 777777553 233578888899999999999
Q ss_pred hhHHHHHHHHHhcCCCC-CChhHHHH------------------------------HHHHHhhcCchHHHHHHH------
Q 015246 82 PDEANRVFQDMICGDLT-PCTATFNI------------------------------MLNGLCKNRYTDNALRMF------ 124 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~-~~~~~~~~------------------------------l~~~~~~~~~~~~a~~~~------ 124 (410)
.++|.+++.++...... |...+|.. ++..+.+.++++.+.++.
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPAN 342 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcc
Confidence 99999998887543111 22222211 122223333333333221
Q ss_pred -----------------------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----------------
Q 015246 125 -----------------------RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS---------------- 165 (410)
Q Consensus 125 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------- 165 (410)
+.+.+. .+-+......+.-...+.|+.++|..+|+.....
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 111111 0001111111111222334444444443333220
Q ss_pred -----------------------------------------------CC-CC--cHHHHHHHHHHHHhccchhHHHHHHH
Q 015246 166 -----------------------------------------------GH-AP--NAITYTTIMKCCFRNRKYKLGLEILS 195 (410)
Q Consensus 166 -----------------------------------------------~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (410)
+. ++ +...|..+..++.. +++++|+..+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 00 12 44555555555555 67777888777
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 196 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
+.... .|+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++..+.. +.+
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 77766 355444444455556889999999999987654 3445556677778889999999999999998764 223
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHH
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 352 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 352 (410)
...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++.... ++..+..+..++
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 333334444555669999999999999985 567888999999999999999999999988776 667888899999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
...|++++|+..++++++.. |.+...+..+..++...|++++|...++++.+..++
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999764 557888999999999999999999999999887765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-18 Score=152.62 Aligned_cols=398 Identities=15% Similarity=0.068 Sum_probs=236.5
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPD--VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG- 80 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 80 (410)
++|..+|+++.|...|-+..+.. ++ ...+-.+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhh
Confidence 34444555555555554444432 22 2223334455555555555555555554431 223334444444444332
Q ss_pred ---ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015246 81 ---KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL----QKHGFVPELVTYNILIKGLCKAGRLR 153 (410)
Q Consensus 81 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (410)
..+.|..++....... +.|...|..+...+.....+.. +..|..+ ...+..+.+...|.+...+...|++.
T Consensus 392 ~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 2334444444433332 3444445444444433332222 4433332 22333345555566666666666666
Q ss_pred HHHHHHHHHhhC---CCC------CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHcCCHH
Q 015246 154 TARWILKELGDS---GHA------PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 154 ~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 223 (410)
.|...|+..... ... ++..+-..+..+.-..++++.|.+.|..+.+. .|. ...|..++......+...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcH
Confidence 666666555432 011 12222233444445555666666666666555 222 222222322223335566
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHh------------cC
Q 015246 224 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCK------------AG 290 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~ 290 (410)
+|...+...... ...++..+..+...+.....+..|.+-|..+.+.- ..+|..+...|...|.. .+
T Consensus 548 ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 548 EASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 666666666654 23355666666667777777777777666665432 23466666666665542 24
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
..+.|+++|.++++.. +.|...-+.+.-.++..|++.+|..+|.++.+. ...+|..+.++|...|++..|++.|+.
T Consensus 627 ~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999988863 557777788999999999999999999999877 668999999999999999999999999
Q ss_pred HHHc-CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 368 CLKS-GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 368 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
+.+. ....++.....|.+++.+.|++.+|.+.+.......|.+
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 8865 334578888999999999999999999999988877653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-17 Score=149.29 Aligned_cols=368 Identities=14% Similarity=0.076 Sum_probs=275.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh--HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDV--WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
+.-.-+-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...+++..... +........+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 33334445679999999999999999864 443 234 88888889999999999999988221 2333334444668
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHH
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (410)
+...|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 88999999999999999987443 6777788889999999999999999999875 45555555555555556677679
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHH------------------------------------------
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY------------------------------------------ 228 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------ 228 (410)
++.++++.+.. |.+...+..+..++.+.|-...|.++
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 99999999885 55565656666665555543333322
Q ss_pred ------HHHHHHc-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHH
Q 015246 229 ------MEQMVTD-GVQLDI-VSY----NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 296 (410)
Q Consensus 229 ------~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 296 (410)
++.+... +..|.. ..| .-.+-++...+++.++.+.++.+...+.+....+-..+..+|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 2333321 111221 111 2234467788999999999999998886656668889999999999999999
Q ss_pred HHHHHHHhcC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc------------------hhHHHHHHHHH
Q 015246 297 LHLEYMNKIG-----FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------------------FTYSSMVHNLC 353 (410)
Q Consensus 297 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~ 353 (410)
.+++.+.... .+++......|..++...+++++|..+++.+....+ ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999997643 123444457889999999999999999998876311 12445677788
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
..|+..+|.+.++++.... |-|......+...+...|.+.+|++.++.+....|+
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 9999999999999998764 668899999999999999999999999888776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-17 Score=130.24 Aligned_cols=399 Identities=15% Similarity=0.172 Sum_probs=289.9
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH---HHHHHHHHcC-------------------CC
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSL---DLLDEMLEMG-------------------IP 63 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~-------------------~~ 63 (410)
+..+|.+.++.-+++.|.+.|++.+...-..|++..+-.+.-+--. +.|-.|.+.| .+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 4567899999999999999998888877766665443322211111 1111121111 23
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015246 64 PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI 143 (410)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (410)
-+..++..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 3678899999999999999999999999888777899999999987654332 277899999988999999999999
Q ss_pred HHHHhcCCHHH----HHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH-HHHHHHHHHHc----CC----CCChhhHH
Q 015246 144 KGLCKAGRLRT----ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL-GLEILSAMKRK----GY----TFDGFGYC 210 (410)
Q Consensus 144 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~~ 210 (410)
.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.+++.+ +..++.++... .+ +.|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998765 56788889999999999999999999999888754 44444444432 22 23555677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTD----GVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 283 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 283 (410)
..+..|.+..+.+-|.++..-+... -+.|+ ..-|..+....++....+.-...|..|...-..|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 7888888889999888877666542 12233 2345667777888888999999999998887888999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-Ch--------H-----HHHHHHHh-------hccC--
Q 015246 284 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KI--------D-----HAINVFES-------MEVK-- 340 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~~~-------~~~~-- 340 (410)
++....+.++-..++|.++...|..-+...-..++..+++.. .. . -|..+++. +...
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 999999999999999999988775555555555555555443 11 1 11112221 1111
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-C---CCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-V---RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
.+...+..+..+.+.|+.++|-+++.-..+.+ - .|.......++..-.+.+++..|..+++-+...+.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 56667777778889999999999998886543 1 23334444666777788889999988888766554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-16 Score=128.46 Aligned_cols=354 Identities=16% Similarity=0.181 Sum_probs=263.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
+.+..++..+|.++++-...++|.+++++-.......+..+||.+|.+-.-.. ..+++.+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 56788999999999999999999999999988878889999999998655332 27899999999999999999999
Q ss_pred HHHHhhcCchHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhh----CCCC----CcHHHH
Q 015246 108 LNGLCKNRYTDN----ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT-ARWILKELGD----SGHA----PNAITY 174 (410)
Q Consensus 108 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~ 174 (410)
+++..+.|+++. |.+++.+|.+.|+.|...+|..++..+++.+++.+ +..++.++.. ..++ .+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999888744 5555555543 2222 245556
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRKG----YTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
...+..|.+..+.+.|.++..-+.... ++|+ ..-|..+....++....+.....|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 777888889999999988877766431 2233 223556777778888999999999999988788899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC-Ch--------h-----HHHHHH-------HHHHhcC
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NI--------K-----GARLHL-------EYMNKIG 306 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~-------~~~~~~~ 306 (410)
+++..-.|.++-.-++|.++...|...+......++..+++.. .. . -|..++ .++.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 9999999999999999999888775545444444444444433 11 0 011111 122332
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-----CchhHH---HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHh
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYS---SMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 378 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 378 (410)
.......+.++-.+.+.|+.++|.+++..+... .....+ .++..-...+.+..|+.+++-|...+.+.-..
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhH
Confidence 344567788888999999999999999988544 122233 45566677889999999999998776443333
Q ss_pred hHHHHHHHH
Q 015246 379 AQKAVVDGL 387 (410)
Q Consensus 379 ~~~~l~~~~ 387 (410)
.-+.+...|
T Consensus 598 La~RI~e~f 606 (625)
T KOG4422|consen 598 LAQRIMEDF 606 (625)
T ss_pred HHHHHHHhc
Confidence 334444444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-16 Score=144.07 Aligned_cols=389 Identities=12% Similarity=0.052 Sum_probs=282.5
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+..+.++++++.+.++.. ..|.......-.......+...++.+.+..|.+.. +-+......+.-...+.|+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccH
Confidence 667788888887665522 23333332111122223477788888888887752 33666677777778889999
Q ss_pred hHHHHHHHHHhcC--CCCCChhHHHHHHHHHhhcCc---hHHHHHH----------------------HHHHHhC-C-CC
Q 015246 83 DEANRVFQDMICG--DLTPCTATFNIMLNGLCKNRY---TDNALRM----------------------FRGLQKH-G-FV 133 (410)
Q Consensus 83 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~-~~ 133 (410)
++|.++|...... +-.++......++..|.+.+. ..++..+ ++..... + .+
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 9999999998763 113344455567777777655 3333222 2222111 1 23
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 015246 134 P--ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 211 (410)
Q Consensus 134 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (410)
+ +...|..+..++.. +++++|...+.+..... |+......+...+...|++++|...++++... +|+...+..
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~ 547 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLA 547 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHH
Confidence 4 56778888877776 78889999888877643 55544444455567899999999999998665 455555667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 291 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (410)
+..++.+.|+.++|...++...+.. +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 7788899999999999999998864 223333333444455669999999999999987 4567888999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 292 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 292 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
+++|...+++..+.. +.+...+..+..++...|++++|+..+++.... ++..+..+..++...|++++|+..+++.
T Consensus 625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999863 456778888888999999999999999988765 7778999999999999999999999999
Q ss_pred HHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 369 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
++.. +-+..+.........+..+++.|.+.+++.-..++
T Consensus 704 l~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 704 IDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9663 33446666777778888888888888777655443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-16 Score=137.88 Aligned_cols=396 Identities=11% Similarity=0.045 Sum_probs=213.5
Q ss_pred hhhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 6 YCQFVSFDAGYTILNRMREAGIS--PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
|.-.|+++.+..+..-+...... .-...|-.+.++|-..|++++|...|.+..+.........+..+...+.+.|+++
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 34445555555555444432200 1122344455555555555555555544444321111222334445555555555
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC----chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNR----YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
.+...|+.+.... +.+..+...|...|...+ ..+.|..++.+..+. .+.|...|-.+...+....-+.. +..|
T Consensus 360 ~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~ 436 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAY 436 (1018)
T ss_pred HHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHH
Confidence 5555555554443 333444444444444432 334444444444443 22344445444444433322222 4444
Q ss_pred HHHh----hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc---CCCCChh------hHHHHHHHHHHcCCHHHHH
Q 015246 160 KELG----DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK---GYTFDGF------GYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 160 ~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~~~~~~a~ 226 (410)
..+. ..+..+.+...|.+...+...|++.+|...|...... ...++.. +--.+..++...++.+.|.
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 3332 2333355556666666666666666666666665544 1122221 1223344444555666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI- 305 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 305 (410)
+.|..+.+.. +.-+..|..++......+...+|...++.....+ ..++..+..+...+.+...+..|..-|+.+.+.
T Consensus 517 e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 517 EMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 6666666541 1122333333322233455666666666665543 334455555555666666666666655554432
Q ss_pred CCCCCHHHHHHHHHHHHc------------cCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 306 GFDSNLEAYNCIVDRLGK------------DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
...+|..+...|.+.|.. .+..+.|+++|.++... |..+-+.++.+++..|++.+|..+|.+.++
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 112466666666664432 23467788888877766 455566778888999999999999999987
Q ss_pred cCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 371 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
.. .....+|..++.+|..+|++..|++.|+...+.-
T Consensus 675 a~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 675 AT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 4466788999999999999999999999886654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-17 Score=132.53 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=96.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHH
Q 015246 218 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 297 (410)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (410)
..|++++|...+.+.+.....-....|+ +.-.+-..|+.++|++.|-++... +..+..+...+...|....+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3455666666666655442111111111 122344556666666665554332 12244455555555666666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 015246 298 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 374 (410)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 374 (410)
++.+.... ++.|+.+...|...|-+.|+-..|.+..-.--.- +..+...|..-|....-+++|+..|+++. -++
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcC
Confidence 66555543 4445556666666666666666655544332222 44555555555555555566666666554 235
Q ss_pred CcHhhHHHHHHHH-hhcCCHHHHHHHHHHHHHccC
Q 015246 375 ILKSAQKAVVDGL-RHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 375 ~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~ 408 (410)
|+..-|..++..| .+.|+++.|..+++.+.++-|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 6666665555443 456666666666666555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-15 Score=130.56 Aligned_cols=363 Identities=13% Similarity=0.006 Sum_probs=235.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
.......|++++|.+++.++.+.. +.....|..|..+|-..|+.+++...+-.+...+ +.|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 334444577888888887777763 3366677777777777787777777665554443 55667777777777777778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHH----HHHHHHHHhccchhHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY----TTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 193 (410)
+.|.-+|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|..-+ -..+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888887777763 335555555566777777777777777777765432222222 2234455566666777777
Q ss_pred HHHHHHc-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------------CCCChhhHH
Q 015246 194 LSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG---------------------------VQLDIVSYN 245 (410)
Q Consensus 194 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~ 245 (410)
++..... +-..+...++.++..+.+...++.+........... ..++..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 7766652 123455566777777777777777777766665511 1122222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
.++-++.+.+..+....+.......+. .-+...|..+..++...|.+.+|+.++..+......-+...|..+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 233345555555555555555555553 334567778888888888888888888888876444556678888888888
Q ss_pred cCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHH--------HcCCCCcHhhHHHHHHHHhhcCC
Q 015246 324 DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL--------KSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
.|.+++|.+.++.+... +...-..|...+.+.|+.++|.+.+..+. ..+..|+..........+...|+
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 88888888888887766 33444555666778888888888887754 12344555566666677788888
Q ss_pred HHHHHHHHHHHH
Q 015246 393 RREAKKIQSKIR 404 (410)
Q Consensus 393 ~~~a~~~~~~~~ 404 (410)
.++-......|.
T Consensus 542 ~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 542 REEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHH
Confidence 877665554443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-16 Score=127.24 Aligned_cols=379 Identities=16% Similarity=0.123 Sum_probs=256.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDV------VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ 78 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (410)
.+.+...+..|++.+.-.... .|+. ...+.+...+.+.|.++.|+..|+...+. .|+..+-..|+-++..
T Consensus 246 i~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 456777788888888777654 2322 24455555677888899999888888774 3677666666667777
Q ss_pred cCChhHHHHHHHHHhcCCCC------------CChhHHHHHH-----HHHhhcC--chHHHHHHHHHHHhCCCCCCHH--
Q 015246 79 LGKPDEANRVFQDMICGDLT------------PCTATFNIML-----NGLCKNR--YTDNALRMFRGLQKHGFVPELV-- 137 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~-----~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-- 137 (410)
.|+.++..+.|..|+..... |+....+--+ .-.-+.+ +.++++-.--++..--+.|+-.
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc
Confidence 88888888888888754222 2222222111 1111111 1122222111221111112110
Q ss_pred -----------HH--------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc---------------------HHHH---
Q 015246 138 -----------TY--------NILIKGLCKAGRLRTARWILKELGDSGHAPN---------------------AITY--- 174 (410)
Q Consensus 138 -----------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------~~~~--- 174 (410)
.+ -.-..-+.+.|+++.|.++++-+.+..-+.- ...|
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 00 0112456778888888877776644322110 0111
Q ss_pred -------H-----HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 015246 175 -------T-----TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 242 (410)
Q Consensus 175 -------~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (410)
+ .-......+|++++|.+.+++.+.... .....+..+.-.+...|++++|++.|-++... ...+..
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 0 001112335889999999999887642 22333333445567889999999999887664 344778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
+...+...|-...+..+|.+++.+.... ++.|+...+.+...|-+.|+..+|.+.+-+--+. ++.+.++..-|..-|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 8888999999999999999999887765 4668899999999999999999999988776665 6778899999999999
Q ss_pred ccCChHHHHHHHHhhc--cCCchhHHHHHHHH-HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 323 KDGKIDHAINVFESME--VKDSFTYSSMVHNL-CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
...-+++++..|++.. .++..-|..++..| .+.|+++.|.++|+...+. +|.|...+..+++.+...|-
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999999999764 44778888887655 5699999999999998765 68899999999998877773
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-14 Score=121.13 Aligned_cols=291 Identities=13% Similarity=0.028 Sum_probs=154.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH----HHcCCCCChHhHHHHHHHHHh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEM----LEMGIPPDVWSYNSLMHCLFQ 78 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 78 (410)
.-+|++..-++.|..+++...+. ++.+..+|.+-...=-.+|+.+...+++.+- ...|+..+...|..=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34566777777788888777764 4667777776666666677777776666543 334565565555555555555
Q ss_pred cCChhHHHHHHHHHhcCCCCC--ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015246 79 LGKPDEANRVFQDMICGDLTP--CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 156 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 156 (410)
.|..-.+..+....+..|+.. -..+|..-...|.+.+.++-|..+|....+. ++.+...|......--..|..++..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 555555555555555544322 2345555555566666666666666655554 2334444444444444455555555
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 157 WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
.+|++....- +-....|......+-..|+...|..++..+.+.+ +.+...+...+.....+..++.|..+|.+...
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 5555555432 2233344444444555555555555555555543 33444455555555555555555555555544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHhcCChhHHHHHHHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNIKGARLHLEY 301 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 301 (410)
..|+...|..-+...-..++.++|.+++++..+. -|+ ...|..+.+.+.+.++.+.|...|..
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 2344444444444444445555555555555443 222 22334444444444444444444433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-14 Score=118.44 Aligned_cols=367 Identities=12% Similarity=0.030 Sum_probs=217.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
+|..-.+.|.+.+.++-|..+|....+- ++-+...|..+...--..|..+....+|+++...- +.....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 3444444444445555555555554442 22233444444444444555555555555555432 334444555555555
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 192 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (410)
..|+...|..++....+.... +...|-.-+..-..+.+++.|..+|.+.... .|+...|.--+..-.-.++.++|++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 556666666666666554322 4555555555566666666666666665543 2444444444444444556666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015246 193 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 272 (410)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (410)
++++.++.- +.-...|..+.+.+.+.++++.|...|..-.+. .+..+..|..+...--+.|..-.|..++++..-.+.
T Consensus 673 llEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 666655542 333445555556666666666666666555443 333444555555555555666666666666665542
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHH
Q 015246 273 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL 352 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 352 (410)
-+...|...++.-.+.|+.+.|..+..+.++. ++.+...|..-|.+..+.++-......+.+.. .|+.....+...+
T Consensus 751 -k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dphVllaia~lf 827 (913)
T KOG0495|consen 751 -KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDPHVLLAIAKLF 827 (913)
T ss_pred -CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-CCchhHHHHHHHH
Confidence 25556666666666666666666666666654 44455556666666555555444444433322 2677777788888
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
-...+++.|.+.|.+.++.+ +.+..+|..+...+.+.|.-++-.+++.+.....|.|
T Consensus 828 w~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 88899999999999999775 5567788888888899999999999999998888776
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-14 Score=115.45 Aligned_cols=386 Identities=11% Similarity=0.087 Sum_probs=232.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEAN 86 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 86 (410)
.++++..|..+|++..... ..+...|...+.+=.+++.+..|..+++..... -|.+ ..|...+..--..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 3678889999999999766 567778888888888899999999999988874 2333 34555555556678999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015246 87 RVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 166 (410)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (410)
++|++..+. .|+..+|++.+..=.+.+.++.|..+++...-. .|+..+|--..+.=.+.|+...+..+|+...+.-
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999988765 789999999999988999999999999988764 5788888888877778888888887777765421
Q ss_pred C--CCcHHHHHHHHHHHHhccchhHHHHHHHH--------------------------------------------HHHc
Q 015246 167 H--APNAITYTTIMKCCFRNRKYKLGLEILSA--------------------------------------------MKRK 200 (410)
Q Consensus 167 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------------------------------------------~~~~ 200 (410)
- ..+...+.++...-.+...++.|.-+|+- +.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 01112222222222222222222222222 2222
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHH-----H---HHhcCCHHHHHHHHHHHHhC
Q 015246 201 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV--SYNTLIN-----L---YCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-----~---~~~~~~~~~a~~~~~~~~~~ 270 (410)
+ +.|-.++--.+..-...|+.+...++|+..+.. ++|-.. .|...+- + -....+.+.+.++++.+.+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2 344555666666667778888888888888775 444221 1222111 1 12356677777777766653
Q ss_pred CCCCchHHHHHHHHHH----HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cch
Q 015246 271 GFECDKYTHTILIDGL----CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSF 343 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 343 (410)
++....||..+-..| .++.++..|.+++...+. ..|...+|...|..-.+.+++|.+..++++...- +..
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 233334444333222 344555666666555443 3555555666665555566666666666655544 333
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
+|......-...|+.+.|..+|.-++... +.-....|...+..-...|.++.|..+++++.+
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 44444444445555666666655555321 111123344444444555555555555555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-15 Score=129.50 Aligned_cols=331 Identities=13% Similarity=0.112 Sum_probs=258.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (410)
.-.........|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-.+-..+ +.|...|..+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3333444455699999999999999887 7888999999999999999999999887766653 4477899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhh----HHHHHHHHHHcCCHHH
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG----YCTVIAAFVKIGRLKE 224 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~ 224 (410)
.|+++.|.-.|.+.++..+ ++...+-.-...|-+.|+...|...|.++.....+.|..- ....+..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999998653 4555556667888999999999999999998853223222 2344566777888899
Q ss_pred HHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------Cch
Q 015246 225 ATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE---------------------------CDK 276 (410)
Q Consensus 225 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~ 276 (410)
|.+.++..... +-..+...++.++..+.+...++.+............. ++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99999888763 23345667888899999999999999888877652111 122
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHhhccC----CchhHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 350 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~ 350 (410)
.. ..+.-++.+....+....+...+.+.... -+...|.-+..++...|++.+|+.+|..+... +...|..++.
T Consensus 379 ~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 22 12333444555555555555556665533 34678889999999999999999999999877 6778999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+|...|.+++|++.|++.+... |.+...-..|...+.+.|+.++|.+.++.+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999763 5566777888889999999999999999865
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-15 Score=129.78 Aligned_cols=280 Identities=12% Similarity=0.040 Sum_probs=202.5
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHH--HHHHHHHhccchhHH
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVT-YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT--TIMKCCFRNRKYKLG 190 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 190 (410)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888887777765542 12333 333345557888888888888888764 34433222 335677888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHHhcCCHHHHHHH
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINLYCKEGKLEAAYLL 263 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 263 (410)
...++.+.+.. |.+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888776 6667778888888888889998888888888775442221 222333333344455666666
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 264 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
++.+.+. .+.++.....+...+...|+.++|...+++..+. +|+.... ++.+....++.+++.+..+...+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 6666443 2446778888889999999999999999888873 5555332 233444568889999888887766
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
|+..+..+...+.+.+++++|.+.|+++.+. .|+..++..+..++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667888889999999999999999999855 78888888899999999999999999887643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-15 Score=129.24 Aligned_cols=291 Identities=10% Similarity=-0.032 Sum_probs=205.9
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHH
Q 015246 42 TRNSLLSCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120 (410)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 120 (410)
...|+++.|.+.+....+.. |++ ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999998877753 433 344455677778899999999999887653122223444457888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH---HhccchhHHHHHHHHH
Q 015246 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC---FRNRKYKLGLEILSAM 197 (410)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~ 197 (410)
...++.+.+.. |-++..+..+...+...|++++|.+.+..+.+.+..++......-...+ ...+..+.+.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998875 3367788888999999999999999999998876543322211111211 3333334444455555
Q ss_pred HHcCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 198 KRKGY---TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS---YNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 198 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
.+... +.+...+..+...+...|+.++|.+.+++..+... +... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 54421 23777888888899999999999999999988633 3321 1111222344577888888888887663
Q ss_pred CCCch--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 272 FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 272 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
+-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2244 56678889999999999999999964444457888888899999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=141.20 Aligned_cols=258 Identities=17% Similarity=0.135 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 141 ILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677778888888888886544433 23345555666667777888888888888888765 3355566666666 678
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 2466677778888888899999999988876543 245667788888888899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 015246 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 375 (410)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 375 (410)
+++..+.. +.|......++..+...|+.+++..++...... ++..+..+..++...|++++|+.++++..+.. +.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 99998863 335777888889999999998877777665443 78888899999999999999999999988764 66
Q ss_pred cHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 376 LKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
|+.....+..++...|+.++|.++..++-
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88888899999999999999999887654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=140.89 Aligned_cols=261 Identities=15% Similarity=0.114 Sum_probs=77.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMG-IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 114 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (410)
.+...+...|++++|+++++...... .+.+...|..+.......++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34555666666666666664433332 12233444444555555666666666666666554 3344455555555 466
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHHHhccchhHHHHH
Q 015246 115 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
+++++|.+++....+. .+++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666555443 2344455555666666666666666666654322 234455555666666666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 273 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 273 (410)
+++..+.. |.+......++..+...|+.+++..++....... +.++..+..+..++...|+.++|...|++..+.+ +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 66666653 3345555556666666666666666665555542 3344555566666666666666666666665543 3
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 274 CDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
.|+.+...+..++...|+.++|..+.+++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 355555666666666666666666655543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-15 Score=126.39 Aligned_cols=282 Identities=12% Similarity=0.002 Sum_probs=210.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH--HHHHHHhhcCchHHH
Q 015246 44 NSLLSCSLDLLDEMLEMGIPPDVWS-YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFN--IMLNGLCKNRYTDNA 120 (410)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 120 (410)
.|+++.|.+.+....+.. +++.. +........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 689999998888766542 22333 333345557889999999999998765 45543332 346688889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcH-------HHHHHHHHHHHhccchhHHHHH
Q 015246 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA-------ITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...+.
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998875 337788888899999999999999999999886554322 2334444444455556666667
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 273 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 273 (410)
++.+.+.- +.++.....+...+...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 76665442 557778888899999999999999999988874 4444322 2334445688999999999888774 3
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 274 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
-|+..+..+.+.+...+++++|...|+.+.+. .|+...+..+..++.+.|+.++|.+++++..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667888899999999999999999999884 6888888899999999999999999988764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-15 Score=129.09 Aligned_cols=285 Identities=11% Similarity=0.031 Sum_probs=189.8
Q ss_pred hcCchHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
..|+++.|.+.+.+..+.. |+ ...+-....++...|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4788888888887776652 33 33334446777778888888888888765432222233333466777788888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHH---HHHhcCCHHHHHHHHHHH
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN-TLIN---LYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~~ 267 (410)
..++.+.+.. |.+......+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..++..+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888775 556667777888888888888888888888877543 222221 1111 112222333333344444
Q ss_pred HhCCC---CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHccCChHHHHHHHHhhccC-
Q 015246 268 EKQGF---ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA---YNCIVDRLGKDGKIDHAINVFESMEVK- 340 (410)
Q Consensus 268 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~- 340 (410)
.+... +.++..+..++..+...|+.++|...+++..+.. |+... ...........++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 43321 1366777788888888888888888888888753 33221 111112223456777788888776655
Q ss_pred --Cc--hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 341 --DS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 341 --~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56 6667888889999999999999995443345788888888899999999999999998875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-14 Score=117.17 Aligned_cols=386 Identities=15% Similarity=0.057 Sum_probs=232.5
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCC
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPD-VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGK 81 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 81 (410)
+-|.++|++++|++.+.+.++. .|+ +.-|.....+|...|+|+++.+.-...++. .|+ +..+..-..++-..|+
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhcc
Confidence 3577889999999999999987 567 778888888999999999998888887774 343 3455555666667777
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHh----------
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HG--FVPELVTYNILIKGLCK---------- 148 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~---------- 148 (410)
+++|+.=..-..-.+--.+..+--.+=+.+ -..|....++-.+ .+ +-|+.....+....+..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~L-----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVL-----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHH-----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 776643222111110000111000000000 0111111111111 11 12222222222221110
Q ss_pred ---------------cC---CHHHHHHHHHHHhhC---CCCCc---------HHHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 149 ---------------AG---RLRTARWILKELGDS---GHAPN---------AITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 149 ---------------~~---~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
.+ .+..+...+.+-... ....+ ..+.......+.-.|+.-.+..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00 122222222211110 00011 1112222223445677788888888888
Q ss_pred HcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 015246 199 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 278 (410)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 278 (410)
... +.+...|--+...|...++.++.+..|......+.. ++.+|..-.+.+.-.+++++|..-|++..... +.+...
T Consensus 354 ~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~ 430 (606)
T KOG0547|consen 354 KLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYA 430 (606)
T ss_pred hcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHH
Confidence 765 233333666777788888888888888888876443 67777777777777888888888888888764 224556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cchh--HHH
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFT--YSS 347 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~--~~~ 347 (410)
|..+.-+..+.+.++++...|++..+. ++.-++.|+.....+..+++++.|.+.|+..... ++.. ...
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 666666667788888888888888775 6666788888888888888888888888876554 1111 111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
++. +.-.+++..|.+++.++++.+ |-....+..+.....+.|+.++|+++|++..
T Consensus 510 ~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 510 LLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 112478888888888888664 4456677788888888888888888888753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-13 Score=109.60 Aligned_cols=357 Identities=11% Similarity=0.055 Sum_probs=245.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh--HHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA--TFNI 106 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 106 (410)
.|...+-.....+-+.|....|.+.|...... .|..-.+|..|.... -+.+.+..+ .. +.+.+.. .--.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----VV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----Hh-cCcccchHHHHHH
Confidence 34333333344455567777777777666543 222333333333322 222222222 11 1122111 1123
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCcHHHHHHHHHHHHhc
Q 015246 107 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH--APNAITYTTIMKCCFRN 184 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 184 (410)
+..++-...+.+++.+-.......|++.+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~- 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-
Confidence 4456666778888888888888888876666666666777788999999999999988632 1256677766543222
Q ss_pred cchhHHHHHHHH-HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015246 185 RKYKLGLEILSA-MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 263 (410)
Q Consensus 185 ~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 263 (410)
+-. +..+.+ ....+ +.-+.|...+.+.|+-.++.++|...|+..++.+.. ....|+.+..-|....+...|.+.
T Consensus 312 -~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 -KSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred -hHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 112211 11111 445667778888899999999999999999987443 567788888899999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 264 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
++..++-+ +-|...|-.+.++|.-.+.+.=|+-.|++..+. .+.|+..|..|..+|.+.++.++|++.|.....-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999886 448889999999999999999999999999986 3667899999999999999999999999988766
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCC-cHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----G-VRI-LKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
+...+..++..+-+.++.++|...|++.++. | ..| .......|..-+.+.+++++|......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 4578999999999999999999999888752 3 222 122223344456777777777664443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-13 Score=110.77 Aligned_cols=282 Identities=16% Similarity=0.151 Sum_probs=203.0
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHH
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
.|++.+|++.+.+-.+.+-. ....|..-+++....|+.+.+-.++.+..+....++....-...+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68888888888887776544 34455556677778888888888888887754455666666667777888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
+.++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88888776 6667777788888888888888888888888876654433 445555544445555555556666
Q ss_pred HHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cch
Q 015246 267 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSF 343 (410)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 343 (410)
.... .+.++..-..++.-+...|+.++|.++..+..+.+..|+ -...-.+.+-++...-.+..+...+. ++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5443 244566677777788888888888888888888766665 22223455666666666665554443 677
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
.+.+|+..|.+++.+.+|.+.|+..++. .|+..++..+..++.+.|+.++|.++.++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8888888888888888888888887744 7888888888888888888888888887654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-13 Score=109.71 Aligned_cols=286 Identities=16% Similarity=0.049 Sum_probs=214.1
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
..|+|.+|+++..+-.+.+-. ....|..-+++.-..|+.+.+-.++.++.+..-.++....-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 368899999888887766433 3445666667777888899999988888876335666777777788888888899988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc-------HHHHHHHHHHHHhccchhHHHHHHH
Q 015246 123 MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-------AITYTTIMKCCFRNRKYKLGLEILS 195 (410)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (410)
-++++.+.+.. ++.......++|.+.|++.....++..+.+.+.-.+ ..+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888887544 677788888899999999999999988888775443 3457777776666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 196 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
....+- +.++..-..++.-+.++|+.++|.++..+..+.+..|+ ... .-.+.+-++...-.+..+.-.+.. +.+
T Consensus 254 ~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 655442 45566667778888889999999999888888766555 111 223456677777777766665542 335
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
+..+..+...|.+.+.+.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 57788888889999999999999997777 47888899999999999999999888887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-13 Score=107.36 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=207.8
Q ss_pred cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhhcCchHHH
Q 015246 44 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC---TATFNIMLNGLCKNRYTDNA 120 (410)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 120 (410)
.++.++|.++|-+|.+... -+..+..+|.+.|.+.|..+.|+.+-+.+..+.--+. ......|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4577888888888887432 2455667788888888899999888888876421111 22344567778888888999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc----HHHHHHHHHHHHhccchhHHHHHHHH
Q 015246 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (410)
..+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+. ...|-.+...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999988887532 2556777888888888889999888888877655443 34466677777778888888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 015246 197 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 276 (410)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 276 (410)
..+.+ +.....--.+.......|+++.|.+.++.+.+.++.--+.+...+..+|.+.|+.++....+.++.+... ..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 88775 5556666667788888899999999999888876655567778888889999999988888888887643 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHhhcc
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK---DGKIDHAINVFESMEV 339 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 339 (410)
..-..+...-....-.+.|...+.+-... .|+...+..++..-.. .|...+....++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33444445445555566676666665553 6888888888876543 3445555666666643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.3e-13 Score=108.32 Aligned_cols=324 Identities=15% Similarity=0.061 Sum_probs=235.8
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCH-H-HHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL-V-TYNIL 142 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l 142 (410)
|...+-...-.+.+.|....|...|......- |-.-.+|..|.... .+.+. ...+... .+.+. . .=-.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHhc-CcccchHHHHHHH
Confidence 44444444445556777888888877766442 33334444443332 22222 2222221 22111 1 11223
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHc
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF---DGFGYCTVIAAFVKI 219 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 219 (410)
..++....+.+++..-.+...+.|.+.+...-+....+.....|+++|+.+|+++.+.. |- |..+|+.++-. +.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv--~~ 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV--KN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH--Hh
Confidence 45666667888888888888888887676666667777888999999999999999884 32 45566666533 32
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
.+.. ...+.+-...--+-.+.|...+..-|.-.++.++|...|++..+.+. -....|+.+..-|....+...|...+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2211 12222211111223557778888889999999999999999998863 35667888899999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 015246 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 376 (410)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 376 (410)
+..++.+ +.|...|..+.++|.-.+.+.-|+-.|++...- |+..|.+|+.+|.+.++.++|++.|.++...| ..+
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 9999974 668899999999999999999999999988654 99999999999999999999999999999876 557
Q ss_pred HhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 377 KSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
...+..++..|.+.++.++|.+.+++..+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 78899999999999999999999998765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-13 Score=106.10 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=221.1
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHH
Q 015246 77 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLR 153 (410)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 153 (410)
.-.++.++|.++|-+|.+.+ +.+..+..+|.+.|.+.|..|.|+++...+.++.--+. ......|.+-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34578999999999999765 56667778899999999999999999999987621111 234566788899999999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHH
Q 015246 154 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD----GFGYCTVIAAFVKIGRLKEATDYM 229 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 229 (410)
.|+.+|..+.+.+. .-......|+..|-...+|++|++.-+++.+.+-.+. ...|..+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999987543 3456778899999999999999999999988753332 235777888888889999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 015246 230 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 309 (410)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (410)
.+..+.+.+ ....--.+.+.....|+++.|.+.|+.+.+.+..--+.+...+..+|...|+.++...++..+.+.. +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 999886433 4455556777889999999999999999998665556788889999999999999999999998864 4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHh---cCChhhHHHHHHHHHHc
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKS 371 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~ 371 (410)
....-..+........-.+.|...+.+-... +...+..++..-.. .|+..+-+..++.|+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4444445555554555566666655544433 55667777766543 45567777788888744
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-14 Score=122.03 Aligned_cols=277 Identities=13% Similarity=0.059 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
..+|...|..+... +.-+......+..+|...+++++|..+|+.+.+... .-+...|.+.+-.+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 34455555553322 122233444455555555555555555555544310 11334444443322211 111111
Q ss_pred H-HHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 015246 160 K-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 238 (410)
Q Consensus 160 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 238 (410)
- .+.+. -+..+.+|-.+..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 1 11111 12234555555555555555555555555555543 334555555555555555555555555555432
Q ss_pred CChhhHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 015246 239 LDIVSYNT---LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 315 (410)
Q Consensus 239 ~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 315 (410)
++..|++ +...|.+.++++.|+-.|+.+.+-+ +.+......+...+.+.|+.++|+.+++++.... +.|+..-.
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 3333332 3344555555555555555555543 2244444555555555555566666665555442 22333333
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
..+..+...+++++|+..++++... +...+..++..|.+.|+.+.|+.-|--+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3344455555566665555555443 4445555556666666666666666555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-14 Score=119.36 Aligned_cols=288 Identities=14% Similarity=0.068 Sum_probs=212.6
Q ss_pred CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCC--CCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 45 SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD--LTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
-+..+|...|+.+... +..+..+...+.++|...+++++|.++|+.+.+.. .-.+..+|.+.+.-+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567888888885554 34455777788889999999999999999887652 12345667666554322 22333
Q ss_pred HHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 123 MFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 123 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
.+.+ +... .+-.+.+|..+.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 3332 3333 3447789999999999999999999999988874 34 6778888888888888999999999888854
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 015246 201 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 280 (410)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 280 (410)
. +.+-.+|-.+...|.+.++++.|+-.|++..+.++. +......+...+.+.|+.++|+.+++++.....+ |+..-.
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 3 333344555677888999999999999998886433 5666777777888899999999999998877533 555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchh
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 344 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (410)
..+..+...+++++|+..++++.+. .+.+..++..+...|.+.|+.+.|+.-|.-+...++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6677778889999999999999885 34456677788888999999999988888776664443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-11 Score=100.31 Aligned_cols=254 Identities=8% Similarity=-0.017 Sum_probs=172.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
.++++..|..+|+..+..+. .+...|...+.+-.+...+..|..++++....- |.-...|...+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHH
Confidence 46678889999999987653 366677788888889999999999999988653 3334566666666667899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC
Q 015246 123 MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 202 (410)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (410)
+|+.-..- .|+...|++.++.=.+.+.++.|..++++..- +.|+..+|......-.+.|....+..+|+.+.+.--
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99999874 78999999999999999999999999999886 358999999999999999999999999998876511
Q ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH--------HHHHHhC
Q 015246 203 --TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD--IVSYNTLINLYCKEGKLEAAYLL--------LDEMEKQ 270 (410)
Q Consensus 203 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~ 270 (410)
......+.++...-.++..++.|.-+|.-.+.. ++.+ ...|..+...--+-|+.....+. ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 112334444444445566777777777766654 2222 22333333222233332222211 1222222
Q ss_pred CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 271 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
+ +.|..+|...++.-...|+.+...+++++.+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 2 23444455555555555555555555555554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-13 Score=118.51 Aligned_cols=250 Identities=14% Similarity=0.118 Sum_probs=145.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 015246 17 TILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD 96 (410)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 96 (410)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988888888899999999999988887765
Q ss_pred CCCChhHHHHHHHHHhhcCchHHHHHHHHH-HHh-------CCCCCCHHH--------------HHHHHHHHHhcCCHHH
Q 015246 97 LTPCTATFNIMLNGLCKNRYTDNALRMFRG-LQK-------HGFVPELVT--------------YNILIKGLCKAGRLRT 154 (410)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~-------~~~~~~~~~--------------~~~l~~~~~~~~~~~~ 154 (410)
.|...+|..|..+|...||... ++..++ +.. .|+.....- -...+....-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788999999999999999776 222222 211 111100000 0111222222333344
Q ss_pred HHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc-hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 155 ARWILKELGDSGHAPNAITYTTIMKCCFRNRK-YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
+++++..+.......... . +++-+..... +++-..+.....+ .++..+|..++.+-...|+.+.|..++..|.
T Consensus 158 llkll~~~Pvsa~~~p~~-v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQ-V--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccchHH-H--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 444443332221111000 0 1222222111 1221211111111 3555566666666566666666666666666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 015246 234 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 288 (410)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (410)
+.|.+.+..-|-.++-+ .++...+..+++.|.+.|+.|+..|+...+..+..
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66665555555555433 55555555556666666666666666555555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-14 Score=109.22 Aligned_cols=234 Identities=12% Similarity=-0.003 Sum_probs=190.3
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
|..--..+..+|.+.|.+.+|.+.++..++. .|-+.||..+-.+|.+..+++.|+.++.+-.+. .+.++.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333466778999999999999999888877 566778888889999999999999999888875 4445555667778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (410)
.+...++.++|.++++...+.. +.+......+...|.-.++++-|+.+++++.+.|. .+++.|+.+.-+|...+.+|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 8888899999999999988764 34566666677778888999999999999999885 477888888889999999999
Q ss_pred HHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 330 AINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 330 A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
++..|++.... -..+|..+.......|++.-|.+.|+-++.++ +.+...++.+.-.-.+.|+.++|+.+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 98888877654 45678888888888999999999999988775 556788888888888999999999999888
Q ss_pred HHccCC
Q 015246 404 RMAKIS 409 (410)
Q Consensus 404 ~~~~~~ 409 (410)
....|+
T Consensus 456 ~s~~P~ 461 (478)
T KOG1129|consen 456 KSVMPD 461 (478)
T ss_pred hhhCcc
Confidence 766553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-11 Score=102.63 Aligned_cols=400 Identities=12% Similarity=0.037 Sum_probs=259.3
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH----HHcC---------CCCChHh
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEM----LEMG---------IPPDVWS 68 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~---------~~~~~~~ 68 (410)
+.+++.-.|++++|..+...-.-. ..|..+......++.+..++++|..++... .... +.+|..-
T Consensus 55 ~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~ 132 (611)
T KOG1173|consen 55 LAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAG 132 (611)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccc
Confidence 345666667777777776655432 356777777777888888888888887722 1100 0011100
Q ss_pred ----HHH-------HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc-----------------C-chHH
Q 015246 69 ----YNS-------LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN-----------------R-YTDN 119 (410)
Q Consensus 69 ----~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~-~~~~ 119 (410)
-+. -...|....+.++|...|.+.+..++ ..-..+..++....-. + +.+.
T Consensus 133 ~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~ 211 (611)
T KOG1173|consen 133 EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVER 211 (611)
T ss_pred ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHH
Confidence 000 11233344566777777776653321 1111222222211110 1 1111
Q ss_pred HHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh
Q 015246 120 ALRMFRGLQK----------------HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 183 (410)
Q Consensus 120 a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (410)
...+|+-... .+..-++........-+...+++.+..++.+.+.+.. ++....+..-|.++..
T Consensus 212 l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~e 290 (611)
T KOG1173|consen 212 LEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYE 290 (611)
T ss_pred HHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHH
Confidence 1111211100 0122234444455566677888888888888887753 3455555555667788
Q ss_pred ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015246 184 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 263 (410)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 263 (410)
.|+..+-..+-.++.+.- |....+|-.+...|...|+..+|.+.|.+....+.. =...|-.+...|...|..++|...
T Consensus 291 l~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 291 LGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred hcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHH
Confidence 888777777777777663 666777888888888888999999998887764222 245677788888888888888888
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 264 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
+..+-+.- +-....+..+..-|.+.++.+.|.++|...... .+.|+.+.+.+.-.....+.+.+|...|+.....
T Consensus 369 Y~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 369 YFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 88776542 112223444555677888899999999888775 3556777888877777888999999998876633
Q ss_pred -------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 341 -------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 341 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
...+++.|+.++.+.+.+++|+..+++.+... +.+..++..++-.|...|+++.|...|.+....++++
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 23357888899999999999999999998774 6688899999999999999999999999888777653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-11 Score=103.11 Aligned_cols=284 Identities=12% Similarity=-0.019 Sum_probs=220.1
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHH
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 177 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 177 (410)
..+.........-+...+++.+..++.+.+.+. .++....+..-|.++...|+..+-..+=.++.+. .+..+.+|-.+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 445555566667777889999999999998886 4557777777777888888888877777777764 34467888888
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 257 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 257 (410)
.-.|...|...+|.+.|.+....+ +.-...|..+..+|...|..++|...+....+. .+.....+--+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 888888899999999999888665 334567888889999999999999999888765 222333333444567888999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHccCChHHHH
Q 015246 258 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI------GFDSNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
+.|.+.|.+..... +.|+...+.+.-.....+.+.+|..+|+..... ...-...+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999988764 447778888887778889999999999887632 01113456788889999999999999
Q ss_pred HHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 332 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 332 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+++.... +..++..++-.+...|+++.|++.|.+.+ .+.|+..+-..++..+.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 999987654 88899999999999999999999999998 55787766666665443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-12 Score=116.72 Aligned_cols=269 Identities=12% Similarity=0.057 Sum_probs=191.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh---------cCChhHHHHHHHHHh
Q 015246 28 SPDVVTYNSLIAGATR-----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ---------LGKPDEANRVFQDMI 93 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 93 (410)
+.+...|...+++... .+++++|.+.|++..+.... +...+..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666655555321 34689999999999886422 45566666655442 345789999999999
Q ss_pred cCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHH
Q 015246 94 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 173 (410)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (410)
+.+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 886 6678888889889999999999999999999874 336778888899999999999999999999886543 2223
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
+..++..+...|++++|...++++.....+.+...+..+..++...|+.++|...+.++... .+.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhc
Confidence 33445556778999999999999887642334555777888889999999999999987664 22234445566666777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 254 EGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
.| +.|...++.+.+.. -.+.. .......+.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777765432 11211 22244455666777777666 7777653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-11 Score=100.27 Aligned_cols=367 Identities=13% Similarity=0.029 Sum_probs=237.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
+.....-|.++|++++|++.|.+..+. .|+ +..|.....+|...|+|+++.+--...++.+ +.-+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 344556788899999999999999884 466 7788889999999999999999888877654 223445666667777
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh---------
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR--------- 183 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 183 (410)
..|++++|+.=+.-..-.+.-.|..+--.+=+.+-+.+ ...+.+-+..= ...+-|+.....+....+..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~n-r~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKEN-RPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhccc-CCCCCCcHHHHHHHHhhccccccccccCC
Confidence 78888887654433322211112222111111111111 11222222200 01122333333333322211
Q ss_pred ----------------cc---chhHHHHHHHHHHHcC-CCC-----Ch------hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 015246 184 ----------------NR---KYKLGLEILSAMKRKG-YTF-----DG------FGYCTVIAAFVKIGRLKEATDYMEQM 232 (410)
Q Consensus 184 ----------------~~---~~~~a~~~~~~~~~~~-~~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~~ 232 (410)
.+ .+..+...+.+-.... ..+ |. .+.......+.-.|+.-.+..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 01 1222222222211100 011 11 11222222344568888999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 015246 233 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 312 (410)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 312 (410)
++....+ ...|-.+...|...++.++.+..|++..+.+ +-++.+|..-.+...-.+++++|..-|++.+... +.+..
T Consensus 353 I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~ 429 (606)
T KOG0547|consen 353 IKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAY 429 (606)
T ss_pred HhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhH
Confidence 8874443 3337777788999999999999999999886 3377888888888899999999999999999853 33456
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-----CcHhhH--HH
Q 015246 313 AYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR-----ILKSAQ--KA 382 (410)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~--~~ 382 (410)
.|..+..+..+.++++++...|++...+ .+..|+.....+...++++.|.+.|+.+++.... .+...+ ..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 6777777788999999999999999887 7889999999999999999999999999865311 122222 22
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 383 VVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 383 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
++..-++ +++..|..++++..+.+|.
T Consensus 510 ~l~~qwk-~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 510 LLVLQWK-EDINQAENLLRKAIELDPK 535 (606)
T ss_pred Hhhhchh-hhHHHHHHHHHHHHccCch
Confidence 2222244 8999999999999887763
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-10 Score=98.22 Aligned_cols=386 Identities=13% Similarity=0.078 Sum_probs=249.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+...+++...++..+.+.+. .+....+.....-.+...|+-++|........+.++. +...|..+.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHH
Confidence 34567788888888888774 2344455555555666788888888888887776543 667788777777778889999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
.+.|......+ +.|...+.-+.-.-++.|+++........+.+. .+.....|..++.++.-.|+...|..+++...+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888776 777888887777777888888888877777765 2235567777888888888888888888888765
Q ss_pred C-CCCcHHHHHHHHH------HHHhccchhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 015246 166 G-HAPNAITYTTIMK------CCFRNRKYKLGLEILSAMKRKGYTFDGFGY-CTVIAAFVKIGRLKEATDYMEQMVTDGV 237 (410)
Q Consensus 166 ~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (410)
. ..|+...+..... .....|.++.|.+.+...... ..|...+ ..-...+.+.+++++|..++..++..
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 4 2455555543332 334566677776666554433 2222222 23445667788888888888888875
Q ss_pred CCChhhHH-HHHHHHHhcCCHHHHH-HHHHHHH----------------------------------hCCCCCchHHHHH
Q 015246 238 QLDIVSYN-TLINLYCKEGKLEAAY-LLLDEME----------------------------------KQGFECDKYTHTI 281 (410)
Q Consensus 238 ~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~ 281 (410)
.||..-|. .+..++.+-.+.-++. .+|.... +.|+++ ++..
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 34444433 3333443222222222 3443332 222221 1222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh---c---C------------CCCCHHHH--HHHHHHHHccCChHHHHHHHHhhccCC
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNK---I---G------------FDSNLEAY--NCIVDRLGKDGKIDHAINVFESMEVKD 341 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~---~---~------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (410)
+...|-.. ...- +++++.. + | -+|+...| ..++..+-+.|+++.|...++......
T Consensus 326 l~SLyk~p---~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 326 LRSLYKDP---EKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hHHHHhch---hHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22222111 1111 2222210 0 0 14555444 456778889999999999999988875
Q ss_pred chh---HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 342 SFT---YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 342 ~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
+.. |..-.+.+...|+.++|..++++..+.+ .+|...-..-+....+.++.++|.++..+.-+.|
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 544 4444678889999999999999998776 5555544456666788999999999988876655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-10 Score=96.44 Aligned_cols=387 Identities=14% Similarity=0.033 Sum_probs=243.2
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
++.+...|++++|++..+++...+ +.+...+..-+.++.+.+++++|+.+.+.-... ..+...+..-+.+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455678899999999999999876 667778888888999999999999665543211 11111112234455688999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCC---------------------------C
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP---------------------------E 135 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~ 135 (410)
++|...++-.. +.+..+...-.+.+.+.+++++|+.+|+.+.+.+.+. .
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 99999988332 3344577777888999999999999999986653210 1
Q ss_pred HHHHHHHH---HHHHhcCCHHHHHHHHHHHhhC-------CCCC------cH-HHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 136 LVTYNILI---KGLCKAGRLRTARWILKELGDS-------GHAP------NA-ITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 136 ~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~-------~~~~------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
..+|..+. -.+...|++.+|+++++...+. +-.. .. ..-..+...+...|+.++|.+++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 12333332 3456789999999999988221 1111 11 112234456678899999999999998
Q ss_pred HcCCCCChhhHHHHHH---HHHHcCC-----------------HHHHHHHH-------------------------HHHH
Q 015246 199 RKGYTFDGFGYCTVIA---AFVKIGR-----------------LKEATDYM-------------------------EQMV 233 (410)
Q Consensus 199 ~~~~~~~~~~~~~l~~---~~~~~~~-----------------~~~a~~~~-------------------------~~~~ 233 (410)
+.+ ++|......... +.....+ .+.+...+ ++..
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 876 444432211111 1100000 00000000 0000
Q ss_pred HcCCCCC--hhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHH--------H
Q 015246 234 TDGVQLD--IVSYNTLINLY--CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE--------Y 301 (410)
Q Consensus 234 ~~~~~~~--~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 301 (410)
.. .++. ...+..++... ++...+..+.+++...-+....-...+....++.....|+++.|.+++. .
T Consensus 331 a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 331 AS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred Hh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 00 1111 12233333322 2223467777777777665322234556667778889999999999999 4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC------C----chhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------D----SFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+.+.+ ..+.+...+...+.+.++.+.|..++.+.... . ...+..++..-.+.|+-++|..+++++.+.
T Consensus 410 ~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 410 ILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 55533 34566777888888888888888887776543 1 123333444455679999999999999986
Q ss_pred CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 372 GVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
. ++|..+...++.+|++. +++.|..+-.+
T Consensus 488 n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 488 N-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred C-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 4 78889999999988775 46666665443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-11 Score=111.09 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH---------hccchhHHHHHHHHHHHc
Q 015246 135 ELVTYNILIKGLCK-----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCF---------RNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 135 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 200 (410)
+...|...+++... .+++++|...|++..+..+ .+...|..+..++. ..+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45555555554322 2346788889998887532 23445555555443 224578899999999888
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 015246 201 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 280 (410)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 280 (410)
+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 6 6677788888888888999999999999998864 335667788888899999999999999999887433 223333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCC---chhHHHHHHHHHhcCC
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKR 357 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 357 (410)
.++..+...|++++|...++++.+...+.++..+..+..++...|++++|...+.++...+ ....+.+...+...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 4444566688899999999988765323345556777888889999999999998876653 334455555666666
Q ss_pred hhhHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 358 LPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 358 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
++|...++++.+. .-.+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777777776643 112222222 44455666777777766 6665544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-12 Score=100.65 Aligned_cols=165 Identities=12% Similarity=0.065 Sum_probs=70.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444445555555555555555544332 2334444444445555555555555555544432 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 015246 147 CKAGRLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (410)
...|++++|.+.+++...... ......+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 455555555555544443211 1112223333334444444444444444444332 22223333334444444444444
Q ss_pred HHHHHHHHH
Q 015246 226 TDYMEQMVT 234 (410)
Q Consensus 226 ~~~~~~~~~ 234 (410)
...+++...
T Consensus 189 ~~~~~~~~~ 197 (234)
T TIGR02521 189 RAYLERYQQ 197 (234)
T ss_pred HHHHHHHHH
Confidence 444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-12 Score=101.50 Aligned_cols=197 Identities=13% Similarity=0.048 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 015246 207 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 286 (410)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (410)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344455556666666666666666665542 2234555556666666666666666666666543 22344555566666
Q ss_pred HhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHH
Q 015246 287 CKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
...|++++|...+++..+... +.....+..+..++...|++++|...+++.... +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777766665321 122345555666777777777777777766554 4456777778888888888888
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 363 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
..++++.+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888766 3456666667777788888999988888877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-10 Score=101.56 Aligned_cols=125 Identities=17% Similarity=0.270 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
.+...|...|++++|..+++..++.. +..+..|..-...+-+.|++.+|.+.++....... -|...-+..+..+.+.|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCC
Confidence 33444555555555555555555542 11244444555555555555555555555555432 24444444555555555
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHH------H--HHHHHHHHccCChHHHHHHHHhh
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEA------Y--NCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
++++|..++....+.+..|.... | .....+|.+.|++..|++.|..+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555554433222111 1 22334555555555555544433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=102.62 Aligned_cols=227 Identities=11% Similarity=0.005 Sum_probs=197.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..+...|.+..++..|+.++.+-.+.- |.+........+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 66889999999999999999988775 4677889999999999999999999999988773 55666666788889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
++.++|.++++...+. .+.+++....+...|.-.++++.|+.+++++.+.|+. ++..|..+..+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999999987 3447777778888899999999999999999999965 8889999999999999999999999
Q ss_pred HHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 300 EYMNKIGFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 300 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++....-..|+ ..+|..+.......||+..|.+.|+-.... +...++.|...-.+.|+.++|..++..+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99886544444 567888888889999999999999988766 6678999998889999999999999998743
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-09 Score=91.53 Aligned_cols=394 Identities=11% Similarity=0.058 Sum_probs=226.7
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAG-ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
++.+.++|++-.....|+.....= +......|...+......+-++-+..+|++..+. ++..-+-.+..+++.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccc
Confidence 345667888888888888877542 2334457777777777778888888888888763 34446666777777888
Q ss_pred hhHHHHHHHHHhcCC------CCCChhHHHHHHHHHhhcCchH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015246 82 PDEANRVFQDMICGD------LTPCTATFNIMLNGLCKNRYTD---NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (410)
+++|.+.+..+.... .+.+...|..+....++..+.- ....+++.+...-...-...|..|...|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 888877776665321 1233333433333333222111 1112222222210000122344444444444444
Q ss_pred HHHHHHHHHHhhCCC-----------------------------------------------------------------
Q 015246 153 RTARWILKELGDSGH----------------------------------------------------------------- 167 (410)
Q Consensus 153 ~~a~~~~~~~~~~~~----------------------------------------------------------------- 167 (410)
++|..+|++....-.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 444444444322100
Q ss_pred -CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 015246 168 -APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240 (410)
Q Consensus 168 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (410)
+.+...|..-.. ...|+..+....+.++.+.- .| -...|..+...|-..|+++.|..+|++..+...+.-
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 011222221111 12344555555555555431 11 123466778888889999999999998877533211
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------C-------chHHHHHHHHHHHhcCChhHHHHHHH
Q 015246 241 ---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE----------C-------DKYTHTILIDGLCKAGNIKGARLHLE 300 (410)
Q Consensus 241 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (410)
..+|......-.+..+++.|++++++.....-. | +...|...+..-...|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 234555555556677888888888776532111 1 12345555555566788888888999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-----CchhHHHHHHHHHh---cCChhhHHHHHHHHHHcC
Q 015246 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~ 372 (410)
++.+..+. ++.+......-+-...-++++.+++++-... -...|+..+.-+.+ ....+.|..+|+++++ |
T Consensus 502 riidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 502 RIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 88886543 3444444444455566688888998887765 23456666655544 3457899999999998 6
Q ss_pred CCCcHh-h-HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 373 VRILKS-A-QKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 373 ~~~~~~-~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
++|... + |......-.+.|-...|..+++++-.
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777543 2 22223334567888889888888643
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-10 Score=101.45 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=207.1
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc----
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL---- 79 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 79 (410)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 5678899999999999886654 3344556778889999999999999999999998632 444455555555222
Q ss_pred -CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015246 80 -GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 157 (410)
Q Consensus 80 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 157 (410)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+| .+|+.+-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 35677788898887653 4433333333333332333 3455666777778765 355666666665555555566
Q ss_pred HHHHHhhC--------------CCCCcH--HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 015246 158 ILKELGDS--------------GHAPNA--ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 221 (410)
Q Consensus 158 ~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (410)
++...... .-+|+. .++..+...|...|++++|++.+++.++.. |..+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 66655332 112444 345666778889999999999999999885 4457788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH--------HHHHHHHHHHhcCChh
Q 015246 222 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY--------THTILIDGLCKAGNIK 293 (410)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~ 293 (410)
+.+|.+.++........ |...=+..+..+.+.|+.++|.+++....+.+..|... -......+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999987443 66666677788899999999999999997766433221 1244567889999999
Q ss_pred HHHHHHHHHHh
Q 015246 294 GARLHLEYMNK 304 (410)
Q Consensus 294 ~a~~~~~~~~~ 304 (410)
.|+..|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-09 Score=94.78 Aligned_cols=128 Identities=17% Similarity=0.066 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhc
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 355 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 355 (410)
|......+...+..+++...+.+..+. .+.....|......+...|...+|.+.|...... ++.+..++..++.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 445566677888889999888888775 3455677777778888999999999999977655 667788899999999
Q ss_pred CChhhHHH--HHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 356 KRLPSASK--LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 356 ~~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
|+..-|.. ++..+++.+ +.+...|..++..+.+.|+.++|..+|.-..+...
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99888877 999999887 77899999999999999999999999998876543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-09 Score=86.89 Aligned_cols=385 Identities=12% Similarity=0.090 Sum_probs=201.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
-+....++..|+.+++.-...+-.....+-.-+..++.+.|++++|...|..+.+. -.++...+..|..++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 34556778888888877665442222233333556677889999999988888774 34566667777777777888888
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
|.++-.... .++-.-..|.+...+.++-++-..+-+.+.+. ...--+|.......-.+.+|++++.+...
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888766543 22333334445555566655555555554432 12222333444444456777777777765
Q ss_pred CCCCCcHHHHHHHH-HHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc--CCHHHHH--H----------HH
Q 015246 165 SGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI--GRLKEAT--D----------YM 229 (410)
Q Consensus 165 ~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~--~----------~~ 229 (410)
.+ |+....+..+ -+|.+..-++.+.+++.-..+.- +.++...+..+....+. |+..+.+ . ..
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 32 4444444433 34555666666666666655541 22333333222222211 1111110 0 11
Q ss_pred HHHHHcC------------CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH-----------
Q 015246 230 EQMVTDG------------VQL-----DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI----------- 281 (410)
Q Consensus 230 ~~~~~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 281 (410)
+.+.+++ +-| -+..-..++--|.+.++..+|..+.+++... .|-......
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcC
Confidence 1111110 000 0112222333455666666666665554321 122211111
Q ss_pred ------------------------------HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 015246 282 ------------------------------LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 282 ------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
+...+.-..++++.+.+++.+... +..|...-..+.++++..|.+.+|.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHH
Confidence 112222223344444444444433 2222222234567777788888888
Q ss_pred HHHHhhccC---CchhHH-HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHH-HHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 332 NVFESMEVK---DSFTYS-SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA-VVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 332 ~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
++|-++..+ +..+|. .+.++|.+++.++-|-.++-++ +-+.+...+.. +..-|.+.|.+=-|.+.|..+...
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 888777665 445554 4567778888888776665554 32333333333 345688888887777888877776
Q ss_pred cCC
Q 015246 407 KIS 409 (410)
Q Consensus 407 ~~~ 409 (410)
+|.
T Consensus 491 DP~ 493 (557)
T KOG3785|consen 491 DPT 493 (557)
T ss_pred CCC
Confidence 653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-10 Score=91.25 Aligned_cols=367 Identities=12% Similarity=0.097 Sum_probs=222.2
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--------------------
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI-------------------- 62 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 62 (410)
..++.+.|++++|+..++.+.+.. .++...+..+..++.-.|.+.+|..+-....+...
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 356788999999999999998865 56777777777777778888888776655432100
Q ss_pred -----CCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH-HHHHHhhcCchHHHHHHHHHHHhCCCCCCH
Q 015246 63 -----PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI-MLNGLCKNRYTDNALRMFRGLQKHGFVPEL 136 (410)
Q Consensus 63 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (410)
.....--.+|.......-.+++|.+++.+++.. .|.-...|. +.-+|.+..-++-+.++++-..+. ++.++
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSt 219 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDST 219 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcH
Confidence 000111122333333344577888888887755 344444443 344666777777788888777765 44345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH--------------hhCCC------------CC-----cHHHHHHHHHHHHhcc
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKEL--------------GDSGH------------AP-----NAITYTTIMKCCFRNR 185 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~~------------~~-----~~~~~~~l~~~~~~~~ 185 (410)
...|..+....+.-+-..|..-.+.+ .+.++ -| -+..-..++-.|.+.+
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccc
Confidence 55554443333221111111111111 11100 01 1222334455677888
Q ss_pred chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCH
Q 015246 186 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-------RLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKL 257 (410)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 257 (410)
+..+|..+.+++. |.++.-|..-.-.+...| ...-|.+.|+-.-+.+..-| ..--..+..++.-..++
T Consensus 300 dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 300 DVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 8888888777655 333333333223333333 24455666655544443323 23345566677777889
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 015246 258 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
++++..++.+..--.. |......+.++.+..|++.+|.++|-.+....++.+..-...+..+|.+.+.++.|+.++-++
T Consensus 376 ddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 9999998888765333 333334578899999999999999988876544444433455678899999999999999887
Q ss_pred ccC-Cch-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhH
Q 015246 338 EVK-DSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 380 (410)
Q Consensus 338 ~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 380 (410)
..+ +.. ....+..-|.+.+.+--|.+.|+.+... .|++..|
T Consensus 455 ~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 455 NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 766 333 3444556778888888888888887654 4555444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-09 Score=90.42 Aligned_cols=385 Identities=14% Similarity=0.086 Sum_probs=259.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+...|+-++|.+....-.+.+ ..+...|..+.-.+...+++++|++.|......+. .|...+.-+.-.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhH
Confidence 456788999999988888755 56788999999889899999999999999998653 3677888887778888898888
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHH
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILI------KGLCKAGRLRTARWI 158 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~ 158 (410)
...-..+.+.. +.....|..++.++.-.|+...|..+++...+.. ..|+...+.... ......|.++.|.+.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88877777654 4556778888889999999999999999988764 245665554332 334567777888777
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHHcC-CHHHHHHHHHHHHHc-
Q 015246 159 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT-VIAAFVKIG-RLKEATDYMEQMVTD- 235 (410)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~a~~~~~~~~~~- 235 (410)
+...... +......-..-...+.+.+++++|..++..++.. .||...|.. +..++.+.. ..+....+|....+.
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 7665442 1112222234456778889999999999999888 455554443 334443222 222222444444332
Q ss_pred ---------------------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--------CC---
Q 015246 236 ---------------------------------GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------QG--- 271 (410)
Q Consensus 236 ---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~--- 271 (410)
|++ .++..+...|-.....+ +++++.. .|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCC
Confidence 221 11222222221111111 3332211 11
Q ss_pred -------CCCchH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhccC-
Q 015246 272 -------FECDKY--THTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESMEVK- 340 (410)
Q Consensus 272 -------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 340 (410)
-+|... ++..+++.+-..|+++.|..+++....+ .|+ ++.|..-.+.+...|++++|...+++..+.
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 133333 4455778889999999999999999986 455 566777778999999999999999998877
Q ss_pred --CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--c----HhhHHHH--HHHHhhcCCHHHHHHHHHHHHH
Q 015246 341 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--L----KSAQKAV--VDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 341 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
|...-..-+.-..+.++.++|.++.....+.|..- + .-.|..+ +.+|.++|++..|.+-|..+.+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 33333345566678999999999999888776411 1 1233333 4568889999888887776644
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-09 Score=86.06 Aligned_cols=267 Identities=10% Similarity=-0.036 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc-HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 134 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 212 (410)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (410)
.|......+...+...|+.++|...|++....+ |+ ........-.+.+.|+++....+...+.... .-....|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 344444455555555555555555555444321 11 1111111222234444444444444443321 1111112222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh
Q 015246 213 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 292 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (410)
+......++++.|..+-++.+..+.. +...+-.-...+...+++++|.-.|+...... +.+...|..++.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 22223334444444444444433111 22222222334444455555555554444331 22344455555555555555
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-ccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIV-DRLG-KDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
.+|...-+...+. ++.+..+...+. ..+. ....-++|.+++++....+| .....+...+...|+..+++.++++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 5544444443332 222333332221 1111 11122344444444443322 1233333444445555555555554
Q ss_pred HHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 368 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
.+.. .||....+.++..+...+.+++|.+.|....+.+|
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 4432 34444444455555555555555555544444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-11 Score=103.70 Aligned_cols=237 Identities=16% Similarity=0.111 Sum_probs=176.4
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHc-----C-CCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRK-----G-YTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV 237 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 237 (410)
-..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++.+|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3556666888999999999999999987765 1 123333 3344777889999999999999998764 21
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhc---
Q 015246 238 --QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-----GF-ECD-KYTHTILIDGLCKAGNIKGARLHLEYMNKI--- 305 (410)
Q Consensus 238 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 305 (410)
+.-..+++.|..+|.+.|++++|...+++..+- +. .|. ...++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 112346777788899999999998888876431 11 222 234666777888999999999999876542
Q ss_pred CCCC----CHHHHHHHHHHHHccCChHHHHHHHHhhccC-----------CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 306 GFDS----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 306 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
-+.+ -..++..+...|...|++++|.++++++... ....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1122 2467889999999999999999999988654 234577888899999999999998887653
Q ss_pred c------CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 371 S------GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 371 ~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
- +.+....+|..|..+|.+.|+++.|.++.+++...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2 22223568899999999999999999999887643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-10 Score=95.15 Aligned_cols=226 Identities=13% Similarity=-0.039 Sum_probs=159.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-CCCc--HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 146 LCKAGRLRTARWILKELGDSG-HAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
....+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 344566788888888887642 2222 4567777888899999999999999999886 66788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
++|...|+...+..+. +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...+++.
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999985322 46677888888999999999999999998764 33322222222344567899999999776
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc---cC-------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 303 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
... ..|+... ..+.. ...|+...+ ..++.+. .. ....|..++..+...|++++|+..|++.++.+
T Consensus 192 ~~~-~~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEK-LDKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hhh-CCccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 543 2333222 22222 334554433 2333332 11 34578899999999999999999999999775
Q ss_pred CCCcHhhHH
Q 015246 373 VRILKSAQK 381 (410)
Q Consensus 373 ~~~~~~~~~ 381 (410)
+|+..-+.
T Consensus 267 -~~~~~e~~ 274 (296)
T PRK11189 267 -VYNFVEHR 274 (296)
T ss_pred -CchHHHHH
Confidence 44544443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-08 Score=84.69 Aligned_cols=260 Identities=11% Similarity=0.074 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc---HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCC-----------C
Q 015246 139 YNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----------F 204 (410)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~ 204 (410)
|..+...|-..|+++.|..+|++..+...+-- ..+|..-...-.+..+++.|.++++......-+ +
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 44455555556666666666665554322111 223333333334445555555555544322100 0
Q ss_pred ------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch-H
Q 015246 205 ------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK-Y 277 (410)
Q Consensus 205 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 277 (410)
+...|...+..-...|-++....+++.+.+..+. ++.........+-.+.-++++.+++++-...=..|+. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1122333333334445555555555555554332 2222222222233344455555555544433222332 2
Q ss_pred HHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHccCChHHHHHHHHhhccC-----CchhHHH
Q 015246 278 THTILIDGLCK---AGNIKGARLHLEYMNKIGFDSNLEAYNCIV--DRLGKDGKIDHAINVFESMEVK-----DSFTYSS 347 (410)
Q Consensus 278 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 347 (410)
.|+..+..+.+ ...++.|..+|++.++ |.+|...-+..++ ..--+.|-...|..++++.... -...|+.
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni 627 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34433333322 2356777777777777 4555432222222 2223446666677777766544 1223444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHH---HHHHHHhhcCCHHHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK---AVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~ 402 (410)
.|.--...=-+.....+|+++++. -|+...-. .....-++.|..+.|+.++..
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 443322222233444455555543 22222211 112223455555555555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-10 Score=92.36 Aligned_cols=224 Identities=12% Similarity=-0.028 Sum_probs=155.2
Q ss_pred HHhhcCchHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGF-VP--ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 186 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (410)
.....+..+.++.-+.++..... .| ....|..+...+...|++++|...|++..+..+ .+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCC
Confidence 33445677788888888875421 22 245577788888999999999999999888643 367888889999999999
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 187 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
+++|...|++..+.. +.+..++..+..++...|++++|.+.++...+.. |+..............++.++|...+.+
T Consensus 114 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999998875 4556778888888889999999999999988753 3322222222234456789999999977
Q ss_pred HHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CC---CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 267 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI---GF---DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..... .|+... .. ......|+...+ ..+..+.+. .. +.....|..+...+...|++++|...|++....
T Consensus 191 ~~~~~-~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 65432 222221 22 223345555444 344444421 11 112457888899999999999999999988876
Q ss_pred Cc
Q 015246 341 DS 342 (410)
Q Consensus 341 ~~ 342 (410)
++
T Consensus 266 ~~ 267 (296)
T PRK11189 266 NV 267 (296)
T ss_pred CC
Confidence 54
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-10 Score=83.48 Aligned_cols=199 Identities=15% Similarity=0.046 Sum_probs=135.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 147 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (410)
+...|.-.|...|++..|.+-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..+... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34455666777777777777777777765 55667777777777777777777777777776532 25666777777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCC-CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 015246 148 KAGRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (410)
..|.+++|...|++......- -...+|..+.-|..+.|+++.|...|++.++.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777777654211 124566667777777777777777777777664 444555666667777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
..++.....+. ++..+.-..|+.-...|+.+.+.+.=..+...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777766644 56666666666666777777666655555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-09 Score=86.81 Aligned_cols=295 Identities=13% Similarity=0.045 Sum_probs=216.9
Q ss_pred cCChhHHHHHHHHHhcC-CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015246 79 LGKPDEANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 157 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 157 (410)
.++...+.+.+-.+... -++-|+.....+..++...|+.++|...|++....++- +........-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 44444454444433332 34678888999999999999999999999998875211 22222333445667888988888
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 015246 158 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 237 (410)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (410)
+...+.... .-....|-.-+.......++..|+.+.++.++.+ +.+...+..-...+...+++++|.-.|+..... -
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-a 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-A 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-c
Confidence 888776532 1233344444455567789999999999998876 556667777778889999999999999998875 2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH-HHHH-hcCChhHHHHHHHHHHhcCCCCC-HHHH
Q 015246 238 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI-DGLC-KAGNIKGARLHLEYMNKIGFDSN-LEAY 314 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 314 (410)
+-+...|.-++.+|...|++.+|...-+...+. ++.+..+...+. ..|. ....-++|.++++...+. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 347899999999999999999999888776654 233555555542 2222 233457899999988874 455 4566
Q ss_pred HHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHH
Q 015246 315 NCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 381 (410)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 381 (410)
..+...+...|..+.++.+++..... |....+.|...+...+.+++|++.|..++..+ |.|..+..
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~ 509 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLR 509 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHH
Confidence 77888999999999999999988766 88899999999999999999999999998664 33444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-09 Score=83.19 Aligned_cols=387 Identities=12% Similarity=0.056 Sum_probs=225.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHH-HHHHHHhcC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNS-LMHCLFQLG 80 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 80 (410)
++..+.+..++++|++++....+.. +.+......+..+|-...++..|-+.++++... .|...-|.. -...+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 4556678888888888888877764 347777888888888888888888888888764 344443332 244566778
Q ss_pred ChhHHHHHHHHHhcCCCCCChh--HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015246 81 KPDEANRVFQDMICGDLTPCTA--TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 158 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 158 (410)
.+..|+.+...|... |+.. +...-.......+++..+..++++....| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 888888888777542 2221 11112223345777888888887776432 344444445556688899999998
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC-------------Chh---------------hHH
Q 015246 159 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-------------DGF---------------GYC 210 (410)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~---------------~~~ 210 (410)
|+...+.+--.....|+.. -+..+.++++.|++...++.+.|++. |.. .++
T Consensus 167 FqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 8888775433344556543 45567788999999988888776431 111 123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
.-...+.+.++++.|.+.+..|.-+ ....|+.|...+.-. -..+++.+..+-+.-+...+. ....||..++-.|++.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 3333455677888888777776533 123455555544322 223455555565666666543 4566788888888888
Q ss_pred CChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHH-HHHH-HHhcCCh----hhHH
Q 015246 290 GNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS-MVHN-LCKAKRL----PSAS 362 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l~~~-~~~~~~~----~~A~ 362 (410)
.-++.|-.++.+-...... .+...|+.+=....-.-..++|.+-++.+...-..-... .+.. -.+..+- ..|+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8888877776542221111 123333333222333445666666655544331111111 1111 1111221 2233
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 363 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+-|++.++. -........+.|++..++..+.++|..-.
T Consensus 404 ~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 404 NEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 333333322 11233445566788899999999887643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-10 Score=95.61 Aligned_cols=232 Identities=17% Similarity=0.109 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCcHHH-HHHHHHHHHhccchhHHHHHHHHHHHc-----C--CC
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDS-----GH-APNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRK-----G--YT 203 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 203 (410)
+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333445555555555555555444331 10 122221 222444555555555555555555432 1 01
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 015246 204 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV-QLDI-VSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFE 273 (410)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 273 (410)
.-..+++.|..+|.+.|++++|...++...+- +. .|.. ..++.+...+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 11223444455555666655555555444321 11 1111 22344445566666666666666554321 111
Q ss_pred C----chHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C---CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 274 C----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----G---FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 274 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
+ -..++..+...|...|++++|.++++.++.. + ..-....++.+...|.+.+.+.+|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 1345666777777777777777777665532 1 1112345566666677777777666666654322
Q ss_pred --------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 341 --------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 341 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
...+|..|+..|...|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23456777777777777777777776655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-09 Score=87.58 Aligned_cols=359 Identities=16% Similarity=0.120 Sum_probs=203.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 83 (410)
+.+..|+++.|+..|.+..... +++...|..-..+|++.|++++|++=-.+-.+. .|+ ...|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4577899999999999999887 568889999999999999999998877776664 344 467888999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHH---HHHHHHHhC---CCCCCHHHHHHHHHHH----------H
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL---RMFRGLQKH---GFVPELVTYNILIKGL----------C 147 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~----------~ 147 (410)
+|...|.+-++.. +.+...++.+..++.......+.. .++..+... ........|..++..+ .
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999988775 667777777777762211000000 000000000 0000011111111111 1
Q ss_pred hcCCHHHHHHHHHHH-----hhC-------CCCC----------------------cHHHHHHHHHHHHhccchhHHHHH
Q 015246 148 KAGRLRTARWILKEL-----GDS-------GHAP----------------------NAITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 148 ~~~~~~~a~~~~~~~-----~~~-------~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
.-..+..+...+... ... +..| -..-...+.+...+..++..+++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 100111111111100 000 0000 011234456666666777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHHH
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN-------TLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~ 266 (410)
+....+.. .+..-++....+|...|.+......-....+.|.. ...-|+ .+..+|.+.++++.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 77766653 34444555566666666666666555555544322 111122 223345555666667666666
Q ss_pred HHhCCCCCchHH-------------------------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 267 MEKQGFECDKYT-------------------------HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 267 ~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
.......|+... ...-...+.+.|++..|...|.++++.. +.|...|....-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 544322222111 1112334456677777777777766653 44566666666777
Q ss_pred HccCChHHHHHHHHhhccCCch---hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 322 GKDGKIDHAINVFESMEVKDSF---TYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+.|.+..|+.-.+...+.++. .|..-+.++....+++.|++.|++.++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777776666655555333 3333444555566677777777776655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-09 Score=81.69 Aligned_cols=199 Identities=16% Similarity=0.102 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
+...+.-.|...|+...|..-+++.++.+. .+..++..+...|-+.|+.+.|.+.|+..++.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 455667788888999999999988888643 256778888888888899999999998888776 667788888888888
Q ss_pred hcCchHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 113 KNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
..|.+++|...|++..... ...-..+|..+.-+..+.|+++.|...|++..+.... ...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8889999999888887652 2223567778888888889999999998888775432 3456667778888888998888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
..++.....+ .++..+....++.-...|+.+.+-+.=..+...
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888888776 478888888888888888888888776666654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-08 Score=83.44 Aligned_cols=364 Identities=17% Similarity=0.098 Sum_probs=219.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 116 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (410)
=+..+...+++++|.+...++...+ +.+...+..-+-+.++.+.+++|+.+.+.-... ..+...+.--.-+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3566678899999999999999875 446677777777889999999999766542211 1111111122345557899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---------------------------C
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA---------------------------P 169 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~ 169 (410)
.++|+..++-+.+. +..+...-...+.+.|++++|..+|+.+.+.+.+ .
T Consensus 95 ~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 99999999833332 4456677788899999999999999998554321 0
Q ss_pred cHHHHHHHH---HHHHhccchhHHHHHHHHHHHcC-------CCCChh-------hHHHHHHHHHHcCCHHHHHHHHHHH
Q 015246 170 NAITYTTIM---KCCFRNRKYKLGLEILSAMKRKG-------YTFDGF-------GYCTVIAAFVKIGRLKEATDYMEQM 232 (410)
Q Consensus 170 ~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~ 232 (410)
...+|..+. ..+...|++.+|+++++...+.+ -..+.. .-..+..++-..|+.++|..++..+
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 122343333 34567899999999999883221 011111 1223444566789999999999998
Q ss_pred HHcCCCCChhhHHHHHHHHH---hcCC-HH----------------HHHHHH-------------------------HHH
Q 015246 233 VTDGVQLDIVSYNTLINLYC---KEGK-LE----------------AAYLLL-------------------------DEM 267 (410)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~---~~~~-~~----------------~a~~~~-------------------------~~~ 267 (410)
+..... |.........-+. .-.+ ++ .+..-| ++.
T Consensus 251 i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 887432 3322111111110 0000 00 000000 000
Q ss_pred HhC--CCCCchHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH--------
Q 015246 268 EKQ--GFECDKYTHTILIDGLCK--AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE-------- 335 (410)
Q Consensus 268 ~~~--~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------- 335 (410)
... +..| ...+..++..+.+ ...+..+..++....+........+.-..+......|+++.|.+++.
T Consensus 330 ~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 330 SASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 000 1111 2233333333322 12356666777666654322234556667778889999999999998
Q ss_pred hhccC--CchhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCc----HhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 336 SMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS--GVRIL----KSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 336 ~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
.+.+. .+.+...+...+.+.++.+.|..++.+++.. .-.+. ..++..++..-.+.|+.++|.+.++++.+.+
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 33332 5667777777888888888788777776632 00111 2334444444567799999999999998866
Q ss_pred CC
Q 015246 408 IS 409 (410)
Q Consensus 408 ~~ 409 (410)
++
T Consensus 489 ~~ 490 (652)
T KOG2376|consen 489 PN 490 (652)
T ss_pred Cc
Confidence 54
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-11 Score=104.14 Aligned_cols=271 Identities=16% Similarity=0.096 Sum_probs=157.2
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC
Q 015246 52 DLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (410)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45666777788888888888888888888888877 7877777777777788888888877777766665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-CCCCChhhHH
Q 015246 132 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYC 210 (410)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 210 (410)
.|.+.+|..|..+|...||+.. |+...+ -...+...+...|.-.....++..+.-. +.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 4677788888888888887665 222221 1122333444455544444444433211 2233332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
..+....-.|-++.+.+++..+...... .+ ...+++-... ...-..+++.......-.|++.+|..++.+-...|
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 2333344455666666665444322100 00 1111222221 22233333333332222467777777777777778
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC----CchhHHHHHHHHHhcCC
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 357 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~ 357 (410)
+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..++..|... +..++...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888777777776666665544 55555555555555443 55566555555555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-08 Score=85.65 Aligned_cols=92 Identities=18% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCh--hhHHHHHHHHH
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDI--VSYNTLINLYC 252 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 252 (410)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++....... |+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445555555555555555555543 333444455555555556666666555555543211 111 12334445555
Q ss_pred hcCCHHHHHHHHHHHH
Q 015246 253 KEGKLEAAYLLLDEME 268 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~ 268 (410)
..|++++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 5566666666665553
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-11 Score=96.46 Aligned_cols=248 Identities=13% Similarity=0.067 Sum_probs=141.6
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 188 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (410)
+-+.-.|.+..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445677777776555 222222223344555677788888766543 3333322 455555555544444334444
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 189 LGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 189 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
.++.-++......... +..........+...|++++|++++... .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444433332222 2222223334455667888888777542 35666667777888888888888888888
Q ss_pred HhCCCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 268 EKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.++.+....|++++|.+++.+....
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 7652 33444455554433 23577888888887654 5667777777888888888888888888776655
Q ss_pred CchhHHHHHHHHHhcCCh-hhHHHHHHHHHHc
Q 015246 341 DSFTYSSMVHNLCKAKRL-PSASKLLLSCLKS 371 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 371 (410)
++.+...++.+....|+. +.+.+.+.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 555666666666667776 4556666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-12 Score=73.95 Aligned_cols=47 Identities=40% Similarity=0.800 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 100 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.+++++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=73.78 Aligned_cols=49 Identities=45% Similarity=0.752 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLF 77 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (410)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-09 Score=84.63 Aligned_cols=351 Identities=13% Similarity=0.098 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH-HHHHHh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI-MLNGLC 112 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 112 (410)
+.+.+..+.+..++++|++++..-.++.. .+......|..+|....++..|-..++++... .|...-|.. -.+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 44455555556666666666655555421 14445555555666666666666666665543 233333321 234445
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIK--GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (410)
+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++.... .+..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 555666666666555442 12111111111 122345555555555554432 1223333333334455666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH--HH
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE--ME 268 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~ 268 (410)
.+-|+...+.+---....|+..+ +..+.++++.|.+...+++++|++..+..---+ . ..-++ +..+=+. |.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm----~-tegiD-vrsvgNt~~lh 236 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGM----T-TEGID-VRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc----e-eccCc-hhcccchHHHH
Confidence 66665555543222233344333 233445556666666666555554322210000 0 00000 0000000 00
Q ss_pred hCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHH--HccCChHHHHHHHHhhccCCchhH
Q 015246 269 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYNCIVDRL--GKDGKIDHAINVFESMEVKDSFTY 345 (410)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~ 345 (410)
..+ =...++.-...+.+.++++.|.+.+-.|--. ....|+.+...+.-.- .+-++--.-+.++-....-.+.+|
T Consensus 237 ~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 237 QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHH
Confidence 000 0112333333445678888887777666421 1223445554433222 222232233333333322277788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH-hhcCCHHHHHHHHHHH
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-RHSGCRREAKKIQSKI 403 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 403 (410)
..++-.|+++.-++-|..++.+=-..-+.--......++.++ ...-.+++|.+-++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888888888888888877776532221111122233455554 4456778887776665
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-08 Score=78.74 Aligned_cols=300 Identities=13% Similarity=0.045 Sum_probs=164.9
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY-NILI 143 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 143 (410)
++.-..-+...+...|++..|+.-|...++.+ +.+-.++..-...|...|....|+.=+....+. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44445566777777888888888887777543 333444444556777778888888878777764 4553322 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCc--HHHH------------HHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 144 KGLCKAGRLRTARWILKELGDSGHAPN--AITY------------TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
..+.+.|.++.|..-|+...+.....+ ...+ ...+..+...|+...++.....+++.. +.|...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 556778888888888888877543211 1111 112333455666777777777666654 5566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH----HHHHH---
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY----THTIL--- 282 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l--- 282 (410)
..-..+|...|++..|+.-+....+. ...+...+-.+-..+...|+.+.++...++..+. .||.. .|..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 66667777777777776666655554 2234555555566666677777777766666655 33322 11111
Q ss_pred HHH------HHhcCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHH
Q 015246 283 IDG------LCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVH 350 (410)
Q Consensus 283 ~~~------~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 350 (410)
... ....+++.++....+...+..... ....+..+-.++...|.+.+|++...++... |..++..-..
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 111 112334444444444444432110 1122233334444555555555555554443 3334444445
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 015246 351 NLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+|.-...++.|+.-|+.+.+.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhc
Confidence 555555555555555555543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.30 E-value=8e-08 Score=82.73 Aligned_cols=271 Identities=8% Similarity=-0.010 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCh-HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH--
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI-PPDV-WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI-- 106 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 106 (410)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..... |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44566666666677777777666666554321 1121 112222334566788888888888877654 444444442
Q ss_pred -HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 107 -MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 107 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
........+..+.+.+.++... ...+........+...+...|++++|...+++..+... .+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcC
Confidence 1111122344555555554411 11222334445566777888888888888888887542 34566777778888888
Q ss_pred chhHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCChhhH-H--HHHHHHHhcCCHH
Q 015246 186 KYKLGLEILSAMKRKGY-TFDG--FGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSY-N--TLINLYCKEGKLE 258 (410)
Q Consensus 186 ~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~ 258 (410)
++++|...+++...... .++. ..+..+...+...|++++|..++++...... .+..... + .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 88888888888776531 1222 2344677778888999999999888754322 1111111 1 1222223333322
Q ss_pred HHHHH--HHHH-HhCCC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 259 AAYLL--LDEM-EKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 259 ~a~~~--~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.+.+. +... ..... ............++...|+.+.|...++.+..
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22221 1111 11100 11111222455566677777888777777655
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-07 Score=80.64 Aligned_cols=377 Identities=13% Similarity=0.045 Sum_probs=233.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh-hHHH
Q 015246 27 ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT-ATFN 105 (410)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 105 (410)
+..+...|..+.-++...|+++.+.+.|++....-+ -....|..+...+...|.-..|..+++......-.|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 456778888888888889999999999988775433 25567888888888888888888888876554322433 3333
Q ss_pred HHHHHHh-hcCchHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCC
Q 015246 106 IMLNGLC-KNRYTDNALRMFRGLQKH--GF--VPELVTYNILIKGLCKA-----------GRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 106 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 169 (410)
.....|. +.+..++++.+-.++... +. ...+..|..+.-+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3333333 345666666666555541 11 11233444444444321 1245667777777665432
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
|+.....+.--|...++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. ...|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 223333344456677888999999999888865778888888888888889999999988887764 1112221112222
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---------------------CC-------CCchHHHHHHHHHHHhcCChhHHHHHHHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQ---------------------GF-------ECDKYTHTILIDGLCKAGNIKGARLHLEY 301 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 301 (410)
.-...++.++++.....+... |. .-...++..+..-....+....-...
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 223355555555444333210 00 00111222221111100000000000
Q ss_pred HHhcCCC--CC------HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 302 MNKIGFD--SN------LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 302 ~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
+.+.... |+ ...|......+.+.+..++|...+.+.... ....|...+..+...|...+|.+.|.....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 1111111 22 234556677888999999999888887766 556677777888899999999999999986
Q ss_pred cCCCCcHhhHHHHHHHHhhcCCHHHHHH--HHHHHHHccCCC
Q 015246 371 SGVRILKSAQKAVVDGLRHSGCRREAKK--IQSKIRMAKISH 410 (410)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~ 410 (410)
.+ |.++.....++..+.+.|+...|.. ++..+.+.++.+
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 64 4467888999999999999888877 899888888754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-07 Score=80.18 Aligned_cols=363 Identities=13% Similarity=0.040 Sum_probs=238.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-hhHHHHHHHHHhhcCch
Q 015246 39 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC-TATFNIMLNGLCKNRYT 117 (410)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 117 (410)
.+.+..|+++.|...|-+...... +|...|..-..+|+..|++++|.+=-.+-.+. .|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 456688999999999999988754 37778888999999999999998866665554 444 56788888999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHhhCC---CCCcHHHHHHHHHHHHhc-------
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA---RWILKELGDSG---HAPNAITYTTIMKCCFRN------- 184 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~------- 184 (410)
++|..-|.+-.+.. +.|...++-+..++.......+. -.++..+.... .......|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988863 33666777777766211000000 00111110000 000011122222111100
Q ss_pred cchhHHHHHHHHHH--------H-------cCCCC----------------------ChhhHHHHHHHHHHcCCHHHHHH
Q 015246 185 RKYKLGLEILSAMK--------R-------KGYTF----------------------DGFGYCTVIAAFVKIGRLKEATD 227 (410)
Q Consensus 185 ~~~~~a~~~~~~~~--------~-------~~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~ 227 (410)
.+.+...+....+. . .+..| -..-...+..+..+..+++.+.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00011111111000 0 00011 11236678888888999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH-------HHHHHHHhcCChhHHHHHHH
Q 015246 228 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT-------ILIDGLCKAGNIKGARLHLE 300 (410)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~ 300 (410)
-+....+.. .+..-++....+|...|.+..+...-....+.|-. ...-|+ .+..++.+.++++.++..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 999998864 46666777778899999888887777776665532 222222 34446667788899999988
Q ss_pred HHHhcCCCCCHHH-------------------------HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHH
Q 015246 301 YMNKIGFDSNLEA-------------------------YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 352 (410)
Q Consensus 301 ~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 352 (410)
+.......|+... ...-...+.+.|++..|...+.+++.. |...|.....+|
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 8765433333211 112245667889999999999988776 778899999999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+.|.+..|+.-.+..++.+ ++....|..-+.++....+++.|.+.|.+..+.++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999999998774 555666766677788888999999999988887764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-07 Score=92.63 Aligned_cols=333 Identities=13% Similarity=-0.002 Sum_probs=199.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCC--C----CCC--hhHHHHHHHHH
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD--L----TPC--TATFNIMLNGL 111 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~ 111 (410)
.....|+++.+..+++.+.......+..........+...|+++++..++......- . .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777766666655321111122233444555667888999888887765321 0 111 12222334455
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCcHHHHHHHHHHHH
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----GH-APNAITYTTIMKCCF 182 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~ 182 (410)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... +. .........+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788999999998887663111121 23455666677889999998888877542 11 111234455566778
Q ss_pred hccchhHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--ChhhHHHHHHHH
Q 015246 183 RNRKYKLGLEILSAMKRK----GYT--F-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQL--DIVSYNTLINLY 251 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 251 (410)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888876643 211 1 12234445556677799999988888775531 111 123344455677
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCchH--H-H-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHH
Q 015246 252 CKEGKLEAAYLLLDEMEKQG--FECDKY--T-H-TILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLG 322 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 322 (410)
...|+++.|...+....... ...... . . ...+..+...|+.+.|..++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999988888775421 111110 0 0 1112334557888888888776554211111 111345667788
Q ss_pred ccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 323 KDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
..|++++|...+++.... ...+...+..++...|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 889999998888877543 12345566677888999999999999888654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-07 Score=88.97 Aligned_cols=333 Identities=8% Similarity=-0.014 Sum_probs=213.3
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCC------CCC--HHHHHHHHHH
Q 015246 74 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF------VPE--LVTYNILIKG 145 (410)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 145 (410)
......|+++.+..+++.+.......+..........+...|+++++...+......-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653211112222334445566678999999999988754311 111 1122233455
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCcH----HHHHHHHHHHHhccchhHHHHHHHHHHHcCC---CC--ChhhHHHHHHHH
Q 015246 146 LCKAGRLRTARWILKELGDSGHAPNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGY---TF--DGFGYCTVIAAF 216 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 216 (410)
+...|+++.|...++.........+. ...+.+...+...|+++.|...+.+.....- .+ ...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999987663211221 2345556677889999999999988775311 11 123445566778
Q ss_pred HHcCCHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--chHHHHHHHHH
Q 015246 217 VKIGRLKEATDYMEQMVTD----GVQ--L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG--FEC--DKYTHTILIDG 285 (410)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~ 285 (410)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998887653 211 1 12234455566777899999999998875431 112 23344556677
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCCCHH--HH--HHHHHHHHccCChHHHHHHHHhhccC---Cch----hHHHHHHHH
Q 015246 286 LCKAGNIKGARLHLEYMNKIG--FDSNLE--AY--NCIVDRLGKDGKIDHAINVFESMEVK---DSF----TYSSMVHNL 352 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~l~~~~ 352 (410)
....|+++.|...++...... ...... .. ...+..+...|+.+.|...+...... ... .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999998875421 111111 00 11224445688999999998776554 111 134567778
Q ss_pred HhcCChhhHHHHHHHHHHc----CCCCc-HhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 353 CKAKRLPSASKLLLSCLKS----GVRIL-KSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988753 32222 245666777899999999999999988654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=87.44 Aligned_cols=81 Identities=21% Similarity=0.117 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh-hHHHHHHH
Q 015246 222 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI-KGARLHLE 300 (410)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~ 300 (410)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 33344444444444445555555555544444332 11333444444444444444 33444444
Q ss_pred HHHh
Q 015246 301 YMNK 304 (410)
Q Consensus 301 ~~~~ 304 (410)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-06 Score=69.45 Aligned_cols=304 Identities=13% Similarity=0.038 Sum_probs=217.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH-HHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTAT-FNIM 107 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 107 (410)
.++.-..-+...+...|++..|+.-|....+.++ .+-.++..-...|...|+...|+.=++++++. +||-.. -.--
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3445555677788889999999999988877421 12334444556788899999999988888865 566332 2233
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCC--HHH------------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHH
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPE--LVT------------YNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 173 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (410)
...+.+.|.++.|..=|+.+.+.....+ ... ....+..+...|+...|+.....+.+..+ -+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 4567889999999999999988643211 111 12234456678999999999999988533 37777
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh----HH---H
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS----YN---T 246 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~---~ 246 (410)
+..-..+|...|++..|+.-++...+.. ..+..++-.+-..+...|+.+.++...++.++. .|+... |. .
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 8888899999999999998888877765 445666666778888999999999999988874 444432 22 2
Q ss_pred HHHHH------HhcCCHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 015246 247 LINLY------CKEGKLEAAYLLLDEMEKQGFECDK---YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 317 (410)
Q Consensus 247 l~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 317 (410)
+...+ ...++|.++.+-.+...+....... ..+..+-.++...+++.+|++...++++.. +.|..++..-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dR 347 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 22222 2345677777777777665332122 234455566777899999999999999852 3348889989
Q ss_pred HHHHHccCChHHHHHHHHhhccC
Q 015246 318 VDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..+|.-...++.|+.-|+...+.
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999988766
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-08 Score=84.88 Aligned_cols=251 Identities=12% Similarity=0.036 Sum_probs=183.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH
Q 015246 144 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (410)
.-+.+.|++.+|.-.|+...+..+ -+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 345678889999889988887643 367888888888888888889999999998886 666777888888888889888
Q ss_pred HHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHhcCChhH
Q 015246 224 EATDYMEQMVTDGVQL--------DIVSYNTLINLYCKEGKLEAAYLLLDEME-KQGFECDKYTHTILIDGLCKAGNIKG 294 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (410)
.|.+.++..+...++- +...-.. ..+..........++|-++. ..+..+|+.+...|.-.|.-.|+++.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999988887642110 0000000 11112222344455555554 44445788888899888999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 295 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 295 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
|...|+.++... +.|..+|+.|...++...+.++|+..|.+.... -+.+...|..+|...|.+.+|.+.|-.++..
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999998853 456788999999999999999999999988766 4567788888999999999999988776633
Q ss_pred C---------CCCcHhhHHHHHHHHhhcCCHHHHHHH
Q 015246 372 G---------VRILKSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 372 ~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
. ..++...|..|-.++.-.++.|-+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 112345777777777777777755544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-08 Score=83.00 Aligned_cols=252 Identities=11% Similarity=-0.020 Sum_probs=139.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHH
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 119 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (410)
-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+..+.+ +.+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 344566666666666666554322 45566666666666666666666666666554 4455555566666666666666
Q ss_pred HHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHH-hhCCCCCcHHHHHHHHHHHHhccchhHH
Q 015246 120 ALRMFRGLQKHGFVP--------ELVTYNILIKGLCKAGRLRTARWILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 120 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (410)
|+.+++......++- +...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|...|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 666666654431100 0000000 0111111223333333333 3334345666666666677777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
.+.|+.++... |-|...|+.|...+....+.++|+..|.+.++. .|+ +.+...|.-+|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 77777777665 556667777777777777777777777777764 333 34444555567777777777776665532
Q ss_pred C---------CCCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 270 Q---------GFECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 270 ~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
. ...++...|..|=.++...++.+.+...
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1122344555555555556665544433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-06 Score=77.44 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=41.1
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc----------CC----------------CCC----HHHHHHHHHHHH
Q 015246 273 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----------GF----------------DSN----LEAYNCIVDRLG 322 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~----------------~~~----~~~~~~l~~~~~ 322 (410)
..|+...+....-+....++++|..++-...+. |+ .|+ ......+...|.
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 446666777777777777777776665443211 11 122 235566778888
Q ss_pred ccCChHHHHHHHHhhc
Q 015246 323 KDGKIDHAINVFESME 338 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~ 338 (410)
++|.+..|.+-|.+.-
T Consensus 1157 qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQAG 1172 (1416)
T ss_pred hccchHHHHHHHhhhh
Confidence 9999888877776543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-07 Score=80.58 Aligned_cols=314 Identities=18% Similarity=0.194 Sum_probs=179.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 114 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (410)
.+.++.+...|+-++|-++- .. +..+ .+.|..|.+.|.+..|......=. .+..|......+..++.+.
T Consensus 593 ~sy~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~ 661 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKG 661 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhh
Confidence 34455566666666654432 11 1122 235677888888777765432111 1123344444444444443
Q ss_pred CchHHHHHHHHHHHhC----------------------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcH
Q 015246 115 RYTDNALRMFRGLQKH----------------------GFVPELVTY-NILIKGLCKAGRLRTARWILKELGDSGHAPNA 171 (410)
Q Consensus 115 ~~~~~a~~~~~~~~~~----------------------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 171 (410)
.-+++|-.+|+++..- .++..+.+. ......+...|+++.|...|-+..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-------- 733 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------- 733 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------
Confidence 3344444443333210 011111111 112233344555555555443321
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
.....+.+......|.+|+.+++.+...+ .-..-|..+...|...|+++.|+++|.+. ..++-.+..|
T Consensus 734 -~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my 801 (1636)
T KOG3616|consen 734 -CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMY 801 (1636)
T ss_pred -hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHH
Confidence 12233456667788999999998888763 34455777888899999999999888553 2345667789
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
.+.|+|+.|.++-.+... .......|..-..-+-..|++.+|.+++-.+. .|+ ..+.+|-+.|..+..+
T Consensus 802 ~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMI 870 (1636)
T ss_pred hccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHH
Confidence 999999999888776643 23345556555666777888888877764332 243 3467888888888888
Q ss_pred HHHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHH
Q 015246 332 NVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 332 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
++.++.... -..+...+..-+-..|+..+|...|-++- -|..-+..|..++-|++|.++
T Consensus 871 rlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 871 RLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 888766554 33445555666666777777776665542 123334444444445544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-07 Score=83.17 Aligned_cols=219 Identities=14% Similarity=0.035 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 133 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 212 (410)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (410)
+|--..-..+...+...|-...|..+++++. .|...+.+|...|+..+|..+..+..++ +||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333344567788888899999999998664 4667888999999999999998888874 7888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh
Q 015246 213 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 292 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (410)
........-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888776443 11222223345788999999998877764 34667888888888889999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+.|.+.|...... -+.+...|+.+-.+|.+.|+-.+|...+.+..+- +...|.+.+....+.|.+++|++.+.++.
T Consensus 536 q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999888774 2445778999999999999999999999988776 66677778888889999999999998887
Q ss_pred Hc
Q 015246 370 KS 371 (410)
Q Consensus 370 ~~ 371 (410)
..
T Consensus 615 ~~ 616 (777)
T KOG1128|consen 615 DL 616 (777)
T ss_pred Hh
Confidence 43
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-06 Score=76.06 Aligned_cols=345 Identities=13% Similarity=0.098 Sum_probs=179.6
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-C--------CCCChHhHHHHHHHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM-G--------IPPDVWSYNSLMHCL 76 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~ 76 (410)
|...|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+-.|... | -.|+ ..=..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 455677777776666554 3456777777777777777665555554321 0 0111 1222223334
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015246 77 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 156 (410)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 156 (410)
...|.+++|..+|.+-.. |..|=..|-..|.+++|.++-+.-.+.. =..||......+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 456677777777766543 2234445556677777776655432221 2245555555566666777777
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 157 WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
+.|++... |--..+..|. .++.......+. ..|...|......+...|+.+.|+.+|.....
T Consensus 879 eyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCC----hHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 77765422 1111111111 112222222222 23445566666667778888888888876654
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCCHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG----FDSNLE 312 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 312 (410)
|-.+++..|-.|+.++|-++-++- -|...-..+.+.|...|++.+|..+|.+..... +.....
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566667778888887765542 244555667788888888888888877654310 000000
Q ss_pred HHHHHHHHHH--ccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHH--------HHHHcCCC--CcHhhH
Q 015246 313 AYNCIVDRLG--KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL--------SCLKSGVR--ILKSAQ 380 (410)
Q Consensus 313 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~--~~~~~~ 380 (410)
.-..|...+. ...+.-.|.+.|++.... ....+..|-+.|.+.+|+++.- +++..++. .|+...
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~g~~----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEELGGY----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHcchh----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1111222211 122333344444443211 1122334555666665554421 12222222 355666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 381 KAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 381 ~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+.-...++...++++|..++-..+
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666666777777776665443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.5e-07 Score=73.51 Aligned_cols=124 Identities=7% Similarity=-0.008 Sum_probs=56.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc-chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH-
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL- 222 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 222 (410)
.+...+..++|+.+..+++.... -+..+|+.-..++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33444555555555555554321 12333333333333444 3455555555555443 33333444333333334432
Q ss_pred -HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 223 -KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 223 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
+++..+++++.+.... +..+|+....++...|+++++++.+.++.+.+
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 3444455455444222 44445444444555555555555555555443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.7e-06 Score=69.95 Aligned_cols=374 Identities=11% Similarity=0.077 Sum_probs=225.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
+-|..+|..||+-+-.+ .++++.+.++++... .+-....|..-+..-.+.++++...++|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 67899999999987666 999999999999875 4556788999999999999999999999998866 4456677766
Q ss_pred HHHHhh-cCchHH----HHHHHHHHH-hCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHhhCCCCC--
Q 015246 108 LNGLCK-NRYTDN----ALRMFRGLQ-KHGFVP-ELVTYNILIKG---------LCKAGRLRTARWILKELGDSGHAP-- 169 (410)
Q Consensus 108 ~~~~~~-~~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~-- 169 (410)
+.--.+ .++... ..+.|+-.. +.|+.+ +...|+..+.. +....+++...++++++.......
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654333 233222 223333333 334332 22344444433 334456777788888876532211
Q ss_pred ----cHHHHHHHHHH-------HHhccchhHHHHHHHHHHHc--CCCCChhh---------------HHHHHHH------
Q 015246 170 ----NAITYTTIMKC-------CFRNRKYKLGLEILSAMKRK--GYTFDGFG---------------YCTVIAA------ 215 (410)
Q Consensus 170 ----~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~l~~~------ 215 (410)
|-..|..-++. --+...+..|.++++++... |......+ |..+|..
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11222211111 12234455666666655432 21110000 1111111
Q ss_pred -------------------------------------------HHHcCC-------HHHHHHHHHHHHHcCCCCChhhHH
Q 015246 216 -------------------------------------------FVKIGR-------LKEATDYMEQMVTDGVQLDIVSYN 245 (410)
Q Consensus 216 -------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 245 (410)
+...|+ .+++..+++...+.-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 223333333332221111111222
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 015246 246 TLINLYCKE---GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRL 321 (410)
Q Consensus 246 ~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 321 (410)
.+...--.. +..+.....++++...-..--.-+|..++..-.+...+..|..+|.++.+.+..+ ...+..+++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 221111011 1244445555555443222223467777888888888999999999999877666 555556666554
Q ss_pred HccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--HhhHHHHHHHHhhcCCHHHH
Q 015246 322 GKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREA 396 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 396 (410)
..++...|.++|+.-... ++..-...+..+...++-..|..+|++.+..+++|+ ...|..++..-..-|+...+
T Consensus 413 -cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 413 -CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 467889999999987766 555566778888899999999999999998866665 47899999988999999999
Q ss_pred HHHHHHHHHc
Q 015246 397 KKIQSKIRMA 406 (410)
Q Consensus 397 ~~~~~~~~~~ 406 (410)
.++-++....
T Consensus 492 ~~lekR~~~a 501 (656)
T KOG1914|consen 492 LKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHh
Confidence 8887776543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-06 Score=72.23 Aligned_cols=214 Identities=11% Similarity=0.032 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG-KPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
+..+-..+...++.++|+.+++++.+.... +..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 344444555667788888888888775322 3445555555566666 5678888888877765 556666776655555
Q ss_pred hcCch--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc---cch
Q 015246 113 KNRYT--DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN---RKY 187 (410)
Q Consensus 113 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 187 (410)
+.|.. ++++.+++++.+...+ |..+|+....++...|+++++++.++++++.++. +...|+....++.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55542 5677777777766433 6777777777777778888888888888776543 455565555444433 222
Q ss_pred ----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 188 ----KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI----GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 188 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
+..++...+++... |-+...|+.+...+... +...+|.+.+.+....+ +.+......++..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34555565665554 55566666666666552 23345666666655432 2244555555555553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-07 Score=87.00 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=185.4
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHHcCCHHHHHHHH
Q 015246 154 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFD---GFGYCTVIAAFVKIGRLKEATDYM 229 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 229 (410)
.|.++-+.++. .+.+...|-..+......++.++|.++.++++.. ++.-. ...|.++++.-...|.-+...++|
T Consensus 1443 saeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 44444444433 2345677888888889999999999999998865 22222 235666666666778888999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 015246 230 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 309 (410)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (410)
+++.+. -.....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+. -|
T Consensus 1521 eRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lP 1595 (1710)
T KOG1070|consen 1521 ERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LP 1595 (1710)
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cc
Confidence 999875 223567888899999999999999999999876 2346778999999999999999999999998875 33
Q ss_pred C---HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH--hhHH
Q 015246 310 N---LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK--SAQK 381 (410)
Q Consensus 310 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 381 (410)
. .......+..-.+.|+.+.++.+|+..... ....|+.+++.-.++|+.+.+..+|++.+..+++|-. ..|.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 3 445556667778899999999999987765 5678999999999999999999999999998888753 4555
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Q 015246 382 AVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 382 ~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
.++..--..|+-..+..+=.++.
T Consensus 1676 kwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHHHH
Confidence 66665566777766665544443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-05 Score=72.46 Aligned_cols=316 Identities=12% Similarity=0.090 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI--PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
|+......+.++...+-..+-+++++++.-.+. .-+...-+.|+-... .-+..+..+..+++..-+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------H
Confidence 455556667777777777777777777764321 111122222332222 334555666666655433 222 2
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
...+...+-+++|..+|++... +....+.|+. ..+..+.|.+.-++.. .+..|+.+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 2334445556666666655432 2333333332 1233444444333321 234455555555555555
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
.+|++-|-+ ..|+..|..++....+.|.+++..+.+.-..+....|... ..++-+|++.++..+..+.+
T Consensus 1121 ~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 555544432 2244555666666666666666666555555443333332 44555566555554443332
Q ss_pred HhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHccCCh
Q 015246 268 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--------------------GFDSNLEAYNCIVDRLGKDGKI 327 (410)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~ 327 (410)
..|+......+..-|...+.++.|.-++..+... ....+..+|..+-.+|...+.+
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 1344444444555555555555544444322110 0011233444444444444333
Q ss_pred HHHHHHHHhhccC----CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-cHhhHHHHHHHHhh
Q 015246 328 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVDGLRH 389 (410)
Q Consensus 328 ~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 389 (410)
.-|. +-.. ...-...++..|-..|-+++-+.+++..+ |+.. ....|..+.-.|.+
T Consensus 1266 rlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1266 RLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh
Confidence 3321 1111 33345566777777777777777777766 3332 33445555554543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-06 Score=82.24 Aligned_cols=201 Identities=11% Similarity=0.031 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC---CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDS-GHA---PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 211 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (410)
...|-..|......++.++|.++.+++... ++. --...|.++++.-.-.|.-+...++|+++.+.. .....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 334444444445555555555555544331 000 012234444444444444444555555544431 12234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcC
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLCKAG 290 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 290 (410)
|...|.+.+..++|.++++.|.+. .......|...+..+.+.++-+.|..++.+..+.-.. -........++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 555555555555555555555544 2234445555555555555555555555555433110 01222233333344455
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+.+.+..+|+..... .+.-...|+.++++-.+.|+.+.++.+|+++...
T Consensus 1615 DaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred CchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 555555555555443 2223445555555555555555555555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-05 Score=72.74 Aligned_cols=114 Identities=14% Similarity=0.190 Sum_probs=52.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG 145 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (410)
+..|..+..+-.+.|...+|.+-|-+ ..|+..|.-.+....+.|.+++-.+.+....+..-.|... ..|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 33455555555555555555544422 2233445555555555555555555555554443333322 244455
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHH
Q 015246 146 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 194 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (410)
|++.++..+..+++. -|+......+..-|...+.++.|.-+|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 555555444433331 134444444444444444444444333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-06 Score=74.98 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=90.9
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
+.+.....+|.+|+.+++.++... .-...|..+...|...|+++.|.++|-+.- .++-.+..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344455667777777777776652 233456666677777777777777775431 244456677777777
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
+.|.++-.+.... ......|..-..-+-.+|++.+|++++-.+.. |+ ..+..|-+.|..+..+++..+.
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 7777666554422 23334444445555566666666665533311 22 2344555666666555555443
Q ss_pred HhCCCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 268 EKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
... .-..|...+..-+...|+...|...|
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 211 11234444444455555555554443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-07 Score=71.84 Aligned_cols=184 Identities=11% Similarity=-0.008 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch--HHHHHH
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI---VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHTIL 282 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 282 (410)
.+..+...+...|++++|...++++...... +. ..+..+..++...|++++|...++++.+....... ..+..+
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 3344444455555555555555555443111 11 23344445555555555555555555543211010 123333
Q ss_pred HHHHHhc--------CChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHH
Q 015246 283 IDGLCKA--------GNIKGARLHLEYMNKIGFDSNL-EAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLC 353 (410)
Q Consensus 283 ~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 353 (410)
..++... |+++.|.+.++.+.+. .|+. ..+..+..... ..... ......+...+.
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~~~ 177 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL----------AGKELYVARFYL 177 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH----------HHHHHHHHHHHH
Confidence 3333322 5677777777777664 2332 22211111100 00000 011234566788
Q ss_pred hcCChhhHHHHHHHHHHcCC--CCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 354 KAKRLPSASKLLLSCLKSGV--RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
..|++.+|+..++++++... +.....+..++.++.+.|++++|..+++.+....+
T Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88999999999999886521 22356788888999999999999999888876654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-07 Score=71.05 Aligned_cols=153 Identities=9% Similarity=0.073 Sum_probs=116.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh
Q 015246 213 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 292 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (410)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567888998887555432221 11 0 1223667788888888887765 45788899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCC--hHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRL-GKDGK--IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
++|...+++..+.. +.+...+..+..++ ...|+ .++|.+++++.... ++.++..+...+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999864 44677888888764 67777 58999999988776 67788889999999999999999999
Q ss_pred HHHHcCCCCcHhhH
Q 015246 367 SCLKSGVRILKSAQ 380 (410)
Q Consensus 367 ~~~~~~~~~~~~~~ 380 (410)
++++.. +|+..-.
T Consensus 169 ~aL~l~-~~~~~r~ 181 (198)
T PRK10370 169 KVLDLN-SPRVNRT 181 (198)
T ss_pred HHHhhC-CCCccHH
Confidence 999875 5555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-06 Score=77.33 Aligned_cols=380 Identities=12% Similarity=-0.002 Sum_probs=213.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 015246 12 FDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQD 91 (410)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 91 (410)
...|+..|-+..+.. +.=...|..|...|....+..+|.+.|+...+.+. .+..........|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555666665555543 12245788888888888888889999988877543 2566778888889999999999888443
Q ss_pred HhcCC-CCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc
Q 015246 92 MICGD-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 170 (410)
Q Consensus 92 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (410)
.-+.. ...-...|....-.|...++...|..-|+...+..+. |...|..+..+|...|.+..|.++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 33221 0111223444555677788888899888888876443 7788888999999999999999999887763 333
Q ss_pred HHHHHH--HHHHHHhccchhHHHHHHHHHHHcC------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-------Hc
Q 015246 171 AITYTT--IMKCCFRNRKYKLGLEILSAMKRKG------YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV-------TD 235 (410)
Q Consensus 171 ~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~ 235 (410)
. +|.. ....-+..|.+.++...+....... ...-..++-.+...+...|=..++..++++.+ ..
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2222 2234456788888888888776441 01111222222222222332223333332222 21
Q ss_pred CCCCChhhHHHHHHHHH-----------------------hcCCH---H---HHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 015246 236 GVQLDIVSYNTLINLYC-----------------------KEGKL---E---AAYLLLDEMEKQGFECDKYTHTILIDGL 286 (410)
Q Consensus 236 ~~~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (410)
....+...|-.+-.++. ..+.. + -+.+.+-.-.. ...+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 11112222222111110 11110 0 01111111111 112233344444333
Q ss_pred Hh----c----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhc
Q 015246 287 CK----A----GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 355 (410)
Q Consensus 287 ~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 355 (410)
.+ . .+...|...+.+.++. ...+..+|+.|.-. ...|.+.-|.-.|-..... ...+|..+...+.++
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 32 1 1223556666666554 23345555555444 5556777776666554433 556677777777888
Q ss_pred CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 356 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
.+++-|...|...+... |.+...|..........|+.-++..+|..
T Consensus 864 ~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 88888888888877553 44555555554455667777777777654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.2e-07 Score=78.28 Aligned_cols=220 Identities=15% Similarity=0.076 Sum_probs=171.4
Q ss_pred CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 168 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
+|-...-..+...+...|-...|..+++++. .+...+.+|...|+..+|..+..+..+ -+|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444444556677778888888888888765 345677888888988899888888777 46788888877
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 327 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (410)
........-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 77776666677888777665432 12222333345789999999999877753 45677899999999999999
Q ss_pred HHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 328 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 328 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+.|.+.|...... +...|+++..+|.+.++-.+|...++++.+.+ ..+...|...+-.....|.+++|.+.+.++.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999987765 77899999999999999999999999999887 5667788888888899999999999998886
Q ss_pred Hcc
Q 015246 405 MAK 407 (410)
Q Consensus 405 ~~~ 407 (410)
..+
T Consensus 615 ~~~ 617 (777)
T KOG1128|consen 615 DLR 617 (777)
T ss_pred Hhh
Confidence 543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-06 Score=79.35 Aligned_cols=236 Identities=8% Similarity=0.030 Sum_probs=146.6
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
+...+..|+..+...+++++|.++.+...+.. +-....|..+...+.+.++.+.+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 45667777777778888888888887666553 33334444444455555554444433 2223
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHH
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 224 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (410)
......++..+..+...+... .-+...+..+..+|-+.|+.+++..+++++.+.. +.+..+.+.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333333443344444444442 2244466777788888888888888888888877 66777888888888877 8888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 225 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
|..++.+.... +...+++..+.++|.++..... .+...+..+.+.....-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhh--------------
Confidence 88887777653 5666678888888888877632 13333333332222111
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 305 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
+..--..++..+...|...++++++..++..+.+. |......++.+|.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 12223345556667777888888888888888766 4555666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.7e-06 Score=63.21 Aligned_cols=250 Identities=14% Similarity=0.064 Sum_probs=150.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
++-+...|++..++..-+...... .+...-..+.++|...|.+....+- +.... .|.......+.......+..
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence 455666777777776665554432 3444455566777777766544332 22222 34444444444444444444
Q ss_pred HHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHH
Q 015246 118 DNALR-MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 118 ~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (410)
++-+. +.+.+.......+......-...|+..|++++|.+.+.... +......=..++.+..+.+.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 33344433333233333344566788888888888876521 333333334566677788888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015246 197 MKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 272 (410)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (410)
|.+-. +..+.+.+..++.+ .+.+.+|.-+|+++.+. .+|++.+.+-...++...|++++|..+++.......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 88643 45566666666654 34677888888888765 667888888888888888888888888888877653
Q ss_pred CCchHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 015246 273 ECDKYTHTILIDGLCKAGNI-KGARLHLEYMNK 304 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 304 (410)
. ++.+...++.+-...|.. +...+.+..+..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3 566665555555555544 334555555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.8e-07 Score=68.21 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=105.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+++..... ++|...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55556666667777666666665443 23345555566777777777777777777776654 55677777777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
|+++.|..-|.+..+. ..-++...+.+...+.-.|+++.|..++...... +..+-..+.......|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777777765 2334556666777777777777777777766544 66666777777777777777777665
Q ss_pred HHH
Q 015246 367 SCL 369 (410)
Q Consensus 367 ~~~ 369 (410)
.-+
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-06 Score=70.85 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
.+...+...|++++|...+....+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344556777777777777777765521 112456667777777777777777777666553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.3e-07 Score=68.98 Aligned_cols=160 Identities=12% Similarity=0.033 Sum_probs=106.8
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 254 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (410)
..+...+...|+-+....+........ +.|.......+....+.|++..|...+.+.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 445556666677666666666544332 445555556677777777777777777777765 455777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 015246 255 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 334 (410)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (410)
|+++.|..-|.+..+.. .-++...+.+.-.+.-.|+++.|..++......+ .-+..+-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777777653 2245566677777777777777777777776643 335556666677777777777777765
Q ss_pred Hhhc
Q 015246 335 ESME 338 (410)
Q Consensus 335 ~~~~ 338 (410)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6e-06 Score=63.78 Aligned_cols=251 Identities=14% Similarity=0.092 Sum_probs=167.6
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
|+-+.-.|.+..++..-...... +.+...--.+.++|...|.+.....- +.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence 34556678888777766655543 24445555567788888776544332 22221 23444444444444444444
Q ss_pred hHHH-HHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 83 DEAN-RVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 83 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+.-. ++.+.+.......+......-...|++.+++++|++.+.... +......=...+.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 444555544434444444455667899999999999988722 334444445667788899999999999
Q ss_pred HhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 015246 162 LGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 237 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (410)
|.+. .+..|.+.|..++.+ .+.+..|.-+|++|-++- +|+..+.+....++...|++++|..+++.......
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9884 356677767766654 456889999999998764 88999999999999999999999999999998754
Q ss_pred CCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 015246 238 QLDIVSYNTLINLYCKEGKL-EAAYLLLDEMEKQ 270 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 270 (410)
. ++.+...++.+-...|.. +...+.+.++...
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4 667766666666666655 4445566666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-06 Score=76.24 Aligned_cols=395 Identities=11% Similarity=-0.020 Sum_probs=248.0
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCChh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI-PPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 83 (410)
.|+...+...|.+.|....+.+ ..+..........|+...+++.|..+.-..-+... ..-...|....-.|...++..
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h 579 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLH 579 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchh
Confidence 3444557788999999998876 56788899999999999999999998433333210 011223344555677889999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV-TYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
.+...|+...... |.|...|..+..+|...|.+..|.++|.+.... .|+.. .-.-..-.-+..|.+.++...+..+
T Consensus 580 ~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 580 GAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999998776 778899999999999999999999999998875 33322 2222334457789999999988877
Q ss_pred hhC------CCCCcHHHHHHHHHHHHhccchhHHHHHHHHH-------HHcCCCCChhhHHHHHHHHHHcCCHH------
Q 015246 163 GDS------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-------KRKGYTFDGFGYCTVIAAFVKIGRLK------ 223 (410)
Q Consensus 163 ~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~------ 223 (410)
... +...-..++-.+...+.-.|-..++..+++.. .......+...|..+..+|.-.-..+
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 542 11112333333333333344434444443332 22221122222222222211100000
Q ss_pred HHHHHH-HHHHHcC--------------------CCCChhhHHHHHHHHHh----cC----CHHHHHHHHHHHHhCCCCC
Q 015246 224 EATDYM-EQMVTDG--------------------VQLDIVSYNTLINLYCK----EG----KLEAAYLLLDEMEKQGFEC 274 (410)
Q Consensus 224 ~a~~~~-~~~~~~~--------------------~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~ 274 (410)
....++ .+....+ ...+..+|..++..|.+ .+ +...|...+...++.. ..
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-an 815 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-AN 815 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hc
Confidence 001111 1111111 11234445555544433 11 2346777777776653 23
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
+..+|+.+.-. ...|++.-+...|-+-... .+....+|..+...+....+++.|...|...+.. +...|......
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali 893 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALI 893 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHh
Confidence 55666666554 6668888888888776654 3456678888888899999999999999988776 44556555555
Q ss_pred HHhcCChhhHHHHHHHHH----HcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 352 LCKAKRLPSASKLLLSCL----KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
.-..|+.-++..+|..-- ..|--|+...|..........|+.++-+...+++-.+
T Consensus 894 ~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 894 PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 667888888888887622 3355667777777777778889988887777766443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=69.40 Aligned_cols=121 Identities=10% Similarity=-0.051 Sum_probs=93.7
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 261 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..++++..+. .|+ .+......+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+.....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666654 333 35567778889999999999999988863 557788888999999999999999999988765
Q ss_pred ---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 341 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 341 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
++..+..+..++...|++++|+..|++.++.. +.+...+.....++
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 77788889999999999999999999998763 44555554444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-07 Score=70.34 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=119.4
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+-.|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3468888998887554432221 11 12223667788888888887764 34788999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHH-hhcCc--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGL-CKNRY--TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
+.|...|++..... +.+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998876 66788888888764 66676 59999999999987544 7888899999999999999999999
Q ss_pred HHHhhCCCCCcHHHHH
Q 015246 160 KELGDSGHAPNAITYT 175 (410)
Q Consensus 160 ~~~~~~~~~~~~~~~~ 175 (410)
+++.+... |+..-+.
T Consensus 168 ~~aL~l~~-~~~~r~~ 182 (198)
T PRK10370 168 QKVLDLNS-PRVNRTQ 182 (198)
T ss_pred HHHHhhCC-CCccHHH
Confidence 99988643 4444343
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-07 Score=65.57 Aligned_cols=108 Identities=14% Similarity=-0.016 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
.++++..+. ++..+......+...|++++|...|+...... +.+...+..+..++...|++++|...|++..+..
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555553 23334556667777778888888877777664 3366677777777777888888888888777753
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+.+...+..+..++...|++++|...|+.....
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446677777777777778888888777776654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-05 Score=74.62 Aligned_cols=238 Identities=9% Similarity=0.032 Sum_probs=166.3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
.+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+...++.+.+.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 45668899999999999999999999977764 343 34444444466666665554443 33
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
+.......++.-+..+...+... .-+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.+.+...+... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 44444445554444445555553 2355688889999999999999999999999876 45788899999999888 99
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
++|.+++.+.... +...+++..+..+|.++....+. +...+. .+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHH
Confidence 9999998887754 66677899999999999886222 332322 233333
Q ss_pred HhC-CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 268 EKQ-GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 268 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
... +..--..++..+...|...++++++..+++.+.+.. +.|......++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222 112233456667777888899999999999999874 345566666777665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-06 Score=77.19 Aligned_cols=143 Identities=11% Similarity=0.055 Sum_probs=99.4
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 316 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 316 (410)
.+.+...+..|.....+.|.+++|..+++.+.+.. +-+......++..+.+.+++++|....++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 44457777777777778888888888888777763 2234556666777777888888888888777753 344566666
Q ss_pred HHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 382 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (410)
+..++...|++++|..+|+++... +..++..+..++...|+.++|...|+++++.. .|....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 777777788888888888877754 45677777777777888888888888777652 444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-05 Score=60.14 Aligned_cols=186 Identities=18% Similarity=0.169 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHH
Q 015246 116 YTDNALRMFRGLQK---HG-FVPELV-TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 116 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (410)
+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...- +.+...-..-...+...|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44455555554432 12 333333 23445556666777777777777766542 22222222222334456777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
+++++.+.+.+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777777775 556666666666666677777777777777765 5567788888888888888888888888887755
Q ss_pred CCCCchHHHHHHHHHHHhcC---ChhHHHHHHHHHHhc
Q 015246 271 GFECDKYTHTILIDGLCKAG---NIKGARLHLEYMNKI 305 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 305 (410)
. +.++..+..+...+.-.| +.+.+.++|.+..+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 334555555555544333 456677777777764
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-08 Score=52.65 Aligned_cols=32 Identities=47% Similarity=0.795 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 26 GISPDVVTYNSLIAGATRNSLLSCSLDLLDEM 57 (410)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 57 (410)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-06 Score=75.76 Aligned_cols=147 Identities=13% Similarity=0.028 Sum_probs=111.1
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHH
Q 015246 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI 141 (410)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (410)
.+.+...+..|.......|.+++|..+++.+.+.. +.+......+...+.+.+.+++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 44567778888888888888888888888888765 555677777888888888888888888888876433 6667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 212 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (410)
+..++.+.|++++|..+|+++... .+-+..++..+..++...|+.++|...|+...+.. .+....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 778888888888888888888873 23357777888888888888888888888887764 3444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-08 Score=51.89 Aligned_cols=32 Identities=50% Similarity=0.879 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 131 GFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
|+.||..+|++++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5e-05 Score=64.12 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=75.5
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc-HHHHHHHHHHHHhccch
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKY 187 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 187 (410)
..+...|++++|+..++.+... .+-|+.........+.+.++.++|.+.++++... .|+ ......+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3444556666666666665554 2334444445555566666666666666666553 233 34444455566666666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
.+|+.+++...... +.|+..|..+..+|...|+..++..... ..+...|+++.|...+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHH
Confidence 66666666555543 5555566666666666665555543322 2234455555565555555
Q ss_pred HhC
Q 015246 268 EKQ 270 (410)
Q Consensus 268 ~~~ 270 (410)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-05 Score=59.38 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR 115 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (410)
.++-+....|+.+.|...++.+... +|-+..+-..-.-.+-..|++++|.++++.+++.+ |.|..++..-+...-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3333444445555555555554443 22222222211222233445555555555555444 334444443333444444
Q ss_pred chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015246 116 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
..-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 444444444444443 333445555555555555555555555554443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-05 Score=65.55 Aligned_cols=148 Identities=13% Similarity=0.056 Sum_probs=112.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHhcCCh
Q 015246 214 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNI 292 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 292 (410)
..+...|++++|+..++.+... .+.|+..+......+...++..+|.+.++.+... .|+ ......+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3455678888899988888876 3445666666777888899999999999988877 444 55566677888889999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
.+|..+++..... .+.|+..|..|..+|...|+..++.... ...+...|+++.|...+....+..
T Consensus 391 ~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 391 QEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999888888776 4667888999999999998888776644 456777889999998888887653
Q ss_pred CCCcHhhH
Q 015246 373 VRILKSAQ 380 (410)
Q Consensus 373 ~~~~~~~~ 380 (410)
.++..+|
T Consensus 456 -~~~~~~~ 462 (484)
T COG4783 456 -KLGFPDW 462 (484)
T ss_pred -cCCcHHH
Confidence 4444444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.6e-07 Score=64.65 Aligned_cols=113 Identities=13% Similarity=0.005 Sum_probs=79.6
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
.++++..... .+......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++.....
T Consensus 5 ~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555555431 134455666677778888888888888887753 446677777888888888888888888877554
Q ss_pred -CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhh
Q 015246 341 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 379 (410)
Q Consensus 341 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 379 (410)
++..+..+..++...|++++|...+++.++. .|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 5566777778888888888888888888765 344443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-06 Score=61.11 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
.....+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++.....+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344445555555666666666666655543 2244555555555656666666666666555443 44455555555555
Q ss_pred hhcCchHHHHHHHHHHHhC
Q 015246 112 CKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~ 130 (410)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5666666666666555553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00059 Score=62.18 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=124.0
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSLIA--GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
...+++..|++..+.+.++. |+... ...+. .+.+.|+.++|..+++.....+.. |..|...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45678888888888888763 55432 22333 345788889999888887765444 77888888889999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHH
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR----------LRT 154 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~ 154 (410)
|..+|++..+. -|+......+..+|++.+++.+-.+.=-++.+. .+-++..+=.++........ ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998866 466777777777888877766544433333332 23344444344443332211 123
Q ss_pred HHHHHHHHhhCC-CCCcHHHHHHHHHHHHhccchhHHHHHHHH-HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 015246 155 ARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSA-MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 232 (410)
Q Consensus 155 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 232 (410)
|.+.++.+.+.+ .--+..-...........|++++|.+++.. ..+.-.+.+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344444444332 111111222223334455666666666632 222221222222233344444455555555544444
Q ss_pred HHc
Q 015246 233 VTD 235 (410)
Q Consensus 233 ~~~ 235 (410)
...
T Consensus 253 l~k 255 (932)
T KOG2053|consen 253 LEK 255 (932)
T ss_pred HHh
Confidence 443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-05 Score=58.85 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=10.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 015246 284 DGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..+...|++++|...|+.+...
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3444445555555555554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=68.17 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=57.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015246 71 SLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 150 (410)
Q Consensus 71 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (410)
.|+..+...++++.|.++|+++.+.. |+ ....+++.+...++..+|.+++.+..+. .+.+...+..-.+.+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555554432 22 2223444444445555555555555543 1223444444444555555
Q ss_pred CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 151 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
+++.|+.+.+++.... +-+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555432 1233355555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-05 Score=66.60 Aligned_cols=124 Identities=16% Similarity=0.096 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 015246 209 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 288 (410)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (410)
...++..+...++++.|..+++++.+.. | .....++..+...++..+|.+++++..+.. +.+...+..-...+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555566677777777777777652 2 334446666666677777777777776553 2345555555666777
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 289 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
.++++.|..+.+++.+. .+.+..+|..|..+|...|+++.|+..++.++
T Consensus 247 k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777764 23345577777777777777777777777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-06 Score=58.44 Aligned_cols=90 Identities=10% Similarity=-0.110 Sum_probs=47.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 015246 314 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 390 (410)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (410)
...+...+...|++++|.++|+.+... +...|..|..++...|++.+|+..|..+...+ +.|+..+..+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 334444445555555555555544333 44445555555555555555555555555443 33455555555555555
Q ss_pred CCHHHHHHHHHHHH
Q 015246 391 GCRREAKKIQSKIR 404 (410)
Q Consensus 391 g~~~~a~~~~~~~~ 404 (410)
|+.+.|++.|+...
T Consensus 117 G~~~~A~~aF~~Ai 130 (157)
T PRK15363 117 DNVCYAIKALKAVV 130 (157)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.7e-05 Score=56.35 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 015246 249 NLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 326 (410)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (410)
..+...|++++|...|+.+......|+ ......+...+...|++++|+..++..... ...+..+......+.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 334444444444444444444321111 112222334444444444444444332221 1222333444444455555
Q ss_pred hHHHHHHHH
Q 015246 327 IDHAINVFE 335 (410)
Q Consensus 327 ~~~A~~~~~ 335 (410)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555554444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-05 Score=56.35 Aligned_cols=94 Identities=16% Similarity=-0.004 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHhhccC------CchhHHHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMV 349 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~ 349 (410)
++...+..+...|++++|...++.+.+.... .....+..+..++.+.|+++.|...++.+... ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555666667777777777777777654211 11334555666777777777777777766543 133456666
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 015246 350 HNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.++...|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-05 Score=53.67 Aligned_cols=93 Identities=15% Similarity=-0.001 Sum_probs=56.5
Q ss_pred HHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 315 NCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
..+...+...|++++|...+++.... +...+..+..++...|++++|.+.+++..... +.+...+..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444555556666666666655443 22445556666666677777777777766543 334456666666777777
Q ss_pred CHHHHHHHHHHHHHccC
Q 015246 392 CRREAKKIQSKIRMAKI 408 (410)
Q Consensus 392 ~~~~a~~~~~~~~~~~~ 408 (410)
++++|...+++..+..+
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777776665543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0037 Score=57.32 Aligned_cols=193 Identities=12% Similarity=0.038 Sum_probs=126.1
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
.+.|.|+.++|..+++.....+. .|..+...+-..|...++.++|..+|++.... .|+......+..+|++.+++.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999998887763 48889999999999999999999999999875 4677778888888888887765
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcC----------chHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNR----------YTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLR 153 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 153 (410)
-.+.--++-+. .+.+...+=++++...... -..-|.+..+.+.+.+ ...+..-.......+...|+++
T Consensus 129 qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 129 QQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 44333333221 1333333333444333211 1233556666666543 2222233333344556778889
Q ss_pred HHHHHHH-HHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC
Q 015246 154 TARWILK-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 201 (410)
Q Consensus 154 ~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (410)
+|.+++. ...+.-...+...-+.-+..+...++|.+..++..++...+
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 9988883 33333333344444556667777788888888888887775
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.6e-06 Score=50.72 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
+...+...|++++|+..|+++++.. +-+...+..++.++...|++++|...|+++.+..|+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4667888999999999999999774 5578888889999999999999999999999888875
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00057 Score=54.70 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=100.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-
Q 015246 213 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY---NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK- 288 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 288 (410)
...+...|++++|.+.|+.+....+. +.... -.++.++.+.+++++|...+++..+..+.....-+.....+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445567777777777777664222 12221 33445666777777777777777655322222222222222221
Q ss_pred -c---------------CC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHH
Q 015246 289 -A---------------GN---IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMV 349 (410)
Q Consensus 289 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 349 (410)
. .+ ...|...|+.+++. -|+. .-..+|...+..+...-...-..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 22444555555553 2332 2234444444444433222223556
Q ss_pred HHHHhcCChhhHHHHHHHHHHc--CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 350 HNLCKAKRLPSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
..|.+.|.+..|+.-++.+++. +.+.....+..+..+|...|..++|.+....+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 7788899999999999999875 2233456777888899999999999988876654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00091 Score=49.17 Aligned_cols=154 Identities=14% Similarity=0.063 Sum_probs=88.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChh
Q 015246 214 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 293 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (410)
.+..+.=|++...+-..+-.+ ..|+...-..+..+..+.|+..+|...|++...--...|......+.++....+++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 333444444444333332222 345666666677777777777777777777765545556666777777777777777
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 294 GARLHLEYMNKIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 294 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
.|...++++.+.+.. -++.....+...+...|++..|...|+....- ++..-......+.++|+.+++..-+....
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777777776654210 01223444556666677777777777666554 33333334445566666665554444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.3e-05 Score=64.73 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 132 FVPELVTYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555556666666666666666666665543 11112233446666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
+.++..+.+.|++..|.++...|...+...+..++...+.+|
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 666666666666666666666665554444444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-05 Score=66.45 Aligned_cols=100 Identities=12% Similarity=-0.100 Sum_probs=81.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCC
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR 357 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 357 (410)
.-...+...|+++.|+..|+++++.. +.+...+..+..+|...|++++|+..++++... +...|..++.++...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34566778899999999999999863 446778888889999999999999999988766 56688888999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 358 LPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
+++|+..|+++++. .|+......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999999976 4443333333
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.8e-06 Score=44.28 Aligned_cols=33 Identities=48% Similarity=0.791 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD 65 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 65 (410)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-05 Score=50.57 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=58.5
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC-CHHHHHHHHHHHHHccC
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG-CRREAKKIQSKIRMAKI 408 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 408 (410)
++..|..++..+...|++++|+..|+++++.+ +.+...+..++.++...| ++++|.+.+++..+.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35678888999999999999999999999875 557888999999999999 79999999999988765
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=51.44 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcC--------ChhHHHHHHHHHhcCCCCCChhHHH
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGI-PPDVWSYNSLMHCLFQLG--------KPDEANRVFQDMICGDLTPCTATFN 105 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (410)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666667888888888888888887 788888888887776542 1234555666666666666666666
Q ss_pred HHHHHHhh
Q 015246 106 IMLNGLCK 113 (410)
Q Consensus 106 ~l~~~~~~ 113 (410)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=4e-06 Score=44.18 Aligned_cols=31 Identities=32% Similarity=0.824 Sum_probs=12.4
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCC
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVP 134 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (410)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3334444444444444444444444333333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.5e-06 Score=43.60 Aligned_cols=32 Identities=38% Similarity=0.649 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPP 64 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 64 (410)
+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.15 E-value=6e-05 Score=64.38 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=77.4
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHH
Q 015246 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG--DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY 139 (410)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (410)
.+.+......+++.+....+.+.+..++-+.... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3345555556666666666666677666666544 11222344456777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 184 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (410)
+.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777776666555555555555555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.9e-05 Score=61.53 Aligned_cols=128 Identities=18% Similarity=0.103 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 320 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (410)
.+|..++...-+.+..+.|..+|.++.+.+ ..+...|......-.. .++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888999999999998543 3345556655555333 56777799999998876 66778888888888
Q ss_pred HHccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 321 LGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+.+.|+.+.|+.+|++.... ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999988776 2347888888888889999999998888865
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=51.15 Aligned_cols=96 Identities=9% Similarity=-0.013 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCC--CCChhHHHHHHHH
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIP--PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDL--TPCTATFNIMLNG 110 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 110 (410)
..+...+...|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|.+.|+.+..... +.....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444555555555555555443211 0122334444555555555555555555443310 0112334444444
Q ss_pred HhhcCchHHHHHHHHHHHhC
Q 015246 111 LCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~ 130 (410)
+...|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00019 Score=58.94 Aligned_cols=130 Identities=11% Similarity=0.048 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH-HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG-LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
+|..+++...+.+..+.|.++|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555555332 2223333333333 11234444455555555543 333455555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCc---HHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 147 CKAGRLRTARWILKELGDSGHAPN---AITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
...++.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543 2111 124555555555555555555555555443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.5e-05 Score=49.89 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=8.0
Q ss_pred HHHHHhhcCchHHHHHHHHHH
Q 015246 107 MLNGLCKNRYTDNALRMFRGL 127 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~ 127 (410)
+..++...+++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.6e-06 Score=42.95 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
|+.++.+|++.|+++.|.++|+.|.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333333333333333333333333333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0022 Score=51.41 Aligned_cols=58 Identities=10% Similarity=-0.101 Sum_probs=31.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHH---HHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 72 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATF---NIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
....+...|++++|.+.|+.+.... +-+.... -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455666666666666666543 1112221 23455666666666666666666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00048 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
+..+...+.+.|++++|.++|+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444445555555555555555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=52.37 Aligned_cols=20 Identities=30% Similarity=0.762 Sum_probs=8.3
Q ss_pred HHHHHHhccchhHHHHHHHH
Q 015246 177 IMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~ 196 (410)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.9e-05 Score=50.64 Aligned_cols=76 Identities=18% Similarity=0.388 Sum_probs=66.5
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHHcCCCCChHhHHHHH
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGI-SPDVVTYNSLIAGATRNS--------LLSCSLDLLDEMLEMGIPPDVWSYNSLM 73 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 73 (410)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 5567778999999999999999998 899999999999887643 3456789999999999999999999999
Q ss_pred HHHHh
Q 015246 74 HCLFQ 78 (410)
Q Consensus 74 ~~~~~ 78 (410)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 88764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-05 Score=51.55 Aligned_cols=12 Identities=17% Similarity=-0.056 Sum_probs=4.5
Q ss_pred hhHHHHHHHHHH
Q 015246 292 IKGARLHLEYMN 303 (410)
Q Consensus 292 ~~~a~~~~~~~~ 303 (410)
++.|+.+++++.
T Consensus 5 y~~Ai~~~~k~~ 16 (84)
T PF12895_consen 5 YENAIKYYEKLL 16 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0048 Score=51.49 Aligned_cols=156 Identities=13% Similarity=-0.020 Sum_probs=80.0
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh-------------HHH
Q 015246 180 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS-------------YNT 246 (410)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ 246 (410)
++...+++++|.+.--..++.. ..+......-..++...++.+.+...|++.+..+ |+... +..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 4445566666665555555443 2222222222223334455566666666555432 21110 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 015246 247 LINLYCKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLG 322 (410)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 322 (410)
=..-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+...+. .|. ...+..-..++.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHH
Confidence 112234567777777777776643 23444555666666666777777777777666653 222 222333334555
Q ss_pred ccCChHHHHHHHHhhccC
Q 015246 323 KDGKIDHAINVFESMEVK 340 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~ 340 (410)
..++|++|.+-++...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566777777777665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00032 Score=50.60 Aligned_cols=98 Identities=9% Similarity=0.025 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 215 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (410)
......+...+...|++++|..+|+.+....+ -+...|..|..++...|++++|+..|......+ +.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 33444555566667777777777777666432 245556666667777777777777777777665 5566666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 015246 216 FVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~ 235 (410)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-05 Score=61.07 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=80.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhH
Q 015246 285 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSA 361 (410)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A 361 (410)
-..+.+++++|+..|.+.++.. +-|...|.--..+|.+.|.++.|++-.+.....|+ .+|..|..+|...|++.+|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4667899999999999999962 44566677778899999999999999998887754 5788889999999999999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 362 SKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
++.|++.++ +.|+..+|..=+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999995 46776666554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0003 Score=58.12 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 209 YCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
|......|...+++++|...|.+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 4444555555566666666655543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00019 Score=61.26 Aligned_cols=88 Identities=7% Similarity=0.001 Sum_probs=49.5
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+...|++++|++.|+++.+.+ +.+...|..+..++...|++++|+..++...+... .+...|..+..++...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 445566666666666666554 33445555555566666666666666666655422 2444555555556666666666
Q ss_pred HHHHHHHhcC
Q 015246 86 NRVFQDMICG 95 (410)
Q Consensus 86 ~~~~~~~~~~ 95 (410)
...|++.+..
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 6666665544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00048 Score=52.23 Aligned_cols=85 Identities=15% Similarity=-0.014 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444445555555555555555544321111 2345555555555666666666665555531 22334444444555
Q ss_pred HccCChHH
Q 015246 322 GKDGKIDH 329 (410)
Q Consensus 322 ~~~g~~~~ 329 (410)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55554433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00048 Score=52.21 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD--VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
..+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..... +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3566667777778888888888888776432222 3567777778888888888888888877654 344556666666
Q ss_pred HHhhcCchHHH
Q 015246 110 GLCKNRYTDNA 120 (410)
Q Consensus 110 ~~~~~~~~~~a 120 (410)
++...|+...+
T Consensus 115 ~~~~~g~~~~a 125 (172)
T PRK02603 115 IYHKRGEKAEE 125 (172)
T ss_pred HHHHcCChHhH
Confidence 66666664433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00033 Score=52.93 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhHHHHH
Q 015246 12 FDAGYTILNRMR-EAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPP--DVWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 12 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
+..+.+.+..+. ..+.......|..+...+...|++++|...|+........+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445555553 22212224455666666667777777777777776542221 123566666777777777777777
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHh
Q 015246 89 FQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
++...... +.....+..+...+.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 77766543 333444555555554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.014 Score=52.37 Aligned_cols=325 Identities=13% Similarity=0.052 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHH----------HHHHhcCChhHHHHHHHHHhcCCC
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLM----------HCLFQLGKPDEANRVFQDMICGDL 97 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~~ 97 (410)
.|.+..|..+.......-.++.|...|-+.... +.......|- ..-.--|++++|.++|-++..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 588889988888877777778787777655432 1221111111 12223578888888887776543
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHH
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 176 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (410)
..+..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. ...
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence 2355666777777776666532111 0001234677777777777777777777765432 123
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 256 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (410)
.+.++.+..++++.+.+...+ +.+....-.+..++.+.|.-++|.+.+-+-. . | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHH
Confidence 455555555555544444332 3344444555666666666666655443221 1 1 223445555555
Q ss_pred HHHHHHHHHHHHhCCC-----------CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCH----HHHHHH
Q 015246 257 LEAAYLLLDEMEKQGF-----------ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSNL----EAYNCI 317 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~----~~~~~l 317 (410)
|.+|.++-++..-..+ -.+. -....|..+.+.|+.-+|-+++.+|.+. +.+|-. .+...+
T Consensus 894 W~~avelaq~~~l~qv~tliak~aaqll~~~-~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al 972 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLPQVQTLIAKQAAQLLADA-NHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL 972 (1189)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhc-chHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH
Confidence 6555555443211000 0000 1122344556666666666666555432 222211 011111
Q ss_pred -HHH----------HHccCChHHHHHHHHhhccC-------------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc-C
Q 015246 318 -VDR----------LGKDGKIDHAINVFESMEVK-------------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-G 372 (410)
Q Consensus 318 -~~~----------~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~ 372 (410)
+.- -.+.|..++|..+++..... ....|..+.+--...|..+.|++.--.+.+. +
T Consensus 973 LvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd 1052 (1189)
T KOG2041|consen 973 LVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYED 1052 (1189)
T ss_pred HHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhh
Confidence 110 11345555665555433221 2334445555556678888887765555432 3
Q ss_pred CCCcHhhHHHHHHHHh
Q 015246 373 VRILKSAQKAVVDGLR 388 (410)
Q Consensus 373 ~~~~~~~~~~l~~~~~ 388 (410)
+-|....|..+.-+-+
T Consensus 1053 ~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1053 FLPPAEIYSLLALAAC 1068 (1189)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4455566655544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00098 Score=46.32 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=23.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
++-..|+.++|..+|++....|+... ...+..+..++...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444443222 12333344444444455555444444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0018 Score=53.90 Aligned_cols=260 Identities=13% Similarity=0.004 Sum_probs=146.9
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc
Q 015246 105 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 184 (410)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (410)
......+.+...+..|+..+....+..+. +...|..-+..+...|+++++.--.+.-.+... -........-+++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-Cccccccchhhhhhhh
Confidence 34456777888888999999888887443 566677777777788888887766655544321 1233455556666667
Q ss_pred cchhHHHHHHHHHHHc---C-------------CCCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 185 RKYKLGLEILSAMKRK---G-------------YTFDGFGYCTV-IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 185 ~~~~~a~~~~~~~~~~---~-------------~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
++..+|.+.++.-... + -+|.-.++..+ ..++.-.|+.++|...--.+.+.. ....+...
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHH
Confidence 7777777666532200 0 01111222211 234455667777766666665542 11222233
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHhCCCCCchHHH---HHHHHHH----------HhcCChhHHHHHHHHHHhc---CCCC
Q 015246 248 IN--LYCKEGKLEAAYLLLDEMEKQGFECDKYTH---TILIDGL----------CKAGNIKGARLHLEYMNKI---GFDS 309 (410)
Q Consensus 248 ~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~----------~~~~~~~~a~~~~~~~~~~---~~~~ 309 (410)
++ ++...++.+.+...|++.+..+ |+...- ......+ .+.|++..|.+.+.+.+.. +..|
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 33 3445566777777777766552 332221 1122222 3456777777777776653 2334
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHH---HHHHHHhcCChhhHHHHHHHHHHc
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS---MVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+...|.....+..+.|+.++|+.--+.....|+..... -..++...+++++|.+-++++.+.
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555566667777777777766666664443222 234455567777777777776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.2e-05 Score=48.94 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=30.5
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
..|++++|++.|+++.... |.+...+..++.+|.+.|++++|.++++++....++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4555666666666665542 335555555566666666666666666655555443
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00074 Score=53.95 Aligned_cols=114 Identities=14% Similarity=0.033 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC---ChHHHHHH
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINV 333 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 333 (410)
.+....-++.-...+ +-|...|..|...|...|++..|...|....+. -++++..+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444455445444 447888888999999999999999999888876 3566777777777665443 35678888
Q ss_pred HHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 334 FESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 334 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
|+++... ++.+...|...+...|++.+|...|+.|++..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888766 66677778888888899999999999888763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=59.24 Aligned_cols=64 Identities=9% Similarity=-0.067 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
..|..+.......|++++|...++++++. .|+...|..++..+...|+.++|...+++..+.+|
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34444444444445555555555555543 23444455555555555555555555555544444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0026 Score=49.59 Aligned_cols=73 Identities=8% Similarity=0.017 Sum_probs=43.8
Q ss_pred cCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---HhhHHHHHHHHhhcCCHHHHH
Q 015246 324 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL---KSAQKAVVDGLRHSGCRREAK 397 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~ 397 (410)
..-..+|...+..+...-...-..++..|.+.|.+..|..-++.+++. .+.+ ...+..++.+|.+.|..+.|.
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 334445555444444432222334567788888888898888888876 2222 345667778888888877544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00073 Score=51.02 Aligned_cols=62 Identities=13% Similarity=-0.117 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555666665555554432111 123455555555566666666666655554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.014 Score=50.60 Aligned_cols=358 Identities=11% Similarity=0.051 Sum_probs=208.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCChh----
Q 015246 9 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ-LGKPD---- 83 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~---- 83 (410)
...++++.+.++++...- +-+...|..-|..-...++++....+|.+-...- .+...|...++.-.+ .|+..
T Consensus 32 t~~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~ 108 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLSYVRETKGKLFGYRE 108 (656)
T ss_pred cCCHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHHHHHHHccCcchHHH
Confidence 338999999999998652 5567789999999999999999999999887643 245555555543322 22222
Q ss_pred HHHHHHHHHhcC-CCCC-ChhHHHHHHHH---------HhhcCchHHHHHHHHHHHhCCCCCCHHHHH------HHHHH-
Q 015246 84 EANRVFQDMICG-DLTP-CTATFNIMLNG---------LCKNRYTDNALRMFRGLQKHGFVPELVTYN------ILIKG- 145 (410)
Q Consensus 84 ~a~~~~~~~~~~-~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~l~~~- 145 (410)
...+.|+-.... |+.+ +...|+..+.. +..+.+++...+++.++....+.-=...|+ .=++.
T Consensus 109 ~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ 188 (656)
T KOG1914|consen 109 KMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINII 188 (656)
T ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence 223333333322 3222 22344444432 334556777777777666532110011111 00000
Q ss_pred ----H--HhcCCHHHHHHHHHHHhh--CC---------------------------------------------------
Q 015246 146 ----L--CKAGRLRTARWILKELGD--SG--------------------------------------------------- 166 (410)
Q Consensus 146 ----~--~~~~~~~~a~~~~~~~~~--~~--------------------------------------------------- 166 (410)
+ -+...+-.|.++++++.. .|
T Consensus 189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay 268 (656)
T KOG1914|consen 189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY 268 (656)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence 0 112223333333333211 01
Q ss_pred --------CCCcHHHH-HHHH----HHHHhccc-------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC---CHH
Q 015246 167 --------HAPNAITY-TTIM----KCCFRNRK-------YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLK 223 (410)
Q Consensus 167 --------~~~~~~~~-~~l~----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~ 223 (410)
..|+.... ...+ ..+...|+ -+++.++++.....-...+...|..+...-...- ..+
T Consensus 269 eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~ 348 (656)
T KOG1914|consen 269 EQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEK 348 (656)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhh
Confidence 01111000 0000 01111122 2344444544443322223333333322211111 355
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 224 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
.....++++.......-.-+|..++..-.+..-...|..+|.++.+.+..+ +.....+++.-++ .++.+-|.++|+--
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLG 427 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELG 427 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHH
Confidence 666677776654333234567788888888888999999999999887666 5666777776554 67889999999986
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 303 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+. ...++.-....+.-+...++-..+..+|++.... ....|..++.--..-|+...+.++-+++...
T Consensus 428 Lkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 428 LKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 664 3445556677788888999999999999998776 3478999999999999999999988887643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00042 Score=55.05 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=57.7
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHH
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 119 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (410)
-+.+.+++++|+..|.+.++.. |-|...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3445666666666666666642 2245555556666666666666666666665544 3345566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH
Q 015246 120 ALRMFRGLQKHGFVPELVTYNI 141 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~ 141 (410)
|.+.|++.... .|+-.+|-.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHH
Confidence 66666666653 444444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0061 Score=45.02 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=98.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTI 281 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 281 (410)
.|+...-..+..+....|+..+|...|++...--...|......+.++....+++..|...++++.+.+. .-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5566666677788888888888888888887654556777777788888888888888888888876531 112345566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
+.+.+...|.+.+|...|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 778888888888898888888874 5676666667777888888777765544443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0064 Score=47.45 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIP--PDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
.....+...|++.+|.+.|+.+...... -.......++.++.+.|+++.|...+++.++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556677777777777777765211 12344555666777777777777777776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0031 Score=56.48 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
...+..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444555555555555555553 3445555555555555666666555555554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0004 Score=56.02 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC------CchhHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSS 347 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ 347 (410)
.|...+....+.|++++|...|+.+.+. .|+ +..+..+..+|...|++++|...|+.+... .+..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445556777777777776664 232 245556666666677777777666666533 2334444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++.++...|+.++|...|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555566666667777766666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0024 Score=51.15 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=57.5
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc---CchHHHHHHHHHHHhCCCCCCHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN---RYTDNALRMFRGLQKHGFVPELVTYNI 141 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (410)
|...|..|...|...|+++.|...|.+..+.. +++...+..+..++... .+..++..+|+++.+... .|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 55666666666666666666666666665554 45555555555444432 234556666666665532 25555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 142 LIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 566666666666666666666654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=45.77 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=32.6
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 60 (410)
.+.|++++|+++|+.+.... +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566666666666666554 335556666666666666666666666666654
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=4e-05 Score=38.90 Aligned_cols=29 Identities=45% Similarity=0.670 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMG 61 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 61 (410)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.2e-05 Score=38.82 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=9.5
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (410)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=46.06 Aligned_cols=58 Identities=12% Similarity=-0.092 Sum_probs=31.8
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+.+.+++++|.+++++++..+ |.+...+...+.++.+.|++++|.+.++++.+.+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4455555555555555555543 334455555555555555555555555555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0029 Score=44.01 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=21.7
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 015246 41 ATRNSLLSCSLDLLDEMLEMGIPPD--VWSYNSLMHCLFQLGKPDEANRVFQDMI 93 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 93 (410)
+-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444433221 1223333344444444444444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.001 Score=48.27 Aligned_cols=84 Identities=7% Similarity=-0.006 Sum_probs=56.9
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhcc---CCchhHHHHHHHHHhcCChhhHH
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---KDSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
+...|++++|..+|+-+.-.+ +.+..-|..|..++-..+++++|...|..... .|+..+.....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 456777777777777766543 33455566667777777777777777764432 26666667777777777777777
Q ss_pred HHHHHHHH
Q 015246 363 KLLLSCLK 370 (410)
Q Consensus 363 ~~~~~~~~ 370 (410)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77777765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00029 Score=43.32 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=34.9
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 60 (410)
..+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566666666666666666654 335556666666666666666666666666553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0025 Score=48.46 Aligned_cols=105 Identities=18% Similarity=0.283 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 015246 28 SPDVVTYNSLIAGATRN-----SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA 102 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (410)
..+..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++++=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 45666777777666543 4555566666667777777777777777766543 2221 011111110
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
.- --.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00 123446688889999999988999999998888877765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.032 Score=49.68 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchh-----------
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT----------- 344 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------- 344 (410)
..+...+..-+.+...+.-|-++|..|-.. ..+++.....++|++|..+-++.++--+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 344555555555566667777777666432 245667777788888888777766652222
Q ss_pred --HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 345 --YSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 345 --~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+...-.+|.+.|+..+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 222334666777777888887777543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.031 Score=46.59 Aligned_cols=290 Identities=13% Similarity=0.067 Sum_probs=175.3
Q ss_pred HHHHHHHHh--hcCchHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhhCCCCCcHHH--HHHH
Q 015246 104 FNIMLNGLC--KNRYTDNALRMFRGLQKHGFVPELVTYNILI--KGLCKAGRLRTARWILKELGDSGHAPNAIT--YTTI 177 (410)
Q Consensus 104 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 177 (410)
|..|-.++. -.|+-..|.++-.+..+. +..|....-.++ ++-.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444333 356777777766665432 222333333333 3344578888888888888762 22221 1222
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCChhh--HHHHHHHH---
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVS--YNTLINLY--- 251 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~--- 251 (410)
.-...+.|+.+.|...-+..-..- +.-.......+...+..|+++.|+++++.-.... +.++..- -..|+.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 223356788888888877776653 4445667778888888899999998888766542 2233221 11222211
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 330 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 330 (410)
.-..+...|...-.+..+. .||.. .-....+++.+.|+..++-.+++.+-+....|+ ++. +..+.+.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCcHHH
Confidence 1123455566555555443 44433 223345678888899999899988888644444 332 2334555553322
Q ss_pred ----HHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh-hcCCHHHHHHHHHHHHH
Q 015246 331 ----INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR-HSGCRREAKKIQSKIRM 405 (410)
Q Consensus 331 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 405 (410)
.+-++.|...+..+...+..+-...|++..|..--+.... ..|....|..+...-. ..||-.++..++.+..+
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1234455555777777788888888888888877777764 3677778877777654 44888888888877655
Q ss_pred c
Q 015246 406 A 406 (410)
Q Consensus 406 ~ 406 (410)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.033 Score=46.56 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+-.. + -++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence 33444444555565555555544442 34555566666666666666555443221 1 12244555566666
Q ss_pred ccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 323 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
+.|...+|..+...+. +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666665555421 23444555666666666555444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00065 Score=42.33 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMV 233 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 233 (410)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++...| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443 233334444444444444 3444444444443
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=50.42 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=72.8
Q ss_pred CChHhHHHHHHHHHh-----cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHH
Q 015246 64 PDVWSYNSLMHCLFQ-----LGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT 138 (410)
Q Consensus 64 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (410)
.+..+|..+++.+.+ .|..+-....+..|.+-|+..|..+|+.|+..+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 466777777777764 35666667777778888888888888888877654 2211 111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 139 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
+..+.. .--.+-+-|++++++|...|+-||..++..++..+.+.+.+
T Consensus 108 fQ~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 108 FQAEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 111111 11234567899999999999999999999999999877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=54.16 Aligned_cols=263 Identities=14% Similarity=0.076 Sum_probs=151.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHH--HHc--C-CCCChHhHHHHHHH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDV----VTYNSLIAGATRNSLLSCSLDLLDEM--LEM--G-IPPDVWSYNSLMHC 75 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~-~~~~~~~~~~l~~~ 75 (410)
-+++.|+....+.+|+...+.| ..|. .+|..|..+|...+++++|++....= ..+ | -.-...+-..|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4789999999999999999988 3343 35666777888888999998764321 111 1 00122233344445
Q ss_pred HHhcCChhHHHHHHHHH----hcCCC-CCChhHHHHHHHHHhhcCc--------------------hHHHHHHHHHHHh-
Q 015246 76 LFQLGKPDEANRVFQDM----ICGDL-TPCTATFNIMLNGLCKNRY--------------------TDNALRMFRGLQK- 129 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~- 129 (410)
+-..|.+++|.-...+- .+.|- ......+..+...|...|. ++.|.+.|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 55566666665433221 11111 1122344445555554332 2334444433211
Q ss_pred ---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCC-CcHHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 130 ---HGFV-PELVTYNILIKGLCKAGRLRTARWILKELG----DSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 130 ---~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
.|-. .-...|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 012345555556666788888877655432 22211 23455677788888889999998888775433
Q ss_pred CC-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 201 GY-----TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 201 ~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
.+ .....+.-.+...|.-..++++|+.++.+-+.. ...-....+-.+..+|...|..++|+.+.....
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11 223344556777777777888888877654331 112245667778888888888888887766554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0016 Score=54.24 Aligned_cols=127 Identities=15% Similarity=0.084 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHH----hcCC-CCCHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEM----EKQGFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMN----KIGF-DSNLE 312 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~ 312 (410)
.|..+...|.-.|+++.|+..-+.= .+-|-. .....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4445555555667777776544321 121211 122355666777777777887777776543 2221 12234
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 313 AYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+...+...|.-..+++.|+..+.+-... ...++..|..++...|..++|+.+.+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556666777677777777776654322 44567777777777777777777665544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.068 Score=48.22 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=52.4
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
+++.++|++... ++.+++... .+...-.+-+. +--|++++|.++|-++.+++ ..+..+.+.|+|-
T Consensus 713 ~AFVrc~dY~Gi-k~vkrl~~i---~s~~~q~aei~--~~~g~feeaek~yld~drrD---------LAielr~klgDwf 777 (1189)
T KOG2041|consen 713 HAFVRCGDYAGI-KLVKRLRTI---HSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWF 777 (1189)
T ss_pred hhhhhhccccch-hHHHHhhhh---hhHHHHhHhHh--hhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHH
Confidence 356677776543 333333321 11112122222 23477777777776665542 2344555666666
Q ss_pred HHHHHHHHHhcC-CCCCChhHHHHHHHHHhhcCchHHHHHHHHH
Q 015246 84 EANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALRMFRG 126 (410)
Q Consensus 84 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (410)
...++++.--.. +-..-...|+.+...++....|++|.+.|..
T Consensus 778 rV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 778 RVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666655432110 0011134555566666665666666555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.017 Score=51.36 Aligned_cols=173 Identities=17% Similarity=0.118 Sum_probs=108.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCch-----HHHHHHHHHHHh----cCChhHH
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDK-----YTHTILIDGLCK----AGNIKGA 295 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a 295 (410)
.-+|.-+... +|| .+..++....=.||-+.+++.+.+..+.+ +.-.. -.|..++..+.. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555543 333 33455555566677777777777765532 21111 123333333322 3466778
Q ss_pred HHHHHHHHhcCCCCCHHHHHH-HHHHHHccCChHHHHHHHHhhccC-------CchhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 296 RLHLEYMNKIGFDSNLEAYNC-IVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
.+++..+.+. -|+...|.. -.+.+...|++++|.+.|++.... ....+..+..++.-..++++|.+.+.+
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888874 456555433 345667788899999888865542 444566777888889999999999999
Q ss_pred HHHcCCCCcHhhHHHHHHH-HhhcCCH-------HHHHHHHHHHHH
Q 015246 368 CLKSGVRILKSAQKAVVDG-LRHSGCR-------REAKKIQSKIRM 405 (410)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~ 405 (410)
+.+.. ..+..+|..+..+ +...|+. ++|.+++.++..
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 98764 4455555555444 4678877 888888877643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0071 Score=44.39 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCcHHH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD-----SGHAPNAIT 173 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 173 (410)
...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344455555556666666665555542 22555555566666666666666555555432 355555444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=51.70 Aligned_cols=89 Identities=12% Similarity=0.033 Sum_probs=43.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCCh
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKI 327 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 327 (410)
.+.|++++|...|+.+.+...... +..+..+...|...|++++|...|+.+.+.- -+.....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444555566555555555421110 2344555555555566666665555555421 011133333444455555556
Q ss_pred HHHHHHHHhhccC
Q 015246 328 DHAINVFESMEVK 340 (410)
Q Consensus 328 ~~A~~~~~~~~~~ 340 (410)
+.|...|+.+...
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.061 Score=45.88 Aligned_cols=137 Identities=9% Similarity=-0.018 Sum_probs=84.6
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHH--HH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVV------TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC--LF 77 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 77 (410)
+.+++++++|.++|.++.+.. ..++. .-+.++++|..+ +.+.....+....+.. | ...|..+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 467899999999999997653 22222 234566776544 5666666666665532 2 2234444433 34
Q ss_pred hcCChhHHHHHHHHHhcC--CCCC------------ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC----CCCCHHHH
Q 015246 78 QLGKPDEANRVFQDMICG--DLTP------------CTATFNIMLNGLCKNRYTDNALRMFRGLQKHG----FVPELVTY 139 (410)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ 139 (410)
+.+.+.+|.+.+...... +..| |-..=+..+.++...|++.++..+++++...= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888887766544 2111 11222456778888999999998888876542 23577777
Q ss_pred HHHHHHHH
Q 015246 140 NILIKGLC 147 (410)
Q Consensus 140 ~~l~~~~~ 147 (410)
+.++-.+.
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 77544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.05 Score=48.55 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-----------H
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-----------E 312 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~ 312 (410)
...+..-+.+...+..|.++|..|-+. ..+++.....+++.+|..+-++.-+. .|+. .
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhh
Confidence 333333344444455555555554321 23344445555555555554443331 2221 1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 313 AYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
-|...-.+|.+.|+-.+|.++++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1223334666777778888888777654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0018 Score=40.88 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=36.4
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 60 (410)
..|.+.++++.|+++++.+...+ |.++..+.....++...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666667777777777666664 445556666666666666777776666666654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.045 Score=43.12 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=33.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCc---HhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRIL---KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
+.+.|.+.|.+-.|..-+++|++. .+.. ...+..+..+|.+.|-.++|.+.-.-+....+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 345566666666666666666654 2222 23344445566666666666665555544443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.091 Score=46.55 Aligned_cols=370 Identities=10% Similarity=0.050 Sum_probs=207.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHH-hcCChhHHHHH
Q 015246 11 SFDAGYTILNRMREAGISPDVV-TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLF-QLGKPDEANRV 88 (410)
Q Consensus 11 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~ 88 (410)
+.+.+..+++.+... .|-.. -|......=.+.|..+.+.++|++-+.. ++.+...|......+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 346666777777754 34433 5566666666778888888888887763 6666666666555443 46777777788
Q ss_pred HHHHhcC-CCC-CChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hc------CCHHHHHH
Q 015246 89 FQDMICG-DLT-PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC---KA------GRLRTARW 157 (410)
Q Consensus 89 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~------~~~~~a~~ 157 (410)
|+..... |.. .+...|...+..-..++++.....++++..+. ....|+....-|. .. ...+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 8777654 322 34567777777777788888888888888764 1222222221111 11 12222222
Q ss_pred HHHHHhh-------------------CCCCCc---HHHHHHHHH-------HHHhccchhHHHHHHHHHHHcC---CC--
Q 015246 158 ILKELGD-------------------SGHAPN---AITYTTIMK-------CCFRNRKYKLGLEILSAMKRKG---YT-- 203 (410)
Q Consensus 158 ~~~~~~~-------------------~~~~~~---~~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~---~~-- 203 (410)
+-..... .-..|. ....+.+.. .+............++.-.+.. ++
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl 292 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL 292 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcc
Confidence 2221111 000011 011111111 1111122222222333322221 11
Q ss_pred --CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 015246 204 --FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 281 (410)
Q Consensus 204 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 281 (410)
++..+|...+..-...|+.+.+.-+++...-. ...-...|-..+.-....|+.+-|..++....+--.+-.+.+...
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 23445667777777889999998888887642 222234455555555555888888887777665443333333322
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHH---HHHHhhccC--CchhHHHHHHHH---
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAI---NVFESMEVK--DSFTYSSMVHNL--- 352 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~--~~~~~~~l~~~~--- 352 (410)
-..-.-..|++..|..+++.+.+. . |+ ...-..-+....+.|..+.+. .++...... +......+..-+
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 233345578999999999999876 3 44 333334455667778888777 444433333 333333333222
Q ss_pred --HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 353 --CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 353 --~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 3367888999999999876 4677777777777665544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.11 Score=47.29 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
.+.-+.-+...|+..+|.++-.+.. .||...|..-+.++...+++++-+++-+... ++.-|.-.+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3333444444555555554444433 3444455555555555555544433322211 12223444455555
Q ss_pred cCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHH
Q 015246 324 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
.|+.++|.+.+-+..... ....+|.+.|++.+|.+.
T Consensus 757 ~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHH
Confidence 555555555544433221 334444455555444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.082 Score=44.83 Aligned_cols=76 Identities=9% Similarity=0.062 Sum_probs=37.8
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcC---CCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKG---YTFDGFGYCTVIAAFVK---IGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
.++-+|....+++..+++++.+.... +......-.....++.+ .|+.++|.+++..+......+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445555666666666666655441 11112222233334444 5666666666666444444555555555554
Q ss_pred HH
Q 015246 250 LY 251 (410)
Q Consensus 250 ~~ 251 (410)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00087 Score=42.97 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCC---Cc-HhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKS--GVR---IL-KSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
.+++.+..+|...|++++|+..|+++++. ... |+ ..++..++.++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677777888888888888888877643 112 22 45777888888899999999998888754
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=53.42 Aligned_cols=124 Identities=15% Similarity=0.029 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc-----CCCC---------CHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cc
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKI-----GFDS---------NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS 342 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 342 (410)
..-...+.+.|++..|...|+++... +.++ -...+..+.-++.+.+++..|++........ |.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34466788899999999998886542 1111 1224455667778888888888877766554 66
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhH-HHHHHHHhhcCCH-HHHHHHHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ-KAVVDGLRHSGCR-REAKKIQSKIRM 405 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~-~~a~~~~~~~~~ 405 (410)
-....-..++...|+++.|+..|+++++. .|+.... ..+...-.+..+. +...++|..|-.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666778888888888888888888865 4443433 3333333333333 334666666643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.038 Score=40.41 Aligned_cols=88 Identities=8% Similarity=-0.118 Sum_probs=51.3
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 015246 180 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 259 (410)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 259 (410)
-+...|++++|..+|.-+.-.+ +.+..-+..|..++-..+++++|...|......+. -|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3455666666666666666544 33444445555555566666666666665554432 244445555666666666666
Q ss_pred HHHHHHHHHh
Q 015246 260 AYLLLDEMEK 269 (410)
Q Consensus 260 a~~~~~~~~~ 269 (410)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666655
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.06 Score=42.42 Aligned_cols=129 Identities=12% Similarity=-0.022 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-----HHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-----LEAYNCI 317 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l 317 (410)
+.+.++.++.-.|.+.-....+++.++...+.++.....+++.-.+.|+.+.|...|++..+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666667777777788888887776566777778888888888888888888887665322222 2223333
Q ss_pred HHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 318 VDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
...|.-.+++..|...+.++... ++...+.-.-+..-.|+..+|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677888888888777665 5556666666667788888899988888865
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.061 Score=42.40 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHH-----H
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT-----I 177 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 177 (410)
..+.++.++.-.+++.-...++.++.+...+.++.....|++.-.+.|+.+.|...|++..+..-..+..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666666777777888888888776666777778888888888888888888886655333333333332 2
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
...+.-.+++..|...+.++...+ +.+....+.-.-+..-.|+..+|.+.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555677777777777777664 445555555555556667788888888887775
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0069 Score=44.46 Aligned_cols=94 Identities=20% Similarity=0.269 Sum_probs=44.9
Q ss_pred chHHHHHHHH---HHHhcCChhHHHHHHHHHHhc--C-CCCCHH------------------HHHHHHHHHHccCChHHH
Q 015246 275 DKYTHTILID---GLCKAGNIKGARLHLEYMNKI--G-FDSNLE------------------AYNCIVDRLGKDGKIDHA 330 (410)
Q Consensus 275 ~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~------------------~~~~l~~~~~~~g~~~~A 330 (410)
|...|..++. .....++.+.+...++++... | +-|+.. ....++..+...|+++.|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3444555533 335678888888888888753 1 111111 112233333445555555
Q ss_pred HHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 331 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 331 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
....+.+... +...|..++.++...|+..+|.+.|+++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5555544433 3344555555555555555555555444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.097 Score=44.39 Aligned_cols=167 Identities=14% Similarity=0.004 Sum_probs=96.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCC---CCCChhHHHHHHHHHhh---cCchHHHHHHHHHHHhCCCCCCHHHHH
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGD---LTPCTATFNIMLNGLCK---NRYTDNALRMFRGLQKHGFVPELVTYN 140 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (410)
.+...++-+|....+++...++.+.+.... +......-....-++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556777777888888877776541 12223333344445555 777888888887755555566777777
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh----HHHHHH----HHHHHcCC-
Q 015246 141 ILIKGLCK---------AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK----LGLEIL----SAMKRKGY- 202 (410)
Q Consensus 141 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~a~~~~----~~~~~~~~- 202 (410)
.+.+.|-+ ....++|+..|.+.-+.. |+...--.++..+...|... +..++- ..+.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77666532 223677788877765532 44333222222233333211 122222 11222332
Q ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 203 --TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 203 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
..+-..+.+++.+..-.|+.++|.+..+++.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345556677888888889999999999888875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.012 Score=41.82 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=23.8
Q ss_pred HccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 322 GKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+.|++++|.+.|+.+... ...+...++.++.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444455555555444443 2233344445555555555555555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.12 Score=44.24 Aligned_cols=125 Identities=15% Similarity=0.206 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--Cc-hhHHHHHHHHHh
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DS-FTYSSMVHNLCK 354 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~ 354 (410)
|...+....+....+.|..+|-++.+.+ ..++..++++++.-++ .|+...|..+|+.-... |. ..-...+..+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3344455555666777778887777766 4456666666666443 56777777777765544 33 333445556667
Q ss_pred cCChhhHHHHHHHHHHcCCCCc--HhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 355 AKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 355 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
.++-..|..+|+..++. +..+ ...|..++..-..-|+...+..+-+++..
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77777777777765543 2222 45677777777777777776666665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0093 Score=47.27 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=41.9
Q ss_pred HhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCCh
Q 015246 287 CKAGNIKGARLHLEYMNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRL 358 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 358 (410)
.+.|++..|...|...++... .-....+.-|..++...|++++|...|..+.+. -+..+.-+..+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344555666665555554310 011233344555555555555555555554433 334444555555555555
Q ss_pred hhHHHHHHHHHHc
Q 015246 359 PSASKLLLSCLKS 371 (410)
Q Consensus 359 ~~A~~~~~~~~~~ 371 (410)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0018 Score=41.45 Aligned_cols=27 Identities=15% Similarity=-0.123 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
.+++.+...|...|++++|+..+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666666666554
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.22 Score=45.44 Aligned_cols=326 Identities=15% Similarity=0.104 Sum_probs=183.3
Q ss_pred cCCCCChHhHHH-----HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch--HHHHHHHHHHHhCCC
Q 015246 60 MGIPPDVWSYNS-----LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT--DNALRMFRGLQKHGF 132 (410)
Q Consensus 60 ~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 132 (410)
.|++.+..-|.. +++-+...+.+..|.++-..+...-..- ...|.....-+.+..+. +++++.+++=.+...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 356555555543 4666777888888888877765322111 45666666666655321 223333332222212
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC-------
Q 015246 133 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA----PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG------- 201 (410)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 201 (410)
.....|..+.+.....|+++-|..+++.-...+.. .+..-+...+.-+...|+.+....++-.+..+-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 24556777888888899999998888754332211 112223444555666777776666665554331
Q ss_pred ----CCCChhhHHHHHH--------HHHHcCCHHHHHHHH--HHHHHc-CCCCChhhHHHHHHHHHhcCCHH--------
Q 015246 202 ----YTFDGFGYCTVIA--------AFVKIGRLKEATDYM--EQMVTD-GVQLDIVSYNTLINLYCKEGKLE-------- 258 (410)
Q Consensus 202 ----~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-------- 258 (410)
.+.....|..+++ .+.+.++-.++...+ +...+. .+.+-..........+.+.....
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1112222222222 111122222222111 110000 01111122233333444333211
Q ss_pred --HHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 259 --AAYLLLDEMEK-QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 259 --~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
.-+++.+.+.. .|.....-+.+.-+..+...|+-..|.++-.+.. -||...|..-+.+++..+++++-.++-.
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 11222222221 1222333456666777788899888888776654 5788889999999999999998777665
Q ss_pred hhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 336 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
... .|..|.-.+.+|.+.|+.++|.+++-+.- | .. ....+|.+.|++.+|.++.-+
T Consensus 740 skk--sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~---l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK--SPIGYLPFVEACLKQGNKDEAKKYIPRVG--G---LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC--CCCCchhHHHHHHhcccHHHHhhhhhccC--C---hH----HHHHHHHHhccHHHHHHHHHH
Confidence 443 47888999999999999999999988873 2 11 566788899999888876543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.18 Score=42.35 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=135.7
Q ss_pred cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHH--HhcCChhHHHHHHHHHhcCCCCCChhHH--HHHHHHHhhcCchHH
Q 015246 44 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL--FQLGKPDEANRVFQDMICGDLTPCTATF--NIMLNGLCKNRYTDN 119 (410)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 119 (410)
.|+-..|.++-.+-.+. +..|...+..++.+- .-.|+++.|.+-|+.|... |..... ..|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45556666555544322 222333444444332 3467777777777777642 222211 122222335666677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCcHHH--HHHHHHHH---HhccchhHHHHH
Q 015246 120 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG-HAPNAIT--YTTIMKCC---FRNRKYKLGLEI 193 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~~ 193 (410)
|.++-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+- .-.-+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 776666665542 2234566667777777777777777776654422 2222211 11122111 112234444444
Q ss_pred HHHHHHcCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 015246 194 LSAMKRKGYTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-G 271 (410)
Q Consensus 194 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 271 (410)
-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+..+.|+ .+ ..|.....-+.+..-+++..+. .
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCCcHHHHHHHHHHHHh
Confidence 4433333 33321 222334556666777777777766665433332 22 2233322223344334333221 1
Q ss_pred CCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHhhcc
Q 015246 272 FEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG-KDGKIDHAINVFESMEV 339 (410)
Q Consensus 272 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 339 (410)
++| +......+.++-...|++..|..--+...+ ..|....|..+.+.-. ..|+-.++...+.+...
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 122 334445555666666666666665555554 3555555655555433 33666666666655543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.042 Score=38.74 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
.++..++.++++.|+.+....+++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 34455555555555555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.02 Score=40.32 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
|..++..++.++++.|+.+....+++..-. +..+... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345667777777777777777777755432 2211100 0000 1122345677777777777
Q ss_pred HHhhcCchHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 015246 110 GLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 148 (410)
+|+..+++..|+++++...+ -+++.+...|..|++-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777654 3455556677777665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.16 Score=39.70 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=13.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHH
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
|..-..+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3333445555666666666555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.026 Score=39.03 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 321 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
....|+.+.|++.|.+.... .+..|+.-..++.-.|+.++|+.-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555544443322 444445445555455555555555554443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.11 Score=36.26 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=82.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHH
Q 015246 251 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 329 (410)
..-.|..++..+++.+..... +..-++.++--....-+-+-..+.++.+-+. +..+ -.-...++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-GGG-S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh-cCchhhcchHHHHHHHHHhcc---
Confidence 345678888888888877652 4555677766555555555555555555432 1111 0112233344443332
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 330 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 330 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
+.......+..+...|+-+.-.+++..+.+.+ .+++..+..+..+|.+.|+..++.+++.++-+.|+
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445566778888999888888998887654 78888889999999999999999999999888775
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.022 Score=48.96 Aligned_cols=64 Identities=16% Similarity=0.050 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++....
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777888888888888888888887774 4442 34777888888888888888888877765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.24 Score=40.03 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=57.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHH
Q 015246 216 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 295 (410)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (410)
....|++.+|...|......... +......++.+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34456666666666666554222 34445555666666666666666666554331111111111222333333333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhcc
Q 015246 296 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 339 (410)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (410)
..+-++.-.. +.|...-..+...+...|+.+.|.+.+-.+..
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333331 22455555555666666666666655544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0066 Score=33.59 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
.++..+..+|...|++++|+++|+++++.. |.|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 456777788888888888888888888763 44555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.049 Score=45.77 Aligned_cols=97 Identities=15% Similarity=0.013 Sum_probs=63.2
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG 145 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (410)
..++..+.-++.+.+++..|++..+..+..+ ++|.-....-..++...|+++.|...|+++++.. +.|...-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777777888888888777777766 6677777777777778888888888888877752 2244444445444
Q ss_pred HHhcCCHH-HHHHHHHHHhh
Q 015246 146 LCKAGRLR-TARWILKELGD 164 (410)
Q Consensus 146 ~~~~~~~~-~a~~~~~~~~~ 164 (410)
-.+..... ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444433 33666666644
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.25 Score=39.92 Aligned_cols=145 Identities=14% Similarity=0.053 Sum_probs=75.4
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
.......|++.+|...|+........ +...--.++++|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34455677777777777777665322 45555667777777777777777777765532222222222223333343333
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEG 255 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 255 (410)
.+...+-.++-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333333322 33444555555666666666666665555544311 113333444444444444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=50.48 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cc---hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHH
Q 015246 308 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 381 (410)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 381 (410)
+.+...++.+..+|...|++++|+..|++.... +. .+|..+..+|...|+.++|+..++++++.+ .+ .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 445788999999999999999999999998766 22 248999999999999999999999999753 22 222
Q ss_pred HHHH--HHhhcCCHHHHHHHHHHHHHccCC
Q 015246 382 AVVD--GLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 382 ~l~~--~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+.. .+....+..+..++++..++.|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 112233445777788877777653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.12 Score=42.35 Aligned_cols=151 Identities=10% Similarity=-0.018 Sum_probs=82.6
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI----VSYNTLINLYCKEGKLE 258 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 258 (410)
-.|+..+|-..++++++.- |.|...+...=.+|...|+.+.-...++++... -.++. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3566666666666666552 556556665566666777776666666666543 12232 22223334455667777
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHccCChHHHHHHH
Q 015246 259 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD----SNLEAYNCIVDRLGKDGKIDHAINVF 334 (410)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (410)
+|.+.-++..+.+ +.|..........+.-.|++.++.++..+-... .. .-...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777776666654 335555555566666667777766665543321 11 00112222333344456677777776
Q ss_pred Hhh
Q 015246 335 ESM 337 (410)
Q Consensus 335 ~~~ 337 (410)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 643
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.12 Score=42.93 Aligned_cols=223 Identities=9% Similarity=0.003 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHHHhhC--CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc--CCCCC---hhhHHHHHHHHHHc
Q 015246 147 CKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFD---GFGYCTVIAAFVKI 219 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~ 219 (410)
....+.++++..+.+.... +......++..+..+....|.+++++..--.-++. ..... -..|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555432 11112334445555566666666554432221111 00111 11233333333333
Q ss_pred CCHHHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHhcC
Q 015246 220 GRLKEATDYMEQMVTD-GVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-----CDKYTHTILIDGLCKAG 290 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 290 (410)
-++.+++.+-..-... |..|. -.....+..++...+.++++++.|+...+.... ....++..+...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3334444333322221 11111 112233444555556666666666665432111 11234555666666666
Q ss_pred ChhHHHHHHHHHHhc----CCCCCH-----HHHHHHHHHHHccCChHHHHHHHHhhccC-----Cch----hHHHHHHHH
Q 015246 291 NIKGARLHLEYMNKI----GFDSNL-----EAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSF----TYSSMVHNL 352 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~----~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~l~~~~ 352 (410)
++++|..+..+..+. ++..-. .....+.-++...|+...|.+.-++..+. |.. ....+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 666666655544321 111111 11222333445555555555555544332 222 223344455
Q ss_pred HhcCChhhHHHHHHHHH
Q 015246 353 CKAKRLPSASKLLLSCL 369 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~ 369 (410)
...|+.+.|..-|+.+.
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 55566666555555554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.11 Score=42.68 Aligned_cols=153 Identities=13% Similarity=0.044 Sum_probs=78.5
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh----HHHHHHHHHhhcCc
Q 015246 41 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA----TFNIMLNGLCKNRY 116 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 116 (410)
....|+..+|-..++++.+. .|.|..++...-++|.-.|+.+.-...++++...- .++.. ....+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 34556666666666666654 44455555555566666666666666666655431 22222 22233334445666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---CcHHHHHHHHHHHHhccchhHHHHH
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
+++|.+.-++..+.+. .|...-.++...+-..|++.++.+...+-...=-. .-..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 6666666666665532 25555555666666666666666655543221000 0011111222333444666666666
Q ss_pred HHH
Q 015246 194 LSA 196 (410)
Q Consensus 194 ~~~ 196 (410)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.34 Score=40.31 Aligned_cols=165 Identities=14% Similarity=0.129 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCChhhH
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRK-GYTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-----VQLDIVSY 244 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 244 (410)
|..+.+++.+..++.+++.+-..-... |..+ .......+..++...+.++++.+.|+...+.. ......++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 444444444445555555544443322 1111 11223345555666666777777776665431 11123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-----hHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCCC-
Q 015246 245 NTLINLYCKEGKLEAAYLLLDEMEKQ----GFECD-----KYTHTILIDGLCKAGNIKGARLHLEYMNK----IGFDSN- 310 (410)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~- 310 (410)
..+...|.+..|+++|.-+..+..+. ++..- ......+..++...|+..+|.+..++..+ .|-.+.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 66777777777777776655544321 21111 11223344556677777777777766543 232221
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 311 LEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
......+.+.|...|+.+.|+.-++...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234456677777788777777776544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.071 Score=42.47 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=41.5
Q ss_pred HhccchhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCH
Q 015246 182 FRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ--LDIVSYNTLINLYCKEGKL 257 (410)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 257 (410)
.+.|++..|...|...++.. -......+-.|..++...|++++|..+|..+.+.-.. .-+..+-.+..+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 34455555555555555442 0112223334555555555555555555555543111 1123444444455555555
Q ss_pred HHHHHHHHHHHhC
Q 015246 258 EAAYLLLDEMEKQ 270 (410)
Q Consensus 258 ~~a~~~~~~~~~~ 270 (410)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.12 Score=45.54 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (410)
.+.++..+-+.|-++.|+++..+ +. .-.....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 44555555555555555554221 11 1122333445555554433221 244455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+.....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555555554432 334444444555555444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0067 Score=33.57 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 378 SAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
.++..+..+|.+.|++++|.++++++.+..|++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467889999999999999999999999998875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.18 Score=36.10 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHhccchhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 181 CFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
..+.|++++|.+.|+.+...- -+-...+-..++.+|.+.++++.|...+++.++.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344555555555555555441 01122333444555555555555555555555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.31 Score=38.62 Aligned_cols=53 Identities=19% Similarity=0.012 Sum_probs=34.1
Q ss_pred HHHHHHccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+..-|.+.|.+-.|..-++++.+. ....+-.+..+|...|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445667777777777777776655 23345556667777777777766655543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.14 Score=35.64 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=40.5
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh---HHHHHHHHHhhcCc
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA---TFNIMLNGLCKNRY 116 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 116 (410)
+++..|+.+.|++.|.+.... .|-....||.-..++.-.|+.++|++=+++..+..-+.+.. .|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344455555555555555443 12244455555555555555555555555544431111211 22222234444555
Q ss_pred hHHHHHHHHHHHh
Q 015246 117 TDNALRMFRGLQK 129 (410)
Q Consensus 117 ~~~a~~~~~~~~~ 129 (410)
.+.|..-|+..-+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 5555555544433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.22 Score=36.66 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh-HHH--H
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA-TFN--I 106 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~ 106 (410)
...|..-+. +++.+..++|+.-|..+.+.|...= ..............|+...|...|+++-.....|-.. -.. .
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444443 3456667778888888777654311 1122233445567778888888888776543223222 111 1
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015246 107 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (410)
-.-.+...|.++......+.+...+.+.-...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 122455677777777777777665554445555666667777888888888888776643333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.12 Score=45.47 Aligned_cols=158 Identities=17% Similarity=0.171 Sum_probs=99.3
Q ss_pred HHHHhcCChhHHHHHHH--HHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 74 HCLFQLGKPDEANRVFQ--DMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 74 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
....-.++++.+.+... ++. ..+ +....+.++..+.+.|..+.|+++...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34455678888766665 222 111 24557778888888888888887654322 22456677888
Q ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 015246 152 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 231 (410)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (410)
++.|.++.++. ++...|..|.......|+++.|++.|.+..+ +..++-.|...|+.+...++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88887776432 4677899999999999999998888876542 45566777888888888887777
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 232 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
....| -++....++.-.|+.++..+++.+.
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66553 2455566667778888887776553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.54 Score=40.51 Aligned_cols=223 Identities=11% Similarity=0.055 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHH-------HHHHHHH--
Q 015246 151 RLRTARWILKELGDSGHAP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC-------TVIAAFV-- 217 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~-- 217 (410)
+.+++..+.+.+....+.+ -..++..++....+.++...|.+.+.-+.-.. |+...-. .+....+
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~D 351 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCED 351 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcc
Confidence 4555555555444332111 23456677777777777777777777665442 2222111 1111112
Q ss_pred --HcCCHHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCchHH----HHHHHHHHH
Q 015246 218 --KIGRLKEATDYMEQMVTDGVQLDIVSYNTLI---NLYCKEGK-LEAAYLLLDEMEKQGFECDKYT----HTILIDGLC 287 (410)
Q Consensus 218 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~ 287 (410)
...+...=..+++.+...++. .......++ .-+-+.|. -++|+.+++.+.+-. .-|... +..+=.+|.
T Consensus 352 D~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 352 DESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYK 429 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 111223334444444443221 111122222 23444554 777888888776542 123322 222223333
Q ss_pred h---cCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHH--HHccCChHHHHHH--HHhhccCCchhHHHHHHHHHhcC
Q 015246 288 K---AGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDR--LGKDGKIDHAINV--FESMEVKDSFTYSSMVHNLCKAK 356 (410)
Q Consensus 288 ~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~--~~~~~~~~~~~~~~l~~~~~~~~ 356 (410)
. ...+..-..+-+-+.+.|++|- ...-+.+.++ +...|++.++.-. |-.-..+++.+|..++-++...+
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENK 509 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 2 2344455555555666677663 3444555443 4567888887643 33334447788888888888888
Q ss_pred ChhhHHHHHHHHHHcCCCCcHhhHHH
Q 015246 357 RLPSASKLLLSCLKSGVRILKSAQKA 382 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (410)
++++|...+..+ ||+..++..
T Consensus 510 ~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 510 RYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred hHHHHHHHHHhC-----CCchhhHHH
Confidence 888888888775 666655543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.015 Score=29.79 Aligned_cols=32 Identities=16% Similarity=-0.049 Sum_probs=21.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 379 AQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
.+..+...+...|++++|++.+++..+..|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.23 Score=34.70 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=72.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANR 87 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 87 (410)
-.|.+++..++..+.... .+..-+|-+|......-+-+-..++++.+-+. -|.. ..|+......
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHHH
Confidence 457777788888777764 34555565565555544444444555444321 1211 1222222222
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 015246 88 VFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 167 (410)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 167 (410)
.+-.+ ..+.......+..+...|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22221 122334445566777777777777777777653 345777777777888888888888888888877765
Q ss_pred C
Q 015246 168 A 168 (410)
Q Consensus 168 ~ 168 (410)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.73 Score=40.12 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHH
Q 015246 49 CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 49 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (410)
+|.++-+...+.+. .|..+...+..+....++++.|..+|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444444444432 244444445554455555555555555555443 3333444444444444555555555555544
Q ss_pred h
Q 015246 129 K 129 (410)
Q Consensus 129 ~ 129 (410)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 4
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.6 Score=40.86 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHccCChHHHHHHHHhhccC-----CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
+..++.+.|+.++|.+.++++.+. +......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444445555555544444322 1223444445555555555555555444
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.3 Score=35.46 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
++..+...+.......+++.+...+. .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33444444444445555554444432 344444444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.64 Score=39.09 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+-.. . -++.-|..++.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333444444455444444433331 23444455555555555555544433221 0 1223444555555555
Q ss_pred CChhHHHHHHHH
Q 015246 290 GNIKGARLHLEY 301 (410)
Q Consensus 290 ~~~~~a~~~~~~ 301 (410)
|+..+|..+..+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.25 Score=42.90 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=100.7
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHhC-CCCCc-hHHHHHHHHHHHhc---------CChhHHHHHHHHHH
Q 015246 242 VSY--NTLINLYCKE-----GKLEAAYLLLDEMEKQ-GFECD-KYTHTILIDGLCKA---------GNIKGARLHLEYMN 303 (410)
Q Consensus 242 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 303 (410)
..| ..++.+.... ...+.|..+|.+.... ...|+ ...|..+..++... ....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 2356788888888822 23444 33444444433221 23446677777777
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH---
Q 015246 304 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK--- 377 (410)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 377 (410)
+.+ +.|+.....+..+....++++.|...|++.... ...+|......+.-.|+.++|.+.+++.++. .|..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHH
Confidence 764 557777777888778888899999999988766 4456777777778899999999999998755 4432
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 378 SAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
......+..|+.. ..++|++++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2333333345544 47777777654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.77 Score=37.98 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=58.4
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcC-ChhhHHHHHHHHHHc----C----CCCC-----
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSL-------IAGATRNS-LLSCSLDLLDEMLEM----G----IPPD----- 65 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 65 (410)
.++|+++.|...+.+........++.....+ .......+ +++.|..++++..+. + ..|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4678888888888877754311122221111 22223344 666666666554432 0 1112
Q ss_pred hHhHHHHHHHHHhcCChh---HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 66 VWSYNSLMHCLFQLGKPD---EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
..++..++.++...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 123444555555544433 3344444443221 222334434445555556666666666666554
|
It is also involved in sporulation []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.78 Score=37.98 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhccchh---HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYK---LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
+...++.++...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+..|... +......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 3444555555555443 3444444443332 223344445555555566777777777777665 2212333444443
Q ss_pred HHHh--cCCHHHHHHHHHHHHhC
Q 015246 250 LYCK--EGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 250 ~~~~--~~~~~~a~~~~~~~~~~ 270 (410)
.+.. ......+...+..+...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHH
Confidence 3311 12233444555444433
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.63 Score=36.58 Aligned_cols=206 Identities=10% Similarity=0.038 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 182 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (410)
.|..-..+|...+++++|...+.+..+. ...+...| ...+.++.|.-+.+++... +--...|..-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455677777888887777766532 12122222 2233345555555555542 112334455556667
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCCH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---G--VQLDIVSYNTLINLYCKEGKL 257 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~ 257 (410)
..|.++.|-..+++.-+. ...-++++|+++|++...- + ...-...+..+...+++...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777666666554432 1223344444444443321 0 000112233444456666666
Q ss_pred HHHHHHHHHHHhC----CCCCch-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHccCChHH
Q 015246 258 EAAYLLLDEMEKQ----GFECDK-YTHTILIDGLCKAGNIKGARLHLEYMNKIG---FDSNLEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 258 ~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 329 (410)
++|-..+.+-... .-.++. ..|...|..+....++..|...++.-.+.+ -+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6665544432211 011121 235555556666778888888887744321 122345556666665 4567777
Q ss_pred HHHHHH
Q 015246 330 AINVFE 335 (410)
Q Consensus 330 A~~~~~ 335 (410)
+.+++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 666553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.2 Score=39.88 Aligned_cols=382 Identities=11% Similarity=0.033 Sum_probs=221.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 16 YTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
.+.|+..... ..+...|..++.--......+.+...+..+... .|.-.--|......=.+.|..+.+.++|++-+.
T Consensus 32 ~~~we~~~~~--~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~- 107 (577)
T KOG1258|consen 32 LDYWEILSND--SLDFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ- 107 (577)
T ss_pred hhHhhccccc--hhcccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Confidence 3444444432 345667777776655556667778888888754 332334566667777789999999999999875
Q ss_pred CCCCChhHHHHHHHHHh-hcCchHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHH
Q 015246 96 DLTPCTATFNIMLNGLC-KNRYTDNALRMFRGLQKH-GFV-PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 172 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (410)
+++.+...|...+..+. ..|+.+.....|+..... |.. .+...|...+..-...+++.....+++++++.. ..
T Consensus 108 aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~ 183 (577)
T KOG1258|consen 108 AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LH 183 (577)
T ss_pred hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hh
Confidence 45777788877665544 467788888888887763 221 245678888888888999999999999998742 12
Q ss_pred HHHHHHHHHH----h-----ccchhHHHHHHHHHHH--------------------cCCCCCh---hhHHHHHHH-----
Q 015246 173 TYTTIMKCCF----R-----NRKYKLGLEILSAMKR--------------------KGYTFDG---FGYCTVIAA----- 215 (410)
Q Consensus 173 ~~~~l~~~~~----~-----~~~~~~a~~~~~~~~~--------------------~~~~~~~---~~~~~l~~~----- 215 (410)
.++....-|. . ....+++.++-..... .+ .|.. ...+.+...
T Consensus 184 ~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 184 QLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDST-DPSKSLTEEKTILKRIVSIHE 262 (577)
T ss_pred HhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHH
Confidence 2222222211 1 1223333333222221 01 1110 011111111
Q ss_pred --HHHcCCHHHHHHHHHHHHHc---CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 015246 216 --FVKIGRLKEATDYMEQMVTD---GV----QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 286 (410)
Q Consensus 216 --~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (410)
+............++.-... .+ +++..+|...+.--...|+.+.+.-+++++.-.- ..-...|-..++-.
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m 341 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWM 341 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHH
Confidence 11112222233333333322 12 2245678888888889999999999999886431 11233455555556
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHH-
Q 015246 287 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSAS- 362 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~- 362 (410)
...|+.+-+..++....+.-.+..+.+-..-..-.-..|+++.|..+++.+...-+ ..-..-+....+.|+.+.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 66699999988888777653332222222222233456899999999999887622 12222234456678877777
Q ss_pred --HHHHHHHHcCCCCcHhh----HHHHHHH-HhhcCCHHHHHHHHHHHHHccCC
Q 015246 363 --KLLLSCLKSGVRILKSA----QKAVVDG-LRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 363 --~~~~~~~~~~~~~~~~~----~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+++....+ | .-+..+ +....+. +.-.++.+.|..++.++....++
T Consensus 422 ~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 422 KNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD 473 (577)
T ss_pred HHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc
Confidence 33333322 2 222222 2222222 44578899999999888766554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.021 Score=29.31 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 379 AQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+|..++.+|...|++++|...|+++.+.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555556666666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.025 Score=29.57 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.014 Score=30.05 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=25.4
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHH
Q 015246 365 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 397 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 397 (410)
|+++++.. |.+...|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666664 667888999999999999998886
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.85 Score=36.37 Aligned_cols=221 Identities=17% Similarity=0.038 Sum_probs=129.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHcCCHHHHH
Q 015246 149 AGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (410)
.+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555555532221 2455666666777777777777777776652 22444555666666667777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLIN-LYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777777643322 122222223 57777778888877777754221 0122333333344556677777777777777
Q ss_pred hcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 304 KIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 304 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
... .. ....+..+...+...++++.|...+.......+ ..+......+...+..+++...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 642 22 355566666667777777777777776665532 33444444444555567777777666644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.61 Score=33.82 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=5.3
Q ss_pred CChhHHHHHHHHHh
Q 015246 80 GKPDEANRVFQDMI 93 (410)
Q Consensus 80 ~~~~~a~~~~~~~~ 93 (410)
+.+.....+++.+.
T Consensus 21 ~~~~~l~~yLe~~~ 34 (140)
T smart00299 21 NLLEELIPYLESAL 34 (140)
T ss_pred CcHHHHHHHHHHHH
Confidence 33333333333333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.1 Score=39.39 Aligned_cols=88 Identities=17% Similarity=0.065 Sum_probs=60.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHH---HHHHHhc
Q 015246 284 DGLCKAGNIKGARLHLEYMNKIGFDSNLE-----AYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM---VHNLCKA 355 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~ 355 (410)
.-+...|++++|..-|...+.. +++... .|..-..++.+.+.++.|+.-.......++..-.++ ..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3467889999999999888875 333222 233334466778888888877777776655444444 3467777
Q ss_pred CChhhHHHHHHHHHHcC
Q 015246 356 KRLPSASKLLLSCLKSG 372 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~ 372 (410)
..+++|++-|++.++..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888663
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.25 Score=39.59 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 015246 29 PDVVTYNSLIAGATR-----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTAT 103 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (410)
.|..+|...+..+.. .+.++-....+..|.+.|+..|..+|+.|+..+-+..- .|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH-
Confidence 345555555555443 23444455556666666666666666666655433211 11100
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (410)
+....--| -.+-+-++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 00000011 112345777888888888888888888888888776653
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.88 Score=33.83 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 258 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 258 (410)
+.++.+...+++|+...+..++..+.+.|++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344444455555555555555555555433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.8 Score=37.43 Aligned_cols=129 Identities=13% Similarity=0.198 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
.|...+....+..-.+.|..+|-++.+.+ ..++...+++++..++ .|+..-|..+|+.-... .+.+..-....+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 44455555556666677777777777666 4556666666666554 46666777777665553 222233334455556
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
...++-+.|..+|+...+. +..+ ...|..++.--..-|+...+..+=+++.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6667777777777644332 1111 34566666666666776666666666655
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.045 Score=27.70 Aligned_cols=31 Identities=10% Similarity=-0.083 Sum_probs=21.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 380 QKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 380 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
+..++.++.+.|++++|.+.|+++...-|+|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3455666667777777777777777766654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.33 Score=39.42 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCcHHHHHH
Q 015246 102 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD-----SGHAPNAITYTT 176 (410)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 176 (410)
.++..++..+...++++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455666777777777777777777777663 33667777777777777777777777776644 467777776666
Q ss_pred HHHH
Q 015246 177 IMKC 180 (410)
Q Consensus 177 l~~~ 180 (410)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6555
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=34.03 Aligned_cols=145 Identities=14% Similarity=0.034 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH--HHHHHHHhcCChhHHHHHHHHHH
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT--ILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
++.++.-.......-...|..++.... .+.+ +.......+...+.......+. .+...+...+++++|...++...
T Consensus 39 W~ywq~~q~~q~~~AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 39 WRYWQSHQVEQAQEASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444333222223444555555443 2333 4444445555442221222222 23445667778888887777766
Q ss_pred hcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 304 KIGFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 304 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
......+ ..+--.|.......|.+|+|+..++..... .+.....-.+.+...|+.++|...|++.+..+
T Consensus 117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5311111 111223445666777788888777777666 33334455667777788888888887777664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.09 E-value=3 Score=39.18 Aligned_cols=52 Identities=6% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
++..+....+++.+..+.+...+.++..|..++..+++.+..+.-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 4455566666777777777666667777777777777777655544444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.28 Score=39.27 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=55.7
Q ss_pred CCChhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------CHHHHH
Q 015246 203 TFDGFGYCTVIAAFVK-----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG----------------KLEAAY 261 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 261 (410)
..|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-. +-+=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455566666665543 3567777777888888888888888888887764432 112245
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 262 LLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
+++++|...|+.||..+-..++.++.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 55566666666666665555565555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.28 Score=39.83 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhc-----CCCCCChhHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC-----GDLTPCTATF 104 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 104 (410)
-..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 35678889999999999999999999998874 34788899999999999999999999988765 4888888888
Q ss_pred HHHHHHHh
Q 015246 105 NIMLNGLC 112 (410)
Q Consensus 105 ~~l~~~~~ 112 (410)
........
T Consensus 231 ~~y~~~~~ 238 (280)
T COG3629 231 ALYEEILR 238 (280)
T ss_pred HHHHHHhc
Confidence 87777744
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=1 Score=33.34 Aligned_cols=136 Identities=12% Similarity=0.102 Sum_probs=97.6
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh-HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHH-HHHH-
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV-TYNI- 141 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~- 141 (410)
+...|...+. +...+..++|+.-|..+.+.|...-+. ..-.........|+...|...|+++-.....|-.. -..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4556666655 567788999999999999876432222 12223445678999999999999998764444433 1111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC
Q 015246 142 -LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 201 (410)
Q Consensus 142 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (410)
-.-.+...|.++.+....+.+...+-+.....-..|.-+..+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 123467899999999999888776655556666778788899999999999999988753
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.81 Score=34.74 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc--HHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDSGHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKR 199 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (410)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666655433322 23344555555666666666665555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.76 E-value=3 Score=37.55 Aligned_cols=161 Identities=13% Similarity=0.139 Sum_probs=81.1
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCcHHHH
Q 015246 105 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV------TYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITY 174 (410)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (410)
..++....-.|+-+.+++.+.+..+.+---.+. .|+..+..++. ..+.+.+.++++.+... -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 345555555666666666666655432111111 22222322222 34456666777666653 2444444
Q ss_pred HHH-HHHHHhccchhHHHHHHHHHHHcC--C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-H
Q 015246 175 TTI-MKCCFRNRKYKLGLEILSAMKRKG--Y-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI-N 249 (410)
Q Consensus 175 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~ 249 (410)
... .+.+...|++++|++.|+...... . ......+-.+..++.-..++++|...+..+.+.+ .-+...|.-+. .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 332 345556677777777777544321 0 1122334445556666677777777777776642 11223333222 2
Q ss_pred HHHhcCCH-------HHHHHHHHHHH
Q 015246 250 LYCKEGKL-------EAAYLLLDEME 268 (410)
Q Consensus 250 ~~~~~~~~-------~~a~~~~~~~~ 268 (410)
++...++. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34445555 66666666653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.7 Score=34.54 Aligned_cols=117 Identities=19% Similarity=0.099 Sum_probs=53.1
Q ss_pred CChhhHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHhcC-CCCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 45 SLLSCSLDLLDEMLEMGIP-PDVWSYNSLMHCLFQLGKPDEANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 02344455555555566666666555555431 113334444444455555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 015246 123 MFRGLQKHGFVPELVTYNILIK-GLCKAGRLRTARWILKEL 162 (410)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~ 162 (410)
.+.........+ ......... .+...|+++.+...+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555432221 111111122 444555555555555554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.083 Score=27.56 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 379 AQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
++..+...|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888888888888888888883
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.11 Score=26.50 Aligned_cols=31 Identities=16% Similarity=-0.083 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 379 AQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+|..+...|...|++++|.+.|++..+.+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3445555666666666666666666555543
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.34 E-value=5.9 Score=39.05 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchh---HHHHHHHHHhc
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT---YSSMVHNLCKA 355 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~ 355 (410)
|......+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|..+-.++...-... -..|+.-+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 33344444555666666666655432 1234566777777777777777666552222 25566667777
Q ss_pred CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 356 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
+++-+|-++..+... .| ...+..|++.-.|++|.++...
T Consensus 1013 ~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred ccchhHHHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 777777777766642 11 1222334444455555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.68 Score=35.13 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC--hhHHHHHHHHHhhcCchHHHHHHHHHHHh
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC--TATFNIMLNGLCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (410)
.+..+...|.+.|+.+.|.+.|.++......+. ...+-.+++.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666655432222 33445555666666666666666555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.31 E-value=3.5 Score=36.41 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
-..+..++.+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+..
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 344555556667777777777766653211 123355566666777777777766666654
|
The molecular function of this protein is uncertain. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.24 E-value=4.9 Score=37.72 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=45.5
Q ss_pred HHHHHHHHccCChHHHHHHHHhhccCCc--hhHHHHH-HHHHhcCC-----------hhhHHHHHHHHHHcC-----CCC
Q 015246 315 NCIVDRLGKDGKIDHAINVFESMEVKDS--FTYSSMV-HNLCKAKR-----------LPSASKLLLSCLKSG-----VRI 375 (410)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~-~~~~~~~~-----------~~~A~~~~~~~~~~~-----~~~ 375 (410)
...+.-+...|++++|..+|..+.+.+. ...+.++ .+...... ...|..+.+.....+ +.+
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 3344556778888888888887765522 2233333 22222222 123344444333211 111
Q ss_pred -cHhhHHHHHHH-----HhhcCCHHHHHHHHHHHH
Q 015246 376 -LKSAQKAVVDG-----LRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 376 -~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~ 404 (410)
...|+..|+.. +.+.|++++|.+.++++.
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 23455544432 578999999999888763
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.1 Score=33.14 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 342 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 342 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
..+|..+..-+...|+.++|..+|+-.+..+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3466667777777777777777777776543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.32 Score=31.80 Aligned_cols=49 Identities=12% Similarity=-0.083 Sum_probs=39.8
Q ss_pred ChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 357 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
+.-++.+-++.+...++-|++....+.+++|.+.+|+.-|.++++-++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4456777777777778888888888888899999999999988887763
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.04 E-value=6.8 Score=38.66 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
|.+....+.....+++|.-.|+..-+ ....+.+|..+|++.+|..+..++.... .--..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHH
Confidence 33344444555666666666554432 1234556677777777777766554310 0011122556666777
Q ss_pred cCChHHHHHHHHhhccC
Q 015246 324 DGKIDHAINVFESMEVK 340 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~ 340 (410)
.+++-+|-++..+....
T Consensus 1012 ~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred cccchhHHHHHHHHhcC
Confidence 77777777777666554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=5.3 Score=36.95 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH--HH-HHhcCCHHHHHHHHHHHhh-------CCCCCcHHHHHHHHHHHHhcc-
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILI--KG-LCKAGRLRTARWILKELGD-------SGHAPNAITYTTIMKCCFRNR- 185 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 185 (410)
...|.++++...+.|.. ........+ .. +....+++.|+..|+.+.. .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 46788888888877532 112211122 22 4466789999999988866 44 2234455666666543
Q ss_pred ----chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCC
Q 015246 186 ----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC----KEGK 256 (410)
Q Consensus 186 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 256 (410)
+...|..++.+.-+.| .|+...+...+..... ..+...|.++|......|.. ..+-.+..+|. ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 6677999999888887 5555443333322222 24678999999999887643 22223333222 2347
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH---Hc----cCChHH
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GK----DGKIDH 329 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~ 329 (410)
...|..++.+..+.| .|....-...+..+.. +++..+...+..+.+.|..-....-..+.... .. ..+...
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 888999999998887 3332222223333333 77777777666666554332111111111111 11 124555
Q ss_pred HHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh----cCCHHHHHHHH
Q 015246 330 AINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQ 400 (410)
Q Consensus 330 A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 400 (410)
+...+.+.... +......+...|.. ..+++.|...|......+ ......+...+.. .. ...|.+.+
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence 66666665555 66666666665544 344777888888777654 3444444444322 22 67888888
Q ss_pred HHHHHcc
Q 015246 401 SKIRMAK 407 (410)
Q Consensus 401 ~~~~~~~ 407 (410)
.+..+.+
T Consensus 533 ~~~~~~~ 539 (552)
T KOG1550|consen 533 DQASEED 539 (552)
T ss_pred HHHHhcC
Confidence 7776644
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.88 E-value=5.9 Score=37.42 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=87.9
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
-+.+.|++++|...+-+-... +.|+ .+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 467789999999888776642 1222 2456666777777888889999998875 66667789999999999888
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
-.+..+... .|.- ..-....+..+.+.+-.++|..+-..... +......+ +-..+++++|++.+..+
T Consensus 450 L~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 877776554 2211 11123445566666666666655444332 22222222 33455666666665544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.5 Score=36.02 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=53.1
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG---VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 279 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 279 (410)
+....+...++..-....+++.++..+-++...- ..|+... ...++.+ -.-++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3344444555544445556666666666655430 1111111 1122222 223455666666666666666676667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..++..+.+.+++.+|.++...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 76777766666666666666555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.6 Score=32.68 Aligned_cols=181 Identities=13% Similarity=0.010 Sum_probs=102.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHH
Q 015246 219 IGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 297 (410)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (410)
.|-+.-|.--|.+.... .| -+.+||-+.--+...|+++.|.+.|+...+....-+-...|.- -++.-.|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhHH
Confidence 34444444445444443 33 3567888887888889999999999888877433222222222 23445688888877
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHH-HHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 015246 298 HLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAIN-VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 375 (410)
Q Consensus 298 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 375 (410)
-+...-+.+. .|-...|-.+. ...-++.+|.. +.++....+..-|...+..+.- |+.. ...+++++.... ..
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~~ 228 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-TD 228 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-cc
Confidence 7766655431 12222222222 22335666654 4445555565666555444332 2221 122333333211 11
Q ss_pred -------cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 376 -------LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 376 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
-..||..+..-+...|+.++|..+|+-....++
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 135788888899999999999999998776554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.3 Score=40.28 Aligned_cols=91 Identities=14% Similarity=-0.109 Sum_probs=57.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccCC---chhHHHHHHHHHhcCC
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKR 357 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 357 (410)
-...|.+.|.+++|+..|...... .| ++.++..-..+|.+..++..|..-.......| ...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 355677778888888888776663 34 66666667777777777777766555554442 2344444444455666
Q ss_pred hhhHHHHHHHHHHcCCCCc
Q 015246 358 LPSASKLLLSCLKSGVRIL 376 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~~~ 376 (410)
..+|.+-++..++. .|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 66676666666644 454
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.4 Score=32.23 Aligned_cols=86 Identities=15% Similarity=0.068 Sum_probs=44.5
Q ss_pred HHHHccCChHHHHHHHHhhccC--C----chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 319 DRLGKDGKIDHAINVFESMEVK--D----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
..+...|++++|..-++..... | ..+-..|.+.....|.+++|+..++...+.++ .......-++++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 4455666666666666644432 1 11223344455566666666666665543322 12223334455666666
Q ss_pred HHHHHHHHHHHHHc
Q 015246 393 RREAKKIQSKIRMA 406 (410)
Q Consensus 393 ~~~a~~~~~~~~~~ 406 (410)
.++|+.-|++..+.
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.85 Score=29.93 Aligned_cols=40 Identities=10% Similarity=-0.027 Sum_probs=17.0
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
-++.+....+.|++......+++|.+.+++..|.++++-+
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.4 Score=31.61 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHH
Q 015246 52 DLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
+.++.+.+.+++|+...+..+++.+.+.|++....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444555666666666666666666655444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.21 Score=25.48 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+|..++.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45777888888888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.46 Score=31.47 Aligned_cols=48 Identities=13% Similarity=-0.066 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 359 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 359 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
-+..+-++.+...++-|++......+.+|.+.+++.-|.++++-++.+
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356666777777777888888888888888888888888888877654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.6 Score=28.99 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=16.1
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
-++.+....+.|++......+++|.+.+++..|.++++-+.
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.22 Score=25.25 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
..|..+..++...|++++|++.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777888888888888888888755
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=6.1 Score=34.75 Aligned_cols=122 Identities=10% Similarity=-0.016 Sum_probs=81.5
Q ss_pred HhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 015246 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 261 (410)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 261 (410)
...|+.-.|-+-+....+.- +-++.........+...|+++.+...+...... +.....+...+++.....|+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566665554444444331 334444444455667789999998888776554 3445667788888888999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 262 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
..-.-|....++ ++.............|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 988888766544 55555544445556778888888888887653
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.80 E-value=3.9 Score=32.17 Aligned_cols=14 Identities=21% Similarity=-0.002 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHH
Q 015246 255 GKLEAAYLLLDEME 268 (410)
Q Consensus 255 ~~~~~a~~~~~~~~ 268 (410)
+++.+|...++...
T Consensus 87 ~~~~eAv~cL~~ai 100 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAI 100 (288)
T ss_pred cChHHHHHHHHHHH
Confidence 35555555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.24 Score=25.39 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=17.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 015246 20 NRMREAGISPDVVTYNSLIAGATRNSLLSCSL 51 (410)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 51 (410)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3334433 345556666666666666666554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.7 Score=33.36 Aligned_cols=79 Identities=9% Similarity=-0.078 Sum_probs=60.6
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC---CCCCChhHHHHHHHHHhhcCch
Q 015246 41 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG---DLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 778888888887765556666666666665 67899999999887764 3367899999999999999999
Q ss_pred HHHH
Q 015246 118 DNAL 121 (410)
Q Consensus 118 ~~a~ 121 (410)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.37 E-value=5.3 Score=32.63 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
++......|..+|.+.+|.++.++.+..+ +.+...+..++..+...||--.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455677888999999999999988775 6677888888888999999888888777764
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=10 Score=35.84 Aligned_cols=308 Identities=10% Similarity=0.008 Sum_probs=142.2
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHH
Q 015246 42 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121 (410)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (410)
.+.|++..+.++...+....+ .....|..+... .....+++....+++-. +.+.....-...+..+.+.+++....
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHHH
Confidence 456777777776666542211 111122222111 11223444444444322 11222333334444555666766665
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH--HHHHHHHHHH
Q 015246 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL--GLEILSAMKR 199 (410)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~ 199 (410)
..+. . .+.+...-.....+....|+.++|....+.+-..|. ..+.....++..+.+.|.... ..+-+..+..
T Consensus 120 ~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~ 193 (644)
T PRK11619 120 AFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMK 193 (644)
T ss_pred HhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5221 1 233555555666777778887777666666544432 234455566666655544322 2222222222
Q ss_pred cCCCCChhhHHHHHHHH-----------H-HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHHHH
Q 015246 200 KGYTFDGFGYCTVIAAF-----------V-KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY--CKEGKLEAAYLLLD 265 (410)
Q Consensus 200 ~~~~~~~~~~~~l~~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~ 265 (410)
.+ +......+...+ . -..+...+...+.. ++|+...-..++.++ ....+.+.|...+.
T Consensus 194 ~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~ 265 (644)
T PRK11619 194 AG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIP 265 (644)
T ss_pred CC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 22 111111111111 0 00111111111111 112221111111122 23445677888887
Q ss_pred HHHhCC-CCCch--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 266 EMEKQG-FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 266 ~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
...... ..+.. .+...+.......+...++...+...... ..+......-+....+.++++.+...+..|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~ 343 (644)
T PRK11619 266 SLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK 343 (644)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc
Confidence 764432 22221 22333333333332245666666654432 224444555555555788888888888777554
Q ss_pred -CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 341 -DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 341 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
...-..-+.+++...|+.++|...|+++.
T Consensus 344 ~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 344 EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33445556677677888888888888874
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.14 E-value=6.2 Score=32.96 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhhCCC---CCcHHHHHHHHHHHHhccc--
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCK--AG----RLRTARWILKELGDSGH---APNAITYTTIMKCCFRNRK-- 186 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 186 (410)
++.+.+++.+.+.|+.-+..+|-+..-.... .. ....+..+|+.|++..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455566666666666555444332222221 11 23456666766666421 1233344444332 2222
Q ss_pred --hhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015246 187 --YKLGLEILSAMKRKGYTFDGF--GYCTVIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLI 248 (410)
Q Consensus 187 --~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (410)
.+.++.+|+.+.+.|+..+.. ..+.++........ ..++.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 244555566666655544322 22222222211111 345666666666666666555555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.93 E-value=10 Score=35.10 Aligned_cols=178 Identities=14% Similarity=0.065 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCChhhHHHHHHHHHH-------cCCCCChHhHHHHHHHHHhc
Q 015246 12 FDAGYTILNRMREAGISPDVVTYNSLIAG-----ATRNSLLSCSLDLLDEMLE-------MGIPPDVWSYNSLMHCLFQL 79 (410)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 79 (410)
...|.+.++.....| +......+..+ +....+.+.|...|+...+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777765 22222222222 3345678888888877766 33 233455566666653
Q ss_pred C-----ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh-cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 015246 80 G-----KPDEANRVFQDMICGDLTPCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC----KA 149 (410)
Q Consensus 80 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 149 (410)
. +.+.|..++......| .|+.......+..... ..+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 4566777777777666 4554444333332222 24566777777777776643 22222222222 23
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 201 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (410)
.+...|..++++..+.|. |....-...+..+.. +.++.+.-.+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 456677777777766652 221111112222222 55555555555555444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.15 Score=37.18 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=45.0
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
+|+.+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. +..-...+++.|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566666667777777777765554455666666777777666656666555511 11122334444555555
Q ss_pred hhHHHHHHHH
Q 015246 82 PDEANRVFQD 91 (410)
Q Consensus 82 ~~~a~~~~~~ 91 (410)
++.+.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.61 E-value=4.2 Score=29.95 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=6.1
Q ss_pred hcCChhHHHHHHHHH
Q 015246 78 QLGKPDEANRVFQDM 92 (410)
Q Consensus 78 ~~~~~~~a~~~~~~~ 92 (410)
..|+|.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.8 Score=33.16 Aligned_cols=79 Identities=11% Similarity=-0.014 Sum_probs=59.5
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 015246 76 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFVPELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 152 (410)
..+.|+ +.|.+.|-.+...+.-.++.....|... ....+.+++..++-...+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATY-YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 6788888888877744555555555544 4578899999999988763 3367899999999999999999
Q ss_pred HHHH
Q 015246 153 RTAR 156 (410)
Q Consensus 153 ~~a~ 156 (410)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9874
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.56 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=18.2
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 378 SAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777766643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.44 E-value=6.9 Score=35.54 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=51.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 015246 146 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (410)
..+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|...... ..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHH
Confidence 34556666665555433 23444666666666666666666666554422 2344445555555544
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
..+-....+.|.. |....+|...|+++++.+++.+
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 4444444444322 2222345556666666655544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.21 Score=36.47 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=42.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 015246 247 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 326 (410)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (410)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 344455556666666666666655444456666666666666665565555554111 1112234455555555
Q ss_pred hHHHHHHHHh
Q 015246 327 IDHAINVFES 336 (410)
Q Consensus 327 ~~~A~~~~~~ 336 (410)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.91 E-value=5.5 Score=36.10 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=89.9
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
.-.|+++.|..++..+. ....+.++..+.+.|-.++|+++- +|.... .....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHH
Confidence 34566666666544332 223344556666667666665542 222211 23345667777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
++..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|
T Consensus 658 ~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 665543 2556677888888888888888877766543 3455566677777766666666666665
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 272 FECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
.. +. ...++...|+++++.+++..-
T Consensus 723 ~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 32 22 233556678888877776544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.80 E-value=15 Score=34.67 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHHc-
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKI- 219 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~- 219 (410)
....+.-.|+++.|.+.+-. ......+..++...+..|.-.+-.+... ..+.... -.|...-+..++..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34566778999999998876 2223345566555554432222222111 2222211 011124466777777753
Q ss_pred --CCHHHHHHHHHHHHHc
Q 015246 220 --GRLKEATDYMEQMVTD 235 (410)
Q Consensus 220 --~~~~~a~~~~~~~~~~ 235 (410)
.+...|.+.+--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 4677777777665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.75 E-value=5.3 Score=29.48 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHccCChHHHHHHHHhhccC
Q 015246 320 RLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+...|++.+|.++|+++...
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhcc
Confidence 334444555555555544443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.71 E-value=12 Score=33.44 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=72.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 015246 204 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 283 (410)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 283 (410)
.|.....+++..+..+..+.-++.+..++...| .+-..+..++++|... ..+.-..+|+++.+..+. |...-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344444455555555555555555555555532 2444555555555555 344455555555554322 222223333
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHhhccC-----CchhHHHHHHHHH
Q 015246 284 DGLCKAGNIKGARLHLEYMNKIGFDS-----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLC 353 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~ 353 (410)
.-|.+ ++.+.+..+|.++...=++. -.+.|..+...- ..+.+....+...+... -...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33332 55555555555554331110 012222222211 23344444444444433 1222333334455
Q ss_pred hcCChhhHHHHHHHHHHcC
Q 015246 354 KAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~ 372 (410)
...++++|++++...++.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5666666666666555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.69 E-value=6.3 Score=30.26 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=45.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCc----HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 015246 146 LCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 221 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (410)
+.+.|++++|..-|...+..-.... ...|..-..++.+.+.++.|+.-..+.++.+ +.....+..-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 4556666666666666555322111 2223333345555666666666665555554 2223333333445555566
Q ss_pred HHHHHHHHHHHHHc
Q 015246 222 LKEATDYMEQMVTD 235 (410)
Q Consensus 222 ~~~a~~~~~~~~~~ 235 (410)
++.|+.-|.++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666553
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.43 Score=22.59 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 015246 381 KAVVDGLRHSGCRREAKKIQS 401 (410)
Q Consensus 381 ~~l~~~~~~~g~~~~a~~~~~ 401 (410)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445556666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.55 E-value=9.3 Score=31.96 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHH--c----CCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCC--
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVK--I----GRLKEATDYMEQMVTDGVQ---LDIVSYNTLINLYCKEGK-- 256 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-- 256 (410)
+..+.+++.+.+.|+..+..+|.+....... . .....+..+++.|.+..+- ++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666665554443322222 1 1245666777777765332 222333333322 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 257 --LEAAYLLLDEMEKQGFECDK--YTHTILIDGLCKAGN--IKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 257 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 24455666666665554332 223333322222211 3356677777777777766655554433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.64 Score=22.61 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
|..+...+...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.47 Score=23.75 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+..++.++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666777788888888888887765
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.15 E-value=31 Score=37.38 Aligned_cols=312 Identities=13% Similarity=0.040 Sum_probs=161.8
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGIS--PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+=.++|.+.+|+-.++.-.....+ ....-+-.+...|...++++....+...-.. +.. +..-+-.....|++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHhhccH
Confidence 445778888888888884111101 1122333444488888888888877764221 222 23344456678999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL-IKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 161 (410)
..|...|+.+.+.+ ++....++.++......|.+.......+-.... ..+....++.+ +.+.-+.++++.....+.
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999998876 566778888888888888888777766665544 22233333333 344456666776666554
Q ss_pred HhhCCCCCcHHHHHHH--HHHHHhc--cchhHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHHcCCHHHHHHH
Q 015246 162 LGDSGHAPNAITYTTI--MKCCFRN--RKYKLGLEILSAMKRKGYTF---------DGFGYCTVIAAFVKIGRLKEATDY 228 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~ 228 (410)
. .+..+|... .....+. .|.-.-.+..+.+.+.-+.| =...|..++....-. +-...
T Consensus 1543 --~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~ 1612 (2382)
T KOG0890|consen 1543 --D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENS 1612 (2382)
T ss_pred --c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHH
Confidence 1 122223222 2222221 12111112222222211000 011233333222211 11111
Q ss_pred HHHHHHcCCCCC------hhhHHHHH---HHHHhcCCHHHHHH-HHHHHHhC-CCC-CchHHHHHHHHHHHhcCChhHHH
Q 015246 229 MEQMVTDGVQLD------IVSYNTLI---NLYCKEGKLEAAYL-LLDEMEKQ-GFE-CDKYTHTILIDGLCKAGNIKGAR 296 (410)
Q Consensus 229 ~~~~~~~~~~~~------~~~~~~l~---~~~~~~~~~~~a~~-~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~ 296 (410)
.+.... ..++ ..-|..-+ +.+.+...+--|.+ .+...... +.. --..+|....+.....|.++.|.
T Consensus 1613 ~~~l~~--~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1613 IEELKK--VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHhhc--cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111 1111 11121111 11222111111111 11111111 111 12457888888888899999998
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 297 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..+-...+.+ -+..+...+..+...|+...|+.++++..+.
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8877777754 2356677788899999999999999987643
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.13 E-value=13 Score=32.99 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=64.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCch--
Q 015246 214 AAFVKIGRLKEATDYMEQMVTD---GVQLD-----IVSYNTLINLYCKEGKLEAAYLLLDEMEK-------QGFECDK-- 276 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 276 (410)
..+.-.|++.+|.+++...--. |...+ -..||.+...+.+.|.+..+..+|....+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455678888888777543221 21111 12235555556666777766666666543 3444332
Q ss_pred ---------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 277 ---------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 277 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
.+|+ ..-.|...|++-.|.+.|.+..+. +..++..|-.+..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1233 344567788888888888887765 5667788888887774
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.98 E-value=2.2 Score=33.05 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=42.0
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCChHhHHHHHHH
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG--IPPDVWSYNSLMHC 75 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 75 (410)
+..+.+.+++++|+...+.-.+.. +.+...-..+++.++-.|+|++|..-++-.-... ..+....|..++++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345666677777777766666553 3455566666777777777777766665554432 12233455555554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.1 Score=35.63 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=52.4
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
.|.++|++++|++.|....... +-++.++..-..+|.+..++..|..-.+.....+- .-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 4677788888888777766553 23677777777777777777766665555544210 012234444444444556666
Q ss_pred HHHHHHHHhcC
Q 015246 85 ANRVFQDMICG 95 (410)
Q Consensus 85 a~~~~~~~~~~ 95 (410)
|.+-++..+..
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 66666655544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.73 E-value=12 Score=32.16 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=43.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL---DIVSYNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
...++..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777788888888888877777643211 334444455666677777788777777765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.71 E-value=2.7 Score=34.63 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC----Cch
Q 015246 271 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG---FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSF 343 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 343 (410)
|......+...++..-....+++++...+-++.... ..|+. +-...++.+.+ -++++++.++..-..- |..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 334444455555555555566667766666655421 01111 11122222222 2445555554433332 666
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++..+++.+.+.+++.+|.++.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666777777777776666666655543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.66 E-value=11 Score=31.34 Aligned_cols=233 Identities=13% Similarity=-0.037 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch----hHHHHHHHHHHHcCCCCChhhHH
Q 015246 135 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY----KLGLEILSAMKRKGYTFDGFGYC 210 (410)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 210 (410)
|.......+.++...|..+ +...+..+... ++...-...+.++...|+. +++...+..+... .++..+..
T Consensus 36 d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 4444444455555554322 22222233221 3444444444555555542 3445555544333 34444444
Q ss_pred HHHHHHHHcCCH-----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 015246 211 TVIAAFVKIGRL-----KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 285 (410)
Q Consensus 211 ~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (410)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443311 222333333322 2355555666667776665 3455555555542 344455555555
Q ss_pred HHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHH
Q 015246 286 LCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 286 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
+...+ ....+...+..+.. .++..+-...+.++.+.|+. .|...+-.....+. .....+.++...|.. +|+..
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHH
Confidence 55542 23455555555553 35666667777777777774 44444444443322 344566777777774 68888
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 365 LLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
+.++.+. .||..+-.....+|.
T Consensus 257 L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhh--CCChhHHHHHHHHHh
Confidence 8888754 446666655555553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.48 E-value=13 Score=32.04 Aligned_cols=192 Identities=10% Similarity=0.013 Sum_probs=86.1
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CcHHHHHHHHHHHH
Q 015246 107 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA----PNAITYTTIMKCCF 182 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 182 (410)
...+.-+.|+++...+........ .++...+..+... ..++++++...++.....-.. .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 345667788888855555544432 2244445544433 778888888888776552100 11122222222222
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH-----cCCHHH---HHHHHHHHHHc--CCCCChhhHHHHHHHHH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-----IGRLKE---ATDYMEQMVTD--GVQLDIVSYNTLINLYC 252 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~---a~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 252 (410)
+.....+..++.+-..... .+......++..+.. ..+++. ...+-..+... .......+|..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 2223333333333221111 112222222222221 111111 11111111110 01223345556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 253 KEGKLEAAYLLLDEMEKQGFEC---DKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
+.|.++.|...+..+...+... .+.....-++..-..|+..+|...++...+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777766666665543111 233344445555566666666666666555
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.2 Score=23.75 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLE 59 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 59 (410)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555566666666666666555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.35 E-value=1.1 Score=22.63 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+|..+...+...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888888754
|
... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=89.33 E-value=9.3 Score=31.10 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV----- 217 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 217 (410)
|.++...+++.++....-+.-+..-+..+.....-|-.|.+.+.+..+.++-+......-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455556666666655544443322222334444455556666666666666666554422223333554444443
Q ss_pred HcCCHHHHHHHH
Q 015246 218 KIGRLKEATDYM 229 (410)
Q Consensus 218 ~~~~~~~a~~~~ 229 (410)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.63 E-value=12 Score=30.36 Aligned_cols=201 Identities=13% Similarity=0.045 Sum_probs=111.2
Q ss_pred CCCCChhHHHHHHHH-HhhcCchHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCC
Q 015246 96 DLTPCTATFNIMLNG-LCKNRYTDNALRMFRGLQKHGFVPELV---TYNILIKGLCKAGRLRTARWILKELGD---SGHA 168 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~ 168 (410)
+-.||+..-|..-.+ -.+..++++|+.-|.+..+........ ....++..+.+.+++++....+.++.. +.+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 335666544433222 123457888888888887753332333 334567778888888888888887743 1111
Q ss_pred --CcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----
Q 015246 169 --PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-----GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV---- 237 (410)
Q Consensus 169 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 237 (410)
-+..+.+.++.....+.+.+...++++.-.+. +-..--.+-..+...|...+.+.+..+++.++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23455666666666666666655555543321 1011112334566677777777777777777765411
Q ss_pred CCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHH-----HhcCChhHHHH
Q 015246 238 QLD-------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGL-----CKAGNIKGARL 297 (410)
Q Consensus 238 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~ 297 (410)
..| ...|..-++.|....+-.....++++..... ..|.+.. ..+++-| .+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHh
Confidence 001 2355566667777777777777777654322 2333332 3344443 34566666644
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.46 E-value=7.8 Score=28.17 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=9.0
Q ss_pred HHhcCChhHHHHHHHHHhc
Q 015246 76 LFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~ 94 (410)
+...|+|.+|..+|+++..
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3344445555555544443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.4 Score=24.21 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=18.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 347 SMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 347 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
.+..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 45667777777777777777777544
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.18 E-value=43 Score=36.42 Aligned_cols=321 Identities=12% Similarity=0.041 Sum_probs=162.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGI--PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
.+..+-.+.+.+.+|.-.++.-..... .....-+..+...|...++++...-+...-.. .|+ .+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 344455667888888888887311100 01123344444588888888888777664211 222 222 3344556
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHH-HHHHHhccchhHHHH
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI-MKCCFRNRKYKLGLE 192 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 192 (410)
.|++..|...|+.+.+.+. +....++-++......|.++.++...+-.... ..+....++.+ ..+.-+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 7899999999999988732 34677787787777788888877766655443 22333333332 234456677777666
Q ss_pred HHHHHHHcCCCCChhhHHH--HHHHHHHc--CCHHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhcCCHHH
Q 015246 193 ILSAMKRKGYTFDGFGYCT--VIAAFVKI--GRLKEATDYMEQMVTDGVQL---------DIVSYNTLINLYCKEGKLEA 259 (410)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 259 (410)
... .. +..+|.. +.....+. .|.-.-.+.++.+.+.-+.| -...|..++....-..-...
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 554 11 1112221 22222222 12211112232222211110 01223333332221111000
Q ss_pred HHHHHHHHH-hCCCCCchHHHHHHHHHHHhcCChhHHHHHHHH-HHhcCCC-----CCHHHHHHHHHHHHccCChHHHHH
Q 015246 260 AYLLLDEME-KQGFECDKYTHTILIDGLCKAGNIKGARLHLEY-MNKIGFD-----SNLEAYNCIVDRLGKDGKIDHAIN 332 (410)
Q Consensus 260 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 332 (410)
. +.+.... ......+...|..-+..-....+..+-+-.+++ +...... -....|....+...+.|.++.|..
T Consensus 1613 ~-~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1613 I-EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred H-HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 0 0000000 000011111111111111111111111111222 1111112 225677788888888999999987
Q ss_pred HHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 333 VFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 333 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
.+-...+. -+..+-..+..+-..|+...|+.++++-++..
T Consensus 1692 all~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 76666555 67778888888899999999999999988653
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=88.04 E-value=26 Score=33.75 Aligned_cols=223 Identities=13% Similarity=0.018 Sum_probs=119.6
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChh-------hHHHH-HHHHHHcCCHHHHHHHHHHHHHc----CCCCChhhHHHH
Q 015246 180 CCFRNRKYKLGLEILSAMKRKGYTFDGF-------GYCTV-IAAFVKIGRLKEATDYMEQMVTD----GVQLDIVSYNTL 247 (410)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 247 (410)
......++++|..++.++...-..|+.. .++.+ .......|+++.+.++.+..... ...+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3455688999999988877553232221 12222 12334568999999988887764 122344556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchH---HHHHH--HHHHHhcCCh--hHHHHHHHHHHhc--CCCC----CHHHH
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQGFECDKY---THTIL--IDGLCKAGNI--KGARLHLEYMNKI--GFDS----NLEAY 314 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~~--~~a~~~~~~~~~~--~~~~----~~~~~ 314 (410)
..+..-.|++++|..+..+..+..-.-+.. .+..+ ...+...|.. .+....+...... +-.| -.-+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777788899999999888776542222322 22222 2234556632 2233333333221 0011 12233
Q ss_pred HHHHHHHHcc-CChHHHHHHHHhhccC---Cc---hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCcHhhHHHH
Q 015246 315 NCIVDRLGKD-GKIDHAINVFESMEVK---DS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV----RILKSAQKAV 383 (410)
Q Consensus 315 ~~l~~~~~~~-g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l 383 (410)
..+..++.+. +...++..-++-.... .. ..+..++......|+.++|...++++..... .++..+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444555441 1122222222211111 11 1223567778889999999999988875432 2333333333
Q ss_pred HHH--HhhcCCHHHHHHHHHH
Q 015246 384 VDG--LRHSGCRREAKKIQSK 402 (410)
Q Consensus 384 ~~~--~~~~g~~~~a~~~~~~ 402 (410)
+.. ....|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 333 3568888888777655
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.8 Score=24.98 Aligned_cols=38 Identities=8% Similarity=-0.042 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
...+..++.+.|++++|.+..+.+++. .|+..-...|-
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 345667788889999999998888865 56655444443
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.97 E-value=2.4 Score=29.49 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 360 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 360 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+..+-+..+...++-|++......+++|.+.+|+.-|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555555566677777777777777777777777777666543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.89 E-value=14 Score=30.40 Aligned_cols=63 Identities=5% Similarity=-0.030 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHhccchhHHHHHHH
Q 015246 133 VPELVTYNILIKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILS 195 (410)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (410)
.++..+....++.++..+++..-.++++..... +...|...|..++......|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 345555555556666666666666665555443 334455556666666666666554444444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.76 E-value=8.7 Score=28.98 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 358 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
+++|.+.|+++... .|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34455555555533 56666666655554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.70 E-value=8.8 Score=27.91 Aligned_cols=51 Identities=16% Similarity=-0.032 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 253 KEGKLEAAYLLLDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..++++++..++..+.-. .|+.. .-..-...+...|++.+|.++|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 355666666666665543 22211 1111223345566666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.64 E-value=1.9 Score=23.72 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 015246 142 LIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555555555554443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=87.41 E-value=10 Score=30.83 Aligned_cols=89 Identities=6% Similarity=-0.089 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH----
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL---- 111 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 111 (410)
.=|++++..++|.+++...-+.-+..-+..+.+...-|-.|.+.+++..+.++-.......-..+...|..++..|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3478888888888887766554432111224455566667888888888888877776542233334465555444
Q ss_pred -hhcCchHHHHHHH
Q 015246 112 -CKNRYTDNALRMF 124 (410)
Q Consensus 112 -~~~~~~~~a~~~~ 124 (410)
.-.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 4478888888877
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.51 E-value=6.8 Score=27.37 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
-++.+....+.|++......+++|.+.+++..|.++|+-+.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555554444
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.50 E-value=34 Score=33.44 Aligned_cols=115 Identities=14% Similarity=0.186 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCC---CCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCChhhHH---
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGY---TFDGFGYCTVIAAFVKIGRL--KEATDYMEQMVTDGVQLDIVSYN--- 245 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~--- 245 (410)
|..|+..|...|+.++|++++.+..+..- ..-...+...+..+.+.+.. +-+++.-....+.........+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 66677777777777777777777665320 11111222334444444433 34444333333322111111111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 015246 246 ---------TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 288 (410)
Q Consensus 246 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (410)
..+-.|......+.+..+++.+....-.++...++.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122345556667777777777665545566666666666543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.27 E-value=17 Score=29.87 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=39.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCChhHHHHHHHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIKGARLHLEY 301 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 301 (410)
..++..+...++..++..+++..-.+++...... +...|...|..++......|+..-...+.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3455566666666667777777666666665544 3444666666666666666666555555443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.21 E-value=8.4 Score=30.08 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=22.6
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHH
Q 015246 74 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL 127 (410)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (410)
+.+.+.+..++++....+-.+.. +.+...-..+++.++-.|++++|..-++-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444444444444444333332 333334444444444444444444444433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.14 E-value=17 Score=29.52 Aligned_cols=207 Identities=15% Similarity=0.075 Sum_probs=131.3
Q ss_pred CCCCChHhHHHHHHHH-HhcCChhHHHHHHHHHhcCCCCCChh---HHHHHHHHHhhcCchHHHHHHHHHHHhC---CC-
Q 015246 61 GIPPDVWSYNSLMHCL-FQLGKPDEANRVFQDMICGDLTPCTA---TFNIMLNGLCKNRYTDNALRMFRGLQKH---GF- 132 (410)
Q Consensus 61 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 132 (410)
+..||+..=|..-..- .+..++++|+.-|+.+.+..-..... +...++....+.+++++.+..+.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456665444322221 24457999999999988763233333 3445788899999999999999988642 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC----
Q 015246 133 -VPELVTYNILIKGLCKAGRLRTARWILKELGDS-----GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY---- 202 (410)
Q Consensus 133 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 202 (410)
.-+..+.|.++.......+.+--...++.-.+. +-..=-.|-..+...|...+.+.+..+++.++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 124567788888888788877777777654331 1111112334577788889999999999998875411
Q ss_pred CCC-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHH
Q 015246 203 TFD-------GFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLIN----LYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 203 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~ 267 (410)
..| ...|..-+..|....+-.....++++.... ..-|.+.....+-. ...+.|++++|..-|-+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 111 235666778888888888888888887653 22345544443322 245678888876544333
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.08 E-value=24 Score=31.40 Aligned_cols=43 Identities=5% Similarity=-0.196 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 389 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (410)
......|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 34455677788888888888777755 56677788888777754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.01 E-value=31 Score=32.59 Aligned_cols=396 Identities=14% Similarity=0.107 Sum_probs=196.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChhhHHHHHHHHHHcC----CCCChHhHHHH-HHHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVV-----TYNSLIAGATRNSLLSCSLDLLDEMLEMG----IPPDVWSYNSL-MHCLF 77 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~ 77 (410)
...+++.|...+++....--.++.. ....++..+.+.+... |...+++..+.- ..+-...|..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 5678999999999876543222222 2234566666666555 888888876541 11222333333 33333
Q ss_pred hcCChhHHHHHHHHHhcCC---CCCChhHHHHHHHHHh--hcCchHHHHHHHHHHHhCC---------CCCCHHHHHHHH
Q 015246 78 QLGKPDEANRVFQDMICGD---LTPCTATFNIMLNGLC--KNRYTDNALRMFRGLQKHG---------FVPELVTYNILI 143 (410)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~ 143 (410)
..+++..|.+.++.+.... ..|-..++..++.+.. ..+..+++.+.++.+.... ..|...+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3479999999998876542 2444455555555544 3455667777777663321 233556666666
Q ss_pred HHH--HhcCCHHHHHHHHHHHhh-------CC----------CC-------------CcH---------HHHHHHHH--H
Q 015246 144 KGL--CKAGRLRTARWILKELGD-------SG----------HA-------------PNA---------ITYTTIMK--C 180 (410)
Q Consensus 144 ~~~--~~~~~~~~a~~~~~~~~~-------~~----------~~-------------~~~---------~~~~~l~~--~ 180 (410)
+.+ ...|+++.+...++.+.+ .. ++ +.. ....-++. .
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 655 456777777766665522 10 00 000 01111111 2
Q ss_pred HHhccchhHHHHHHHH-------HH-HcCCCCCh--------hhHHHH---------HHHHHHcCCHHHHHHHHHHHHHc
Q 015246 181 CFRNRKYKLGLEILSA-------MK-RKGYTFDG--------FGYCTV---------IAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 181 ~~~~~~~~~a~~~~~~-------~~-~~~~~~~~--------~~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
....+..+++.+++++ .. .....+.. ..+... +....-.+++..|...++.+...
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2333444455555444 44 11111111 111111 11223568899999999988764
Q ss_pred CC-CCC-----hhhHHHHHH--HHHhcCCHHHHHHHHH--------HHHhCCCCCchHHHHHH--HHHHHhcC--ChhH-
Q 015246 236 GV-QLD-----IVSYNTLIN--LYCKEGKLEAAYLLLD--------EMEKQGFECDKYTHTIL--IDGLCKAG--NIKG- 294 (410)
Q Consensus 236 ~~-~~~-----~~~~~~l~~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~- 294 (410)
.. .|+ ...+..++. .+...|+.+.|...|. .....+...+..++..+ +..+...+ ...+
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 21 111 122222332 3446799999999998 34444444344333332 11222222 2223
Q ss_pred -HHHHHHHHHhc-CCCC--CHHHHHHH-HHHHHccC--ChHHHHHHHHhhc-----cC-Cc----hhHHHHHHHHHhcCC
Q 015246 295 -ARLHLEYMNKI-GFDS--NLEAYNCI-VDRLGKDG--KIDHAINVFESME-----VK-DS----FTYSSMVHNLCKAKR 357 (410)
Q Consensus 295 -a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~-----~~-~~----~~~~~l~~~~~~~~~ 357 (410)
+..+++.+... .-.| +..++..+ +.++.... ...++...+.+.. .. +. .+++.+...+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 66666665432 1122 22233333 33332211 1223433333211 11 11 22333333333 788
Q ss_pred hhhHHHHHHHHHHcCCC-C--cHhhHH-----HHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 358 LPSASKLLLSCLKSGVR-I--LKSAQK-----AVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~-~--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
..+..+..........+ | ....|. .+...+...|+.++|.....+..+
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 87766665554432111 2 334443 233447789999999999887765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.12 E-value=20 Score=29.53 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 209 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
+......|..+|.+.+|.++.+..... -+.+...+-.++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344556667777777777777776665 2335566666777777777766666666555
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.81 E-value=13 Score=29.70 Aligned_cols=96 Identities=11% Similarity=-0.073 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh------cCCCCCHH-----------HHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNK------IGFDSNLE-----------AYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
..+...-..-+.+.|++.+|...|++.+. ..-+|... .+..+.+++...|++-++++.-.++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555556667888999999999988642 11233222 22334456667788888888777776
Q ss_pred cC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 339 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 339 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.. +..+|..-..+.+..=+.++|..-|...++.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 66 5556666666666666778888888888765
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=83.84 E-value=38 Score=31.70 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=0.0
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
.+.|++.+|.+.+-.+++.+..|...-...+
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 3457888888888887776666654433333
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.78 E-value=41 Score=32.01 Aligned_cols=150 Identities=10% Similarity=0.067 Sum_probs=78.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 73 MHCLFQLGKPDEANRVFQDMICGDLTP---CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
++.+.+.+.+++|+++.+..... .| -...+..++..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45666677777777776654432 33 3445666777777778888877777777654 555555555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHH-----------------HcCCCCChhhHHHH
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-----------------RKGYTFDGFGYCTV 212 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~~~~l 212 (410)
++......++ .......+...|..++..+.. .+...-.+...... +.+ .-+......|
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVL 511 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHH
Confidence 5544332222 221112344455555544443 22111111111100 000 1122233446
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 015246 213 IAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~ 233 (410)
+..|...++++.|..++-...
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHccChHHHHHHHHhcc
Confidence 777777788888877766554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.61 E-value=41 Score=31.97 Aligned_cols=102 Identities=9% Similarity=0.025 Sum_probs=68.4
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISP---DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL 79 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (410)
|+.+.+.+.+++|++..+..... .| ........|..+...|++++|-...-.|... +...|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45677888889998887665543 33 3456778888889999999999888888753 566666666666666
Q ss_pred CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 80 GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655443332 2322223456677777777766
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.25 E-value=8.9 Score=27.31 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC-----CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 308 DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.++..+-..+..++.+..+ ..+.+.+++.+.+. .......|.-++.+.++++.+.++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5666677777788877665 44566777777652 3445566677888999999999999998865
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.89 E-value=26 Score=29.12 Aligned_cols=136 Identities=11% Similarity=-0.009 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLI 248 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (410)
+..+-...+.++.+.++ +.++..+-.+.+. ++...-...+.++.+.+ +...+...+..+... ++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44444444455555444 2344444444432 23333333333443332 123444444444432 3455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 249 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
.++.+.++. .+...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.++
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 666666653 3444444443332 1 223455566666664 456666665542 33555544444444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=82.27 E-value=47 Score=31.61 Aligned_cols=73 Identities=8% Similarity=-0.100 Sum_probs=37.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015246 72 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 150 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (410)
.+..+.+.+++......+.. . +.+...-.....+....|+.++|....+.+-..|.. .+...+.++..+.+.|
T Consensus 105 ~l~~La~~~~w~~~~~~~~~----~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE----K-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcC
Confidence 34445556666655552211 1 344444445566666677766666666555444322 3444455555554433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.16 E-value=7.1 Score=35.37 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=56.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHH
Q 015246 288 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
..|+...|...+.........-.......+.+...+.|....|-.++.+.... .+-++..+.+++....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34666777777666554321112223444556666666666777766655443 556667777777777788888888
Q ss_pred HHHHHHcCCCCcHhhHHHHH
Q 015246 365 LLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~ 384 (410)
|+++++.. +.+...-+.+.
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHHhcC-CCChhhHHHHH
Confidence 87777653 33444444443
|
|
| >COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.94 E-value=15 Score=26.83 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 17 TILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
++.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4556667777665553 345677777777778899999999888776666666666666666663
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.94 E-value=29 Score=28.99 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=38.8
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----E 254 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 254 (410)
..+++..+...+......+. ......+...|.. ..+..+|..++....+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 34566666666666665331 1222233333322 22455666666655544322 222223333332 2
Q ss_pred CCHHHHHHHHHHHHhCC
Q 015246 255 GKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 255 ~~~~~a~~~~~~~~~~~ 271 (410)
.+..+|...+....+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 35556666666665555
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=80.82 E-value=16 Score=28.89 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=13.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 383 VVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 383 l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
++....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334445566666666666555443
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.17 E-value=7.3 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=24.8
Q ss_pred hcCChhhHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPD--VWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
..++.++|+..|....+.-..+. ..++..++.+++..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655422211 23455566666666666665544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.6 bits (202), Expect = 6e-17
Identities = 32/261 (12%), Positives = 76/261 (29%), Gaps = 33/261 (12%)
Query: 17 TILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL 76
+ + R+A SP L+ A L + + + + C
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 77 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL 136
+ A+ + L + G ++ + L
Sbjct: 138 LLTDQLPLAHHL--------------------------------LVVHHGQRQKRKLLTL 165
Query: 137 VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILS 195
YN ++ G + G + ++L + D+G P+ ++Y ++C R ++ L
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 196 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 255
M ++G +++ + LK V+ + L+ +
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 256 KLEAAYLLLDEMEKQGFECDK 276
+ L ++ +K
Sbjct: 286 GRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.2 bits (188), Expect = 3e-15
Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 11/254 (4%)
Query: 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRL---RTARWILKELGDSGHAPNAITYTTIM 178
RM R K + + L + L RL + A + + +P ++
Sbjct: 40 RMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLL 99
Query: 179 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA---TDYMEQMVTD 235
+ + + + + +L A
Sbjct: 100 QEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK 159
Query: 236 GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 295
L + YN ++ + ++G + +L ++ G D ++ + + + G
Sbjct: 160 RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219
Query: 296 RLH-LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME----VKDSFTYSSMVH 350
LE M++ G ++ + + V + + S ++
Sbjct: 220 IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
Query: 351 NLCKAKRLPSASKL 364
++ S KL
Sbjct: 280 DVYAKDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.6 bits (171), Expect = 3e-13
Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 4/151 (2%)
Query: 2 LIDAYCQFVSFDAGYTILNRMRE---AGISPDVVTYNSLIAGATRNSLLSCSLDLLDEML 58
+ +L + YN+++ G R + +L +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 59 EMGIPPDVWSYNSLMHCLFQLGKPDEA-NRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117
+ G+ PD+ SY + + C+ + + R + M L ++L+ +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCK 148
++ +P V + L++ +
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.7 bits (135), Expect = 8e-09
Identities = 15/125 (12%), Positives = 46/125 (36%), Gaps = 1/125 (0%)
Query: 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR-NSLLSCSLDLLDEMLE 59
++ + + +F +L +++AG++PD+++Y + + R + L++M +
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
Query: 60 MGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 119
G+ L+ + ++V P + +L + +
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
Query: 120 ALRMF 124
++
Sbjct: 290 YPKLH 294
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 2e-09
Identities = 64/410 (15%), Positives = 116/410 (28%), Gaps = 132/410 (32%)
Query: 74 HCLFQLGKPDEANR----VFQDMICGDLTPCTATFNIMLNGLCKNRYTD---------NA 120
H F+ G+ + VF+D + C ++ + L K
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 121 LRMFRGLQKHG------FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY 174
LR+F L FV E++ N ++++ + P+ +T
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINY--------------KFLMSPIKTEQRQPSMMTR 110
Query: 175 TTIMKCCFRNR---------KY-----KLGLEILSAMKR----KGYTFDGFGYC--TVIA 214
I + R+R KY + L++ A+ K DG T +A
Sbjct: 111 MYIEQ---RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 215 A----------------F-VKIGRLKEATDYMEQMVTDGVQLD-----IVSYNTLINLYC 252
F + + +E + Q+D +++ I L
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 253 KEGKLEAAYLLLDEMEKQGFECDKYTHTILI-DGLCKAGNIKGARLHLEYMNKIGFDSNL 311
+ E LL + Y + +L+ + A F+
Sbjct: 228 HSIQAELRRLLKSK---------PYENCLLVLLNVQNAKAWN------------AFN--- 263
Query: 312 EAYNC----------IVDRLG----KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKR 357
+C + D L +DH EVK + C+ +
Sbjct: 264 --LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLD--CRPQD 317
Query: 358 LPSASK----LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403
LP LS + +R A D +H C + I+S +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRD----GLATWDNWKHVNCDKLTTIIESSL 363
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 5e-09
Identities = 59/370 (15%), Positives = 100/370 (27%), Gaps = 123/370 (33%)
Query: 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSL----MHCLFQLGKPDEANRVF---QDMICG 95
N LL +L +V + + + C ++ +
Sbjct: 244 ENCLL-----VLL---------NVQNAKAWNAFNLSC-----------KILLTTRFKQVT 278
Query: 96 DLTPCTATFNIMLNGLCKNRYTDNALRMFR---GLQKHGFVPELVTYNILIKGLCKAGRL 152
D T +I L+ D + + E++T N + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-SI 337
Query: 153 R--TARWI-LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209
R A W K + N TTI++ L +L + + F
Sbjct: 338 RDGLATWDNWKHV-------NCDKLTTIIESS---------LNVLEPAEYRKM----FDR 377
Query: 210 CTVIAAFVKI-----GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 264
+V I + + M +V N L Y L+
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVM-------VVV--NKLHK-----------YSLV 417
Query: 265 DEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD 324
EKQ E +I ++ K N LH I ++ YN D
Sbjct: 418 ---EKQPKESTISIPSIYLELKVKLENE--YALH----RSI-----VDHYNIPKTFDSDD 463
Query: 325 GKIDHAINVFESMEVKDSFTYSSMVHNLCKA---KRLPSASKLLLSCLKSGVRILKSAQK 381
+ D + YS + H+L +R+ + L R L+ QK
Sbjct: 464 LIPPYL----------DQYFYSHIGHHLKNIEHPERMTLFRMVFLD-----FRFLE--QK 506
Query: 382 AVVDGLRHSG 391
+RH
Sbjct: 507 -----IRHDS 511
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 64/374 (17%), Positives = 123/374 (32%), Gaps = 109/374 (29%)
Query: 4 DAYCQFV--SFDAGYT-ILNRMREAGISPDVVT--YNSLIAGATRNSLLSCSLDLLDEML 58
+ +FV Y +++ ++ P ++T Y R+ L + +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-----QRDRLYNDN-------- 123
Query: 59 EMGIPPDVWS---YNSLMHCLFQLGKPDEANRVFQDMI-CG-----------DLTPCTAT 103
++ +V Y L L +L +P N + ++ G C
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLEL-RP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 104 FNIM-LN-GLCKNRYTDNALRMFRGLQK--HGFVPELVTYNILIKGLCKAGRLRT--ARW 157
F I LN C + + L M LQK + P + + + +LR +
Sbjct: 182 FKIFWLNLKNCNS--PETVLEM---LQKLLYQIDPNWTSRSDHSSNI----KLRIHSIQA 232
Query: 158 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY-CTVIAAF 216
L+ L +++ Y+ L +L ++ ++ F C ++
Sbjct: 233 ELRRL-------------------LKSKPYENCLLVLLNVQNAK-AWNAFNLSCKILL-- 270
Query: 217 VKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-LEAAYLLLD------EMEK 269
R K+ TD++ T + LD + + L E K L YL E+
Sbjct: 271 --TTRFKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 270 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 329
T+ + +I + + + N + NC D+L I+
Sbjct: 325 --------TNPRRL-------SIIAESIR-DGLATW---DNWKHVNC--DKLTT--IIES 361
Query: 330 AINVFESMEVKDSF 343
++NV E E + F
Sbjct: 362 SLNVLEPAEYRKMF 375
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 28/208 (13%), Positives = 59/208 (28%), Gaps = 14/208 (6%)
Query: 59 EMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD 118
+ GI + L D A +++ + D A ++ N L
Sbjct: 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEW 252
Query: 119 NALRMFRGLQKHGFVPELVT--YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 176
+ + + Y + + LR A L + +G ++
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI--NGLEKSSDLLLC 310
Query: 177 IMKCCFRNRKYKLGLEILS-AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235
F ++ L I + ++ Y D Y +A+ + G + +
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLD--VYPLHLASLHESGEKNKLYLISNDL--- 365
Query: 236 GVQLD---IVSYNTLINLYCKEGKLEAA 260
V V++ + Y K+ A
Sbjct: 366 -VDRHPEKAVTWLAVGIYYLCVNKISEA 392
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 410 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.79 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.76 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.75 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.75 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.75 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.74 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.73 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.73 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.7 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.69 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.68 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.68 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.67 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.67 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.66 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.65 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.62 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.57 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.57 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.56 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.54 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.53 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.48 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.44 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.44 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.42 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.4 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.4 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.38 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.37 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.33 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.31 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.3 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.29 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.28 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.28 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.26 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.23 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.21 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.21 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.2 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.19 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.18 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.18 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.17 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.16 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.16 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.16 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.14 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.13 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.12 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.07 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.06 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.03 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.03 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.02 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.99 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.98 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.97 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.97 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.97 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.96 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.95 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.93 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.92 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.92 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.92 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.91 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.88 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.87 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.86 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.86 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.83 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.82 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.82 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.81 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.81 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.79 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.79 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.77 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.76 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.73 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.71 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.69 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.63 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.63 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.62 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.58 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.56 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.54 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.51 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.49 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.48 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.45 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.41 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.38 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.28 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.28 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.25 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.14 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.08 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.06 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.05 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.96 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.94 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.67 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.63 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.59 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.58 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.5 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.46 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.42 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.4 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.26 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.01 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.75 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.73 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.65 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.64 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.58 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.48 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.48 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.3 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.28 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.22 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.17 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.75 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.37 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.12 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.86 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.73 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.72 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.25 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 94.19 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.08 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.92 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.8 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.57 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.24 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.18 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.13 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.03 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 92.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.81 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.87 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.76 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.31 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.15 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.88 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.95 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.78 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.31 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.75 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.5 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.44 | |
| 3eiq_C | 358 | Programmed cell death protein 4; PDCD4, anti-oncog | 80.99 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.67 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=293.92 Aligned_cols=399 Identities=11% Similarity=-0.042 Sum_probs=299.4
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+.. .+++..+++.++.+|.+.|+
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhh
Confidence 567888899999999999999865 47778888899999999999999999988764 35678888999999999999
Q ss_pred hhHHHHHHHHHhcC---------------CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCC--------------
Q 015246 82 PDEANRVFQDMICG---------------DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-------------- 132 (410)
Q Consensus 82 ~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 132 (410)
+++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhc
Confidence 99999998853221 2234578888899999999999999988888865432
Q ss_pred --------------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHH
Q 015246 133 --------------------------------------------------------VPELVTYNILIKGLCKAGRLRTAR 156 (410)
Q Consensus 133 --------------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~ 156 (410)
+++..+++.++..|.+.|++++|.
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 144555566666666666666666
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 157 WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
++|+++.+.+. .+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+..
T Consensus 326 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 326 AITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 66666665432 245556666666666666666666666666543 4566677777788888888888888888877652
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 316 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 316 (410)
+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|..
T Consensus 404 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 480 (597)
T 2xpi_A 404 -PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNE 480 (597)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 2356678888888888888888888888887664 3466777888888888888888888888887753 446777888
Q ss_pred HHHHHHccCChHHHHHHHHhhccC--------C--chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK--------D--SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~--------~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
++.+|.+.|++++|.++|+++... + ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..++.+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 888888888888888888877432 1 4577888888888888888888888887765 5577788888888
Q ss_pred HhhcCCHHHHHHHHHHHHHccCCC
Q 015246 387 LRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
|.+.|++++|.+.++++.+.+|++
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCC
Confidence 888888888888888888777654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=279.45 Aligned_cols=391 Identities=11% Similarity=-0.031 Sum_probs=318.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANR 87 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 87 (410)
+.|.+..+...+..+. .++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|...|++++|.+
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3445555555544433 367889999999999999999999999999864 4688899999999999999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCH
Q 015246 88 VFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---------------GFVPELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~ 152 (410)
+|+.+... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99998643 788999999999999999999999999953322 2234688999999999999999
Q ss_pred HHHHHHHHHHhhCCC-----------------------------------------------------------------
Q 015246 153 RTARWILKELGDSGH----------------------------------------------------------------- 167 (410)
Q Consensus 153 ~~a~~~~~~~~~~~~----------------------------------------------------------------- 167 (410)
++|.+.|+++.+.+.
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998865332
Q ss_pred -----CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 015246 168 -----APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 242 (410)
Q Consensus 168 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (410)
+++..++..++.++.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+. .+.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHH
Confidence 1566777778888888888888888888888765 557777888888888888888888888888765 344678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
++..++..|.+.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 88889999999999999999999988764 3367789999999999999999999999998763 457788999999999
Q ss_pred ccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCc--HhhHHHHHHHHhhcCCH
Q 015246 323 KDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRIL--KSAQKAVVDGLRHSGCR 393 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~ 393 (410)
+.|++++|.++|+++... ++.+|..++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 999999999999988653 6788999999999999999999999999876 55676 67899999999999999
Q ss_pred HHHHHHHHHHHHccCCC
Q 015246 394 REAKKIQSKIRMAKISH 410 (410)
Q Consensus 394 ~~a~~~~~~~~~~~~~~ 410 (410)
++|.+.++++.+.++++
T Consensus 533 ~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTND 549 (597)
T ss_dssp HHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999998877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=235.12 Aligned_cols=381 Identities=12% Similarity=0.043 Sum_probs=331.9
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3567889999999999999998875 4566778888889999999999999999988864 4578899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+++|.+.|+++.... +.+..+|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998765 5567789999999999999999999999998864 33566788888999999999999999999
Q ss_pred HhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh
Q 015246 162 LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 241 (410)
+.... +.+..+|..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 98754 2367889999999999999999999999999886 5667788999999999999999999999998863 3367
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
.++..+..++...|++++|...++++.+.+ +.+..++..+...+...|++++|...++++.+. .+.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHH
Confidence 888999999999999999999999999874 335778999999999999999999999999986 366788999999999
Q ss_pred HccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 322 GKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
...|++++|...++++... +..++..++.++.+.|++++|...|+++++.. |.+...+..+...+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999998876 56688999999999999999999999999753 4467788888877766653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=229.60 Aligned_cols=365 Identities=12% Similarity=0.013 Sum_probs=320.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 116 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (410)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3566788999999999999998864 3356777888889999999999999999988765 7788999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHH
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (410)
+++|...|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998863 33667899999999999999999999999988542 3456677888899999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 015246 197 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 276 (410)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 276 (410)
+.+.. +.+..++..+...+...|++++|...|+++.+.++ .+...+..+...+...|++++|...+.+..... +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 99875 55678899999999999999999999999998743 367788899999999999999999999998774 3357
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
.++..+..++...|++++|...++++.+.+ +.+..++..+..++.+.|++++|...++++... +..++..++..+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 888999999999999999999999999863 445788999999999999999999999988765 6778999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
..|++++|...++++++.. +.+..++..++.++.+.|++++|.+.++++.+..|++
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999763 5568899999999999999999999999999887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=240.41 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---------hh
Q 015246 14 AGYTILNRMREAGISPDVV-TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK---------PD 83 (410)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 83 (410)
.+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4455556777776555443 5788899999999999999999999999999999999999999987664 57
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 164 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=237.76 Aligned_cols=207 Identities=12% Similarity=0.093 Sum_probs=181.2
Q ss_pred hhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc---------h
Q 015246 48 SCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY---------T 117 (410)
Q Consensus 48 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 117 (410)
..+..+.+.+.+.+..+.+ ..++.+|..|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455566777777665554 45888999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 197 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (410)
++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 015246 198 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 254 (410)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (410)
.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=219.15 Aligned_cols=397 Identities=12% Similarity=-0.019 Sum_probs=292.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
-..+.+.|++++|++.|+++.+.+ |+..+|..+..++...|++++|...++++.+.+ +.+..++..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 356888999999999999999985 799999999999999999999999999999875 34678899999999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC--------------------------------
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-------------------------------- 130 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 130 (410)
++|...|+++...+ +++......++..+........+.+.+..+...
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999998876 445444444444443333222222222111000
Q ss_pred ---CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----CCC--------CCcHHHHHHHHHHHH
Q 015246 131 ---GF---------VPELVTYNILIKGLCK---AGRLRTARWILKELGD-----SGH--------APNAITYTTIMKCCF 182 (410)
Q Consensus 131 ---~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~ 182 (410)
.. +.+...+......+.. .|++++|...++++.. ... +.+...+..+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00 1113344444444443 7888888888888776 311 123556677777888
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 262 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 262 (410)
..|++++|...++++.+.. |+...+..+..++...|++++|...++.+.... +.+...+..+..++...|++++|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 8888888888888888775 226777778888888888888888888887753 3356777788888888888888888
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 326 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 888887764 2356677778888888888888888888887752 345667778888888888888888888877554
Q ss_pred -C------chhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 341 -D------SFTYSSMVHNLCK---AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 341 -~------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+ ...+..++.++.. .|++++|...++++++.. +.+..++..++.++.+.|++++|...++++.+.+++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 2 2277888888888 888888888888888764 456777778888888888888888888888777664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-26 Score=200.60 Aligned_cols=373 Identities=12% Similarity=0.030 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 13 DAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDM 92 (410)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 92 (410)
..+...+..+.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33445555555543 5677789999999999999999999999998863 347888999999999999999999999999
Q ss_pred hcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHH
Q 015246 93 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL---VTYNIL------------IKGLCKAGRLRTARW 157 (410)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~ 157 (410)
.+.+ +.+..++..+..++...|++++|...|+++.+... .+. ..+..+ ...+...|++++|..
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876 66788999999999999999999999999988632 234 555554 445889999999999
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 015246 158 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 237 (410)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (410)
.|+++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998754 3477888999999999999999999999998875 6678889999999999999999999999998753
Q ss_pred CCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCc-----hHHHHHHHHHHHhcCChhHHHHHHH
Q 015246 238 QLDIVSYNTL------------INLYCKEGKLEAAYLLLDEMEKQGFECD-----KYTHTILIDGLCKAGNIKGARLHLE 300 (410)
Q Consensus 238 ~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (410)
+.+...+..+ ...+...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2244444444 788899999999999999998763 33 3467888899999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH------------HHhcC-----Chhh
Q 015246 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN------------LCKAK-----RLPS 360 (410)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~------------~~~~~-----~~~~ 360 (410)
++.+.. +.+...+..+..+|...|++++|...++++... +...+..+..+ |...| +.++
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 998763 456889999999999999999999999988766 45566666533 33334 5677
Q ss_pred HHHHHHH-HHHcCCCCc-----------HhhHHHHHHHHhhcCCHHHHH
Q 015246 361 ASKLLLS-CLKSGVRIL-----------KSAQKAVVDGLRHSGCRREAK 397 (410)
Q Consensus 361 A~~~~~~-~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~ 397 (410)
+.+.|++ .++. .|| ...+..+..+|...|+.+.+.
T Consensus 399 ~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 399 IIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 7888887 4433 232 226677777787777776544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-26 Score=205.89 Aligned_cols=394 Identities=11% Similarity=0.044 Sum_probs=294.8
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
-..+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|++.++++.+.+ +.+..++..+..++...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 356788999999999999999876 5678889999999999999999999999998875 34678888899999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC------CCCCHHH------------------
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG------FVPELVT------------------ 138 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~------------------ 138 (410)
++|.+.|+. .... |+. ....+..+...+....|...++.+.... ..|+...
T Consensus 110 ~~A~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSV-LSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHH-HhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 999999963 3322 221 1222344555566677777777775421 1122111
Q ss_pred ------------HHHHHHHHH--------hcCCHHHHHHHHHHHhhCCCCCc------HHHHHHHHHHHHhccchhHHHH
Q 015246 139 ------------YNILIKGLC--------KAGRLRTARWILKELGDSGHAPN------AITYTTIMKCCFRNRKYKLGLE 192 (410)
Q Consensus 139 ------------~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 192 (410)
...+...+. ..|++++|..+++++.+...... ..++..+...+...|++++|..
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 112222211 12478889999998887543211 2346666778888899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015246 193 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 272 (410)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (410)
.++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 999998874 457788888888999999999999999998864 3467888889999999999999999999998764
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C------ch
Q 015246 273 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D------SF 343 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~ 343 (410)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... + ..
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 3356788888999999999999999999998863 455778888999999999999999999987654 1 12
Q ss_pred hHHHHHHHHHhc----------CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 344 TYSSMVHNLCKA----------KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 344 ~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+.....++... |++++|...++++++.. +.+...+..++.+|.+.|++++|.+.++++.+..++
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 244556677777 99999999999998774 557788889999999999999999999998887664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-26 Score=200.57 Aligned_cols=348 Identities=14% Similarity=0.060 Sum_probs=279.4
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 51 LDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
...+.++... -+.+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 12 ~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444433 23467788999999999999999999999998765 667899999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcH---HHHHHH------------HHHHHhccchhHHHHHHH
Q 015246 131 GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA---ITYTTI------------MKCCFRNRKYKLGLEILS 195 (410)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~ 195 (410)
+ +.+...+..+..+|...|++++|...|+++..... .+. ..+..+ ...+...|++++|+..++
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 33688999999999999999999999999988542 233 455544 445889999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 196 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.... +.+
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDH 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCh
Confidence 999875 6678889999999999999999999999998863 3478899999999999999999999999998763 223
Q ss_pred hHHHHHH------------HHHHHhcCChhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 276 KYTHTIL------------IDGLCKAGNIKGARLHLEYMNKIGFDSN-----LEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 276 ~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
...+..+ +..+...|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444 78899999999999999999985 344 4478888999999999999999999886
Q ss_pred cC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHH------------HHhhcC-----CHHHHHH
Q 015246 339 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD------------GLRHSG-----CRREAKK 398 (410)
Q Consensus 339 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~ 398 (410)
.. +..+|..++.+|...|++++|...++++++.. +.+...+..+.. .|...| +.+++.+
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 43 67889999999999999999999999999753 335666666662 344445 5667777
Q ss_pred HHHH-HHHccC
Q 015246 399 IQSK-IRMAKI 408 (410)
Q Consensus 399 ~~~~-~~~~~~ 408 (410)
.+++ ..+..|
T Consensus 402 ~y~~~~l~~~p 412 (450)
T 2y4t_A 402 AYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHSCG
T ss_pred HHHHHHHHhCC
Confidence 7776 444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-25 Score=198.95 Aligned_cols=370 Identities=11% Similarity=-0.017 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|.+.++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778889999999999999999999965 689999999999999999999999999999876 6678899999999
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------------
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL---------------------------- 162 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------------- 162 (410)
+...|++++|...|+++...+. ++......++..+........+.+.+..+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998753 34444444444444332222222222111
Q ss_pred -------hhCCC---------CCcHHHHHHHHHHHHh---ccchhHHHHHHHHHHH-----cCC--------CCChhhHH
Q 015246 163 -------GDSGH---------APNAITYTTIMKCCFR---NRKYKLGLEILSAMKR-----KGY--------TFDGFGYC 210 (410)
Q Consensus 163 -------~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 210 (410)
..... +.+...+......+.. .|++++|...++++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00000 1124444444554554 8999999999999988 311 22345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
.+...+...|++++|...++.+.+.... ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8888999999999999999999987433 8888899999999999999999999998874 346778899999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
++++|...++++.+.. +.+...+..+...+...|++++|...++++... ++..+..++..+...|++++|...+++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999863 446778899999999999999999999988654 678899999999999999999999999
Q ss_pred HHHcCCCCc------HhhHHHHHHHHhh---cCCHHHHHHHHHHHHHccCC
Q 015246 368 CLKSGVRIL------KSAQKAVVDGLRH---SGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 368 ~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~ 409 (410)
+.+.. +.+ ...+..++..+.. .|++++|...++++....++
T Consensus 398 a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 398 AIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 98653 222 2388899999999 99999999999999887765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-22 Score=171.94 Aligned_cols=329 Identities=16% Similarity=0.085 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
++..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566667777777777777777777777653 2356667777777777777777777777776654 445666777777
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
++...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665210 12333333311100 00122234455666666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
++|...++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666554 4455556666666666666666666666666542 335556666666666666666666666666
Q ss_pred HhCCCCCchHHHH------------HHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHH
Q 015246 268 EKQGFECDKYTHT------------ILIDGLCKAGNIKGARLHLEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 268 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 331 (410)
.+.... +...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 654211 222221 23556777888888888888877653 2222 22445667778888888888
Q ss_pred HHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 332 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 332 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+++.... ++.++..++.++...|++++|...|+++++.. |.+...+..+..+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 888877653 56677778888888888888888888888653 334555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-22 Score=172.05 Aligned_cols=317 Identities=14% Similarity=0.037 Sum_probs=240.8
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
++..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34556667777777777777777777777654 4556777777777777777777777777777652 225566777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCC--CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 145 GLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
.+...|++++|...++++.+.... .+...+..+..... ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777664210 12222222221110 01133346788899999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999873 3477889999999999999999999999999874 447788999999999999999999999999
Q ss_pred HhcCCCCCHHHHH------------HHHHHHHccCChHHHHHHHHhhccC---Cc----hhHHHHHHHHHhcCChhhHHH
Q 015246 303 NKIGFDSNLEAYN------------CIVDRLGKDGKIDHAINVFESMEVK---DS----FTYSSMVHNLCKAKRLPSASK 363 (410)
Q Consensus 303 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~ 363 (410)
.+.. +.+...+. .+...+.+.|++++|...++++... ++ ..+..+..++...|++++|+.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 8863 33333333 2366789999999999999988765 22 235567889999999999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 364 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
.++++++.. +.+..++..++.++...|++++|...++++.+..|+|
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 999999874 5578899999999999999999999999999988865
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-22 Score=182.70 Aligned_cols=369 Identities=11% Similarity=0.015 Sum_probs=284.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
....+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34577888899999999999999999999875 3478899999999999999999999999998876 677889999999
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCcHHH----------
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG------HAPNAIT---------- 173 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~---------- 173 (410)
++...|++++|...|+.+ .. .|+ .....+..+...+....+...++.+.... ..|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999743 32 122 12223444555556677888888775421 1122221
Q ss_pred --------------------HHHHHHHHH--------hccchhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHH
Q 015246 174 --------------------YTTIMKCCF--------RNRKYKLGLEILSAMKRKGYTFDG-------FGYCTVIAAFVK 218 (410)
Q Consensus 174 --------------------~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 218 (410)
...+...+. ..+++++|...++++.+.. +.+. .++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 122222221 1257899999999998774 3332 246667778889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 219 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
.|++++|...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999986 4557888899999999999999999999998875 34678899999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-
Q 015246 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR- 374 (410)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 374 (410)
++++.+.. +.+...+..+..++...|++++|...++++... ++..+..++.++...|++++|...++++++....
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999864 445678999999999999999999999988765 6778999999999999999999999999865311
Q ss_pred ----CcHhhHHHHHHHHhhc----------CCHHHHHHHHHHHHHccCCC
Q 015246 375 ----ILKSAQKAVVDGLRHS----------GCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 375 ----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~ 410 (410)
.....+.....++... |++++|...++++.+..+++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 1112244556677777 99999999999999887753
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-20 Score=162.46 Aligned_cols=365 Identities=12% Similarity=0.034 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhH
Q 015246 13 DAGYTILNRMREAGISPDVVTYNSLIAGATR----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LGKPDE 84 (410)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 84 (410)
..+++.+....+. .++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3345666666553 477788888888888 889999999999988863 66778888888888 889999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhh----cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTAR 156 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 156 (410)
|.++|++..+.+ +...+..|...|.. .+++++|...|++..+.| ++..+..+...|.. .+++++|.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999988764 56677778888887 789999999999988875 56777788888887 78899999
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCCHHHHHHH
Q 015246 157 WILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDY 228 (410)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 228 (410)
+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999988864 67778888888887 889999999999988775 45567777777776 7899999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc-----CChhHHHHHH
Q 015246 229 MEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-----GNIKGARLHL 299 (410)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~ 299 (410)
+++..+.+ +...+..+...|.. .+++++|...|++..+.+ ++..+..+...+... +++++|..++
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99988763 45666777777777 889999999999988764 455677777888777 8999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHHHHHc
Q 015246 300 EYMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKS 371 (410)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 371 (410)
++..+.+ +...+..+...|...| ++++|...|++.... ++..+..+...|.. .+++++|..+|++..+.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 9998864 4566777778887766 788999999988776 78888899998888 88999999999999877
Q ss_pred CCCCcHhhHHHHHHHHhh----cCCHHHHHHHHHHHHHcc
Q 015246 372 GVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 407 (410)
| ++..+..+...|.. .+++++|...|++....+
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5 46677888888887 899999999999988776
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-19 Score=161.38 Aligned_cols=352 Identities=11% Similarity=0.014 Sum_probs=295.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cC
Q 015246 9 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LG 80 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 80 (410)
.+++++|++.|++..+.| ++..+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999999864 67788889999998 899999999999998864 66778888888888 88
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh----cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRL 152 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 152 (410)
++++|.++|++....+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 9999999999998765 46777788888887 789999999999998874 67888888899988 8999
Q ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCCHHH
Q 015246 153 RTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKE 224 (410)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 224 (410)
++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999998864 56677778888876 789999999999998775 45566777777877 899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC---ChhHHH
Q 015246 225 ATDYMEQMVTDGVQLDIVSYNTLINLYCKE-----GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG---NIKGAR 296 (410)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~ 296 (410)
|...|++..+.+ +...+..+...|... +++++|...+++..+.+ +...+..+...+...| ++++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998763 556777788888877 89999999999999875 4566777888887766 789999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHH
Q 015246 297 LHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLS 367 (410)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~ 367 (410)
.++++..+.+ ++..+..+...|.. .+++++|...|++.... ++..+..+...|.. .+++++|...|++
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999999864 67788889999988 89999999999998877 78889999999988 8999999999999
Q ss_pred HHHcCCC-C-cHhhHHHHHHHH
Q 015246 368 CLKSGVR-I-LKSAQKAVVDGL 387 (410)
Q Consensus 368 ~~~~~~~-~-~~~~~~~l~~~~ 387 (410)
+.+.+.. | +......+...+
T Consensus 429 A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 429 ASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHCCCCCcCCHHHHHHHHhcC
Confidence 9987643 2 344444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-21 Score=163.14 Aligned_cols=286 Identities=12% Similarity=-0.060 Sum_probs=153.6
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIML 108 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (410)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 444455556666666666666666666666543 2244455555566666666666666666665543 44455566666
Q ss_pred HHHhhcC-chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 109 NGLCKNR-YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 109 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 6666666 6666666666666542 22445555666666666666666666666555322 1233444455555666666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCCHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--------VQLDIVSYNTLINLYCKEGKLEA 259 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 259 (410)
++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 66666666655543 3444555555555555666666666555555431 02223445555555555555555
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 260 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 555555554442 2234444555555555555555555555554431 22334444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-21 Score=162.89 Aligned_cols=296 Identities=10% Similarity=-0.030 Sum_probs=156.9
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015246 64 PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI 143 (410)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (410)
.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 345556666666666677777777666666554 4445555556666666666666666666666542 22455566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 144 KGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 144 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
..+...| ++++|...+++...... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 6666666 66666666666655432 234445555555666666666666666555543 33334444455555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
++|...+++..+.. +.+...+..+...+...|++++|...++++.+.......
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------------- 228 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN-------------------------- 228 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC--------------------------
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc--------------------------
Confidence 55555555555442 223444555555555555555555555554432100000
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhh
Q 015246 303 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 379 (410)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 379 (410)
....+....++..+..++...|++++|...+++.... +...+..+..++...|++++|.+.++++++.. +.+...
T Consensus 229 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 306 (330)
T 3hym_B 229 -EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFS 306 (330)
T ss_dssp -SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHH
T ss_pred -cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHH
Confidence 0000122344455555555555555555555544332 44555556666666666666666666665442 334555
Q ss_pred HHHHHHHH-hhcCC
Q 015246 380 QKAVVDGL-RHSGC 392 (410)
Q Consensus 380 ~~~l~~~~-~~~g~ 392 (410)
+..+..++ ...|+
T Consensus 307 ~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 307 VTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhCc
Confidence 55555555 34444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-19 Score=161.13 Aligned_cols=396 Identities=12% Similarity=0.005 Sum_probs=290.4
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHH-HhcCChhH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL-FQLGKPDE 84 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 84 (410)
+.+.|++++|..+|+++.+.. |.+...|...+..+.+.|+++.|..+|++..... |+...|...+... ...|+.+.
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 467899999999999999864 5678899999999999999999999999999853 5777777777533 35677777
Q ss_pred HHH----HHHHHhcC-CCC-CChhHHHHHHHHHhh---------cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 015246 85 ANR----VFQDMICG-DLT-PCTATFNIMLNGLCK---------NRYTDNALRMFRGLQKHGFVPELVTYNILIKGL--- 146 (410)
Q Consensus 85 a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 146 (410)
|.+ +|+..... |.. ++...|...+..... .|+++.|..+|++..+....+....|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence 765 77766542 433 456778777776654 789999999999998841111123443332211
Q ss_pred ----------HhcCCHHHHHHHHHHH------hhCC---CCCc--------HHHHHHHHHHHHhc----cch----hHHH
Q 015246 147 ----------CKAGRLRTARWILKEL------GDSG---HAPN--------AITYTTIMKCCFRN----RKY----KLGL 191 (410)
Q Consensus 147 ----------~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~ 191 (410)
...+++..|..+++.+ .+.. ++|+ ...|...+...... ++. ..+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 1244567777777653 2221 2333 24555554433222 222 3677
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVK-------IGRLK-------EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 257 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 257 (410)
..|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++
T Consensus 259 ~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 259 FAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 8899988774 5677788888887775 68876 8999999998632344678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCc-h-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHHHH
Q 015246 258 EAAYLLLDEMEKQGFECD-K-YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR-LGKDGKIDHAINVF 334 (410)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~ 334 (410)
++|..+|+++.+. .|+ . ..|...+..+.+.|+++.|..+|++..+.. +.+...+...+.. +...|++++|..+|
T Consensus 338 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 338 EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 9999999999986 343 2 478888888889999999999999999852 2233444333333 34689999999999
Q ss_pred HhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCc--HhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 335 ESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 335 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
++.... ++..|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+.++.+++.+.-|
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 988755 67889999999999999999999999999764 2232 34777778888889999999999999877544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-21 Score=164.52 Aligned_cols=276 Identities=12% Similarity=-0.036 Sum_probs=143.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 147 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (410)
.+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555443 3344445555555555555555555555554432 224444455555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 015246 148 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 227 (410)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (410)
..|++++|...++++...... +...+..+... .. . ..+ ...+.. +..+...|++++|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~----------~-~~~-~~~~~~-~~~~~~~~~~~~A~~ 202 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG----------G-AGL-GPSKRI-LGSLLSDSLFLEVKE 202 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------CT-THHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh----------h-hcc-cHHHHH-HHHHhhcccHHHHHH
Confidence 555555555555554443211 11111000000 00 0 000 000001 222225666666666
Q ss_pred HHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 228 YMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
.++++.+..... +..++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666542211 35556666666666666666666666666543 2245566666666666666666666666666542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C-----------chhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D-----------SFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
+.+...+..+..++.+.|++++|...++++... + ..+|..++.++...|++++|..++++.
T Consensus 282 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 282 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 334556666666666677777776666655433 2 456777777777777777777766543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-18 Score=156.20 Aligned_cols=381 Identities=10% Similarity=0.015 Sum_probs=278.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 015246 19 LNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLT 98 (410)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 98 (410)
|++..+.. +-+...|..++.. .+.|++++|..+|+++.+. .|.+...|..++..+.+.|+++.|.++|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555554 5578899999984 7899999999999999986 44577889999999999999999999999999774
Q ss_pred CChhHHHHHHHHH-hhcCchHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 015246 99 PCTATFNIMLNGL-CKNRYTDNALR----MFRGLQK-HGFVP-ELVTYNILIKGLCK---------AGRLRTARWILKEL 162 (410)
Q Consensus 99 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 162 (410)
|+...|..++... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 34577776665 6776654 34433 56677777776655 68899999999999
Q ss_pred hhCCCCCcHHHHHHHHHHH-------------HhccchhHHHHHHHHHH------HcC---CCCCh--------hhHHHH
Q 015246 163 GDSGHAPNAITYTTIMKCC-------------FRNRKYKLGLEILSAMK------RKG---YTFDG--------FGYCTV 212 (410)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~--------~~~~~l 212 (410)
......+....|....... ...+++..|..++..+. +.. ++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8832222233444332211 13456777777776532 221 23331 234444
Q ss_pred HHHHHHc----CCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhC
Q 015246 213 IAAFVKI----GRL----KEATDYMEQMVTDGVQLDIVSYNTLINLYCK-------EGKLE-------AAYLLLDEMEKQ 270 (410)
Q Consensus 213 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 270 (410)
+...... ++. ..+..+|++.... .+.+...|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4332221 222 4777889998886 34477888888888775 68887 899999999863
Q ss_pred CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-H-HHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhH
Q 015246 271 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-L-EAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTY 345 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~ 345 (410)
-.+.+...+..++..+...|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++....++ ..|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 22345778888999999999999999999999985 454 3 5788888989999999999999999987633 233
Q ss_pred HHHHHH-HHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 346 SSMVHN-LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 346 ~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
...+.. +...|++++|..+|+++++.. +.+...|..++..+.+.|+.++|..+|++.....+
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 322222 336899999999999999763 55688999999999999999999999999987643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-21 Score=163.35 Aligned_cols=304 Identities=11% Similarity=-0.022 Sum_probs=182.6
Q ss_pred hhhcCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 6 YCQFVSFDAGYT-ILNRMREAGI-SP--DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 6 ~~~~g~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
+...|++++|++ .+++...... .| +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445677888887 7776554321 11 34568889999999999999999999999874 3477889999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+++|.+.|+++.+.. +.+..++..+..++...|++++|...++++...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 999999999998876 668889999999999999999999999999986432 22222211000 00
Q ss_pred HhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 162 LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
. ..+. ..+..+.. +...|++++|...++++.+.. +. +..++..+..++...|++++|...++++.... +.
T Consensus 178 ~----~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 G----AGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred h----hccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000 01111111 225555556666655555543 22 34455555555666666666666666555542 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----------C
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD----------S 309 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~ 309 (410)
+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 34555555566666666666666666655542 224455555666666666666666666655543110 0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
...+|..+..++...|++++|..+++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14556666666666666666666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=161.80 Aligned_cols=264 Identities=11% Similarity=-0.062 Sum_probs=179.0
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557788888888888888888888888765 5677888888888888888888888888888763 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCc-----------HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC--ChhhHHH
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPN-----------AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCT 211 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 211 (410)
.|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+.. +. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence 8888888888888888887632 22 1222334667777788888888888777764 33 5667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 291 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (410)
+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 7777777778888887777777653 3356677777777777777777777777777653 2246667777777777777
Q ss_pred hhHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 292 IKGARLHLEYMNKIGFD-----------SNLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 292 ~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
+++|...++++.+.... .+..+|..+..++...|+.+.+..+..
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777776653100 013445555555555555555554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=161.81 Aligned_cols=262 Identities=10% Similarity=-0.037 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 217 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (410)
.+..+...+.+.|++++|...|+++.+... .+..++..+..++...|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344455555555555555555555544321 244455555555555555555555555555543 334455555555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHH
Q 015246 218 KIGRLKEATDYMEQMVTDGVQ---------LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLC 287 (410)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 287 (410)
..|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 556666666665555543111 01122333466677777778888877777765322 14667777777777
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHH
Q 015246 288 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
..|++++|...++++.+.. +.+..++..+..+|...|++++|...++++... +..++..++.++...|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888777652 445677777888888888888888888876554 566778888888888888888888
Q ss_pred HHHHHHcCCC-----------CcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 365 LLSCLKSGVR-----------ILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 365 ~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
|+++++.... .+...|..+..++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888754211 1357788888899999999888877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-19 Score=156.46 Aligned_cols=368 Identities=9% Similarity=-0.080 Sum_probs=251.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC-----
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM--------GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG----- 95 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 95 (410)
.....|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999887642 11224567899999999999999999999887642
Q ss_pred C--CCCChhHHHHHHHHHhh--cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCC
Q 015246 96 D--LTPCTATFNIMLNGLCK--NRYTDNALRMFRGLQKHGFVPELVTYNILIKG---LCKAGRLRTARWILKELGDSGHA 168 (410)
Q Consensus 96 ~--~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 168 (410)
+ ......++..+..++.. .+++++|...|++..+..+ .++..+..+..+ +...++.++|++.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11234566655555554 4579999999999988633 255555555544 3456778889999998877542
Q ss_pred CcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhH
Q 015246 169 PNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 244 (410)
Q Consensus 169 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 244 (410)
.+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 345556555544443 467889999999998876 6677888999999999999999999999999863 3356666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 245 NTLINLYCKE-------------------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 245 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..+..+|... +.++.|...+++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666655432 23567788888877664 335667888999999999999999999999886
Q ss_pred CCCCCHH--HHHHHHH-HHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHH
Q 015246 306 GFDSNLE--AYNCIVD-RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 382 (410)
Q Consensus 306 ~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (410)
...|... .+..+.. .....|++++|+..+++....++..+.. .+....+.+++++.++.+ |.+..++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~-------~~~~~~l~~~~~~~l~~~-p~~~~~~~~ 435 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK-------EKMKDKLQKIAKMRLSKN-GADSEALHV 435 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH-------HHHHHHHHHHHHHHHHHC-C-CTTHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4333221 2233332 3457899999999999887764443321 122344556677776654 667889999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 383 VVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 383 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
++.+|...|++++|.+.|++..+.++.
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHCC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999877653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-19 Score=147.57 Aligned_cols=274 Identities=10% Similarity=-0.010 Sum_probs=205.6
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
++-....|++..|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345566899999999888765542221133556678899999999999886654 2356777888888889999999
Q ss_pred hHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
++|++.++++...+. |.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999987764 44556667777889999999999999887 45778888899999999999999999999
Q ss_pred HHhCCCCCchHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 267 MEKQGFECDKYTH---TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 267 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++...
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 98774 443211 12223344558999999999999887 4667888999999999999999999999987654
Q ss_pred CchhHHHHHHHHHhcCChhh-HHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHH
Q 015246 341 DSFTYSSMVHNLCKAKRLPS-ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
++.++..++..+...|+.++ +.++++++++. .|+.... .....+.+.++++..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHHH
Confidence 77788889989999999876 56888888866 3443322 2334455555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-19 Score=148.96 Aligned_cols=267 Identities=10% Similarity=-0.069 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|..+++++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566667777777777777777776653 2356666777777777777777777777776654 4566677777777
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHH
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNIL--------------IK-GLCKAGRLRTARWILKELGDSGHAPNAITYT 175 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (410)
+...|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+... .+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 77777777777777777765322 22223222 22 36667778888888887776532 3567777
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 255 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 255 (410)
.+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 77778888888888888888877764 4556677777888888888888888888877753 335677777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-----------chHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 256 KLEAAYLLLDEMEKQGFEC-----------DKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
++++|...++++.+..... +...+..+..++...|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888876653221 46677778888888888888888776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-19 Score=149.95 Aligned_cols=267 Identities=9% Similarity=-0.061 Sum_probs=182.2
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677788888899999999988887765 5577788888888888899999998888888763 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHH--------------HH-HHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTI--------------MK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.+...|++++|...++++...... +...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 888888888888888888765322 22222222 22 2556677777777777777664 4456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776652 2345666677777777777777777777776653 23455666677777777
Q ss_pred CChhHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHccCChHHHHHHHHhh
Q 015246 290 GNIKGARLHLEYMNKIGFDS-----------NLEAYNCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
|++++|...++++.+..... +...+..+..++...|++++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777777777766542111 3455666666666666666666665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=155.60 Aligned_cols=289 Identities=13% Similarity=0.092 Sum_probs=135.8
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 346788999999999983 2359999999999999999999999653 5777899999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
.+.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988777664 4557888899999999999999888874 367789999999999999999999999976
Q ss_pred CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 015246 166 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 245 (410)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (410)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36899999999999999999999988 26789999999999999999996655442 23444566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCC------CHHHHHHHH
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-IGFDS------NLEAYNCIV 318 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~ 318 (410)
.++..|.+.|.+++|..+++...... +-....|+.+..+|++- .+++..+.++.... .+++| +...|..++
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998664 44566777777777654 34444444443322 23333 467789999
Q ss_pred HHHHccCChHHHHHHHHhh
Q 015246 319 DRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~ 337 (410)
..|...++++.|....-+-
T Consensus 290 ~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhhchHHHHHHHHHhC
Confidence 9999999999887755443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-18 Score=149.63 Aligned_cols=353 Identities=11% Similarity=-0.024 Sum_probs=242.9
Q ss_pred hhhhhcCChHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC------C-CCChHh
Q 015246 4 DAYCQFVSFDAGYTILNRMREA--------GISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG------I-PPDVWS 68 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~ 68 (410)
..+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.. . .....+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 4677899999999999987653 123346689999999999999999999998876531 1 113455
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH---hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015246 69 YNSLMHCLFQ--LGKPDEANRVFQDMICGDLTPCTATFNIMLNGL---CKNRYTDNALRMFRGLQKHGFVPELVTYNILI 143 (410)
Q Consensus 69 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (410)
+.....++.. .+++++|.+.|++..+.. |.+...+..+..++ ...++.++|++.+++..+.. +.+...+..+.
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~ 216 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHH
Confidence 6666555554 457999999999998775 45566666665553 34577788999999988763 33566666665
Q ss_pred HHHHh----cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 144 KGLCK----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 144 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
..+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. |.+..++..+..+|...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 55544 467889999999987754 3467788899999999999999999999999875 55666676666655432
Q ss_pred -------------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH--H
Q 015246 220 -------------------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY--T 278 (410)
Q Consensus 220 -------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 278 (410)
+..+.|...++...+.. +.+...+..+...+...|++++|...|++..+....+... .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 23567888888887763 3466788899999999999999999999998875443321 2
Q ss_pred HHHHHH-HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhcc---CCchhHHHHHHHHHh
Q 015246 279 HTILID-GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---KDSFTYSSMVHNLCK 354 (410)
Q Consensus 279 ~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 354 (410)
+..+.. .....|++++|+..+++..+. .|+....... ...+.++++.... .++.+|..++.++..
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 233332 335789999999999999884 4553322222 2233344444332 278899999999999
Q ss_pred cCChhhHHHHHHHHHHcC
Q 015246 355 AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 355 ~~~~~~A~~~~~~~~~~~ 372 (410)
.|++++|++.|+++++.+
T Consensus 443 ~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHCC-------------
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 999999999999999765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-19 Score=144.10 Aligned_cols=220 Identities=11% Similarity=0.021 Sum_probs=100.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 015246 71 SLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKA 149 (410)
Q Consensus 71 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 149 (410)
.+.++|...|+++.|...++. . -+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 344444455555444443322 1 13344444444444545555555555555544433222 233334444445555
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH---HHHHHHHHHcCCHHHHH
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY---CTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~ 226 (410)
|++++|++.+++ +.+...+..++.++.+.|++++|.+.++++.+.. |+.... ..++..+...|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 555555555443 2344444444555555555555555555554442 221110 11112222334555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG-ARLHLEYMNK 304 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 304 (410)
.+|+++.+. .+.+...++.+..++.+.|++++|...++++.+.. +.++.++..++..+...|+.++ +..+++++.+
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555554 23344555555555555555555555555555442 2244445555555555555543 3455555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=150.38 Aligned_cols=281 Identities=12% Similarity=0.130 Sum_probs=137.2
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|.+.|.+ .+|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6788999999999983 345899999999999999999999965 3577799999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC
Q 015246 123 MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 202 (410)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (410)
.++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877774 4467888999999999999999988884 367789999999999999999999999976
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 282 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (410)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 47899999999999999999999988 27899999999999999999996655442 2334445578
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc--CChHHHHHHHHhhccC--------CchhHHHHHHHH
Q 015246 283 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD--GKIDHAINVFESMEVK--------DSFTYSSMVHNL 352 (410)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~ 352 (410)
+..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|..-... +...|..+...|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998764 55577888888777764 3445555555433221 678899999999
Q ss_pred HhcCChhhHHHHH
Q 015246 353 CKAKRLPSASKLL 365 (410)
Q Consensus 353 ~~~~~~~~A~~~~ 365 (410)
.+.++++.|....
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 9999999887643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=153.37 Aligned_cols=373 Identities=12% Similarity=0.015 Sum_probs=256.2
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL---SCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL 79 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (410)
...+.+.|++++|+++|++..+.| +..++..+...|...|+. ++|...|++..+. ++..+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 456778999999999999998876 344455566667778888 8999999998864 556677777755555
Q ss_pred C-----ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 80 G-----KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD---NALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 80 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
+ ++++|.++|++....| .++ .+..|...|...+..+ ++.+.+......| ++.....+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 7889999999998876 333 6666777777665543 4555555555443 35566677788888875
Q ss_pred HHHH----HHHHHHHhhCCCCCcHHHHHHHHHHHHhcc---chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc----C
Q 015246 152 LRTA----RWILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI----G 220 (410)
Q Consensus 152 ~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 220 (410)
++++ ..+++.... .++..+..+...|...| ++++|++.|++..+.+ +++...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 5444 444444433 23337778888888899 9999999999999988 66666656677777654 6
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC-----Ch
Q 015246 221 RLKEATDYMEQMVTDGVQLDIVSYNTLINL-Y--CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-----NI 292 (410)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 292 (410)
++++|...|++.. +-++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 3466677777776 4 56899999999999999876 5667777777776 45 99
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASK 363 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~ 363 (410)
++|..+|++.. . .+......+...|.. ..++++|...|++.... ++.....+...|.. .+++.+|..
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999999887 3 356777778877776 44899999999998877 78888888888874 568999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 364 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+|+...+.| .++.......+......++.++|.++.++.++.
T Consensus 380 ~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 380 FSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999887 444443333344444555677888887776554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-16 Score=147.70 Aligned_cols=346 Identities=13% Similarity=0.086 Sum_probs=241.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAG--ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL 79 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (410)
.+++|...|.+.+|+++++++.-.+ ...+...-+.++....+. +..+..+..+.+... + ...+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhC
Confidence 3567778888888888888888432 112344555566666665 445666665555421 1 33366777788
Q ss_pred CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 80 GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
|.+++|..+|++.. ......+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|+..|
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888888852 11222233322 6678888888877552 5778888888888899999988888
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 160 KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|.+.+++++...+. . .+
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 653 466777888888888899999988888877664 33333445888888888887544432 2 24
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
+...+..+...|...|++++|..+|..+ ..|..++..+.+.|+++.|.+.+++. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5566777888888888999998888875 36888888888888888888888776 24577888888
Q ss_pred HHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH--hhcCCHHHHH
Q 015246 320 RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL--RHSGCRREAK 397 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~ 397 (410)
+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++..+..+ +-....|..+..+| .+.++..++.
T Consensus 1259 acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888887764 33366677788888888888999988888887443 22344554444444 3445555555
Q ss_pred HHHH
Q 015246 398 KIQS 401 (410)
Q Consensus 398 ~~~~ 401 (410)
+.|.
T Consensus 1337 k~f~ 1340 (1630)
T 1xi4_A 1337 ELFW 1340 (1630)
T ss_pred HHHH
Confidence 5554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-15 Score=140.93 Aligned_cols=346 Identities=12% Similarity=0.112 Sum_probs=252.2
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
..+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -++.+|..+..++...|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 45677888899998888863 12222333333 677888888888865 25778888999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
+|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.+++++.....
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 999988663 566778888999999999999999998887764 33333345888888888887544332
Q ss_pred hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh
Q 015246 164 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 243 (410)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (410)
+ .++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 2 245566777888899999999999999874 36888888999999999999888876 26688
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+.+..++++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 888888888888888888766542 3356667788999999999999999998887653 3345566666666655
Q ss_pred --cCChHHHHHHHHhhccC--------CchhHHHHHHHHHhcCChhhHHHHH-------------HHHHHcCCCCcHhhH
Q 015246 324 --DGKIDHAINVFESMEVK--------DSFTYSSMVHNLCKAKRLPSASKLL-------------LSCLKSGVRILKSAQ 380 (410)
Q Consensus 324 --~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~-------------~~~~~~~~~~~~~~~ 380 (410)
.++..++.+.|..-... +...|..++..|.+.|+++.|...+ +..+ ....++..|
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~ely 1404 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELY 1404 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHH
Confidence 34555666666644332 5677999999999999999888322 2222 124466777
Q ss_pred HHHHHHHhhcC---------------CHHHHHHHHH
Q 015246 381 KAVVDGLRHSG---------------CRREAKKIQS 401 (410)
Q Consensus 381 ~~l~~~~~~~g---------------~~~~a~~~~~ 401 (410)
...+..|...+ +.+.+.++|.
T Consensus 1405 ykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1405 YRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77777776666 7777777766
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-17 Score=132.24 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC--CCC----hhhH
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFD----GFGY 209 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 209 (410)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++++.+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4456667777777777777777777776655 5666677777777777777777777777665421 111 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
..+..++...|++++|...+++.... .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 66667777777777777777777664 2332 33455566677777777666542 22345566666666677
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
|++++|...++++.+.. +.+...+..+..++...|++++|...+++.... ++..+..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777777666642 334556666666666666666666666665443 44556666666666666666666666
Q ss_pred HHHHc
Q 015246 367 SCLKS 371 (410)
Q Consensus 367 ~~~~~ 371 (410)
++++.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-16 Score=139.35 Aligned_cols=347 Identities=12% Similarity=0.043 Sum_probs=237.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh---hHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP---DEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|.++|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5677788999999999999998875 344555666777778888 8999999998753 55666667764555
Q ss_pred cC-----chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 114 NR-----YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR---TARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 114 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
.+ +.++|...|++..+.|.. ..+..|...|...+..+ .+.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 889999999999987643 36667777787766544 3455555555443 3445666777777777
Q ss_pred chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHH
Q 015246 186 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE----GKLE 258 (410)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 258 (410)
.++++......+.+.-...++..+..+...|...| +.++|...|++..+.|.. +...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 66555555444433322334448888889999999 999999999999988643 555556677777654 7999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHH-H--HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-----ChHHH
Q 015246 259 AAYLLLDEMEKQGFECDKYTHTILIDG-L--CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-----KIDHA 330 (410)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 330 (410)
+|...|++.. .| ++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999988 43 55566666666 3 46899999999999999876 6677777888877 55 99999
Q ss_pred HHHHHhhccCCchhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh----cCCHHHHHHHHHH
Q 015246 331 INVFESMEVKDSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSK 402 (410)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 402 (410)
...|++....++..+..+...|.. ..++++|..+|++..+.| +......+...|.. ..+.++|..++++
T Consensus 307 ~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 999999883388888888888876 448999999999999876 34455667776653 4589999999998
Q ss_pred HHHccC
Q 015246 403 IRMAKI 408 (410)
Q Consensus 403 ~~~~~~ 408 (410)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 877653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=128.42 Aligned_cols=228 Identities=9% Similarity=-0.037 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCC--CCChhHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDL--TPCTATFNIMLN 109 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 109 (410)
..+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|.+.++++.+... .++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------- 75 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY-------- 75 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch--------
Confidence 344445555555555555555555555544 3445555555555555555555555555443210 0010
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 189 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (410)
+.....+..+...+...|++++|...+++..... |+. ..+...|++++
T Consensus 76 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 76 -----------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEK 123 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHH
Confidence 0002344444444444444444444444444421 221 12333445555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 190 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
|...++.+.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+
T Consensus 124 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555442 3334444555555555555555555555555542 22444555555555555555555555555554
Q ss_pred CCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 270 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.. +.+...+..+...+...|++++|...+++..+
T Consensus 202 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 202 KD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 42 22344555555555555666666555555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-17 Score=127.25 Aligned_cols=209 Identities=13% Similarity=0.001 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIML 108 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (410)
++...+..+...+...|++++|...|++..+.. |.+...+..+..++...|++++|...|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344455555555555555555555555555432 1244455555555555555555555555555443 33444555555
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 188 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (410)
.++...+.. . +. .....|++++|+..+++..+..+ .+...+..+..++...|+++
T Consensus 81 ~~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 81 EAYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChH
Confidence 555544000 0 00 00000555555555555444321 13444444445555555555
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 189 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
+|+..+++..+.. .+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555444 344444455555555555555555555555432 223444445555555555555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-16 Score=128.90 Aligned_cols=240 Identities=11% Similarity=0.018 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh----hHHHHH
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF----GYCTVI 213 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 213 (410)
.+......+...|++++|...+++..+... .+...+..+..++...|++++|+..++++.+.. ++.. .+..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHH
Confidence 444555666667777777777776665432 233456666666666777777777777666632 2222 255666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChh
Q 015246 214 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 293 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (410)
.++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 66666677777777776666642 2245566666666666666666666666666552 224445555552333344666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC-----C------chhHHHHHHHHHhcCChh
Q 015246 294 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK-----D------SFTYSSMVHNLCKAKRLP 359 (410)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-----~------~~~~~~l~~~~~~~~~~~ 359 (410)
+|...++++.+.. +.+...+..+..++...|+ +++|...+++.... + ..+|..+...+...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 6666666666542 2234555555555555555 55555555544332 1 134555555666666666
Q ss_pred hHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 360 SASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 360 ~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
+|.+.++++++.. |.+......+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHhh
Confidence 6666666666543 33444444333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-16 Score=123.45 Aligned_cols=198 Identities=15% Similarity=0.025 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHH
Q 015246 99 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 178 (410)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (410)
++...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+..+ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 334444444444444444444444444444432 12344444444444444555555444444444321 1333444444
Q ss_pred HHHHhc-----------cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 179 KCCFRN-----------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 179 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
.++... |++++|+..+++..+.. |.+...+..+..++...|++++|+..+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 444444 55555555555555543 3344445555555555555555555555555543 344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555442 223444444455555555555555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-15 Score=122.03 Aligned_cols=223 Identities=9% Similarity=-0.016 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHH
Q 015246 135 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYC 210 (410)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (410)
++.++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777888888888888888888888773 345667777788888 888888888888888775 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 015246 211 TVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTIL 282 (410)
Q Consensus 211 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (410)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888888763 66777778888887 888888888888888765 45566677
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhccC-CchhHHHHHHHHH
Q 015246 283 IDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLC 353 (410)
Q Consensus 283 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~ 353 (410)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++.... ++..+..+...+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777777 788888888888887753 45667777777777 88888888888877666 5667777777777
Q ss_pred h----cCChhhHHHHHHHHHHcC
Q 015246 354 K----AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 354 ~----~~~~~~A~~~~~~~~~~~ 372 (410)
. .+++++|.+.|++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 7 788888888888887765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=157.50 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHH---cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLE---MGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI 106 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (410)
-..+|+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCch-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 107 MLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 107 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999984 78999999999999999999999888655554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=156.70 Aligned_cols=119 Identities=11% Similarity=0.152 Sum_probs=110.0
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhc---CCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMIC---GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL 142 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (410)
..+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc
Q 015246 143 IKGLCKAGRL-RTARWILKELGDSGHAPNAITYTTIMKCCFRN 184 (410)
Q Consensus 143 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (410)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999984 78999999999999999999999888655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-14 Score=118.73 Aligned_cols=223 Identities=13% Similarity=-0.014 Sum_probs=140.4
Q ss_pred ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCcHHHHH
Q 015246 100 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYT 175 (410)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (410)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666666666667777777777666662 244556666666666 667777777777666643 455666
Q ss_pred HHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 176 TIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 176 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
.+...+.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 667777777777666653 45556666666666 667777777777666643 44555556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 248 INLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 248 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
...|.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 666777777776666553 34555566666666 667777777776666643 2455556666
Q ss_pred HHHc----cCChHHHHHHHHhhccC
Q 015246 320 RLGK----DGKIDHAINVFESMEVK 340 (410)
Q Consensus 320 ~~~~----~g~~~~A~~~~~~~~~~ 340 (410)
+|.. .+++++|...+++....
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 6666 66666776666655443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.3e-16 Score=127.31 Aligned_cols=241 Identities=9% Similarity=-0.138 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHhhCCC---CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 015246 150 GRLRTARWILKELGDSGH---APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (410)
|++++|+..++++.+... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555544321 1123444555555555555555555555555543 334555555566666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
..++++.+.. +.+...+..+..++...|++++|...++++.+.. |+..........+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666665542 2245556666666666666666666666665542 222222333333445566777777776655542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhh
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 379 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 379 (410)
+++... ..++..+...++.++|...+++.... +...+..++.++...|++++|...|+++++. .|+.
T Consensus 175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 233222 23555666666667777777766655 1456777778888888888888888888754 3322
Q ss_pred HHHHHHHHhhcCCHHHHHHHH
Q 015246 380 QKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 380 ~~~l~~~~~~~g~~~~a~~~~ 400 (410)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223355667777777777765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-16 Score=128.65 Aligned_cols=222 Identities=10% Similarity=-0.054 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 217 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (410)
.+..+...+...|++++|...|+++..... .+...+..+..++...|++++|...++++.+.. +.+...+..+..++.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 344444444444444444444444444321 234444444444444444444444444444432 233444444444455
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHH
Q 015246 218 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 297 (410)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (410)
..|++++|...++++.+. .|+.......+..+...|++++|...+.+..... +++... ..++..+...++.++|..
T Consensus 123 ~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHH
Confidence 555555555555554443 1222222222223334455555555554444332 112222 223334444444455555
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHH
Q 015246 298 HLEYMNKIGFD---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 365 (410)
Q Consensus 298 ~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 365 (410)
.++...+.... .+...+..+...+...|++++|...|+++...++..+.....++...|++++|++.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 55444432100 013445555555555566666666665555554444444444555555555555444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-15 Score=122.99 Aligned_cols=163 Identities=12% Similarity=0.127 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC--hhHHHHHHHHHh
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC--TATFNIMLNGLC 112 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 112 (410)
......+...|++++|+..+++..+... .+...+..+..++...|++++|.+.++++...+..++ ...|..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344455555555555555555554321 1333455555555555555555555555554211111 112444555555
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 192 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (410)
..|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544321 133444444555555555555555554444431 1223333333312222234444444
Q ss_pred HHHHHHHc
Q 015246 193 ILSAMKRK 200 (410)
Q Consensus 193 ~~~~~~~~ 200 (410)
.++++.+.
T Consensus 164 ~~~~a~~~ 171 (272)
T 3u4t_A 164 SFVKVLEL 171 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-13 Score=122.41 Aligned_cols=393 Identities=10% Similarity=0.002 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---hhHHHHHH
Q 015246 13 DAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK---PDEANRVF 89 (410)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 89 (410)
.+.+..|++....+ +-|..+|..++..+.+.+.++.+..+|+.+... .|.....|...+..-.+.|+ ++.+.++|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34445556655554 567777777777777777777778888777765 45566667777777677777 77778888
Q ss_pred HHHhcCC-CCCChhHHHHHHHHHhhcCch--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---------
Q 015246 90 QDMICGD-LTPCTATFNIMLNGLCKNRYT--------DNALRMFRGLQK-HGF-VP-ELVTYNILIKGLCK--------- 148 (410)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--------- 148 (410)
++.+... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 7777653 136777777766655444432 233456665443 344 33 34566665554332
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH-------------hccchhHH-------------------------
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCF-------------RNRKYKLG------------------------- 190 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a------------------------- 190 (410)
.++++.+..+|+.+.......-..+|......-. ...+++.|
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 2345666667766664211111122211111000 00111222
Q ss_pred ------------------------------------------HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH-H
Q 015246 191 ------------------------------------------LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT-D 227 (410)
Q Consensus 191 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~ 227 (410)
..+|++++... +.....|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 22333333321 223334444445555666666775 7
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC------------chHHHHHHHHHH
Q 015246 228 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---------FEC------------DKYTHTILIDGL 286 (410)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~ 286 (410)
+++..... .+.+...|...+......|+++.|.++|+++.... ..| ....|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 77777664 33455556666667777777777877777776431 012 122456666666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHH
Q 015246 287 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD-GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
.+.|+.+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+...+. ++..|...+......|+.+.|.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 66777778888887777641112234444333333343 3477888887777655 5556666677677777888888
Q ss_pred HHHHHHHHcCCCC--cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 363 KLLLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 363 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+|++++....++ ....|..++..-.+.|+.+.+.++.+++.+.-|+
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888877653211 3356666666667778888888888877776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-15 Score=118.90 Aligned_cols=200 Identities=13% Similarity=-0.011 Sum_probs=104.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
..+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555555556666666666666555443 3345555555556666666666666666555442 22445555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 015246 147 CKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (410)
...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 56666666666665555421222 33444455555555555555555555555443 33344455555555555555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
...++.+.+. .+.+...+..+...+...|++++|...++++.+.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555555443 1223444444455555555555555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-15 Score=121.59 Aligned_cols=198 Identities=10% Similarity=-0.035 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 250 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 250 (410)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667777888888888888888888888775 5567777888888888888888888888888763 2366777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 015246 251 YCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (410)
+...|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887632233 45667777778888888888888888877753 3456677777777888888888
Q ss_pred HHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 330 AINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 330 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
|...++++... +...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88887776654 4556666777777778888888877777765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-15 Score=128.59 Aligned_cols=224 Identities=9% Similarity=0.002 Sum_probs=102.5
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLINLYC 252 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (410)
|..+..++...|++++|+..++++++.+ +.+...|..+..++...|+ +++|+..++++++.... +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 3344444444445555555555544443 3334444444444444453 55555555555443221 3444444444555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-cCChHHH-
Q 015246 253 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK-DGKIDHA- 330 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A- 330 (410)
..|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 5555555555555554443 1134444444555555555555555555554432 2234444444444444 3332444
Q ss_pred ----HHHHHhhccC---CchhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC--------C-
Q 015246 331 ----INVFESMEVK---DSFTYSSMVHNLCKAK--RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG--------C- 392 (410)
Q Consensus 331 ----~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~- 392 (410)
+..+++.... +...|..+..++...| ++++|++.+.++ +. -+.+...+..++.+|.+.| +
T Consensus 256 ~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 2444433322 3344444444444444 345555555554 22 1333444445555554432 1
Q ss_pred HHHHHHHHHHH
Q 015246 393 RREAKKIQSKI 403 (410)
Q Consensus 393 ~~~a~~~~~~~ 403 (410)
.++|.++++++
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555555
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-15 Score=117.55 Aligned_cols=198 Identities=9% Similarity=-0.034 Sum_probs=116.9
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45556666667777777777777777766654 4455566666666777777777777777766642 224556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 015246 250 LYCKE-GKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 327 (410)
Q Consensus 250 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (410)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 77777777776666522122 24455566666666666666666666666542 22345555555555666666
Q ss_pred HHHHHHHHhhccC----CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 328 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 328 ~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
++|...++++... +...+..+...+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666555554332 233444444445555555555555555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-15 Score=125.95 Aligned_cols=229 Identities=9% Similarity=0.005 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK-PDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
..|..+...+...|++++|++.+++..+... .+..+|+.+..++...|+ +++|+..|++++..+ +.+...|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4566666666677777777777777766532 245666666677777775 777777777766654 4556667777777
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh-ccchhH
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKL 189 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 189 (410)
+...|++++|+..|+++.+... -+...|..+..++...|++++|+..++++.+... .+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 7777777777777777666532 2566666666666667777777777776666432 245566666666666 444355
Q ss_pred H-----HHHHHHHHHcCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------
Q 015246 190 G-----LEILSAMKRKGYTFDGFGYCTVIAAFVKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG------- 255 (410)
Q Consensus 190 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 255 (410)
| +..+++.+... +.+...|..+..++...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 5 35555555553 334455555555555555 455666655555 22 2234445555555555542
Q ss_pred --CHHHHHHHHHHH
Q 015246 256 --KLEAAYLLLDEM 267 (410)
Q Consensus 256 --~~~~a~~~~~~~ 267 (410)
..++|..+++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 135566666655
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-14 Score=115.57 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
..+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.... +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444444444444444444432 1133344444444444444444444444443332 22333344444444
Q ss_pred hhc-CchHHHHHHHHHHHh
Q 015246 112 CKN-RYTDNALRMFRGLQK 129 (410)
Q Consensus 112 ~~~-~~~~~a~~~~~~~~~ 129 (410)
... |++++|...++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHc
Confidence 444 444444444444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-15 Score=123.11 Aligned_cols=210 Identities=14% Similarity=0.093 Sum_probs=148.6
Q ss_pred CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015246 169 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 248 (410)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (410)
.....+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667777788888899999999999888765 5567788888888889999999999999888763 33677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH
Q 015246 249 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 328 (410)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 328 (410)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 88888999999999998888764 3366778888888888899999999998888753 446777888888888888888
Q ss_pred HHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 329 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 329 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
+|...++++... +..++..++.++...|++++|...++++++.. +.+...+..+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 888888877654 56677888888888888888888888888763 3344444333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=122.22 Aligned_cols=201 Identities=13% Similarity=0.066 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 135 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 214 (410)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (410)
....|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666777777778888888777777643 2356677777777777788888888887777664 445666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhH
Q 015246 215 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 294 (410)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (410)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777788888888887777653 3356667777777777788888888877777653 3356667777777777788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 295 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 295 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
|...++++.+.. +.+..++..+..++...|++++|...++++...
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888877777652 345667777777777788888887777776554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-15 Score=132.14 Aligned_cols=151 Identities=13% Similarity=-0.030 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-chH
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQG----FEC-DKY 277 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 277 (410)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 4555666666667777776666666543110 11 2255666666777777777777776664321 000 134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cch
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF 343 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~ 343 (410)
++..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++.... ...
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 5566667777777777777777766542 1011 1345566666777777777777777665433 233
Q ss_pred hHHHHHHHHHhcCCh
Q 015246 344 TYSSMVHNLCKAKRL 358 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~ 358 (410)
++..+...+...|+.
T Consensus 349 ~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHh
Confidence 455556666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-15 Score=131.80 Aligned_cols=269 Identities=13% Similarity=0.060 Sum_probs=144.3
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCcHH
Q 015246 102 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----G-HAPNAI 172 (410)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 172 (410)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|...+++.... + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445666777788888888888887765322 32 35667777777788888888877776542 1 112345
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGFGYCTVIAAFVKIGR-----------------LKEATDYME 230 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 230 (410)
.+..+..++...|++++|...+++..+.. .+....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56666667777777777777777765431 01123355566666666666 666666666
Q ss_pred HHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc----hHHHHHHHHHHHhcCChhHHHHHHH
Q 015246 231 QMVTD----GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLE 300 (410)
Q Consensus 231 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (410)
+..+. +. ......+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 55432 00 111234455555566666666666666555432100 01 1144455555555555555555555
Q ss_pred HHHhcCCC-----CCHHHHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 301 YMNKIGFD-----SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 301 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
+..+.... ....++..+...+...|++++|...+++.... ...++..+..++...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 54432100 01233444455555555555555555544332 12234444445555555555555555
Q ss_pred HHHHc
Q 015246 367 SCLKS 371 (410)
Q Consensus 367 ~~~~~ 371 (410)
++++.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-15 Score=128.75 Aligned_cols=298 Identities=11% Similarity=0.004 Sum_probs=208.5
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHAP 169 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 169 (410)
.+....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 455666777888899999999999999998876322 3 356778888999999999999999886542 2112
Q ss_pred -cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHHcCC--------------------HH
Q 015246 170 -NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TFD----GFGYCTVIAAFVKIGR--------------------LK 223 (410)
Q Consensus 170 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~ 223 (410)
...++..+..++...|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255677788888999999999999988775410 011 3367777888888888 88
Q ss_pred HHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCc----hHHHHHHHHHHHhcCChh
Q 015246 224 EATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECD----KYTHTILIDGLCKAGNIK 293 (410)
Q Consensus 224 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 293 (410)
+|...+++.... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888877653 111 1234677777888888999999888888765311 111 226777788888888888
Q ss_pred HHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChh
Q 015246 294 GARLHLEYMNKI----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLP 359 (410)
Q Consensus 294 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~ 359 (410)
+|...+++..+. +..+ ...++..+...+...|++++|...+++.... ...++..+..++...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888887643 1111 1456677788888888888888888876543 1446777788888888888
Q ss_pred hHHHHHHHHHHcCCCCc-----HhhHHHHHHHHhhcCCHHHH
Q 015246 360 SASKLLLSCLKSGVRIL-----KSAQKAVVDGLRHSGCRREA 396 (410)
Q Consensus 360 ~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a 396 (410)
+|...++++++...... ..++..+...+...|+...+
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 88888888876532122 12444555555555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-15 Score=129.30 Aligned_cols=274 Identities=14% Similarity=0.004 Sum_probs=202.6
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh----hHHHHHHHHHhhcCchHHHHHHHHHHHhC----C-CCCCH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT----ATFNIMLNGLCKNRYTDNALRMFRGLQKH----G-FVPEL 136 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 136 (410)
...+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445567778888999999999999988764 3333 46788888899999999999999887653 1 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCcHHHHHHHHHHHHhccc-----------------hhHHHHHH
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKELGDS----G-HAPNAITYTTIMKCCFRNRK-----------------YKLGLEIL 194 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 194 (410)
..+..+...|...|++++|...+++.... + .+....++..+..++...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56778888899999999999999887653 1 11234567778888889999 89998888
Q ss_pred HHHHHc----CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 015246 195 SAMKRK----GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD----IVSYNTLINLYCKEGKLEAAYLLL 264 (410)
Q Consensus 195 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 264 (410)
++..+. +. +.....+..+...+...|++++|...+++..+.... ++ ...+..+..++...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887643 11 112346777888889999999999999988875211 11 126777888899999999999999
Q ss_pred HHHHhCCCC-C----chHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHccCChHHHHHHH
Q 015246 265 DEMEKQGFE-C----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GF-DSNLEAYNCIVDRLGKDGKIDHAINVF 334 (410)
Q Consensus 265 ~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (410)
++....... . ...++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988765211 1 1456777888889999999999999987653 11 111346777888899999999999999
Q ss_pred HhhccC
Q 015246 335 ESMEVK 340 (410)
Q Consensus 335 ~~~~~~ 340 (410)
++....
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877766
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-15 Score=125.49 Aligned_cols=272 Identities=15% Similarity=0.055 Sum_probs=142.7
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CcHHHH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHA-PNAITY 174 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 174 (410)
+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455555666666666666666554211 2 234555555666666666666666554331 101 113334
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
..+...+...|++++|...+++..+... .++.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 4444455555555555555555443210 00100 001233344444444
Q ss_pred cCC--------------------HHHHHHHHHHHHhC----CC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc---
Q 015246 254 EGK--------------------LEAAYLLLDEMEKQ----GF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--- 305 (410)
Q Consensus 254 ~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 305 (410)
.|+ +++|...+++.... +. ......+..+...+...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 444 45555444443221 10 011234555555666666666666666655432
Q ss_pred -CCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc---
Q 015246 306 -GFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS--- 371 (410)
Q Consensus 306 -~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 371 (410)
+.. .....+..+...+...|++++|...+++.... ...++..+...+...|++++|...++++++.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000 01225556666667777777777776665433 1345666777777888888888888777643
Q ss_pred -CCC-CcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 372 -GVR-ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 372 -~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
+-+ ....++..+...|...|++++|...+++..+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 111 113466677778888888888888888876643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-14 Score=120.87 Aligned_cols=229 Identities=9% Similarity=-0.058 Sum_probs=137.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHcC--C----CCChhhHH
Q 015246 142 LIKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--Y----TFDGFGYC 210 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 210 (410)
....+...|++++|...+++.... +..+ ...++..+..++...|+++.|...+.+..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666777788887777777553 1111 23556667777777777777777777766531 0 11123566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCchHHHH
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQ-L----DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GF-ECDKYTHT 280 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 280 (410)
.+..+|...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777778888887777776653111 1 1135666777777777777777777776551 22 22345566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC--CchhHHHHHHH
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKI----GFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVHN 351 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~~~~~~l~~~ 351 (410)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.... ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6777777777777777777766542 111112223445556666666 56666666655332 23345556666
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 015246 352 LCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~ 370 (410)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-13 Score=113.98 Aligned_cols=231 Identities=6% Similarity=-0.061 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh-------ccch-------hHHHHH
Q 015246 136 LVTYNILIKGLCKA----GRL----RTARWILKELGDSGHAPNAITYTTIMKCCFR-------NRKY-------KLGLEI 193 (410)
Q Consensus 136 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 193 (410)
...|...+..-.+. ++. ++|..+|++..... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555555554433 232 56777777776642 2356666666666543 3664 677777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-IV-SYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
|++..+.-.+.+...|..++..+...|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776311344556777777777777777777777777764 332 33 67777777777777777777777777653
Q ss_pred CCCchHHHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-------Cch
Q 015246 272 FECDKYTHTILIDGLC-KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSF 343 (410)
Q Consensus 272 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~ 343 (410)
+++...|...+.... ..|+++.|..+|++..+.. +.+...|..++..+.+.|++++|..+|++.... ...
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 223333433332222 2577777777777776642 335666677777777777777777777766552 223
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.|..++......|+.++|..+++++++.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666666666777777777777777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=121.20 Aligned_cols=274 Identities=12% Similarity=0.003 Sum_probs=169.9
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----hhHHHHHHHHHhhcCchHHHHHHHHHHHhC----CCC-CCH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC----TATFNIMLNGLCKNRYTDNALRMFRGLQKH----GFV-PEL 136 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 136 (410)
...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455666788899999999999999998864 333 367888999999999999999999987543 111 135
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCc----HHHHHHHHHHHHhccc--------------------hhHHH
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKELGDSGH-APN----AITYTTIMKCCFRNRK--------------------YKLGL 191 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 191 (410)
..+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5778889999999999999999998765311 112 3366677777888888 66666
Q ss_pred HHHHHHHHc----CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 192 EILSAMKRK----GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 192 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
..+++.... +. +.....+..+...+...|++++|...+++..+....
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------- 215 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---------------------------- 215 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----------------------------
Confidence 666655432 10 011223334444444445555555554444432100
Q ss_pred HHhCCC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 267 MEKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 267 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+. .....++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++....
T Consensus 216 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 216 ---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 000 001124445555555566666666665554432 0000 1344555666666667777776666655433
Q ss_pred ---------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 341 ---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 341 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
...++..+...+...|++++|...++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1335666777778888888888888877754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=109.93 Aligned_cols=164 Identities=15% Similarity=0.025 Sum_probs=94.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 284 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (410)
+...|..+..++...|++++|+..|++..+..+ -+...+..+..+|...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 445566666666666666666666666665532 245556666666666666666666666665543 223445555555
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhH
Q 015246 285 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 361 (410)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 361 (410)
.+...++++.+...+.+..+.. +.+...+..+..++...|++++|+..|++.... ++.+|..++.++...|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 5666666666666666665542 334555555556666666666666666555433 444555555556666666666
Q ss_pred HHHHHHHHHc
Q 015246 362 SKLLLSCLKS 371 (410)
Q Consensus 362 ~~~~~~~~~~ 371 (410)
++.|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666665543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.7e-14 Score=120.63 Aligned_cols=227 Identities=12% Similarity=-0.018 Sum_probs=176.0
Q ss_pred HHHHHHhccchhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CChhhHH
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRK----GYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ------LDIVSYN 245 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 245 (410)
....+...|++++|...+++..+. +.++ ...++..+..+|...|++++|...+++..+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778899999999999999864 1111 3457888899999999999999999998764111 1235678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc----hHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCCHHHHH
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLEYMNKI----GF-DSNLEAYN 315 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 315 (410)
.+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988653111 11 247888999999999999999999998762 23 33467788
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC-----Cc---hhHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCC-cHhhHHHH
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK-----DS---FTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRI-LKSAQKAV 383 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 383 (410)
.+...+.+.|++++|...+++.... ++ ..+..+...+...|+ .++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999987654 22 235667778888888 77777777776 3333 35577788
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHc
Q 015246 384 VDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 384 ~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+..|...|++++|...+++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-11 Score=111.39 Aligned_cols=380 Identities=10% Similarity=-0.002 Sum_probs=252.9
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHcC-CCCChHhHHHHHHHHH
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL---LSCSLDLLDEMLEMG-IPPDVWSYNSLMHCLF 77 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 77 (410)
+++.+.+.+.++.+..+|+++...- +.....|...+..-.+.++ ++.+..+|++..... .+|++..|...+....
T Consensus 72 yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~ 150 (679)
T 4e6h_A 72 LLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVR 150 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4566667788999999999998763 5677788888888888888 889999999888753 1367777877776665
Q ss_pred hcCCh--------hHHHHHHHHHhc-CCC-CC-ChhHHHHHHHHHh---------hcCchHHHHHHHHHHHhCCCCCCHH
Q 015246 78 QLGKP--------DEANRVFQDMIC-GDL-TP-CTATFNIMLNGLC---------KNRYTDNALRMFRGLQKHGFVPELV 137 (410)
Q Consensus 78 ~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~ 137 (410)
+.++. +...++|+..+. .|. .+ +...|...+.... ..++.+.+..+|+.+.......-..
T Consensus 151 ~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~ 230 (679)
T 4e6h_A 151 KKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLES 230 (679)
T ss_dssp HHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHH
T ss_pred HhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHH
Confidence 55543 334467777554 244 33 4567777765543 2344666777777776431111112
Q ss_pred HHHHH-------------------------------------------------------------------------HH
Q 015246 138 TYNIL-------------------------------------------------------------------------IK 144 (410)
Q Consensus 138 ~~~~l-------------------------------------------------------------------------~~ 144 (410)
+|... +.
T Consensus 231 ~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~ 310 (679)
T 4e6h_A 231 MWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR 310 (679)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH
Confidence 22111 10
Q ss_pred HHHhcC-------CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH-HHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 145 GLCKAG-------RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL-EILSAMKRKGYTFDGFGYCTVIAAF 216 (410)
Q Consensus 145 ~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (410)
.--..+ ..+.+..+|++.... .+-....|...+..+...|+.++|. +++++..... |.+...+...+...
T Consensus 311 fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 311 WESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQY 388 (679)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 000000 011122334433332 1224455556666667778888996 9999998753 55666677788888
Q ss_pred HHcCCHHHHHHHHHHHHHcCC---------CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 217 VKIGRLKEATDYMEQMVTDGV---------QLD------------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
.+.|+++.|..+|+.+..... .|+ ..+|...+....+.|+.+.|..+|.++.+....+.
T Consensus 389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~ 468 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT 468 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Confidence 899999999999999886410 132 23677778888888999999999999987611223
Q ss_pred hHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc------hhHHHH
Q 015246 276 KYTHTILIDGLCKA-GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------FTYSSM 348 (410)
Q Consensus 276 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l 348 (410)
...|...+..-.+. ++.+.|..+|+...+. .+.+...+..++......|+.+.|+.+|++.....+ ..|...
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444333444 4589999999999886 455677778888888889999999999999887633 568888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 349 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 349 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
+..-...|+.+.+..+.+++.+. .|+......+..-|
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88888999999999999999977 34433333344333
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-12 Score=108.87 Aligned_cols=84 Identities=7% Similarity=-0.088 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--chHHHHHHHHHHHhcCChhHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FEC--DKYTHTILIDGLCKAGNIKGAR 296 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~ 296 (410)
|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444331 1133344444444444444444444444444431 122 1223333344444444444444
Q ss_pred HHHHHHHh
Q 015246 297 LHLEYMNK 304 (410)
Q Consensus 297 ~~~~~~~~ 304 (410)
.+++++.+
T Consensus 262 ~~~~~a~~ 269 (308)
T 2ond_A 262 KVEKRRFT 269 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=120.63 Aligned_cols=241 Identities=15% Similarity=0.087 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc------C-
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDS-------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------G- 201 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 201 (410)
..++..+...+...|++++|...++++.+. ..+.....+..+..++...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555566666666666666666665541 11223344555555555566666666655555433 1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015246 202 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD------GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 274 (410)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 274 (410)
.+.....+..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...++++.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--- 183 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY--- 183 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---
Confidence 1112334444555555555555555555554432 00 1122233444444444455555554444443320
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC-----------
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------- 340 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 340 (410)
.+. +..| ...++..+..++...|++++|...++++...
T Consensus 184 ----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 184 ----------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ----------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ----------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 000 1011 1233444444555555555555555444321
Q ss_pred -------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 341 -------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 341 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
....+......+...+.+.++...++...... +....++..++.+|.+.|++++|.+.+++..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11122223334455667777777777776542 44567788888889999999999999988876654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-14 Score=124.52 Aligned_cols=215 Identities=10% Similarity=-0.045 Sum_probs=169.9
Q ss_pred ChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh-hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHH
Q 015246 46 LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP-DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMF 124 (410)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (410)
.+++++..++..... .+.+...+..+..++...|++ ++|.+.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 466777777776654 234677788888888888888 88888888887765 556788888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc--------cch
Q 015246 125 RGLQKHGFVPELVTYNILIKGLCKA---------GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN--------RKY 187 (410)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 187 (410)
++..+.. |+...+..+...+... |++++|...+++..+... .+...|..+..++... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888763 5567888888888888 888889888888877542 3577788888888888 889
Q ss_pred hHHHHHHHHHHHcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYT---FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 264 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 264 (410)
++|+..|++..+.. + .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888874 4 577788888888889999999999998888763 235667788888888888888888766
Q ss_pred HHH
Q 015246 265 DEM 267 (410)
Q Consensus 265 ~~~ 267 (410)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-13 Score=121.22 Aligned_cols=212 Identities=9% Similarity=-0.050 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
++++.+.++...... +.+...+..+...+...|++ ++|...|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666665543 45677788888888888888 88888888887763 2357778888888888888888888888
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc--------CCHH
Q 015246 161 ELGDSGHAPNAITYTTIMKCCFRN---------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI--------GRLK 223 (410)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 223 (410)
+..+.. |+...+..+..++... |++++|+..+++..+.. +.+...+..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887753 5567777777788777 88888888888877765 55666777777777777 7777
Q ss_pred HHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 224 EATDYMEQMVTDGVQ--LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
+|...|++..+.... .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777765221 356667777777777777777777777776653 224555666666666667666666544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=8.7e-13 Score=100.96 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
+..+..+|.+.|++++|...|++..
T Consensus 144 ~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 144 YQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-12 Score=111.33 Aligned_cols=226 Identities=12% Similarity=-0.012 Sum_probs=124.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CC----cHHHHHHHHHHHHhccchhHHHHHHHHHHHcC--CC----CChhhHHH
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGH-AP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--YT----FDGFGYCT 211 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~ 211 (410)
...+...|++++|...+++...... .+ ...++..+..++...|+++.|...+.+..+.. .. ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 4445566777777777766654210 01 23455566666677777777777766665431 00 01334556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCchHHHHH
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTHTI 281 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 281 (410)
+..+|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 666677777777777777666542 111 1123455566667777777777777766654 22 222455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC--CchhHHHHHHHH
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGF----DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVHNL 352 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~~~~~~l~~~~ 352 (410)
+...+...|++++|...+++..+... +.....+..+...+...++ +.+|...+++.... ....+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 66677777777777777776654311 1112233444445555555 55555555543222 223444555556
Q ss_pred HhcCChhhHHHHHHHHH
Q 015246 353 CKAKRLPSASKLLLSCL 369 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~ 369 (410)
...|++++|...|+++.
T Consensus 347 ~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666665554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-14 Score=117.12 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=137.2
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS----- 165 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 165 (410)
+.+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 344677888999999999999999999998873 23335667888999999999999999999998763
Q ss_pred -C-CCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 015246 166 -G-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD- 235 (410)
Q Consensus 166 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 235 (410)
+ .+.....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...+++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2234667888899999999999999999998865 21 223456778889999999999999999998774
Q ss_pred -----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 236 -----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 236 -----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
+..| ...++..+..++...|++++|...++++.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122 3456777788888888888888888888753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-11 Score=106.62 Aligned_cols=297 Identities=13% Similarity=0.029 Sum_probs=192.5
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCcH----HHH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV----TYNILIKGLCKAGRLRTARWILKELGDSGH-APNA----ITY 174 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 174 (410)
.......+...|++++|...+++........+.. .++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677899999999999887754322222 456667778888999999998888765211 1122 234
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----Chhh
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRK----GYT--F-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL----DIVS 243 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 243 (410)
..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++........ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 55667788889999999888887653 211 2 23345567778888899999999998887653221 1245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHH----HHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHH
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHT----ILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAY 314 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 314 (410)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66677788888999999988888765321111 11111 223446688889888888888765432111 2245
Q ss_pred HHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHH
Q 015246 315 NCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 385 (410)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 385 (410)
..+...+...|++++|...+++.... ....+..+..++...|+.++|...+++.+... ++ . ....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-~~-~----g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-NR-T----GFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH-H----CCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-cc-c----cHHH
Confidence 66677888888888888888876543 11255566777788888888888888887652 11 1 1222
Q ss_pred HHhhcCCHHHHHHHHHHHHHccC
Q 015246 386 GLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
.+...| +....+++.+....+
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 334444 566666666665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-12 Score=111.47 Aligned_cols=228 Identities=11% Similarity=-0.008 Sum_probs=171.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCC-CC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----C-CChhhH
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGY-TF----DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-----Q-LDIVSY 244 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 244 (410)
.....+...|++++|+..+++..+... .+ ...++..+..+|...|+++.|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345567889999999999999886521 12 244677888999999999999999998876411 1 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCHHHHH
Q 015246 245 NTLINLYCKEGKLEAAYLLLDEMEKQ----GFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSNLEAYN 315 (410)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 315 (410)
+.+..+|...|++++|...+.+..+. +.. ....++..+...+...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78889999999999999999988653 111 12346778899999999999999999998761 2233467788
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC-----Cc---hhHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCC-cHhhHHHH
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK-----DS---FTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRI-LKSAQKAV 383 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 383 (410)
.+..++.+.|++++|...+++.... ++ ..+..+...+...++ ..+|+..+++. +..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8999999999999999999987653 21 234455555666777 77777777763 3233 34566788
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHc
Q 015246 384 VDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 384 ~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+..|...|++++|...+++..+.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-11 Score=103.88 Aligned_cols=201 Identities=13% Similarity=-0.009 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCC---C-Chhh
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDS----GHA--P-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT---F-DGFG 208 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-~~~~ 208 (410)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34445555556666665555554331 111 1 2233444555566666666666666665543211 0 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---chHHH
Q 015246 209 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-VSYN-----TLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYTH 279 (410)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 279 (410)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 455566666677777777777666543111111 1111 12233556777777777777665432111 12234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKI----GFDSNL-EAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55666777778888877777766532 211122 25555667777888888888877766543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-12 Score=100.52 Aligned_cols=163 Identities=15% Similarity=0.037 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3334444445555555555555444332 1234444445555555555555555555554431 2334445555555555
Q ss_pred cCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHH
Q 015246 324 DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 400 (410)
.|++++|...++++... +...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555544332 34455555566666666666666666666543 344556666666666666666666666
Q ss_pred HHHHHccCC
Q 015246 401 SKIRMAKIS 409 (410)
Q Consensus 401 ~~~~~~~~~ 409 (410)
+++.+..++
T Consensus 168 ~~~~~~~~~ 176 (186)
T 3as5_A 168 KKANELDEG 176 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHcCCC
Confidence 666554443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=102.98 Aligned_cols=198 Identities=11% Similarity=-0.093 Sum_probs=152.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 282 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (410)
+.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 345677888889999999999999999999987554677777778999999999999999999999875 3366788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHccCChHHHHHHHHhhccCCch-----hHHHHHH
Q 015246 283 IDGLCKAGNIKGARLHLEYMNKIGFDSNL-------EAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVH 350 (410)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~l~~ 350 (410)
...+...|++++|...+++..+.. +.+. ..+..+...+...|++++|...|++....++. .+..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999998853 3344 45777888888999999999999998877444 5566666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
++...| ...++++...+ +.+...+... .....+.+++|...+++..+..|++
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 665443 44556665553 3334444333 2345677899999999999988864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=120.57 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=109.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 284 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (410)
+..+++.+..++.+.|++++|++.|++.++... -+...+..+..+|.+.|++++|...|++..+.. +-+...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455677777777777777777777777776532 245667777777777777777777777776653 224566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhH
Q 015246 285 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 361 (410)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 361 (410)
++...|++++|+..|++..+.. +.+...+..+..+|...|++++|+..|++..+. +...+..++.++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7777777777777777776642 334566666777777777777777777665543 455666666677777777777
Q ss_pred HHHHHHHHH
Q 015246 362 SKLLLSCLK 370 (410)
Q Consensus 362 ~~~~~~~~~ 370 (410)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-11 Score=96.36 Aligned_cols=195 Identities=14% Similarity=0.058 Sum_probs=149.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIML 108 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (410)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888889999999999999999999887654677777778999999999999999999998775 55678888999
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc---HHHHHHHH
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPEL-------VTYNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIM 178 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 178 (410)
.++...|++++|...+++..+... .+. ..|..+...+...|++++|...|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999999988632 244 45777888889999999999999999875 344 55667777
Q ss_pred HHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 179 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
.++...|+ ..++.+...+ ..+...+.... ....+.+++|...+++..+.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 77765543 3445555443 33333443332 33456789999999999886
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-11 Score=94.23 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (410)
+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3344444444455555555554444332 2334444444444445555555555554444431 1233444444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 228 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 228 (410)
.|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555444444444321 1233344444444444444444444444444432 22333444444444444444444444
Q ss_pred HHHHH
Q 015246 229 MEQMV 233 (410)
Q Consensus 229 ~~~~~ 233 (410)
++...
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-11 Score=96.22 Aligned_cols=239 Identities=9% Similarity=0.020 Sum_probs=153.9
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 188 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (410)
+-..-.|.+..++.-. .+............+.++|...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 4444578888877733 3222122223334455788888877642 12334444444444333 222
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 189 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
++..+++....+ +++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777776655 45556666777888888889998888888876543 235667777888888888888888888888
Q ss_pred HhCCCCC-----chHHHHHHHHHH--HhcC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 268 EKQGFEC-----DKYTHTILIDGL--CKAG--NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 268 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+......++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775 45 355566666553 3334 788888888888764 4543333444447888888888888887654
Q ss_pred c------------C-CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 339 V------------K-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 339 ~------------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
. + ++.+...++......|+ +|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3 2 66666666666666676 778888888765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-12 Score=114.48 Aligned_cols=168 Identities=14% Similarity=0.029 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
+.+..+|+.+...+.+.|++++|++.|++..+... -+..++..+..++.+.|++++|.+.|++.++.+ +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 33567899999999999999999999999988643 367889999999999999999999999988875 5668899999
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
..++...|++++|++.|++..+... -+...|+.+..+|...|++++|++.|++..+... -+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 9999999999999999999988643 3678899999999999999999999999888542 3577888899999999999
Q ss_pred hHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKR 199 (410)
Q Consensus 188 ~~a~~~~~~~~~ 199 (410)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-10 Score=97.81 Aligned_cols=363 Identities=7% Similarity=-0.061 Sum_probs=219.0
Q ss_pred hcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-hhHH
Q 015246 8 QFV-SFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK-PDEA 85 (410)
Q Consensus 8 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 85 (410)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 378888888888765 243 7788899999888874 3688888888777766653 4566
Q ss_pred HHHHHHHhcC-CC-CCChhHHHHHHHHHh----hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----------
Q 015246 86 NRVFQDMICG-DL-TPCTATFNIMLNGLC----KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----------- 148 (410)
Q Consensus 86 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 148 (410)
..+|+..+.. |. +.+...|...+..+. ..++.+.+..+|++........-...|......-..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 7777776653 32 346778887777654 346778888888888874221111222222211111
Q ss_pred --cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 149 --AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-------KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 149 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
.+.+..|..+++.+...-...+...|...+..-...+ ..+.+..+|+++.... +.+...|...+..+...
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 1123334444444332100013345555444422211 1344667888888764 55677788888888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------C---CCchHHHHHHHHHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---------F---ECDKYTHTILIDGLC 287 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~ 287 (410)
|+.+.|..++++.... +.+...+.. |....+.++. ++.+.+.- . ......|...+....
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 9999999999999987 333333322 2222111222 22222110 0 111244566666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHH
Q 015246 288 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASK 363 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 363 (410)
+.++.+.|..+|++. +. ...+..+|...+..-...+ +.+.|..+|+..... ++..|...+......|+.+.|..
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 778899999999988 32 1234455544333333333 699999999987664 45556667777788899999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 364 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
+|+++. .....|...+..-...|+.+.+.+++++...
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999972 2567777777777888999999998888764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-10 Score=92.20 Aligned_cols=179 Identities=11% Similarity=0.012 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 120 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+...+.++.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23444444555666666666666666666544432 1245555555666666666666666666665
Q ss_pred HcCCCC-----ChhhHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 199 RKGYTF-----DGFGYCTVIAAF--VKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 199 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
+. .| +..+...++.++ ...| ++.+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 233444444342 2223 566666666665443 23322223333356666666666666665443
Q ss_pred C-----C----CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 270 Q-----G----FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 270 ~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
. + -+-++.++..++......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 0 02244445444444444454 556666666653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-12 Score=102.56 Aligned_cols=132 Identities=15% Similarity=0.041 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CC
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRK------G-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-------VQ 238 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~ 238 (410)
++..+..++...|++++|+..++++.+. + .+....++..+..++...|++++|...+++..... .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444322 1 01122334444445555555555555555444320 01
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 239 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.....+..+...+...|++++|...++++.+. +..| ...++..+...+...|++++|...++++.+
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12334444555555555555555555555432 0011 233444555555555555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-10 Score=96.47 Aligned_cols=132 Identities=13% Similarity=-0.055 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C----h
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKGY---TF--DGFGYCTVIAAFVKI-GRLKEATDYMEQMVTDGVQL-D----I 241 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 241 (410)
+|..+..+|...|++++|+..+++..+... .+ -..++..+..+|... |++++|+..+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444444444455544444444432210 00 012334444444443 55555555555544321000 0 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK------YTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.++..+...+...|++++|...|++..+....... ..+..+..++...|++++|...+++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23444444455555555555555554443211111 0233344444444555555555444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-11 Score=102.05 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
..++..+...+...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=96.06 Aligned_cols=204 Identities=11% Similarity=-0.013 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHHcCCHHHH
Q 015246 151 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK----GYTFD-GFGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 225 (410)
++++|...|++. ...|...|++++|...|.+..+. +.+++ ..++..+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 33456677888888777776543 21111 45788889999999999999
Q ss_pred HHHHHHHHHcCCCC-C----hhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-c----hHHHHHHHHHHHhcCChhH
Q 015246 226 TDYMEQMVTDGVQL-D----IVSYNTLINLYCKE-GKLEAAYLLLDEMEKQGFEC-D----KYTHTILIDGLCKAGNIKG 294 (410)
Q Consensus 226 ~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 294 (410)
+..+++..+..... + ..++..+...|... |++++|...|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999887642110 1 34678888889886 99999999999887542110 1 3467888899999999999
Q ss_pred HHHHHHHHHhcCCCCCH------HHHHHHHHHHHccCChHHHHHHHHhhccCCch--------hHHHHHHHHH--hcCCh
Q 015246 295 ARLHLEYMNKIGFDSNL------EAYNCIVDRLGKDGKIDHAINVFESMEVKDSF--------TYSSMVHNLC--KAKRL 358 (410)
Q Consensus 295 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~--~~~~~ 358 (410)
|...+++..+....... ..+..+..++...|++++|...+++....++. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999875322211 14677788889999999999999998775322 2334455553 34567
Q ss_pred hhHHHHHHHHH
Q 015246 359 PSASKLLLSCL 369 (410)
Q Consensus 359 ~~A~~~~~~~~ 369 (410)
++|+..|+++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 78888887765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=94.20 Aligned_cols=192 Identities=8% Similarity=-0.055 Sum_probs=128.7
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CchH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE--CDKY 277 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 277 (410)
+.+...+......+.+.|++++|...|+.+.+..+. + ...+..+..++...|++++|...|+++.+.... ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345566777778888889999999999988876322 3 566777888888899999999999988876321 1244
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHH
Q 015246 278 THTILIDGLCK--------AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMV 349 (410)
Q Consensus 278 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 349 (410)
.+..+..++.. .|++++|...|+++.+.. +.+......+.. +..........+..++
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAKLARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 56677777777 888889999888888752 222222211111 1111111112245667
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCC--cHhhHHHHHHHHhhc----------CCHHHHHHHHHHHHHccCCC
Q 015246 350 HNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHS----------GCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~ 410 (410)
.++...|++++|+..|+++++..... ....+..++.+|... |++++|...++++.+..|+|
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 77888888888888888887653111 245666777777655 77888888888888777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-08 Score=90.22 Aligned_cols=345 Identities=10% Similarity=-0.070 Sum_probs=221.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHc-CC-CCChHhHHHHHHHHH----hcCCh
Q 015246 10 VSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL-LSCSLDLLDEMLEM-GI-PPDVWSYNSLMHCLF----QLGKP 82 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~ 82 (410)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. +++...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999985 5899999998888877663 46677888887764 42 236677777777554 24678
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHh-------------hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLC-------------KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
+.+.++|++.+......-...|......-. ..+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 899999999987432111223332222111 1122334444454443310011334565555443322
Q ss_pred C--C-----HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 150 G--R-----LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 150 ~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... |.+...+. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 1 345678898887743 346788888888889999999999999999988 44433222 22222111
Q ss_pred HHHHHHHHHHHHcC------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-c
Q 015246 223 KEATDYMEQMVTDG------------VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-A 289 (410)
Q Consensus 223 ~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 289 (410)
++. ++.+.+.- .......|...+....+.++.+.|..+|.++ ... ..+...|...+..-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence 111 22222210 0112245666677777788899999999999 321 2344444433322222 3
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
++.+.|..+|+...+. .+.++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 334 ~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4699999999999875 33345667777888888999999999999984 356778888887788899999999998887
Q ss_pred H
Q 015246 370 K 370 (410)
Q Consensus 370 ~ 370 (410)
.
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-10 Score=89.79 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=28.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhhcCchHHHHHHHHHHHh
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC---TATFNIMLNGLCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (410)
...+..+...+...|++++|...|+.++... +.+ ...+..+..++...|++++|...|+++.+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3344444444445555555555555544432 112 33444444444444555555544444444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.2e-10 Score=87.56 Aligned_cols=188 Identities=11% Similarity=-0.021 Sum_probs=127.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch--HHHHH
Q 015246 206 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHTI 281 (410)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 281 (410)
...+..+...+...|++++|...|+++.+..+.. ....+..+..++.+.|++++|...|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566778889999999999999998863321 1356777888999999999999999999876422111 24444
Q ss_pred HHHHHHh------------------cCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhccCCc
Q 015246 282 LIDGLCK------------------AGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 342 (410)
Q Consensus 282 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (410)
+..++.. .|++++|...|+++++. .|+ ...+...... ..+.....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l--------------~~~~~~~~ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL--------------VFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH--------------HHHHHHHH
Confidence 5555543 45667777777777664 232 2222111110 00000001
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---HhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL---KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
.....++..+...|++++|+..|+++++.. |.+ ...+..+..++.+.|++++|.+.++.+...++.|
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 122456778889999999999999999763 222 2568888999999999999999999999888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-10 Score=89.31 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=79.1
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHhcCChhhHHHHHHHHHHcCCCCChHh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNS----------------LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWS 68 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 68 (410)
.+.+.|++++|++.|++..+.. +.+...|.. +..++...|++++|+..|++..+..+ .+...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHH
Confidence 5667899999999999988764 223445544 55555555555555555555555422 24455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY--TDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
+..+..++...|++++|.+.|+++++.. |.+..++..+..++...|+ ...+...++.... ..|....+.....++
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHH
Confidence 5555555555555555555555555543 3444555555555443332 2223333333321 111112222233344
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 015246 147 CKAGRLRTARWILKELGD 164 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~ 164 (410)
...|++++|...|++..+
T Consensus 168 ~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHTHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 444555555555555554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-10 Score=82.09 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcC
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAK 356 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 356 (410)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++... +...+..++..+...|
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444555555555555544432 223344444455555555555555555544332 3345555666666777
Q ss_pred ChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 357 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
++++|.+.++++.+.. +.+...+..++..+...|++++|...++++...+++
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777776553 445666667777777777777777777777766654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-10 Score=87.18 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHH----------------HHHHHHhcCChhHHHHHHHHHhcC
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNS----------------LMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
..+......+...|++++|+..|++..+..+ .+...+.. +..++...|++++|...|++.++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444455667788888888888888877531 13334444 444455555555555555554444
Q ss_pred CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015246 96 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 147 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (410)
. +.+...+..+..++...|++++|...|++..+..+ .+..++..+..+|.
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYY 133 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3 33444444555555555555555555555544321 13444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-10 Score=79.36 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444455555555555555555554432 1234444445555555555555555555554433 3334444445555555
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 12344444444555555555555555544443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-09 Score=82.28 Aligned_cols=173 Identities=14% Similarity=0.073 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHH
Q 015246 190 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG----KLEAAYLLLD 265 (410)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 265 (410)
|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ ++..+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 44455555555556666666666666665542 34445555555554 4 5666666666
Q ss_pred HHHhCCCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHc----cCChHHHHHHHHh
Q 015246 266 EMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGK----DGKIDHAINVFES 336 (410)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 336 (410)
+..+.+ ++..+..+...|.. .+++++|..+|++..+.+.. .++..+..+...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655443 33444445555544 45555555555555554311 013444455555544 4455555555555
Q ss_pred hccC--CchhHHHHHHHHHhc-C-----ChhhHHHHHHHHHHcC
Q 015246 337 MEVK--DSFTYSSMVHNLCKA-K-----RLPSASKLLLSCLKSG 372 (410)
Q Consensus 337 ~~~~--~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~ 372 (410)
.... ++..+..+...|... | ++++|..+|++..+.|
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4432 444444444444432 1 4555555555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.8e-10 Score=104.25 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=75.7
Q ss_pred HhccchhHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 182 FRNRKYKLGLEILSAMK--------RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 182 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44455555555555554 221 3333444445555555555555555555555432 1234445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 015246 254 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 333 (410)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 333 (410)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...|+++.+.+ +.+...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555442 1134444555555555555555 55555555432 22344455555555555555555555
Q ss_pred HHhhccC
Q 015246 334 FESMEVK 340 (410)
Q Consensus 334 ~~~~~~~ 340 (410)
|+++...
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 5555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-10 Score=105.67 Aligned_cols=171 Identities=12% Similarity=-0.081 Sum_probs=93.2
Q ss_pred hhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015246 7 CQFVSFDAGYTILNRMR--------EAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ 78 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (410)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.|++..+.+. .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 34566666666666665 322 33445555566666666666666666666655422 244555556666666
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015246 79 LGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 158 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 158 (410)
.|++++|.+.|++..+.. +.+...+..+..++...|++++ ...|++..+.+. .+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655543 3445555566666666666666 666666555422 2445555566666666666666666
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHh
Q 015246 159 LKELGDSGHAPNAITYTTIMKCCFR 183 (410)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (410)
|++..+... .+...+..+..++..
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC-
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHc
Confidence 665554321 123344444444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-08 Score=80.80 Aligned_cols=220 Identities=8% Similarity=0.006 Sum_probs=123.7
Q ss_pred CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--ChhHHHHHHHHHhcCCCCCChhHHHHHHHHH----hhc---C
Q 015246 45 SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG--KPDEANRVFQDMICGDLTPCTATFNIMLNGL----CKN---R 115 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 115 (410)
...++|+++++.+...++. +..+|+.--.++...| +++++++.++.++..+ +-+..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3345777777777775422 4455666666666666 7777777777777655 55556666544444 333 5
Q ss_pred chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc------h
Q 015246 116 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR--TARWILKELGDSGHAPNAITYTTIMKCCFRNRK------Y 187 (410)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 187 (410)
++++++.+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.-.......+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 667777777777665332 6666666666666666666 66777777666543 355556555555444444 5
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH-HHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK-EATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLL 264 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 264 (410)
+++++.++.++... +-|...++.+...+.+.|+.. .+..+..++.+.+ -+.++..+..++.++.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55666666655554 445555555555555555422 2333333333221 1223444555555555555555555555
Q ss_pred HHHHh
Q 015246 265 DEMEK 269 (410)
Q Consensus 265 ~~~~~ 269 (410)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-10 Score=85.37 Aligned_cols=144 Identities=10% Similarity=-0.044 Sum_probs=94.4
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
..+...|++++|++.+....... +.+...+..+...|.+.|++++|++.|++..+... .+..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 34556777777877777766542 22334555677777778888888888877777542 35677777777777778888
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
+|...|++.++.+ +.+..++..+...+.+.|++++|.+. +++..+.. |-++..|......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8887777777664 45567777777777777777665544 46666542 2255666666665555553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-08 Score=80.60 Aligned_cols=226 Identities=9% Similarity=-0.020 Sum_probs=180.1
Q ss_pred hhhhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCChHhHHHHHHHH----H
Q 015246 5 AYCQFVSF-DAGYTILNRMREAGISPDVVTYNSLIAGATRNS--LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL----F 77 (410)
Q Consensus 5 ~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 77 (410)
+..+.|.+ ++|+++++.+...+ +-+..+|+.--.++...+ +++++++.++.+...++. +..+|+.-..++ .
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 33444444 68999999999886 556778998888888888 999999999999987543 566676655555 4
Q ss_pred hc---CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 015246 78 QL---GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGR- 151 (410)
Q Consensus 78 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 151 (410)
.. +++++++++++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+..+. |...|+.....+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 55 78999999999999877 778899998888888888888 999999999987554 88888887777777776
Q ss_pred -----HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHH
Q 015246 152 -----LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL-GLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 152 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 223 (410)
++++++.++.+....+ -|...|+.+...+.+.|.... +..+..++.+.+ -+.+...+..++.++.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 8899999998887654 478888888888888777444 555666665432 1446778888999999999999
Q ss_pred HHHHHHHHHHHc
Q 015246 224 EATDYMEQMVTD 235 (410)
Q Consensus 224 ~a~~~~~~~~~~ 235 (410)
+|.++++.+.+.
T Consensus 276 ~A~~~~~~l~~~ 287 (306)
T 3dra_A 276 ESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-09 Score=82.54 Aligned_cols=182 Identities=8% Similarity=-0.043 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh---hHHHHHH
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPP--DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT---ATFNIML 108 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~ 108 (410)
+..+...+...|++++|+..|+++.+..... ....+..+..++.+.|++++|...|+++.+.. +.+. ..+..+.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHH
Confidence 3334444555555555555555555432110 02344444555555555555555555554432 1111 1222222
Q ss_pred HHH------------------hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc
Q 015246 109 NGL------------------CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 170 (410)
Q Consensus 109 ~~~------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (410)
.++ ...|++++|...|+++.+.. +-+...+....... .+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH--------
Confidence 222 33567778888888777652 21222222211100 000000
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
......+...+.+.|++++|+..|+.+.+.. |.+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112345667788888888888888888763 222 2457777888888888888888888887753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-10 Score=85.57 Aligned_cols=163 Identities=8% Similarity=-0.046 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH-H
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG-L 111 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 111 (410)
.+......+...|++++|...|++..+.. |.+...+..+..++...|++++|...|+.+.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34456667778888888888888876643 2356777888888888888888888888876553 244433332222 1
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccchhHH
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 190 (410)
...+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345677888877653 2367778888888888888888888888887765432 355777788888888888888
Q ss_pred HHHHHHHHH
Q 015246 191 LEILSAMKR 199 (410)
Q Consensus 191 ~~~~~~~~~ 199 (410)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=83.84 Aligned_cols=81 Identities=7% Similarity=-0.155 Sum_probs=32.6
Q ss_pred HHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 106 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
.+...|.+.|++++|.+.|++..+... -+..+|..+..++...|++++|...|++..+..+ -+...+..+..++.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 344444444444444444444443311 1334444444444444444444444444433211 12333444444444444
Q ss_pred chh
Q 015246 186 KYK 188 (410)
Q Consensus 186 ~~~ 188 (410)
+++
T Consensus 114 ~~~ 116 (150)
T 4ga2_A 114 VTD 116 (150)
T ss_dssp SSS
T ss_pred ChH
Confidence 443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.8e-09 Score=80.07 Aligned_cols=141 Identities=9% Similarity=-0.039 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC----ChhHHHHHH
Q 015246 14 AGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG----KPDEANRVF 89 (410)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 89 (410)
+|++.|++..+. .++.++..+...|...+++++|.+.|++..+.| ++..+..|...|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 344555555543 244455555555555555555555555555432 34444444444444 3 455555555
Q ss_pred HHHhcCCCCCChhHHHHHHHHHhh----cCchHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 015246 90 QDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCK----AGRLRTARWILK 160 (410)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 160 (410)
++..+.+ +...+..|...|.. .+++++|..+|++..+.|.. .++..+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5554332 33344444444444 44555555555554443211 013344444444444 444444444444
Q ss_pred HHhh
Q 015246 161 ELGD 164 (410)
Q Consensus 161 ~~~~ 164 (410)
+..+
T Consensus 154 ~A~~ 157 (212)
T 3rjv_A 154 GSSS 157 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-09 Score=87.81 Aligned_cols=164 Identities=12% Similarity=-0.009 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH-HHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFN-IML 108 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 108 (410)
+...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 344444555555555555555555555555422 244455555555555555555555555554432 2222211 112
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccch
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 187 (410)
..+...++.+.|...+++..... +.+...+..+...+...|++++|...|+++....... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22334444555555555554442 2244555555555555555555555555555432211 134445555555555555
Q ss_pred hHHHHHHHHH
Q 015246 188 KLGLEILSAM 197 (410)
Q Consensus 188 ~~a~~~~~~~ 197 (410)
++|...+++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555544443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=99.68 Aligned_cols=161 Identities=9% Similarity=-0.003 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 219 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 3357888889999999999999999999998874 33677888899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhc---CChhhHHHHHHHHHHcC
Q 015246 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA---KRLPSASKLLLSCLKSG 372 (410)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 372 (410)
+++..+.. +.+...+..+..++...|++++|.+.+++.... +...+..+..++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998863 446788889999999999999999999987655 567788889999999 99999999999998775
Q ss_pred CCCcHhhHHHH
Q 015246 373 VRILKSAQKAV 383 (410)
Q Consensus 373 ~~~~~~~~~~l 383 (410)
+.+...+..+
T Consensus 159 -p~~~~~~~~l 168 (568)
T 2vsy_A 159 -VGAVEPFAFL 168 (568)
T ss_dssp -CCCSCHHHHT
T ss_pred -CcccChHHHh
Confidence 3344444333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-09 Score=85.86 Aligned_cols=166 Identities=11% Similarity=-0.003 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHH-
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT- 176 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 176 (410)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344455555556666666666666666665542 2245555666666666666666666666555432 23222211
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEG 255 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 255 (410)
....+...++.+.|+..+++..... |.+...+..+...+...|++++|...+.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 1222444555555566666555554 4445555556666666666666666666665542221 1344555555555555
Q ss_pred CHHHHHHHHHHH
Q 015246 256 KLEAAYLLLDEM 267 (410)
Q Consensus 256 ~~~~a~~~~~~~ 267 (410)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=82.34 Aligned_cols=157 Identities=13% Similarity=0.042 Sum_probs=68.3
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHH-HHhcc
Q 015246 107 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNR 185 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 185 (410)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..... |+...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3344444555555555555444321 1134444445555555555555555555444322 122221111111 11111
Q ss_pred chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 015246 186 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLL 264 (410)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 264 (410)
....++..+++..+.. |.+...+..+..++...|++++|...++++.+..+.+ +...+..+..++...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223444455544443 3334445555555555555555555555555432221 1334445555555555555555555
Q ss_pred HHH
Q 015246 265 DEM 267 (410)
Q Consensus 265 ~~~ 267 (410)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=90.48 Aligned_cols=220 Identities=10% Similarity=-0.022 Sum_probs=154.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh-ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 227 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (410)
.|++++|.+++++..+... . .+.. .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667777777776654211 1 0222 46677777666654 456788899999999
Q ss_pred HHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCc--hHHHHHHHHHHHhcCChhHHHH
Q 015246 228 YMEQMVTDGVQ-----LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---FECD--KYTHTILIDGLCKAGNIKGARL 297 (410)
Q Consensus 228 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~ 297 (410)
.+.+..+.... .-..++..+..+|...|++++|...+++..+.. -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99988764111 114577888889999999999999999876431 1122 3567788888888 99999999
Q ss_pred HHHHHHhcCCC---C--CHHHHHHHHHHHHccCChHHHHHHHHhhccC---C------chhHHHHHHHHHhcCChhhHHH
Q 015246 298 HLEYMNKIGFD---S--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D------SFTYSSMVHNLCKAKRLPSASK 363 (410)
Q Consensus 298 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~~~~~~A~~ 363 (410)
.+++..+.... + ...++..+...+...|++++|+..|++.... + ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998763111 1 1457788899999999999999999988764 1 2356667777888899999999
Q ss_pred HHHHHHHcCCCCc------HhhHHHHHHHHhhcCCHHHHHHH
Q 015246 364 LLLSCLKSGVRIL------KSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 364 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
.|++.+ . .|+ ......++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999998 4 232 12344455545 67887776663
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-09 Score=97.49 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=119.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHH
Q 015246 9 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588999999999998765 4567889999999999999999999999999864 33678899999999999999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhC
Q 015246 89 FQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA---GRLRTARWILKELGDS 165 (410)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 165 (410)
+++..+.. +.+...+..+..++...|++++|.+.+++..+... .+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 66788999999999999999999999999988643 3678888999999999 9999999999998875
Q ss_pred CC
Q 015246 166 GH 167 (410)
Q Consensus 166 ~~ 167 (410)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-09 Score=79.29 Aligned_cols=95 Identities=8% Similarity=0.007 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHH
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 352 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 352 (410)
...+..+...+...|++++|...|+++.+.. +.+...|..+..++...|++++|...|++.... ++..|..+..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3456666777777788888888887777753 445667777777777778888887777766543 666777777777
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 015246 353 CKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~ 371 (410)
...|++++|+..|+++++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7778888888777777765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-08 Score=83.01 Aligned_cols=199 Identities=7% Similarity=-0.054 Sum_probs=98.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR-NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEAN 86 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 86 (410)
..|++++|.+++++..+.. +.. +.+ .++++.|...|+.. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 4688899999999887642 110 011 34444444444433 22344455555555
Q ss_pred HHHHHHhcCCC---CC--ChhHHHHHHHHHhhcCchHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 015246 87 RVFQDMICGDL---TP--CTATFNIMLNGLCKNRYTDNALRMFRGLQKH----GFVP-ELVTYNILIKGLCKAGRLRTAR 156 (410)
Q Consensus 87 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~ 156 (410)
..|.+...... .+ -..+|+.+..+|...|++++|...|++.... |.+. ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 55544433210 00 1234455555555555555555555554331 1100 12344555555555 6666666
Q ss_pred HHHHHHhhCC----CCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHHcCCHHHHH
Q 015246 157 WILKELGDSG----HAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRK----GYTFD-GFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 157 ~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~ 226 (410)
..|++..... ..+ ...++..+..++...|++++|+..+++..+. +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6665554311 000 1344555566666666666666666665543 11111 123444555555566666666
Q ss_pred HHHHHHH
Q 015246 227 DYMEQMV 233 (410)
Q Consensus 227 ~~~~~~~ 233 (410)
..+++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.8e-09 Score=80.81 Aligned_cols=129 Identities=11% Similarity=-0.057 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566777888999999999998774 5577888889999999999999999999988763 45677888889999
Q ss_pred HccCChHHHHHHHHhhccC---Cc----------------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH
Q 015246 322 GKDGKIDHAINVFESMEVK---DS----------------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 377 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~---~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 377 (410)
...|++++|...|++.... +. ..+..++.++...|++++|...++++++. .|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 9999999999999988764 22 67888888899999999999999998855 4543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-09 Score=74.19 Aligned_cols=105 Identities=15% Similarity=0.038 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
..+......+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++.... +...|..++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456666777777777777777777777653 445666777777777777777777777766543 4556677777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
..|++++|++.|+++++.. |.+...+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 7777777777777777653 3344444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.6e-08 Score=80.76 Aligned_cols=125 Identities=13% Similarity=-0.015 Sum_probs=59.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCC-----chhHHHHHHHHHhcC
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-----SFTYSSMVHNLCKAK 356 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~ 356 (410)
+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... ...+..+..++...|
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3344445555555555555444321 222233334444555555555555555443321 124445555555555
Q ss_pred ChhhHHHHHHHHHHcCCCC--cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 357 RLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
++++|+..|++.......| ..........++.+.|+.++|..+|+++...+|
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5555555555554322112 223444445555555555555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-09 Score=86.96 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
+...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666666553 3455556666666666666666666666666542 224455556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~ 270 (410)
++...|++++|...|.+..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.2e-07 Score=73.75 Aligned_cols=173 Identities=9% Similarity=-0.028 Sum_probs=96.2
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc-C-chHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG-KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN-R-YTDN 119 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 119 (410)
+.+..++|+++++.+...+.. +..+|+.--.++...| .++++++.++.++... +-+..+|+.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344445677777777665422 4445555555555566 4677777777776655 55666666655555554 4 6667
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc-----
Q 015246 120 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR--------TARWILKELGDSGHAPNAITYTTIMKCCFRNRK----- 186 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 186 (410)
++.+++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccch
Confidence 77777776665332 5555555444444444444 56666666655433 255555555555554443
Q ss_pred --hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 015246 187 --YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 220 (410)
Q Consensus 187 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (410)
++++++.+.++.... +-|...++.+-..+.+.|
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 455556665555553 444445544444444433
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-07 Score=74.26 Aligned_cols=126 Identities=7% Similarity=-0.074 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
..+...+...|++++|...|++.. .|+...+..+..++...|++++|+..+++..+.. +.+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 334445555555555555555442 2345555555555555666666666665555543 33445555555556666
Q ss_pred CCHHHHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 220 GRLKEATDYMEQMVTDGVQL---------------DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
|++++|...++...+..... ....+..+..++...|++++|...|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666655532110 1144555566666666666666666666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-07 Score=78.50 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---Cc--hH
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-----VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE---CD--KY 277 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 277 (410)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344455566666666666666665554221110 11223334445556666666666665543111 11 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cc
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKI-GFDSN-----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DS 342 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~ 342 (410)
+++.+...|...|++++|...+++..+. ...|+ ..++..+..+|...|++++|...+++.... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5555666666666666666666665421 00111 134555555666666666666665554332 03
Q ss_pred hhHHHHHHHHHhcCChhhH-HHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSA-SKLLLSC 368 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A-~~~~~~~ 368 (410)
.+|..++.++...|++++| ...++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3455555555556665555 4445544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.8e-07 Score=73.57 Aligned_cols=127 Identities=11% Similarity=-0.061 Sum_probs=58.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC-Cc----HHHHHHHHHHHHhccchhHHHHHHHHHHHc-----CCCC-ChhhHH
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGHA-PN----AITYTTIMKCCFRNRKYKLGLEILSAMKRK-----GYTF-DGFGYC 210 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~ 210 (410)
+...+...+++++|+..+++....... ++ ..+++.+..+|...|++++|+..++++.+. +..+ ...++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 334444444555555555554442111 11 223444555555555555555555554421 1011 122445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTD----GVQLD-IVSYNTLINLYCKEGK-LEAAYLLLDEME 268 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 268 (410)
.+..+|...|++++|...+++..+. +..+. ..++..+..++...|+ +++|...+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555555555555555554432 11111 3455555555555653 455655555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-09 Score=78.29 Aligned_cols=108 Identities=11% Similarity=-0.002 Sum_probs=86.3
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-
Q 015246 262 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 340 (410)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 340 (410)
..++++.... +.+...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|++....
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555442 2245567778888899999999999999988763 457788888889999999999999999987654
Q ss_pred --CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 341 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 341 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++..+..+..++...|++++|+..|+++++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6778888999999999999999999998865
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5.6e-07 Score=74.08 Aligned_cols=162 Identities=12% Similarity=0.047 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCcH----HHHHHHHHHHHhccchhHHHHHHHHHHHcCCC-CC----hhhHHH
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGH-APNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FD----GFGYCT 211 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 211 (410)
.+..+...|++++|...+++...... .|+. ..+..+...+...+++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776322 2221 12334555666667888888888887764222 12 125677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-chHHHH
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTD-----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFEC-DKYTHT 280 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 280 (410)
+..+|...|++++|...++++.+. +..+ ...++..+..+|...|++++|...+++..+. +..+ -..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777888888888888777641 1111 1235566666777777777777777666432 1111 144566
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHH
Q 015246 281 ILIDGLCKAGN-IKGARLHLEYMN 303 (410)
Q Consensus 281 ~l~~~~~~~~~-~~~a~~~~~~~~ 303 (410)
.+..++...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666663 466766666654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-06 Score=71.19 Aligned_cols=175 Identities=9% Similarity=-0.022 Sum_probs=123.7
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC-chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHH
Q 015246 77 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR-YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA-G-RLR 153 (410)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 153 (410)
...+..++|+++++.++..+ +-+..+|+.--.++...+ .+++++..++.+.....+ +..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 34455678999999998876 667788888877777778 599999999999987544 777888777777766 6 788
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC----
Q 015246 154 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK--------LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR---- 221 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 221 (410)
++++.++.+.+... -+...|+.-..+..+.+.++ ++++.++++.+.. +.+...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 99999999887653 37777777666666666666 7777888777765 5566667666666666654
Q ss_pred ---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015246 222 ---LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 256 (410)
Q Consensus 222 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (410)
++++++.+++.....+ -|...|+-+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 5666666666666532 255555554444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.3e-07 Score=72.76 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC--hh
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-----FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ---LD--IV 242 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 242 (410)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666667777777777666654311110 11223444455566777777777666643111 11 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC-CC--chHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCC-CH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEK---QGF-EC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG----FDS-NL 311 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 311 (410)
+++.+...|...|++++|...+++..+ ... .+ ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 556666667777777777777766652 111 11 11356666666777777777777776655421 000 14
Q ss_pred HHHHHHHHHHHccCChHHH-HHHHHh
Q 015246 312 EAYNCIVDRLGKDGKIDHA-INVFES 336 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A-~~~~~~ 336 (410)
.++..+..+|.+.|++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4566666667777777776 554543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-08 Score=70.12 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+......+.+.|++++|++.|++..+.. |.+..+|..+..++...|++++|.+.|++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4567778888999999999999999988864 3367888889999999999999999999988876 6678889999999
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
+...|++++|.+.|++..+..+ .+...+..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDP-SNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHH
Confidence 9999999999999999888632 25555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-08 Score=76.20 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=91.3
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHH-HHhcCCh-
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC-LFQLGKP- 82 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 82 (410)
.+...|++++|++.++...+.. +.+...+..+...+...|++++|...|++..+... .+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence 3566788888888888887765 45677888888888888888888888888877542 356677777777 6678887
Q ss_pred -hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC
Q 015246 83 -DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 83 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (410)
++|...|+.+.... +.+...+..+..++...|++++|...++++.+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888887765 4556777778888888888888888888887753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.5e-08 Score=72.95 Aligned_cols=123 Identities=11% Similarity=-0.078 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhc
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 355 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 355 (410)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.... +...+..++.++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 3344444445555555555555544431 223444445555555555555555555544332 334455555556666
Q ss_pred CChhhHHHHHHHHHHcCCCCcHhhHHHH--HHHHhhcCCHHHHHHHHHHH
Q 015246 356 KRLPSASKLLLSCLKSGVRILKSAQKAV--VDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 403 (410)
|++++|...++++++.. +.+...+..+ +..+...|++++|.+.+++.
T Consensus 95 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666665542 2233333222 22255556666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.92 E-value=8.8e-09 Score=84.19 Aligned_cols=195 Identities=7% Similarity=-0.023 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777888888888888888888877532 366777888888888888888888888887765 556777888888
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 189 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (410)
++...|++++|...|++..+.+.. +...+...+....+. ...... ........+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 888888888888888877654210 100111111111111 111111 112222233333333333222 2577777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 015246 190 GLEILSAMKRKGYTFDGFGYCTVIAAFVKI-GRLKEATDYMEQMVT 234 (410)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 234 (410)
|++.++...+.. +.+......+...+.+. +.++++.++|..+.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777666552 22222223333333333 456677777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-08 Score=76.26 Aligned_cols=120 Identities=8% Similarity=0.063 Sum_probs=95.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCCh--
Q 015246 251 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR-LGKDGKI-- 327 (410)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 327 (410)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 456788999999999988764 3467788889999999999999999999988763 3467778888888 7788998
Q ss_pred HHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 328 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 328 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
++|...++++... +...+..+..++...|++++|...++++++..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999987654 56778888899999999999999999998763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=70.63 Aligned_cols=95 Identities=11% Similarity=0.020 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555555555555555555432 1234445555555555555555555555554443 334444455555555
Q ss_pred hcCchHHHHHHHHHHHh
Q 015246 113 KNRYTDNALRMFRGLQK 129 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~ 129 (410)
..|++++|...+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=75.89 Aligned_cols=187 Identities=7% Similarity=-0.065 Sum_probs=124.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCC---------------
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSL-------IAGATRNSLLSCSLDLLDEMLEMGIPPD--------------- 65 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 65 (410)
+.++.+.|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5789999999999999886 4567788877 4566666666666666555544 2221
Q ss_pred -------hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC--H
Q 015246 66 -------VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE--L 136 (410)
Q Consensus 66 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 136 (410)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345667778888888888888877653 433355566667778888888888887554431 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--cHHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKELGDSGHAP--NAITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356667777788888888888888776533213 2334555666777777778887777777766
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-08 Score=75.51 Aligned_cols=92 Identities=16% Similarity=0.021 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHccCChHHHHHHHHhhccC-----C----c
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKI----GFDS--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D----S 342 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~ 342 (410)
.+..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++.... + .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444444555555555554443321 1011 1223344444455555555555555443321 1 1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
.++..+..++...|++++|...+++.+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 123445555556666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.86 E-value=6.5e-09 Score=87.34 Aligned_cols=143 Identities=10% Similarity=-0.082 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--------------hHhHHHHHHH
Q 015246 10 VSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD--------------VWSYNSLMHC 75 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 75 (410)
+++++|++.|+...... +.+...+..+...+.+.|++++|+..|++..+...... ..++..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554443321 12445666677777777777777777777776532211 2445555555
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015246 76 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 155 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 155 (410)
+.+.|++++|...|++++... +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443 3344455555555555555555555555554432 12344444444455555544444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-08 Score=68.07 Aligned_cols=115 Identities=13% Similarity=-0.042 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.... +...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455566666666666666666666666542 334556666666666677777777666665543 45566667777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 352 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
+...|++++|...++++++.. +.+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777777553 334455555665555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=72.56 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
+...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|...|++.... ++..+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34556667788889999999999999988863 456788888899999999999999999987654 67788889999
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 015246 352 LCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~ 371 (410)
+...|++++|...|+++++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998865
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-07 Score=65.62 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666665542 2244555556666666666666666666655443 3445555555566
Q ss_pred HhhcCchHHHHHHHHHHHhC
Q 015246 111 LCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~ 130 (410)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-07 Score=67.07 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444445555555555555555555554432 1234444444555555555555555555544432 2334444444444
Q ss_pred HhhcCchHHHHHHHHHHHh
Q 015246 111 LCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (410)
+...|++++|...+++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=73.62 Aligned_cols=133 Identities=11% Similarity=-0.075 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC--
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRK----GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-- 239 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-- 239 (410)
...+..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444444444444444444444444331 00 111223444444555555555555555544432 0000
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---FECD--KYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 12234444445555555555555555543210 0111 1223444555555555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=67.28 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|+++.|...+++..... +.+...+..+..++...|++++|.+.++...... +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455555566666666666666666665542 2244555555666666666666666666655443 3344555555555
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 556666666666665555442 1234444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-07 Score=66.40 Aligned_cols=97 Identities=6% Similarity=-0.100 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
..+..+...+.+.|++++|+..|+++.... |.+...|..+..++...|++++|...|++..+..+ .++..+..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHH
Confidence 344455555556666666666666665554 44555555556666666666666666666655422 2445555555566
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 015246 252 CKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~ 270 (410)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=9.6e-08 Score=80.20 Aligned_cols=84 Identities=10% Similarity=-0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+..+..++.+.|++++|+..++++... +...|..+..++...|++++|+..|+++++.. +.+...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555544332 33444555555555555555555555555442 334444555555555
Q ss_pred hcCCHHHH
Q 015246 389 HSGCRREA 396 (410)
Q Consensus 389 ~~g~~~~a 396 (410)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555555
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.1e-08 Score=68.91 Aligned_cols=95 Identities=15% Similarity=-0.018 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHH
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 352 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 352 (410)
...+......+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++.... +...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4456677777888888888888888887753 445677777888888888888888888876654 556777777888
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 015246 353 CKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~ 371 (410)
...|++++|+..|+++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888887754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.2e-07 Score=63.75 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=34.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 255 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 255 (410)
.+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+..++...|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 33333334444444444444433332 2223333333334444444444444444433321 112333333333444444
Q ss_pred CHHHHHHHHHHHH
Q 015246 256 KLEAAYLLLDEME 268 (410)
Q Consensus 256 ~~~~a~~~~~~~~ 268 (410)
++++|...++++.
T Consensus 92 ~~~~A~~~~~~~~ 104 (125)
T 1na0_A 92 DYDEAIEYYQKAL 104 (125)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-08 Score=72.25 Aligned_cols=97 Identities=12% Similarity=-0.025 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|...|+....... .+...+..+..++...|++++|.+.|++....+ +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34455555555666666666666666555432 245555555556666666666666666655543 3444555555555
Q ss_pred HhhcCchHHHHHHHHHHHh
Q 015246 111 LCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (410)
+...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-08 Score=72.16 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|+..+++.... +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888889999999999999999998863 446788889999999999999999999988765 66788889999
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 015246 352 LCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~~ 372 (410)
+...|++++|+..|+++++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999998763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.2e-06 Score=67.90 Aligned_cols=172 Identities=8% Similarity=-0.022 Sum_probs=95.4
Q ss_pred HhcCCHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015246 147 CKAGRLR-TARWILKELGDSGHAPNAITYTTIMKCCFRNRK----------YKLGLEILSAMKRKGYTFDGFGYCTVIAA 215 (410)
Q Consensus 147 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (410)
.+.|.++ +|+..++.+...++ -+...|+.--.+....+. +++++.+++.+...+ |-+..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455554 67888877776542 244445544333333332 456666777666654 5556666666666
Q ss_pred HHHcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc---
Q 015246 216 FVKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA--- 289 (410)
Q Consensus 216 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 289 (410)
+...+ ++++++.+++.+.+..+. +...|+.-..++...|. ++++++.+..+.+.++ -|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhc
Confidence 66666 367777777777765332 55556555555556666 4667777777766542 2555555554444433
Q ss_pred -----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 290 -----------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 290 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
+.+++++..+....... +-|...|+.+-..+.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 23455555555555542 3344555444443333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.8e-07 Score=64.58 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=33.9
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 256 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (410)
+...+...|++++|...+++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..++...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 3333334444444444444433332 2223333333333444444444444444433321 1123333333333444444
Q ss_pred HHHHHHHHHHHH
Q 015246 257 LEAAYLLLDEME 268 (410)
Q Consensus 257 ~~~a~~~~~~~~ 268 (410)
+++|...+++..
T Consensus 96 ~~~A~~~~~~~~ 107 (131)
T 2vyi_A 96 HVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-05 Score=65.52 Aligned_cols=236 Identities=8% Similarity=-0.077 Sum_probs=146.7
Q ss_pred hcCChh-hHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------hhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 43 RNSLLS-CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK----------PDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 43 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
+.|.++ +|+++++.+...++. +..+|+.--.++...+. +++++.+++.+...+ +-+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445544 678888887775322 33444443333333222 567778888877665 66777777776666
Q ss_pred hhcC--chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc----
Q 015246 112 CKNR--YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-LRTARWILKELGDSGHAPNAITYTTIMKCCFRN---- 184 (410)
Q Consensus 112 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 184 (410)
...+ .+++++.+++.+.+.... |..+|+.-.-++...|. ++++++.++.+.+..+ -|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence 6666 377888888888776433 67777776666677776 4778888887777543 3666666655554443
Q ss_pred ----------cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCh-h
Q 015246 185 ----------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI-----------GRLKEATDYMEQMVTDGVQLDI-V 242 (410)
Q Consensus 185 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~-~ 242 (410)
+.++++++.+....... |-|...|+-+-..+.+. +.++++++.++++.+. .|+. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENKW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccccch
Confidence 45778888888888775 55666665444444443 3578888888888885 3443 2
Q ss_pred hHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 015246 243 SYNTLIN---LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 286 (410)
Q Consensus 243 ~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (410)
.+..++. .....+..+++...+.++.+.. +....-|..+...+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 2222221 2224567788888999888763 22334454444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.2e-08 Score=68.70 Aligned_cols=95 Identities=11% Similarity=-0.105 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 015246 314 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 390 (410)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (410)
+..+...+.+.|++++|...+++.... +...|..+..++...|++++|+..|+++++.+ +.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344455566666666666666665543 45556666666667777777777777766653 34556666666677777
Q ss_pred CCHHHHHHHHHHHHHccCC
Q 015246 391 GCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 391 g~~~~a~~~~~~~~~~~~~ 409 (410)
|++++|...++++.+.+|+
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 7777777777776665554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.2e-08 Score=66.04 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--cHhhHHHHHH
Q 015246 311 LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVD 385 (410)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 385 (410)
...+..+...+...|++++|...+++.... +...+..+..++...|++++|...++++++.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345555666666677777777766665543 45566777777777888888888888877653 34 5677777777
Q ss_pred HHhhc-CCHHHHHHHHHHHHHccCC
Q 015246 386 GLRHS-GCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 386 ~~~~~-g~~~~a~~~~~~~~~~~~~ 409 (410)
++... |++++|.+.++++....++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 88888 8888888888888777665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-07 Score=64.92 Aligned_cols=108 Identities=16% Similarity=-0.006 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
....+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.... +...+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34567777888888889999988888888753 446777788888888888888888888877654 56677778888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 352 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
+...|++++|...+++..+.+ +.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 888888888888888888653 33444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-07 Score=67.34 Aligned_cols=97 Identities=7% Similarity=-0.204 Sum_probs=80.9
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHH
Q 015246 274 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVH 350 (410)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 350 (410)
.+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++.... ++..+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 456778888888999999999999999988763 445778888888999999999999998887654 5677888888
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 015246 351 NLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++...|++++|...|+++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 899999999999999988865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.4e-07 Score=63.54 Aligned_cols=96 Identities=15% Similarity=0.037 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.++.+ +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344555555556666666666666655542 2244555555555666666666666665555543 33455555555555
Q ss_pred hhcCchHHHHHHHHHHHh
Q 015246 112 CKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~ 129 (410)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555666666555555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=75.32 Aligned_cols=130 Identities=12% Similarity=-0.031 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----------------hhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC----------------TATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
..+..+...+...|++++|.+.|++..... +.+ ...+..+..++...|++++|...+++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344445555555555555555555555432 111 255666666677777777777777776665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH-HHHHHHHH
Q 015246 131 GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL-EILSAMKR 199 (410)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 199 (410)
. +.+...+..+..++...|++++|...|++...... .+...+..+..++...++..++. ..+..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 23556666667777777777777777777665432 24555666666666666665555 44444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-06 Score=60.24 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..... +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344445555555555555555555555432 1234445555555555555555555555554433 33344445555555
Q ss_pred hhcCchHHHHHHHHHHHhC
Q 015246 112 CKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~ 130 (410)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=9e-07 Score=62.43 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=25.3
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
.+...+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|+..+++.+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444444444444444432 3333344444444444444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.4e-07 Score=62.87 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C-------chhHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D-------SFTYSS 347 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~ 347 (410)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.... + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555556666666666666655542 233455555666666666666666666555432 1 124566
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 382 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (410)
++.++...|++++|++.|++.++. .|++.+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 777788888888888888888764 456554433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4e-07 Score=65.81 Aligned_cols=99 Identities=14% Similarity=-0.031 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
+...+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...+++..+.. +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34455566677788888888888888887764 3366677777888888888888888888887763 445667777888
Q ss_pred HHHccCChHHHHHHHHhhccC
Q 015246 320 RLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~ 340 (410)
++...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888776554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-07 Score=61.73 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC--ChhHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP--CTATFNIMLN 109 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 109 (410)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555555432 1234445555555555555555555555555443 22 3445555555
Q ss_pred HHhhc-CchHHHHHHHHHHHhC
Q 015246 110 GLCKN-RYTDNALRMFRGLQKH 130 (410)
Q Consensus 110 ~~~~~-~~~~~a~~~~~~~~~~ 130 (410)
++... |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-06 Score=74.23 Aligned_cols=193 Identities=7% Similarity=0.010 Sum_probs=106.8
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDG----------------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD 240 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 240 (410)
...+.+.|++++|++.+..+.+....... ..+..+...|...|++++|.+.+..+...... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567778888888888888776422111 12556677777777777777777766543111 11
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CC--
Q 015246 241 I----VSYNTLINLYCKEGKLEAAYLLLDEMEK----QGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GF-- 307 (410)
Q Consensus 241 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 307 (410)
. .+.+.+...+...|+++.|..++..... .+..+ ...++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222333445667777777666542 12111 2345566667777777777777777665432 11
Q ss_pred -CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-----C-----chhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 308 -DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D-----SFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 308 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
+....++..++..|...|++++|..++++.... + ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111345555666666666666666666654432 1 12334444445556666666666666543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=5e-07 Score=69.54 Aligned_cols=85 Identities=8% Similarity=-0.099 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+..+..++...|++++|...+++.... +...+..+..++...|++++|+..|+++++.. +.+...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 44555555566666666666666655433 44455666666666666666666666666543 334555555555555
Q ss_pred hcCCHHHHH
Q 015246 389 HSGCRREAK 397 (410)
Q Consensus 389 ~~g~~~~a~ 397 (410)
..|+.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-07 Score=66.75 Aligned_cols=64 Identities=13% Similarity=-0.062 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-------CCCCcHhhH----HHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKS-------GVRILKSAQ----KAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
.|..+..++...|++++|+..++++++. + +.+...| ...+.++...|++++|+..|++..+..|
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6777777777777777777777777764 3 3345667 7777888888888888888888776554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.7e-07 Score=64.66 Aligned_cols=110 Identities=19% Similarity=-0.008 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSS 347 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 347 (410)
+...+..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|...+++.... +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4567778888888999999999999998875 454 577788888888899999999888877654 5667788
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
+..++...|++++|...|+++++.. +.+...+..+....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 8888888999999999999888763 33455554444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.8e-07 Score=63.63 Aligned_cols=92 Identities=9% Similarity=-0.018 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHhhccC---C---chhHHHHH
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL---EAYNCIVDRLGKDGKIDHAINVFESMEVK---D---SFTYSSMV 349 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~ 349 (410)
+..+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++++... + +..+..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4456677888899999999999888753 2233 47777888888899999999988887654 3 45577788
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 015246 350 HNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.++...|++++|...|+++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999999988876
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-06 Score=62.22 Aligned_cols=98 Identities=13% Similarity=0.021 Sum_probs=74.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 315 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 315 (410)
+...+..+...+...|++++|...|++..+.. |+ ...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45667777778888888888888888887763 34 5667777778888888888888888877752 34567777
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7888888888888888888876554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=4e-06 Score=73.24 Aligned_cols=199 Identities=9% Similarity=-0.062 Sum_probs=144.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCc----------------HHHHHHHHHHHHhccchhHHHHHHHHHHHcCC-CC
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGHAPN----------------AITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TF 204 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 204 (410)
-.+.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+... .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35677889999999999999988644321 12467788999999999999999998875411 11
Q ss_pred Chh----hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 015246 205 DGF----GYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GF- 272 (410)
Q Consensus 205 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 272 (410)
+.. +.+.+...+...|+++.+..+++..... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 2223333444668999999999887653 2222 2456778899999999999999999988643 11
Q ss_pred -CC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 273 -EC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 273 -~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+ ....+..+++.|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 2457888899999999999999999987642 11111 345666777888999999999998877655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-06 Score=62.10 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C-------chhHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D-------SFTYSS 347 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~ 347 (410)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.... + ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555556666666666666655542 334455555666666666666666666655433 2 456677
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
++.++...|++++|.+.++++++. .|+......+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 778888888888888888888865 34555555444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-06 Score=61.42 Aligned_cols=97 Identities=7% Similarity=-0.017 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
+...+..+...+...|++++|...|+....... .+...+..+..++...|++++|...++...... +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 344455555555555555555555555554321 234445555555555555555555555554433 333444444555
Q ss_pred HHhhcCchHHHHHHHHHHH
Q 015246 110 GLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~ 128 (410)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555554444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-06 Score=60.90 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----hhhHHHH
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ--LD----IVSYNTL 247 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 247 (410)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++........ ++ ...+..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444444432 223334444444444444444444444444432110 00 2333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 015246 248 INLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
..++...|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-06 Score=65.10 Aligned_cols=128 Identities=16% Similarity=0.058 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cchh
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFD-SN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFT 344 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~ 344 (410)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++.... ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444445555555544444331000 00 123444555555556666655555554332 1234
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC-cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+..+..++...|++++|...+++.++. +.++ ....+..+...+...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556666777777777777777766533 1111 2345666777788888888888888776653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-06 Score=62.31 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
..+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|+..+++..+.. +.+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444445555555555555555555443 3344444455555555555555555555555442 12344445555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 015246 252 CKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~ 270 (410)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.6e-07 Score=79.86 Aligned_cols=119 Identities=12% Similarity=0.110 Sum_probs=91.7
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
..+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+... .+..++..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 45678899999999999998875 45678888899999999999999999999888642 36778888888999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHH--HhhcCchHHHHHHHH
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNG--LCKNRYTDNALRMFR 125 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 125 (410)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999888764 4445556656555 778888888988887
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.2e-07 Score=65.51 Aligned_cols=98 Identities=12% Similarity=-0.046 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--------G---------FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
....+......+.+.|++++|...|.+.++. . -+.+...+..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888899999999999999998764 0 0112356777788888888888888888877
Q ss_pred ccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 338 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 338 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
... ++..|..++.++...|++++|...|+++++..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 654 56678888888888888888888888888663
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-07 Score=82.09 Aligned_cols=158 Identities=8% Similarity=-0.093 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 015246 10 VSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVF 89 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 89 (410)
+++++|++.|+...... +.....+..+...+.+.|++++|+..|++..+....... + . .+...+ .
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~----------~-~~~~~~-~ 312 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L----------S-EKESKA-S 312 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C----------C-HHHHHH-H
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C----------C-hHHHHH-H
Confidence 34445554444333321 123446666677777777777777777777664211110 0 0 000000 0
Q ss_pred HHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015246 90 QDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (410)
. +....+|..+..++.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...|++..+... .
T Consensus 313 ~-------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~ 383 (457)
T 1kt0_A 313 E-------SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-Q 383 (457)
T ss_dssp H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence 0 0002344445555555555555555555554432 12444455555555555555555555555544321 1
Q ss_pred cHHHHHHHHHHHHhccchhHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
+...+..+..++.+.++++++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444444555544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-06 Score=60.14 Aligned_cols=92 Identities=11% Similarity=-0.067 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR 115 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (410)
.+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...|++.++.. +.+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344455555555555555555555422 244555555555555555555555555555543 334455555555555555
Q ss_pred chHHHHHHHHHHHh
Q 015246 116 YTDNALRMFRGLQK 129 (410)
Q Consensus 116 ~~~~a~~~~~~~~~ 129 (410)
++++|...+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=64.51 Aligned_cols=93 Identities=9% Similarity=-0.054 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cch
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF 343 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~ 343 (410)
.+..+...+...|++++|...+++..+. +.++ ....+..+...+...|++++|...+++.... ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555555555555555554431 0000 1234445555666666666666666554432 133
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
.+..+...+...|++++|.+.+++.++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456667777778888888888877664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.8e-06 Score=57.96 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=43.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHH
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDV---WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC---TATFNIMLNGL 111 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 111 (410)
...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+.+.... +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34444555555555555555443211 12 244444555555555555555555554432 222 33444455555
Q ss_pred hhcCchHHHHHHHHHHHhC
Q 015246 112 CKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~ 130 (410)
...|++++|...|+.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.8e-07 Score=62.07 Aligned_cols=84 Identities=17% Similarity=0.027 Sum_probs=66.6
Q ss_pred hcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHH
Q 015246 288 KAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++.... ++..+..+..++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688899999999998853 1334677888889999999999999999988755 6678888899999999999999
Q ss_pred HHHHHHHHc
Q 015246 363 KLLLSCLKS 371 (410)
Q Consensus 363 ~~~~~~~~~ 371 (410)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998866
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.1e-07 Score=62.31 Aligned_cols=87 Identities=9% Similarity=-0.034 Sum_probs=58.2
Q ss_pred hcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 8 QFVSFDAGYTILNRMREAG--ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+... .+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3577778888888877653 123455677777777778888888888877777643 2566677777777777788877
Q ss_pred HHHHHHHhcC
Q 015246 86 NRVFQDMICG 95 (410)
Q Consensus 86 ~~~~~~~~~~ 95 (410)
.+.|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.5e-07 Score=79.91 Aligned_cols=119 Identities=13% Similarity=-0.028 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 015246 247 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 326 (410)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (410)
+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445667788888888888887763 2356677778888888888888888888887753 3456677777777888888
Q ss_pred hHHHHHHHHhhccC---CchhHHHHHHH--HHhcCChhhHHHHHHH
Q 015246 327 IDHAINVFESMEVK---DSFTYSSMVHN--LCKAKRLPSASKLLLS 367 (410)
Q Consensus 327 ~~~A~~~~~~~~~~---~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 367 (410)
+++|.+.+++.... +...+..+..+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888877776543 44555555555 6677777777777763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.40 E-value=3.2e-06 Score=74.19 Aligned_cols=121 Identities=12% Similarity=-0.079 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------hHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--------------KYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555666666677777777777776665421111 3455556666666666666666666666542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHH
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
+.+...+..+..+|...|++++|...|+++... +...+..+..++...++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666666655544 4445555555555555555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.8e-07 Score=75.48 Aligned_cols=149 Identities=15% Similarity=0.008 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015246 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 320 (410)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (410)
...+..+...+.+.|++++|...|.+.... .|+... +...++..++...+ . ...+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 455666777778888888888888887765 333321 11112222221111 0 1245556666
Q ss_pred HHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH-HhhcCCHHHH
Q 015246 321 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG-LRHSGCRREA 396 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 396 (410)
|.+.|++++|+..+++.... +...|..+..++...|++++|+..|+++++.. +.+...+..+... ....+..+.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665443 44556666666666677777776666666432 2233344444433 2334555666
Q ss_pred HHHHHHHHHccCC
Q 015246 397 KKIQSKIRMAKIS 409 (410)
Q Consensus 397 ~~~~~~~~~~~~~ 409 (410)
...|.++....+.
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 6666666555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.1e-06 Score=71.11 Aligned_cols=89 Identities=11% Similarity=-0.054 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
+...|..+..+|.+.|++++|+..++++... +...+..+..++...|++++|+..|+++++.. +.+...+..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3566777888888888888888888887765 56678888888999999999999999988764 4466777777777
Q ss_pred HhhcCCHHHHHHH
Q 015246 387 LRHSGCRREAKKI 399 (410)
Q Consensus 387 ~~~~g~~~~a~~~ 399 (410)
+...++.+++.+.
T Consensus 351 ~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5.8e-05 Score=67.86 Aligned_cols=169 Identities=9% Similarity=-0.063 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC--
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK----------LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-- 290 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 290 (410)
++|.+.++.+...++. +...|+.--.++...|+ ++++++.++.+.+...+ +...|..-..++.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 4555555555554222 33444444444444444 66677777777665432 5556666666666666
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHhhccC---CchhHHHHHHHHHhc-----------
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAINVFESMEVK---DSFTYSSMVHNLCKA----------- 355 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----------- 355 (410)
++++++..++++.+.. +-+...|+.-..++.+.| .++++++.++++... +..+|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 5577777777777653 345666766666666666 677777777777665 555666666555542
Q ss_pred ---CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHH
Q 015246 356 ---KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 395 (410)
Q Consensus 356 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (410)
+.++++++.+++++... |-+...|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688999999988774 5577888888888877776443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=68.40 Aligned_cols=137 Identities=7% Similarity=-0.117 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
.+..+...+.+.|++++|++.|++..+.- +... .... .+...... +.+..+|..+..++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45666777778888888888887776520 0000 0000 00000010 223344555555555
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555442 12444555555555555555555555555554321 13444444444544445444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-05 Score=57.56 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 207 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
..+..+..+|.+.|++++|+..++..++.. +.+...|..+..++...|++++|...|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 345555555556666666666665555542 224455555555556666666666666555554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-05 Score=55.76 Aligned_cols=110 Identities=12% Similarity=-0.064 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHH
Q 015246 255 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHA 330 (410)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 330 (410)
+++++|...|++..+.+ .|+.. +...|...+.+++|..+|++..+.| +......+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777776665 22222 5555555566666777777666653 44555566666665 5666667
Q ss_pred HHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHHHHHcC
Q 015246 331 INVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 331 ~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 372 (410)
...|++..+. ++..+..+...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666555 56666666666666 666666666666666655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.8e-06 Score=73.66 Aligned_cols=94 Identities=10% Similarity=-0.012 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC-----------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC-C
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-----GV-R 374 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~ 374 (410)
.+++.+..+|...|++++|..++++.... ...+++.|+..|...|++++|+.+++++++. |. .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555555555555555543322 1223555555555566666555555554421 21 1
Q ss_pred Cc-HhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 375 IL-KSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 375 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
|+ ..+...+..++...|++++|..++.++++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22333444455556666666666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00015 Score=65.23 Aligned_cols=172 Identities=9% Similarity=-0.061 Sum_probs=121.5
Q ss_pred CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc
Q 015246 45 SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK----------PDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 114 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (410)
...++|++.++.+...+.. +..+|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3446778888888876432 45566666666666666 788888888888776 66778888877788888
Q ss_pred C--chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc-------
Q 015246 115 R--YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRN------- 184 (410)
Q Consensus 115 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 184 (410)
+ +++++++.++++.+.... +..+|+....++.+.| .++++++.++++.+..+ -+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887443 7778877777777777 78888888888877543 3666777666655542
Q ss_pred -------cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 015246 185 -------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 221 (410)
Q Consensus 185 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (410)
+.++++++.+..+.... |.+...|......+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 45677777777777664 5566666665555555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.9e-06 Score=68.92 Aligned_cols=146 Identities=15% Similarity=0.038 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 015246 206 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 285 (410)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (410)
...+..+...+.+.|++++|...|++.... .|+.. .+...++.+++...+ ....+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 345667777888899999999999998875 23322 123334444443322 12367888889
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH-HHhcCChhhH
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN-LCKAKRLPSA 361 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~A 361 (410)
+.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++... +...+..+... ....+..+.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 446788999999999999999999999998766 45556666555 3345667888
Q ss_pred HHHHHHHHHc
Q 015246 362 SKLLLSCLKS 371 (410)
Q Consensus 362 ~~~~~~~~~~ 371 (410)
...|.++...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899988754
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=6.3e-05 Score=53.67 Aligned_cols=112 Identities=9% Similarity=-0.056 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhH
Q 015246 9 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LGKPDE 84 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 84 (410)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +......|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 345666666666666655 22222 4455555555566666666665542 44555555555555 555666
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhh----cCchHHHHHHHHHHHhCC
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 131 (410)
|.++|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666555443 23444445555554 455555555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.1e-05 Score=55.18 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C-----C-----hHhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIP-P-----D-----VWSYNSLMHCLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 94 (410)
..+......+.+.|++++|+..|++..+.... | + ...|..+..++.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555666677788888888888887775322 0 1 11455555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=59.77 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc------HhhHHH
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL------KSAQKA 382 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~ 382 (410)
..+..+...+...|++++|...|++.... ++..+..+..++...|++++|+..++++++.. +.+ ...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 34444445555555555555555544332 34445555555555666666666666555432 112 334444
Q ss_pred HHHHHhhcCCHHHHHH
Q 015246 383 VVDGLRHSGCRREAKK 398 (410)
Q Consensus 383 l~~~~~~~g~~~~a~~ 398 (410)
+..++...|+.++|..
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 4444444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.9e-06 Score=56.08 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+.+...+++..+.. +.+...+..+...+...|++++|...+++.... +...|..+..++...|++++|...|++++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45778888888753 456788888999999999999999999987755 56678889999999999999999999988
Q ss_pred Hc
Q 015246 370 KS 371 (410)
Q Consensus 370 ~~ 371 (410)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.2e-05 Score=67.81 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV--QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGF-EC 274 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~ 274 (410)
+++.+..+|...|++++|..++++.++. |. +....+++.+...|...|++++|..++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444445555544444444321 11 11123344444455555555555555444432 111 11
Q ss_pred c-hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 275 D-KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 275 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
+ ..+...+..++...+.+++|...+.++.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12233344444455555555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-06 Score=59.43 Aligned_cols=68 Identities=12% Similarity=-0.039 Sum_probs=36.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH----------HHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 287 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID----------HAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
.+.+.+++|...++...+.. +.+...|..+..++...++++ +|+..|++.... +..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34455666777777666653 345666666666666655443 444444444333 3334444444444
Q ss_pred hc
Q 015246 354 KA 355 (410)
Q Consensus 354 ~~ 355 (410)
..
T Consensus 92 ~l 93 (158)
T 1zu2_A 92 SF 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.96 E-value=5.3e-05 Score=49.35 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+..+...+...|++++|...+++.... +...+..+..++...|++++|...++++++.. +.+...+..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555566666666666554432 44456666666677777777777777766553 334555555555554
Q ss_pred hc
Q 015246 389 HS 390 (410)
Q Consensus 389 ~~ 390 (410)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.8e-05 Score=50.93 Aligned_cols=79 Identities=16% Similarity=0.042 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
.|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555554443 3444555555555555555555555555555442 2234455555555555566665555555554
Q ss_pred h
Q 015246 164 D 164 (410)
Q Consensus 164 ~ 164 (410)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.1e-05 Score=51.24 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++.+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455556666666666666666666666543 224555666666666666666666666666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.7e-05 Score=51.32 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCcHhhHHHHH
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRILKSAQKAVV 384 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~ 384 (410)
.+...+..+..++...|++++|...|++.... ++..|..+..++...|++++|++.|++.++.. -.++......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 45677888888888888888888888877654 56678888888888888888888888887542 123444444444
Q ss_pred HHHhh
Q 015246 385 DGLRH 389 (410)
Q Consensus 385 ~~~~~ 389 (410)
..+..
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=5.2e-05 Score=54.49 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=58.9
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh----------hHHHHHHHHHHcCCCCChHhHHHHHHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLS----------CSLDLLDEMLEMGIPPDVWSYNSLMHC 75 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (410)
..+.+++++|++.++...+.. +.+...|..+..++...++++ +|+..|++..+.+.. +..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 346677888888888888876 567778887888887776654 677777776665322 45566666666
Q ss_pred HHhcC-----------ChhHHHHHHHHHhcC
Q 015246 76 LFQLG-----------KPDEANRVFQDMICG 95 (410)
Q Consensus 76 ~~~~~-----------~~~~a~~~~~~~~~~ 95 (410)
|...| ++++|.+.|++.++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 66553 555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00014 Score=47.23 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.|++..... +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666655542 1244455555555556666666666665555443 3334444444433
Q ss_pred H
Q 015246 111 L 111 (410)
Q Consensus 111 ~ 111 (410)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.70 E-value=5e-05 Score=50.49 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHccCChHHHHHHHHhhccC---Cch-hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 318 VDRLGKDGKIDHAINVFESMEVK---DSF-TYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
...+...|++++|...++++... +.. .+..+..++...|++++|++.|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33445555555555555554433 334 5555566666666666666666666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00013 Score=62.95 Aligned_cols=60 Identities=10% Similarity=-0.092 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCC-cHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKS-----G-VRI-LKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
+++.++.+|...|++++|+.+++++++. | -.| ...+++.++..|..+|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444455555555555555555444321 1 011 1234455555555555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00039 Score=60.02 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=44.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC-----------CchhH
Q 015246 284 DGLCKAGNIKGARLHLEYMNKI---GFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTY 345 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~ 345 (410)
..+...|++++|...+++..+. -+.|+ ..+++.++.+|...|++++|..++++.... ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344556666666666655532 01111 334555555666666666666555544322 12245
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+.+...|...|++++|+.++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555555666666666666555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00033 Score=46.37 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=54.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHh-hHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 347 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKS-AQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 347 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
..+..+...|++++|+..++++++.. +.+.. .+..++.++...|++++|.+.|+++.+.++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 35667889999999999999999874 55667 88999999999999999999999999888764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0018 Score=53.75 Aligned_cols=140 Identities=11% Similarity=-0.015 Sum_probs=65.7
Q ss_pred CCCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHh---cC-Ch-hHH---HHHHHHH
Q 015246 237 VQLDIVSYNTLINLYC--KEG---KLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCK---AG-NI-KGA---RLHLEYM 302 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-~~-~~a---~~~~~~~ 302 (410)
.+.+...|...+++.. ..+ +..+|..+|++..+. .|+ ...+..+..++.. .+ .. ... ...++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 4556777777776543 222 346778888888776 333 3344444444321 00 00 000 1111111
Q ss_pred Hh-cCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCC--chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhh
Q 015246 303 NK-IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD--SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 379 (410)
Q Consensus 303 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 379 (410)
.. ...+.++..+..+...+...|++++|...++++...+ ...|..+...+.-.|++++|.+.|+++... .|...+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 11 0113344445555444445566666666666555442 222334444555556666666666555544 344444
Q ss_pred H
Q 015246 380 Q 380 (410)
Q Consensus 380 ~ 380 (410)
|
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00077 Score=43.91 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 308 DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
++++..+..+..++...++ .++|..++++.... ++.....+...+...|++++|+..|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567777777777754444 68888888877655 55667777788888888888888888888664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0048 Score=51.18 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 169 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455554444444556666666666555553 4444444555555555666666666655555
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.001 Score=44.50 Aligned_cols=62 Identities=11% Similarity=-0.059 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccC----------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+..-...+...+...|++..|...++..... ....+..+..++.+.|+++.|...++++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445556677777777777777777765432 2345667777777777777777777777755
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00088 Score=47.61 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHhhccCC-----chhHHHHHHHHHhcCChhhHHH
Q 015246 292 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINVFESMEVKD-----SFTYSSMVHNLCKAKRLPSASK 363 (410)
Q Consensus 292 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~ 363 (410)
...+.+.|.+..+.+ +++..+...+..++.+.+ +.++++.+++.....+ ...+..+..++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555544 356666666777777766 4557777776665443 3345566666777777777777
Q ss_pred HHHHHHHc
Q 015246 364 LLLSCLKS 371 (410)
Q Consensus 364 ~~~~~~~~ 371 (410)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777755
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.019 Score=54.49 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=114.3
Q ss_pred HHHHhcCCHHHHHH-HHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 144 KGLCKAGRLRTARW-ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 144 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
......+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 33445777777766 44221 1122236666777778888877765531 11 112334567888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ +..+...+...|+.+....+.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888875433 3677888899999999999999988887753 334555555577776666555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH----h
Q 015246 303 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK----S 378 (410)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ 378 (410)
...| -+.....+|.+.|++++|.+++ .+.+++++|..+-+.. .|.. .
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~~-----~~~~~~i~~ 784 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGSTY-----GLGDNEVND 784 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHHT-----TCCHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHHh-----CCChHHHHH
Confidence 5433 1233445566677777776654 4566677777666553 2232 3
Q ss_pred hHHHHHHHHhhcCCHHHH
Q 015246 379 AQKAVVDGLRHSGCRREA 396 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a 396 (410)
....+...+...|+.+.|
T Consensus 785 ~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 785 IVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHhccchhHH
Confidence 444444445566654433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00068 Score=58.45 Aligned_cols=83 Identities=7% Similarity=-0.079 Sum_probs=55.5
Q ss_pred hcCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC-----------CchhHHHHH
Q 015246 288 KAGNIKGARLHLEYMNKI---GFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMV 349 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~ 349 (410)
..|++++|..++++.++. -+.|+ ..+++.+..+|...|++++|..++++.... ...+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777777765532 11122 355677777777788888877777765532 234577788
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 015246 350 HNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~ 370 (410)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.002 Score=55.66 Aligned_cols=86 Identities=8% Similarity=-0.103 Sum_probs=42.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC---CCCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C-CCCC-HHHHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQG---FECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKI-----G-FDSN-LEAYN 315 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 315 (410)
.+...|++++|..++++..+.. +.|+ ..+++.++.+|...|++++|+.++++++.. | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3444556666666665554321 1111 234555555566666666666666554421 1 1111 23445
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 015246 316 CIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~ 335 (410)
.+...|...|++++|..+++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 55555666666666655554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0021 Score=45.70 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=54.7
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCh
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNS---LLSCSLDLLDEMLEMGIP-PDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 82 (410)
........+.+-|.+..+.| +++..+.-.+..++++.+ ++++++.+++...+.+.+ .+...+-.+.-++.+.|++
T Consensus 9 l~~~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 33445556666666666555 356666666666777766 555777777777765411 1344555566666777777
Q ss_pred hHHHHHHHHHhcC
Q 015246 83 DEANRVFQDMICG 95 (410)
Q Consensus 83 ~~a~~~~~~~~~~ 95 (410)
++|.+.++.+++.
T Consensus 88 ~~A~~y~~~lL~i 100 (152)
T 1pc2_A 88 EKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.027 Score=53.39 Aligned_cols=154 Identities=11% Similarity=0.029 Sum_probs=93.9
Q ss_pred HHHHhcCChhhHHH-HHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 39 AGATRNSLLSCSLD-LLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 39 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
......+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. |. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34446778888766 44221 1122336677777888888888776521 11 112334567888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 197 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (410)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888875432 3677888888888888888888888887754 344555555566666655555555
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 015246 198 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 231 (410)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (410)
...| -++....+|.+.|++++|.+++.+
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443 123333445556666666655543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00072 Score=57.57 Aligned_cols=208 Identities=11% Similarity=0.013 Sum_probs=110.5
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
|.+..+.|++++-+..+.-.++. ..++..=+.|+-+|++.++..+-.+++ ..|+..-...+.+-|...|.+
T Consensus 90 i~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lY 160 (624)
T 3lvg_A 90 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMY 160 (624)
T ss_dssp HHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCH
Confidence 44445555555555554444433 223333345666666666655433332 124444455555666666666
Q ss_pred hHHHHHHHHHhcCC--------------------CCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015246 83 DEANRVFQDMICGD--------------------LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL 142 (410)
Q Consensus 83 ~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (410)
+.|.-+|..+.... -..++.+|.-+-.+|...+++.-|...--.+.-. ..-...+
T Consensus 161 eAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~el 235 (624)
T 3lvg_A 161 DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEEL 235 (624)
T ss_dssp TTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGG
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHH
Confidence 66655555442110 0235567777777777777766655544333321 1112234
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-CCCC------ChhhHHHHHHH
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTF------DGFGYCTVIAA 215 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 215 (410)
+..|-..|.+++-+.+++.-... .......|+.|.-.|++- ++++..+.++..-.+ +++. ....|..++-.
T Consensus 236 v~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfL 313 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 313 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHH
Confidence 55566777777777777776642 234666777777666654 455554444433221 2221 23456677777
Q ss_pred HHHcCCHHHHH
Q 015246 216 FVKIGRLKEAT 226 (410)
Q Consensus 216 ~~~~~~~~~a~ 226 (410)
|.+-.+++.|.
T Consensus 314 Y~~ydE~DnA~ 324 (624)
T 3lvg_A 314 YDKYEEYDNAI 324 (624)
T ss_dssp HHHHTCHHHHH
T ss_pred HhcchhHHHHH
Confidence 77777777654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0062 Score=39.56 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMI 93 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~ 93 (410)
...+...+...|++++|...|+.+.
T Consensus 46 ~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 46 LSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.095 Score=38.29 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=47.8
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455555555555443 1455566666666666666666665555433 333344444455555444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 229 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 229 (410)
++-+.....| -++....++...|+++++.+++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 4444433332 1233333444455555555555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.043 Score=40.07 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=68.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
+......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 44556777888887777665 2566788888888888888888888777542 33455556666777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
++..++-+.....|- ++.....+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 766666666555532 233344555677788877777554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.074 Score=36.53 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=101.7
Q ss_pred hhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 242 VSYNTLINL--YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 242 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
.+...|+.+ +.-.|..++..++..+..... +..-++.++--....-+-+-..++++.+-+. + |
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D--------- 70 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D--------- 70 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C---------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-c--C---------
Confidence 344455554 445688888888888887652 5556777776666666666666666665442 1 1
Q ss_pred HHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHH
Q 015246 320 RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
...+|+.......+-.+. .+.......+..+...|+-++-.+++..++.. -+|++.....+..+|.+.|+..+|.++
T Consensus 71 -is~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 71 -LDKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp -GGGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -cHhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 123444444444443322 24556666778888999999999999886554 478889999999999999999999999
Q ss_pred HHHHHHccC
Q 015246 400 QSKIRMAKI 408 (410)
Q Consensus 400 ~~~~~~~~~ 408 (410)
+.++-+.|+
T Consensus 148 l~~AC~kG~ 156 (172)
T 1wy6_A 148 LIEACKKGE 156 (172)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhh
Confidence 999888775
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.022 Score=37.91 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC------CCCChHhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMG------IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 94 (410)
...+-.+...+...|++..|...|+...+.. ..+...++..+..++.+.|+++.|...++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555555555665555555554421 112234444555555555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.01 Score=40.57 Aligned_cols=85 Identities=13% Similarity=0.020 Sum_probs=55.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH---HHHHHHhhccCC-c----hhHHHHHHHHHhcCC
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH---AINVFESMEVKD-S----FTYSSMVHNLCKAKR 357 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~----~~~~~l~~~~~~~~~ 357 (410)
-........+.+.+......| .++..+-..+..++.+...... ++.+++.+...+ + .....+..++.+.|+
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 333444555566666555544 3666777777777777776555 777777766553 2 345556667777888
Q ss_pred hhhHHHHHHHHHHc
Q 015246 358 LPSASKLLLSCLKS 371 (410)
Q Consensus 358 ~~~A~~~~~~~~~~ 371 (410)
+++|.+.++.+++.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.58 E-value=0.52 Score=44.55 Aligned_cols=150 Identities=11% Similarity=0.001 Sum_probs=66.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCchHHH--HHHHHHHHhcC
Q 015246 215 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN--LYCKEGKLEAAYLLLDEMEKQGFECDKYTH--TILIDGLCKAG 290 (410)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 290 (410)
.+...|+.+....++..+.+.. +......++. ++...|+.+.+..+++.+.... .|....- ..+.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666555431 2222222222 3335566666666666655431 1221111 12233455566
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-CchhHHHHHHH--HHhcCCh-hhHHHHHH
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHN--LCKAKRL-PSASKLLL 366 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~--~~~~~~~-~~A~~~~~ 366 (410)
+......++..+... ...+..-...+.-++...|+.+.+.++++.+... ++.+-.....+ ....|+. .+++..+.
T Consensus 575 n~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 575 NNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp CHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 655555566665543 1122222222222333445555555555544433 33333322222 2223333 45566666
Q ss_pred HHH
Q 015246 367 SCL 369 (410)
Q Consensus 367 ~~~ 369 (410)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 664
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.058 Score=42.98 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHcCCCCC---hHhHHHHHHHHHh-----cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc-Cch
Q 015246 47 LSCSLDLLDEMLEMGIPPD---VWSYNSLMHCLFQ-----LGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN-RYT 117 (410)
Q Consensus 47 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 117 (410)
...|..++++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566667776664 344 4567777777777 377888888888777664222366667777777774 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 015246 118 DNALRMFRGLQKHGFV 133 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~ 133 (410)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888877776544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.48 E-value=2.3e-05 Score=66.37 Aligned_cols=245 Identities=17% Similarity=0.143 Sum_probs=146.5
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
.+..|..|..+....+.+.+|++-|- + ..|+..|..++.+..+.|.+++-...+...++..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 45667788888888888777766542 2 34556777888888889999988888887776533 3344457888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC--------------------CCC
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--------------------YTF 204 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 204 (410)
+|++.++..+..+++. .||..-...+..-|...|.++.|.-+|..+..-. -..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888776554442 2565556677788888888888877776653211 012
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 284 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (410)
++.||..+..+|...+.+.-|.-.--.++- .+.-...++..|-..|-+++.+.+++.-.... .....+|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 455666666666666665555443333321 12222344555666666666666666655321 334556666666
Q ss_pred HHHhcCChhHHHHHHHHHHhc-CCC------CCHHHHHHHHHHHHccCChHHHH
Q 015246 285 GLCKAGNIKGARLHLEYMNKI-GFD------SNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
.|++- ++++..+.++....+ +++ -....|..++..|.+-.++|.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65543 344444444332211 111 12345666666666666666553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.068 Score=37.55 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015246 115 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (410)
++.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666777776665542222 5555555666666777777777777766655443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.13 Score=36.11 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 015246 254 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 309 (410)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (410)
.++.++|.++|+.+...+-.- ...+....+--.+.|+...|.+++...+..+..|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 356666777776665442222 4444444444556777777777777776655333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.16 Score=34.90 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 167 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 167 (410)
.....+..+...|..++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444455555555555555555433 2344555555555555555555555555555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.062 Score=42.83 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-C
Q 015246 10 VSFDAGYTILNRMREAGISPD---VVTYNSLIAGATR-----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL-G 80 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 80 (410)
+....|...+++..+.. |+ -..|..+...|.. -|+.++|.+.|++..+.+..-+..++......++.. |
T Consensus 177 ~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 44678888899998875 55 5689999999998 499999999999999975433478888889988884 9
Q ss_pred ChhHHHHHHHHHhcCCCC--CChhHHHH
Q 015246 81 KPDEANRVFQDMICGDLT--PCTATFNI 106 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~--~~~~~~~~ 106 (410)
+.+.+.+.+++.+..... |+....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999999987554 55444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.099 Score=35.71 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=11.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
+.-++.+.|+++.|.+.++.+++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444555555554444444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.15 Score=35.46 Aligned_cols=64 Identities=6% Similarity=0.031 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHccCChH---HHHHHHHhhccC----CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 308 DSNLEAYNCIVDRLGKDGKID---HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.|+..+-..+..++.+....+ +++.+++.+... .......+..++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566677667777777766543 556666665543 2334555666777788888888888877765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.095 Score=35.97 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHccCCh---HHHHHHHHhhccC----CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 307 FDSNLEAYNCIVDRLGKDGKI---DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
-.|+..+-..+..++.+..+. ..++.+++.+... ....+..+..++.+.|++++|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 356666666667777766654 3456666655443 2334556666777777777777777777744
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.12 E-value=2.3 Score=40.36 Aligned_cols=254 Identities=10% Similarity=-0.040 Sum_probs=137.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC--CCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCC-------CChhhHH--HHH
Q 015246 145 GLCKAGRLRTARWILKELGDSG--HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-------FDGFGYC--TVI 213 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~--~l~ 213 (410)
+....|+.++++.+++.....+ -.+....-..+.-+....|..+++...+.......-. +....-. .+.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556788888888887765421 1122233333444455566656677777776654210 1111111 222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH--HHHHhc
Q 015246 214 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN--TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI--DGLCKA 289 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~ 289 (410)
.++...++ +++.+.+..+..... +...... .+...+.-.|+.+....++..+.+.. +..+...++ -++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 23333344 455555555554311 1111122 23334556788888888888776542 333333333 445578
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHccCChHHHHHHHHhhccC-Cchh--HHHHHHHHHhcCChhhHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEA--YNCIVDRLGKDGKIDHAINVFESMEVK-DSFT--YSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~A~~~ 364 (410)
|+.+.+..+.+.+... ..|.... ...+.-+|+..|+.....+++..+... +..+ ...+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999999998888764 1222221 123445677888987777788887755 2222 22333344557777777787
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHhhcCCH-HHHHHHHHHHHH
Q 015246 365 LLSCLKSGVRILKSAQKAVVDGLRHSGCR-REAKKIQSKIRM 405 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 405 (410)
+..+.+.+ .|....-..+.-+....|.. .++...++++..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77666543 44443333333334444443 567777777653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=1.8 Score=37.60 Aligned_cols=187 Identities=12% Similarity=0.044 Sum_probs=95.5
Q ss_pred cCchHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH----Hhc
Q 015246 114 NRYTDNALRMFRGLQKH-----GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC----FRN 184 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 184 (410)
.++++.|++.+-.+.+. +..........++..|...|+++...+.+..+....... ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37788888877666542 233456667778888888898888877776665432221 12222333322 122
Q ss_pred cchhHHHHHHHHHHHc--CCCCC--------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---hhhHHHHHH
Q 015246 185 RKYKLGLEILSAMKRK--GYTFD--------GFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQLD---IVSYNTLIN 249 (410)
Q Consensus 185 ~~~~~a~~~~~~~~~~--~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~ 249 (410)
...+.... ...... .+... ......+...+...|++.+|.+++..+... +..+. ...+...++
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22221111 111111 00111 111234566666777777777777776543 11111 234455556
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEK----QGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|-+.|.++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66667777777766666532 111111 1234444555556666666666665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.73 E-value=2 Score=42.46 Aligned_cols=131 Identities=18% Similarity=0.130 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG----FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
.-|..++..+.+.+.++.+.++-....+...+.+. ..|..+...+...|++++|...+-.+..... -...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34555566666666666666665555543211111 1345555666666666666666655554322 23444555
Q ss_pred HHHHHhcCC------------HHHHHHHHHHHHh-C-CCCCchHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 015246 248 INLYCKEGK------------LEAAYLLLDEMEK-Q-GFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNK 304 (410)
Q Consensus 248 ~~~~~~~~~------------~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 304 (410)
+...+..|. .++..+++..-.+ . .+...+.-|..|-.-+...|++..| ..+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 554444433 3344444433211 1 1111223344444445566666654 445555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.45 Score=43.99 Aligned_cols=53 Identities=6% Similarity=-0.203 Sum_probs=37.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 350 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
..+...|+++-|+++.++++..- |.+..+|..|..+|...|+++.|.-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44556777777777777777552 445777777777777777777777776655
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.57 Score=43.32 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=42.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 283 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
..-+...|+++.|+.+-++.... .+.+-.+|..|..+|...|+++.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33456778888888888888775 34457788888888888888888888888775
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=94.19 E-value=0.66 Score=29.95 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
-+..+-++.+....+.|++.+....+.+|.+.+++..|.++|+.+..+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666666666666666655443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.55 Score=39.91 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=65.0
Q ss_pred chHHHHHHHHHH---HhcCChhHHHHHHHHHHhc--CCC-CCH------------------HHHHHHHHHHHccCChHHH
Q 015246 275 DKYTHTILIDGL---CKAGNIKGARLHLEYMNKI--GFD-SNL------------------EAYNCIVDRLGKDGKIDHA 330 (410)
Q Consensus 275 ~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~~~-~~~------------------~~~~~l~~~~~~~g~~~~A 330 (410)
|...|..++... ...|+.+.+...++++... |.. ++. .....++..+...|++++|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 555566655443 2458889999999888764 211 111 0112334455566777777
Q ss_pred HHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCcHhhHHHH
Q 015246 331 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK-----SGVRILKSAQKAV 383 (410)
Q Consensus 331 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 383 (410)
...+..+... +...|..++.++.+.|+..+|++.|+++.+ .|+.|++.+-...
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 7666655443 455677777777777777777777766542 3677766655433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.92 E-value=3.7 Score=40.67 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 318 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 318 (410)
-|..++..+.+.+.++.+.++-....+.....+. ..|..++..+...|++++|...+-.+..... -...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3566666777777777777666655543211111 2466677777777777777777766654322 233455555
Q ss_pred HHHHccCCh------------HHHHHHHHhhcc-C-----CchhHHHHHHHHHhcCChhhHHH-HHHHHHH
Q 015246 319 DRLGKDGKI------------DHAINVFESMEV-K-----DSFTYSSMVHNLCKAKRLPSASK-LLLSCLK 370 (410)
Q Consensus 319 ~~~~~~g~~------------~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~ 370 (410)
...+..|.. ++..+++..--. . .+..|..|-.-+...|++..|.. +|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 544444433 333333332111 1 23345555555667777765554 4555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.24 Score=42.10 Aligned_cols=77 Identities=8% Similarity=0.025 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhc-----CCCCCChhHHHHH
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC-----GDLTPCTATFNIM 107 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 107 (410)
+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.. .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 55667888889999999999999988763 44788999999999999999999999988754 3888988776544
Q ss_pred HHH
Q 015246 108 LNG 110 (410)
Q Consensus 108 ~~~ 110 (410)
-..
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.57 E-value=3.3 Score=35.86 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=32.7
Q ss_pred CChhhHHHHHHHHHHc-----CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 45 SLLSCSLDLLDEMLEM-----GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6677777766555542 23334556677777777888887777766655543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.24 E-value=1 Score=29.04 Aligned_cols=48 Identities=6% Similarity=-0.066 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.-+..+-++.+....+.|++......+++|.+.+++..|.++++-+..
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555556666566666666666666666666666666666666654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.18 E-value=1.2 Score=31.97 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHccCChHHHHHHHHhhccC------Cch
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIG-FDSN-------LEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSF 343 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~ 343 (410)
++..-++.+...|.++.|+.+.+.+.... ..|+ ..++..+.+++...|++..|...|++.... +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445666777788888877777654321 1222 124566667777777777777777764322 111
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
....+. ....... ......+.+.-..+..+|.+.|++++|+.+++.+
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 110000 0000000 0011223344455667778888888888877765
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.13 E-value=1.4 Score=31.71 Aligned_cols=61 Identities=5% Similarity=-0.081 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDI-------VSYNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
.+..-+..+...|.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445556666677777766666654431 11221 134555566666667777776666653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.03 E-value=1.5 Score=30.18 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 239 LDIVSYNTLINLYCKEGKL---EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
|+..+--.+..++++..+. ..++.++.++.+.+..-....+-.+..++.+.|+++.|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444555554433111233344444555555555555555555555
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=92.31 E-value=1.6 Score=30.02 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 294 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+..+-++.+....+.|++.+....+.+|.+.+++..|.++|+-+..+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44555555556666677777777777777777777777777665544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.81 E-value=2.2 Score=29.32 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 258 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
-+..+-++.+....+.|++......+++|.+.+++..|.++++-++.. ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 345555666666666777777777777777777777777777766643 2333444555443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=9.2 Score=34.74 Aligned_cols=76 Identities=9% Similarity=-0.040 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 70 NSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 70 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
..-+..+.+.+++......+.. .+.+...-.....+....|+..+|......+-..|.. .+.....++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHC
Confidence 3445556667777666654432 1444444445566677777777777666666555432 344555555555554
Q ss_pred CC
Q 015246 150 GR 151 (410)
Q Consensus 150 ~~ 151 (410)
|.
T Consensus 150 g~ 151 (618)
T 1qsa_A 150 GK 151 (618)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.76 E-value=0.93 Score=35.62 Aligned_cols=114 Identities=10% Similarity=0.034 Sum_probs=72.3
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----HhHHHHHHHHHh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDV----WSYNSLMHCLFQ 78 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 78 (410)
+..+.+.|++++|++....-++.. |.|...-..+++.+|-.|++++|.+-++...+.. |+. ..|..+|++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH---
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH---
Confidence 345778899999999998888775 6678888889999999999999999988888753 333 234444432
Q ss_pred cCChhHHHHHHHHHhcCCCCC-----ChhHHHHHHHHHh--hcCchHHHHHHHHHHHh
Q 015246 79 LGKPDEANRVFQDMICGDLTP-----CTATFNIMLNGLC--KNRYTDNALRMFRGLQK 129 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 129 (410)
...=.++..-+-.| ...-...++.+.. ..|+.++|..+-.++.+
T Consensus 78 -------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11111222221111 1222333444333 45788888887777754
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.31 E-value=3.4 Score=28.84 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=28.0
Q ss_pred CChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 239 LDIVSYNTLINLYCKEGKL---EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
|+..+--.+..++.+..+. .+++.+++++.+.+..-.....-.+..++.+.|+++.|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333333344444443322 23444444444332111223333344445555555555555555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.15 E-value=6.6 Score=31.93 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHH
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVH 350 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 350 (410)
-++.....+...|.+.|++.+|...|-.....++..+..++.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 356667777777777777777777664222223444444433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.88 E-value=8.3 Score=32.65 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCC---cHHHHHHHHHHHHhc-cchhHHHHHHHHHHHcCCCCChhhH-
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDS-GHAP---NAITYTTIMKCCFRN-RKYKLGLEILSAMKRKGYTFDGFGY- 209 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 209 (410)
......|...|.+.|+.++..+++...... +..| .......++..+... +..+.-.++..+..+.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345667888899999999988888876542 1111 233445566666543 22333333333333221 1111222
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchH
Q 015246 210 -----CTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKY 277 (410)
Q Consensus 210 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 277 (410)
..++..|...|++.+|.+++..+.+.=...| ..++..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2466777777888888777777766411111 223444455667777777777777766432 1223332
Q ss_pred HHHH----HHHHHH-hcCChhHHHHHHHHH
Q 015246 278 THTI----LIDGLC-KAGNIKGARLHLEYM 302 (410)
Q Consensus 278 ~~~~----l~~~~~-~~~~~~~a~~~~~~~ 302 (410)
.... -...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2211 122344 567777776666554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.95 E-value=13 Score=32.11 Aligned_cols=98 Identities=14% Similarity=-0.027 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC-CCChhhHHH---
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TFDGFGYCT--- 211 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~--- 211 (410)
+...+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.++...-. .++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667788888888888888888887663 2223355666777788888888888888887754311 122211111
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 212 -VIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 212 -l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
-+..+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 112233567888888777766544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.78 E-value=12 Score=30.75 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHH
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVF 334 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (410)
-++.....+...|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34555566666666666666666655
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.31 E-value=14 Score=31.85 Aligned_cols=99 Identities=9% Similarity=-0.157 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCChhhHHHH-
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTL- 247 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l- 247 (410)
.+...+...|.+.|+++.|.+.+.++..... ..-...+...++.+...+++..+...+.++...- ..++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788899999999999999999987632 2234467778888999999999999999886541 11232222221
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhC
Q 015246 248 ---INLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 248 ---~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22345678999999888877543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.75 E-value=15 Score=30.13 Aligned_cols=192 Identities=10% Similarity=0.075 Sum_probs=105.3
Q ss_pred cCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 9 FVSFDAGYTILNRMREAGIS----PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
.+++++.++-++.-.+.|-. --..+|.++..-|.+.+++++|++++-.-.. .+.+.|+...
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~s 73 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGS 73 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcch
Confidence 45666777777777776621 1234677788888889999999888755322 2333344433
Q ss_pred HHHH----HHHHhcCCCCCChhHHHHHHHHHhhcCchH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHH
Q 015246 85 ANRV----FQDMICGDLTPCTATFNIMLNGLCKNRYTD-NALRMFRGLQ----KHG--FVPELVTYNILIKGLCKAGRLR 153 (410)
Q Consensus 85 a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~ 153 (410)
+-++ ++-..+.++++|......++..+......+ .=..+++++. +.| ..-++.....+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 3332 233334455666666666666555443211 1122222222 112 3346677778888888888888
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 154 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
+|...|- . |..+....+..++.-+...+...+ .+...... +--|...++...|..+++...
T Consensus 154 ~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 154 AAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARA-VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence 8887772 2 333444666555554444333221 12222222 233555678888888776655
Q ss_pred H
Q 015246 234 T 234 (410)
Q Consensus 234 ~ 234 (410)
+
T Consensus 215 ~ 215 (336)
T 3lpz_A 215 S 215 (336)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.50 E-value=3.4 Score=32.54 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=41.0
Q ss_pred HHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 319 DRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
....+.|++++|+.....-.+. |...-..++..+|-.|++++|.+-++.+.+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4466788888888877765554 6667777888888889999998888888765
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.44 E-value=8.5 Score=24.80 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=24.6
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 76 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
+...|++++|..+.+... .||...|..|.. .+.|..+++...+..+...
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 445556666555544433 455555544432 2445555555555555444
|
| >3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=80.99 E-value=23 Score=29.48 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=14.0
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHH
Q 015246 105 NIMLNGLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~ 128 (410)
..++.-|...++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 345555666666666666666543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.67 E-value=9.2 Score=24.70 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=24.3
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 76 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
+...|++++|..+.+... .||...|..|.. .+.|..+++...+..+...
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 444555555555554433 455555544432 2445555555555454444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 410 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 37/325 (11%), Positives = 81/325 (24%), Gaps = 13/325 (4%)
Query: 50 SLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI-ML 108
+ ++ P + L FQ + D + I + A N+ +
Sbjct: 18 AERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV 76
Query: 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA 168
K F+ + + A + +
Sbjct: 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 169 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 228
+ + L+ + + G F G + A +
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV-----FNAQGEIWLAIHH 191
Query: 229 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 288
E+ VT + +Y L N+ + + A H L +
Sbjct: 192 FEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYE 249
Query: 289 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM 348
G I A ++ +AY + + L + G + A + + + S+
Sbjct: 250 QGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Query: 349 VHN---LCKAKRLPSASKLLLSCLK 370
+ + + A +L L+
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALE 333
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.002
Identities = 33/309 (10%), Positives = 84/309 (27%), Gaps = 7/309 (2%)
Query: 27 ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEAN 86
+P + S + + P + Y +L L G + A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 87 RVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146
+ + + + ++ R + + ++ ++ L
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV--AWSNLGCVF 179
Query: 147 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG 206
G + A ++ Y + R + +
Sbjct: 180 NAQGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 207 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266
+ + + + G + A D + + +Y L N ++G + A
Sbjct: 239 V-HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEA-EDCYN 295
Query: 267 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 326
+ + L + + GNI+ A ++ F A++ + L + GK
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGK 354
Query: 327 IDHAINVFE 335
+ A+ ++
Sbjct: 355 LQEALMHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 410 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.47 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.45 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.42 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.41 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.41 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.4 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.38 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.34 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.33 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.32 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.06 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.86 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.82 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.75 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.68 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.64 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.56 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.55 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.54 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.43 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.39 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.37 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.36 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.21 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.17 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.15 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.08 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.02 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.97 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.9 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.8 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.56 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.54 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.04 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.03 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.77 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.23 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.98 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.48 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 94.38 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.31 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.56 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.2e-26 Score=193.94 Aligned_cols=381 Identities=11% Similarity=0.033 Sum_probs=318.0
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
+-..+.+.|++++|++.++++.+.. |.+..++..+..++...|++++|...+++..+..+ .+..++..+..++...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 3456889999999999999999875 45688899999999999999999999999988643 367889999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+++|.+.+....... +.+..............+....+............ ................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHH
Confidence 999999999988765 55556666666666666666666666666655433 3555556666777888888888888888
Q ss_pred HhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh
Q 015246 162 LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 241 (410)
..... +.+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...++.....+ +.+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 77643 3356778888899999999999999999998875 5567788889999999999999999999998864 3467
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
..+..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++..... .+.+...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHH
Confidence 778888999999999999999999998874 335778889999999999999999999998876 466788889999999
Q ss_pred HccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 322 GKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
...|++++|...+++..+. ++.++..++.++...|++++|+..|+++++.. |-+...+..++.+|.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998765 56688899999999999999999999999763 4467889999999988876
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.2e-24 Score=186.31 Aligned_cols=365 Identities=12% Similarity=0.013 Sum_probs=303.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 116 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (410)
+...+.+.|++++|.+.++++.+.. |-+..++..+..++...|++++|.+.|+++++.. |.+..++..+..++...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4556778999999999999998864 3367889999999999999999999999998875 6678899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHH
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (410)
+++|...+........ .+..............+....+............ ................+....+...+..
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHH
Confidence 9999999999988643 3555555566666666666666666665555433 3444455556666778888888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 015246 197 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 276 (410)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 276 (410)
..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+.+....+ +.+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 87765 5567778888899999999999999999998863 3367788889999999999999999999998875 3466
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
..+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++..... +...+..+..++.
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 778888999999999999999999998863 445788999999999999999999999987655 6678888899999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
..|++++|++.|+++++.. |.+..++..++.+|.+.|++++|...|+++.+.+|+|
T Consensus 317 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998763 4467889999999999999999999999999988865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.9e-16 Score=128.74 Aligned_cols=226 Identities=8% Similarity=-0.016 Sum_probs=156.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 015246 141 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 220 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (410)
.....+.+.|++++|...|+++.+..+ -+...|..+..++...|++++|...+.+..+.. |.+...+..+..++...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 456678899999999999999988643 357788888899999999999999999988875 556777888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHHHH
Q 015246 221 RLKEATDYMEQMVTDGVQLDIVS----------------YNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTILI 283 (410)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 283 (410)
++++|.+.++...... |+... ....+..+...+.+.+|...+.+..+... .++...+..+.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 9999999999888752 22111 01111223334456666666666654422 22445566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhh
Q 015246 284 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPS 360 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 360 (410)
..+...|++++|...+++..... +.+...|..+..++...|++++|.+.|++.... ++.+|..++.+|...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 258 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE 258 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence 67777777777777777766642 334566666777777777777777777765543 55566667777777777777
Q ss_pred HHHHHHHHHHc
Q 015246 361 ASKLLLSCLKS 371 (410)
Q Consensus 361 A~~~~~~~~~~ 371 (410)
|++.|+++++.
T Consensus 259 A~~~~~~al~l 269 (323)
T d1fcha_ 259 AVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=9.1e-15 Score=120.99 Aligned_cols=242 Identities=11% Similarity=0.000 Sum_probs=114.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
...+.+.|++++|+..|+++.+..+ .+..+|..+..++...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 3344455555555555555555321 134455555555555555555555555554433 33444455555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 197 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (410)
++|.+.++...... |+............ ...+.......+..+...+.+.++...+.+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 55555555554431 11100000000000 0000000111112223334455555555555
Q ss_pred HHcCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 015246 198 KRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 276 (410)
Q Consensus 198 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 276 (410)
.+... ..+...+..+...+...|++++|...+++...... .+...|..+..++...|++++|...+++..+.. +-+.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccH
Confidence 54321 22334455555566666666666666666655422 244555556666666666666666666665542 1234
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
..+..+..+|...|++++|+..|++.++
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555566666666666666666665554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=6.4e-11 Score=98.83 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHH
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSS 347 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~ 347 (410)
......+...|+++.|...++...+..... ....+..+..++...|++++|...+++.... ...++..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 333444455555555555555544321111 1222333455555556666665555544321 2334555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc----CCCC----cHhhHHHHHHHHhhcCCHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKS----GVRI----LKSAQKAVVDGLRHSGCRREAKK 398 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~a~~ 398 (410)
+..++...|++++|.+.++++++. |... ....+..++..+...|+.+++.+
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 556666666666666666665432 2111 11233444555566666655544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.7e-10 Score=96.25 Aligned_cols=165 Identities=12% Similarity=-0.010 Sum_probs=82.9
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC----ChhhH
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRKGY----TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQL----DIVSY 244 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~ 244 (410)
..+...+...|+++.+...+........ ......+......+...++...+...+....... ... ....+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 3344455555555555555555543311 1112223334444555556665555555444320 000 11223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCCC-HHHHHH
Q 015246 245 NTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYTHTILIDGLCKAGNIKGARLHLEYMNK----IGFDSN-LEAYNC 316 (410)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ 316 (410)
......+...|+++.|...+.......... ....+..+..++...|++++|...++.+.. .+..|+ ...+..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 344445566666666666666654432211 122344456666667777777776666542 122232 344556
Q ss_pred HHHHHHccCChHHHHHHHHhhcc
Q 015246 317 IVDRLGKDGKIDHAINVFESMEV 339 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~ 339 (410)
+..+|...|++++|.+.+++...
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677777777777777765543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=8.7e-11 Score=95.68 Aligned_cols=217 Identities=7% Similarity=-0.040 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc--------------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015246 152 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK--------------YKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 217 (410)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (410)
.+.+..+|+++... .+.+...|...+..+...++ .+++..++++..+...+.+...+...+....
T Consensus 32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34566677776653 22345566655555443332 3556666666665433444455556666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHhcCChhHHH
Q 015246 218 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG-LCKAGNIKGAR 296 (410)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 296 (410)
..|+++.|..+++.+...........|...+....+.|+.+.|.++|.++.+.+.. +...+...+.. +...|+.+.|.
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~ 189 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence 66777777777777665432222345666666666667777777777766655322 33333333322 23346666677
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C----chhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 297 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D----SFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
.+|+.+.+. .+.+...|..++..+.+.|+++.|+.+|++.... + ...|...+..-...|+.+.+..+++++.
T Consensus 190 ~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 190 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777766654 3444566666666666667777777776665443 1 1245555655556666666666666665
Q ss_pred Hc
Q 015246 370 KS 371 (410)
Q Consensus 370 ~~ 371 (410)
+.
T Consensus 269 ~~ 270 (308)
T d2onda1 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.6e-10 Score=92.86 Aligned_cols=196 Identities=8% Similarity=0.007 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG-KPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
+++.+...+.+.+.+++|+++++++.+.++. +..+|+....++...| ++++|...++.++... +-+..+|+.+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 4444444455555555555555555554221 3344454444444443 3555555555554443 44455555555555
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc-----
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK----- 186 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 186 (410)
.+.|++++|+..++++.+... .+...|..+...+...|++++|+..++++.+..+ .+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence 555555555555555555422 2455555555555555555555555555555322 234444444433333322
Q ss_pred -hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 187 -YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 187 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
+++|++.+..+.+.. |.+...+..+...+.. ...+++...++...+
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 345555555555443 3344444444333322 223444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=1.5e-10 Score=94.27 Aligned_cols=185 Identities=11% Similarity=0.024 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 197 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (410)
++|..+|++..+...+.+...|..++....+.|+++.|..+|+.+...........|...+....+.|+++.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34444444444332222333344444444444444444444444443322222233444444444444444444444444
Q ss_pred HHcCCCCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCc
Q 015246 198 KRKGYTFDGFGYCTVIAA-FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECD 275 (410)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 275 (410)
.+.. +.+...+...... +...|+.+.|..+|+.+... .+.+...|...+..+...|+.+.|..+|++..... ..|.
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 4332 2222222222221 12234445555555544443 22234444444444445555555555555544432 1111
Q ss_pred --hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 276 --KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 276 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
...|...+.--...|+.+.+..+++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12344444433444555555555544433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.7e-10 Score=91.90 Aligned_cols=216 Identities=9% Similarity=0.005 Sum_probs=163.5
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC-chHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR-YTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
...++.+...+.+.+.+++|+++++.+++.+ |-+..+|+....++...| ++++|+..++...+.... +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 3456677777888899999999999999886 677788888888888766 589999999999886433 7888999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC---
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR--- 221 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 221 (410)
.+.+.|++++|+..++++.+... .+...|..+..++...|++++|++.++.+++.+ +.+...|+.+..++.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 99999999999999999988543 368889999999999999999999999999886 5667778777777666554
Q ss_pred ---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHH
Q 015246 222 ---LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLC 287 (410)
Q Consensus 222 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 287 (410)
+++|...+....+.. +.+...|..+...+.. ...+++...++...+....+ +...+..++..|.
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 578888888887763 2356666666555444 34567777777776543222 3344455555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.7e-10 Score=91.43 Aligned_cols=194 Identities=10% Similarity=-0.098 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
.++..+..+|.+.|++++|+..|++.++.. |.+..++..+..++...|++++|+..|+++.+..+ .+..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHH
Confidence 345555566666777777777777766654 45566666677777777777777777777766532 2455566666667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
...|++++|...++...+.. +.+......+...+...+..+....+........ ++...+. ++..+..........
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHH
Confidence 77777777777777766553 2233333333344444444444444444444321 1111111 222222221111111
Q ss_pred HHHHhhccC-------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 332 NVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 332 ~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
......... ...+|..++..+...|++++|.+.|++++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111111111 3346777888888999999999999998865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=6e-11 Score=94.20 Aligned_cols=157 Identities=10% Similarity=-0.068 Sum_probs=101.1
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISP---DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
.+...++.+.++..++++....... ...+|..+..+|.+.|++++|++.|++..+..+ .++.+|..+..++...|+
T Consensus 8 ~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~ 86 (259)
T d1xnfa_ 8 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGN 86 (259)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHH
Confidence 3444556677777777776543111 223566667777888888888888888877643 366777778888888888
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+++|.+.|+++.+.. +.+..++..+..++...|++++|...++...+... .+......+...+.+.+..+....+...
T Consensus 87 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 87 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888888888877765 44566777777777788888888888887776532 2344333334444444544444444444
Q ss_pred Hhh
Q 015246 162 LGD 164 (410)
Q Consensus 162 ~~~ 164 (410)
...
T Consensus 165 ~~~ 167 (259)
T d1xnfa_ 165 FEK 167 (259)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=1.6e-11 Score=101.46 Aligned_cols=272 Identities=8% Similarity=-0.058 Sum_probs=160.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHH----------HHhcCChhHHHHHHHHHhcCCCCCChhHHH
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHC----------LFQLGKPDEANRVFQDMICGDLTPCTATFN 105 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (410)
++......+..++|+++++...+.. |+ ...|+..-.. +...|++++|...++.+.+.+ +.+...|.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3333333334467777777777643 33 3333322222 222344667777777777654 55666666
Q ss_pred HHHHHHhhcC--chHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Q 015246 106 IMLNGLCKNR--YTDNALRMFRGLQKHGFVPELVTYN-ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 182 (410)
Q Consensus 106 ~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (410)
.+..++...+ ++++|...+..+.+... ++...+. .....+...+.+++|+..++.+....+ -+...|..+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 6665555544 46777777777776532 2444443 334566667777778777777776543 35667777777777
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 262 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 262 (410)
..|++++|...+....+.. |. .......+...+..+++...+....... +++...+..+...+...++.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHH
Confidence 7777776655544433321 11 1122333445566666666666666552 3344555556666677777778877
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLG 322 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 322 (410)
.+.+..+.+ +.+...+..+...+...|++++|...++++.+. .|+ ...|..+...+.
T Consensus 264 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 264 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 777776553 224556666777777788888888888887774 443 344455544443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=1.1e-11 Score=102.58 Aligned_cols=227 Identities=7% Similarity=-0.085 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc--chhHHHHHHHHHHHcCCCCChhhHH-HHHHHHHHcCCHHHHHHH
Q 015246 152 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNR--KYKLGLEILSAMKRKGYTFDGFGYC-TVIAAFVKIGRLKEATDY 228 (410)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~ 228 (410)
+++|+..++......+ .+...|..+..++...+ +++++...+..+.+.. +++...+. .....+...+.++.|...
T Consensus 89 ~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 89 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 4444444444444221 23333443333333332 2445555555554443 22233222 222344444555555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 015246 229 MEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 308 (410)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 308 (410)
++.+.+.++ -+...|..+..++...|++++|...+....+. .|+ .......+...+..+.+...+....... +
T Consensus 167 ~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~ 239 (334)
T d1dcea1 167 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-A 239 (334)
T ss_dssp HHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence 555554422 24445555555555555555544333332221 011 1112223344455556666666655542 3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHhhccCC---chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHH
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 385 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 385 (410)
++...+..++..+...|++++|...+.+....+ ..++..++.++...|++++|++.++++++.+ |.+...|..+..
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~ 318 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRS 318 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHH
Confidence 344445555666666777777777777776663 3556667777777888888888888887653 234455555555
Q ss_pred HHh
Q 015246 386 GLR 388 (410)
Q Consensus 386 ~~~ 388 (410)
.+.
T Consensus 319 ~~~ 321 (334)
T d1dcea1 319 KFL 321 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=1.7e-08 Score=80.95 Aligned_cols=132 Identities=12% Similarity=-0.049 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcCC---C--CChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHc----CCCC-Ch
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKGY---T--FDGFGYCTVIAAFVK-IGRLKEATDYMEQMVTD----GVQL-DI 241 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~ 241 (410)
+|..+..+|.+.|++++|.+.+++..+... . ....++..+...|.. .|++++|...+++..+. +.++ ..
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 444445555555555555555554432200 0 011223333333322 35556665555554331 1010 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD------KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.++..+...+...|++++|...++++........ ...+...+..+...|+++.|...+++..+
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2344455555556666666666555544321110 01122233344455555555555555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=2.1e-08 Score=80.51 Aligned_cols=167 Identities=10% Similarity=-0.083 Sum_probs=76.2
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CChhh
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRK----GYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-----LDIVS 243 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 243 (410)
|......|...+++++|.+.|.++.+. +.++ -..+|..+..+|.+.|++++|...++...+.... ....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444455555556666666666655432 1011 1234555555566666666666665554432100 01223
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhC----CCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------H
Q 015246 244 YNTLINLYC-KEGKLEAAYLLLDEMEKQ----GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN------L 311 (410)
Q Consensus 244 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 311 (410)
+..+...|. ..|++++|...+++..+. +..+ -..++..+...+...|++++|...++++........ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 333343442 245566666655554321 1111 122344455555556666666666655554311110 0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..+...+..+...|+++.|...+++....
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11223333444555555555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.2e-08 Score=69.24 Aligned_cols=90 Identities=19% Similarity=0.027 Sum_probs=60.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCC
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR 357 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 357 (410)
.-...+...|++++|+..|++.++.. +.+...|..+..++...|++++|+..+...... ++..|..++.++...|+
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 34555666777777777777776652 445666667777777777777777777766543 55666667777777777
Q ss_pred hhhHHHHHHHHHHc
Q 015246 358 LPSASKLLLSCLKS 371 (410)
Q Consensus 358 ~~~A~~~~~~~~~~ 371 (410)
+++|+..|++.++.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.8e-07 Score=69.50 Aligned_cols=123 Identities=8% Similarity=-0.023 Sum_probs=66.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH
Q 015246 144 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (410)
..+...|+++.|++.|.++. +|+..+|..+..++...|++++|++.|++.++.+ +.....|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 34455566666666555432 2445555555666666666666666666666554 444555555666666666666
Q ss_pred HHHHHHHHHHHcCCC--------------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 224 EATDYMEQMVTDGVQ--------------L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
+|...|++....... + ...++..+..++...|++++|.+.+.......
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666666655542100 0 01233344555666666666666666665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=4.4e-08 Score=66.30 Aligned_cols=90 Identities=13% Similarity=0.044 Sum_probs=45.7
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchH
Q 015246 39 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD 118 (410)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (410)
..+...|++++|+..|++..+.. |.+...|..+..++...|++++|...++..++.+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 34445555555555555555442 1244445555555555555555555555555443 444455555555555555555
Q ss_pred HHHHHHHHHHhC
Q 015246 119 NALRMFRGLQKH 130 (410)
Q Consensus 119 ~a~~~~~~~~~~ 130 (410)
+|+..|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.1e-07 Score=70.76 Aligned_cols=124 Identities=12% Similarity=-0.057 Sum_probs=78.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
...+...|+++.|++.|+++ .+|+..++..+..++...|++++|.+.|++.++.+ +.+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 34455667777777776653 23556666677777777777777777777777665 55666777777777777777
Q ss_pred HHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015246 118 DNALRMFRGLQKHGFV--------------P-ELVTYNILIKGLCKAGRLRTARWILKELGDSG 166 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (410)
++|...|++....... + ...++..+..++.+.|++++|.+.++......
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7777777766542110 0 01334455566677777777777776666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.83 E-value=1.1e-05 Score=63.31 Aligned_cols=223 Identities=9% Similarity=-0.016 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHH
Q 015246 135 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYC 210 (410)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (410)
|+..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..++..+...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556666677777788888888888777654 44455555666654 456777777777766654 222333
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 015246 211 TVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC----KEGKLEAAYLLLDEMEKQGFECDKYTHTIL 282 (410)
Q Consensus 211 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (410)
.+...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 33333332 34667777777776665432 22222222222 2334555556665555432 44455555
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhccC-CchhHHHHHHHHH
Q 015246 283 IDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLC 353 (410)
Q Consensus 283 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~ 353 (410)
...+.. ..+...+..+++...+.| +......+...|.. ..+++.|...|++..+. ++..+..|...|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 225 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHH
Confidence 555554 334555566666655543 34444444444443 44666666666666554 5556666666555
Q ss_pred h----cCChhhHHHHHHHHHHcC
Q 015246 354 K----AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 354 ~----~~~~~~A~~~~~~~~~~~ 372 (410)
. .++.++|.++|+++.+.|
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHCc
Confidence 4 335666666666666655
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=1.4e-08 Score=76.64 Aligned_cols=97 Identities=7% Similarity=-0.204 Sum_probs=84.9
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHH
Q 015246 274 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVH 350 (410)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 350 (410)
|+...+...+..+.+.|++++|+..|+++++.. +.++..|..+..+|.+.|++++|+..|++.... +..+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 667778888899999999999999999988864 557888999999999999999999999998776 5667888999
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 015246 351 NLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++...|++++|+..|+++++.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999998864
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.1e-07 Score=68.45 Aligned_cols=119 Identities=9% Similarity=-0.076 Sum_probs=75.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 116 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (410)
....|.+.|++++|+..|++..+.+. .+...|..+..++...|++++|.+.|+.+++.. +.+..+|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 34566677777777777777777642 356667777777777777777777777776655 5556677777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHH
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILIKG--LCKAGRLRTARWI 158 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~ 158 (410)
+++|...+++...... -+...+..+..+ ....+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777777777776532 234444333322 2333445555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=5.8e-08 Score=69.95 Aligned_cols=121 Identities=11% Similarity=-0.081 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHh
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCK 354 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~ 354 (410)
.+......|.+.|++++|...|+++++.. +.+...|..+..+|...|++++|...|+++.+. +..+|..++.++..
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 45566778899999999999999999874 557888999999999999999999999988765 66789999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH--HhhcCCHHHHHHHH
Q 015246 355 AKRLPSASKLLLSCLKSGVRILKSAQKAVVDG--LRHSGCRREAKKIQ 400 (410)
Q Consensus 355 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~ 400 (410)
.|++++|...+++++... +-+...+..+..+ ....+.+++|....
T Consensus 91 ~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999874 4445555555444 33445566666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.75 E-value=2.1e-05 Score=61.61 Aligned_cols=59 Identities=14% Similarity=-0.057 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGD 164 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 164 (410)
.+..|...+...+++++|++.|++..+.| +...+..|...|.. ..++..+...+.....
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 33444444444455555555555544433 23333334444433 3344444444444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=3e-08 Score=67.34 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccCC-----chhHHHHHHH
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVKD-----SFTYSSMVHN 351 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-----~~~~~~l~~~ 351 (410)
..++..+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+++++...+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777788888888888888888864 5567788888888876554 446888888876542 2367778888
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 015246 352 LCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~~ 372 (410)
|.+.|++++|++.|+++++..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 888888888888888888653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=3.3e-07 Score=68.89 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIML 108 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (410)
|+...+......+.+.|++++|+..|++..... |.+...|..+..+|.+.|++++|.+.|+..++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 455555556666666666666666666666553 2355566666666666666666666666666553 34455666666
Q ss_pred HHHhhcCchHHHHHHHHHHHh
Q 015246 109 NGLCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~ 129 (410)
.++...|++++|+..|+++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.64 E-value=1e-07 Score=63.78 Aligned_cols=87 Identities=11% Similarity=-0.098 Sum_probs=66.0
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
.+...+.+.|++++|...|++.... ++.+|..++.++.+.|++++|+..++++++.+ |.+...+..++..|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 4456667777777777777776654 55677777888888888888888888888764 5567788888888888888
Q ss_pred HHHHHHHHHHH
Q 015246 393 RREAKKIQSKI 403 (410)
Q Consensus 393 ~~~a~~~~~~~ 403 (410)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888775
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.56 E-value=5.1e-07 Score=60.29 Aligned_cols=88 Identities=11% Similarity=-0.047 Sum_probs=50.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
...+.+.|++++|+..|++..+..+ -+..+|..+..++.+.|++++|...|++.++.. +.+...|..+..+|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 4445556666666666666555432 245555556666666666666666666655544 44455555566666666666
Q ss_pred HHHHHHHHHH
Q 015246 118 DNALRMFRGL 127 (410)
Q Consensus 118 ~~a~~~~~~~ 127 (410)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.9e-07 Score=63.24 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=48.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---hhHHHHHHHHHhcCCCCCC-hhHHHHHHHHH
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK---PDEANRVFQDMICGDLTPC-TATFNIMLNGL 111 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 111 (410)
.++..+...+++++|.+.|+.....+. .++.++..+..++.+.++ +++|.++|+++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 344555555556666666665555432 244555555555554333 2345555555554432222 12445555556
Q ss_pred hhcCchHHHHHHHHHHHhC
Q 015246 112 CKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~ 130 (410)
.+.|++++|.+.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 6666666666666665553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=4e-07 Score=66.11 Aligned_cols=115 Identities=13% Similarity=-0.117 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-C-------------CHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFD-S-------------NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
..+......+.+.|++++|+..|++.++.-.. + ...+|..+..+|.+.|++++|+..++.....
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34556677889999999999999998764111 0 1234566778889999999999999887654
Q ss_pred -CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 341 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 341 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
++.++..++.++...|++++|+..|+++++.+ |.+......+..+..+.+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999998764 3456666566555444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.54 E-value=6.2e-07 Score=63.78 Aligned_cols=112 Identities=13% Similarity=-0.042 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFD----SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLC 353 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 353 (410)
.+..-+..+.+.|++..|...|.++++.-.. ++..... ........+|..++.+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--------------------KKKNIEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH--------------------hhhhHHHHHHhhHHHHHH
Confidence 4455566777888888888888887753100 1110000 000001234556666677
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
+.|++++|++.++++++.+ |.+..+|..++.++...|++++|...|++..+.+|+|
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7777777777777776654 4466677777777777777777777777777666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.43 E-value=0.00022 Score=56.89 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
.|+..-...+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++... -+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 35555566677788888888888888876532 667778888888888888877654 245678778
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
...+.+..+..-+ .+.......++.....++..|-..|.++....+++..... ..++...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 8888776665443 2223333346666677888888888888888888877653 2456667777888777754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.39 E-value=2.1e-06 Score=62.10 Aligned_cols=128 Identities=9% Similarity=-0.036 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCC-----------HHHHHHHHHHHHccCChHHHHHHHHhhccC-
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKI---GFDSN-----------LEAYNCIVDRLGKDGKIDHAINVFESMEVK- 340 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 340 (410)
...+...+..+.+.|++.+|...|++.+.. ...++ ..+|..+..+|.+.|++++|+..++.....
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 456677788899999999999999987642 11111 123455677889999999999999987764
Q ss_pred --CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCH-HHHHHHHHHHH
Q 015246 341 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCR-REAKKIQSKIR 404 (410)
Q Consensus 341 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 404 (410)
+..+|..++.++...|++++|...|+++++.+ |.+......+.......+.. +...+.+.+|.
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66788888999999999999999999999764 45666666665555554443 33445555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.5e-07 Score=81.50 Aligned_cols=224 Identities=6% Similarity=-0.104 Sum_probs=115.9
Q ss_pred HHHHHHHHHhhCCCCCc-HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHH
Q 015246 154 TARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-FGYCTVIAAFVKIGRLKEATDYMEQ 231 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (410)
+|.+.|++.... .|+ ...+..+..++...+++++| +++++..+ |+. ...+... ..-...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~--~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ--DLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH--HHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH--HHHHHHHHHHHHHHHH
Confidence 567777777652 233 33455566677777777765 56665442 211 1111111 1111123455566666
Q ss_pred HHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 015246 232 MVTDGVQLDIVSYNTLINL--YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 309 (410)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (410)
..+....++..-....... ....+.++.+...+....+.. .++...+..+...+.+.|+.+.|...+...... .|
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--HH
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH
Confidence 6554333333322222222 222344555555444443332 234556677777788888888888877766552 12
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
...+..+...+...|++++|...|++.... +...|+.++..+...|+..+|+..|.+.+... +|-+.++..+...
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 356777888888889999999988877654 66788888888888999999999999888765 6677788888777
Q ss_pred HhhcC
Q 015246 387 LRHSG 391 (410)
Q Consensus 387 ~~~~g 391 (410)
+.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 65543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.1e-05 Score=58.25 Aligned_cols=61 Identities=7% Similarity=-0.142 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
+|+.+..+|.+.|++++|+..++...... |.++.++..+..++...|++++|...|+...+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34445555555555555555555555542 22455555555555556666666665555555
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=2.7e-06 Score=61.58 Aligned_cols=108 Identities=11% Similarity=-0.085 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC--------------CC-CCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIG--------------FD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
.+......+...|++++|+..|+++++.. +. .....+..+..++.+.|++++|+..++++...
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 34556667788899999998888775420 01 12233444555666666666666666666544
Q ss_pred -CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 341 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 341 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
++.+|..++.++...|++++|+..|+++++.. |.+......+..+
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44556666666666666666666666666553 3344444444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.35 E-value=0.00036 Score=55.70 Aligned_cols=264 Identities=12% Similarity=0.107 Sum_probs=151.6
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015246 64 PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI 143 (410)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (410)
|+..-...++..|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 455555677888889999999999998764 36677888899999999988877542 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH
Q 015246 144 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (410)
..+.+......+ .+.......++.....++..|...|.+++...+++...... +.+...++.++..|++.+ .+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hH
Confidence 888888766554 22233334566666788999999999999999999887553 567777888888888764 44
Q ss_pred HHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHH
Q 015246 224 EATDYMEQMVTDGVQL--------DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 295 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (410)
+..+.+...... ..+ ....|..++-.|.+.|+++.|..++ .++ .++..-....+..+.+..+.+..
T Consensus 150 kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~ 223 (336)
T d1b89a_ 150 KMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELY 223 (336)
T ss_dssp HHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHH
T ss_pred HHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHH
Confidence 444444332111 111 1123444555555566666554432 222 23333344555666666776666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH-------------HhhccC-CchhHHHHHHHHHhcCChh
Q 015246 296 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF-------------ESMEVK-DSFTYSSMVHNLCKAKRLP 359 (410)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~-~~~~~~~l~~~~~~~~~~~ 359 (410)
.++.....+. .| ...+.++......-+.....+.+ +..... +....+++...|...++++
T Consensus 224 ~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~ 297 (336)
T d1b89a_ 224 YRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 297 (336)
T ss_dssp HHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhH
Confidence 6665555542 22 23344444444444444444443 333332 3445666666666666643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.4e-05 Score=54.59 Aligned_cols=91 Identities=14% Similarity=0.213 Sum_probs=43.4
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHH
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-------VSYNTLIN 249 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~ 249 (410)
+...+.+.|++++|+..|.+.++.+ |.+...+..+..+|.+.|++++|...++.+++.... +. .+|..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543 334445555555555555555555555554442110 11 12333334
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 015246 250 LYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~ 269 (410)
.+...+++++|...|.....
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 44444555555555554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=8.8e-06 Score=55.56 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cc-------hhHHHHHH
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS-------FTYSSMVH 350 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-------~~~~~l~~ 350 (410)
.+...+...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|...++++... +. .+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34455555666666666666655542 334555555666666666666666666654432 11 24455666
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 015246 351 NLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+...+++++|++.|++.+..
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 677778888888888887754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=8.9e-07 Score=76.48 Aligned_cols=226 Identities=9% Similarity=-0.097 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHH
Q 015246 14 AGYTILNRMREAGISPD-VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEANRVFQD 91 (410)
Q Consensus 14 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 91 (410)
+|.+.|++..+. +|+ ..++..+..++...+++++| |+++...+ |+. ...+. ....-...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~--e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV--EQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH--HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH--HHHHHHHHHHHHHHHHHH
Confidence 577888888765 343 34555666677777777665 66665532 221 11111 111111124556666766
Q ss_pred HhcCCCCCChhHHHHHHH--HHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015246 92 MICGDLTPCTATFNIMLN--GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (410)
..+....++..-...... .....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 665432333332222211 2223455556655555444332 2355667777788888888888887777665421
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
...++..+...+...|++++|...|.+..+.. |.+...|+.+...+...|+..+|...|.+.... .+|-+.++..+..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHH
Confidence 23466777888889999999999999998886 667788999999999999999999999998876 3456777777777
Q ss_pred HHHhc
Q 015246 250 LYCKE 254 (410)
Q Consensus 250 ~~~~~ 254 (410)
.+.+.
T Consensus 229 ~~~~~ 233 (497)
T d1ya0a1 229 ALSKA 233 (497)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=1.2e-05 Score=57.99 Aligned_cols=96 Identities=14% Similarity=-0.009 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------CC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQG--------------FE-CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD 308 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 308 (410)
+......+...|++++|...|.++.+.. .. .....+..+..++.+.|++++|+..++++++.. +
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence 3445556667777777777776654310 01 123345556667777777777777777777753 4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+...|..+..++...|++++|...|+++...
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45667777777777777777777777766554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.17 E-value=6.1e-05 Score=53.09 Aligned_cols=62 Identities=15% Similarity=-0.065 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
+|..+..+|.+.|++++|++.++...+.+ +.+..+|..+..++...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555566666666666666666665542 225556666666666666666666666666553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.15 E-value=1.7e-05 Score=57.11 Aligned_cols=128 Identities=12% Similarity=-0.019 Sum_probs=92.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCc-----------hHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFECD-----------KYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
...+......+.+.|++.+|...|.+.... ...++ ..+|..+..+|.+.|++++|+..++..++..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 456677788899999999999999887642 11111 1345567778899999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCCh-hhHHHHHHHHH
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRL-PSASKLLLSCL 369 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 369 (410)
+.+...+..+..++...|++++|...|+++... +..+...+..+....+.. +...+.+..|.
T Consensus 95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567888999999999999999999999998866 444555554444443333 23334444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.08 E-value=4.5e-06 Score=64.82 Aligned_cols=123 Identities=8% Similarity=-0.045 Sum_probs=77.6
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 83 (410)
-..+.|++++|++.+++..+.. |.+...+..+...++..|++++|.+.++...+.. |+ ...+..+...+...+..+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccH
Confidence 3467789999999999988876 5677888889999999999999999999888753 33 344444444443333333
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
++..........+-+++...+......+...|+.++|.+.++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22221111111111222333444456667778888888888877664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.04 E-value=3.7e-06 Score=65.35 Aligned_cols=54 Identities=30% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 251 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..+.|++++|...+++.++.. +.+...+..++..++..|++++|...++...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345677777777777777664 335666777777777777777777777777664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.02 E-value=6e-05 Score=54.56 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHH-----HcCCCCcHhhHHHH
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL-----KSGVRILKSAQKAV 383 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~~~~~l 383 (410)
..+..++.++...|++++|+..++++... +...|..++.++...|+..+|++.|+++. +.|+.|+..+-...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~ 147 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 147 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 45677888888999999999998887665 67788999999999999999999998875 35888887765433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.02 E-value=0.00013 Score=52.76 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCcHHHH
Q 015246 102 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD-----SGHAPNAITY 174 (410)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 174 (410)
..+..+...+...|++++|+..++.+.... +-+...|..++.++...|+..+|++.|+++.. .|+.|...+-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 455566666666777777777777766653 23666666777777777777777776666532 4666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.97 E-value=3.3e-05 Score=53.84 Aligned_cols=74 Identities=7% Similarity=-0.007 Sum_probs=49.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------ChhhHHHHHHHHHHcCCCCChHhHHHHHH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNS----------LLSCSLDLLDEMLEMGIPPDVWSYNSLMH 74 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 74 (410)
.|-+.+.+++|++.|+...+.. |.++.++..+..++...+ .+++|+..|++..+.++ .+..+|..+..
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~ 83 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGN 83 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHH
Confidence 4567788999999999998886 567778888777776543 34566666666666432 24556666666
Q ss_pred HHHhcC
Q 015246 75 CLFQLG 80 (410)
Q Consensus 75 ~~~~~~ 80 (410)
+|...|
T Consensus 84 ~y~~~g 89 (145)
T d1zu2a1 84 AYTSFA 89 (145)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=4e-05 Score=48.90 Aligned_cols=71 Identities=11% Similarity=-0.057 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC----------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHH
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 381 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 381 (410)
..+..+...+.+.|++++|...|++.... ...++..+..++.+.|++++|+..++++++.. |-+..++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 33445566666666666666666655432 12345666666666666666666666666553 22344444
Q ss_pred HH
Q 015246 382 AV 383 (410)
Q Consensus 382 ~l 383 (410)
.+
T Consensus 85 Nl 86 (95)
T d1tjca_ 85 NL 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=0.00018 Score=50.02 Aligned_cols=47 Identities=13% Similarity=0.066 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhC
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG-----------KLEAAYLLLDEMEKQ 270 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~ 270 (410)
++|+..|++.++.++ .+..+|..+..+|...| .+++|.+.|++..+.
T Consensus 58 ~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 58 QEAITKFEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 445555555554321 23444444444444332 234555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.65 E-value=0.0002 Score=50.59 Aligned_cols=60 Identities=13% Similarity=0.042 Sum_probs=30.2
Q ss_pred HHHHH--HHHHHhcCChhHHHHHHHHHHhcCC-CCC----------HHHHHHHHHHHHccCChHHHHHHHHhh
Q 015246 278 THTIL--IDGLCKAGNIKGARLHLEYMNKIGF-DSN----------LEAYNCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 278 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
.|..+ ...+...|++++|+..|++.++... .|+ ...|+.+..+|...|++++|...+++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a 81 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 81 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence 34444 3445556777777777777664210 011 223444555555555555555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00021 Score=45.34 Aligned_cols=65 Identities=11% Similarity=-0.014 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC-----CCC-cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCLKSG-----VRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
..++..+.+.|++++|+..|+++++.. ..+ ...++..++.++.+.|++++|...++++.+.+|+|
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence 344555555666666666555554321 011 13345555555666666666666666655555554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.54 E-value=0.00033 Score=49.34 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=44.9
Q ss_pred hhHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCC-Cc----------hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 242 VSYNTL--INLYCKEGKLEAAYLLLDEMEKQGFE-CD----------KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 242 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.+|..+ ...+...|++++|+..|++..+.... |+ ...|+.+..+|...|++++|...+++.++
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~ 83 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 83 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence 345555 44566778999999999888764211 21 24677788888889999999888887764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.20 E-value=0.0059 Score=41.24 Aligned_cols=109 Identities=11% Similarity=-0.033 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHH
Q 015246 256 KLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAI 331 (410)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 331 (410)
|+++|...|++..+.|.. .....+. .....+.++|..++++..+.| ++.....+...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 566677777776665521 1222222 223345566666666655544 23333344444432 23455555
Q ss_pred HHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHHHHHcC
Q 015246 332 NVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 332 ~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 372 (410)
+.|++..+. ++.....|...|.. ..+..+|.++|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 555555444 44444444444443 234555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.04 E-value=0.007 Score=40.83 Aligned_cols=109 Identities=8% Similarity=-0.128 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHH
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLL 365 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~ 365 (410)
++++|..+|++..+.|.. .....+. .....+.++|.+.+++..+. ++.....+...|.. ..+.++|.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 445566666665554421 1111221 22334556666666655444 55555555554443 34455666666
Q ss_pred HHHHHcCCCCcHhhHHHHHHHHhh----cCCHHHHHHHHHHHHHcc
Q 015246 366 LSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 407 (410)
++..+.| ++.....+...|.. ..+.++|.+++++..+.|
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 6666554 22333344444433 345666666666655444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.03 E-value=0.016 Score=37.43 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=96.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 015246 251 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 330 (410)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 330 (410)
+.-.|..++..+++.+..... +..-|+.++--....-+-+-..+.++.+-+. +.. ..+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDl------------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDL------------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCG------------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh-cCc------------hhhhcHHHH
Confidence 455677888888888777642 4556777776666666666666666665442 111 123333333
Q ss_pred HHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 331 INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
...+-.+. .+...+...+..+..+|+-+.-.++++.+.+.+ .|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 76 v~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 76 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33332221 245556667788889999999999999988865 88899999999999999999999999999888775
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.0036 Score=40.89 Aligned_cols=63 Identities=6% Similarity=-0.012 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHccCC---hHHHHHHHHhhccCC----chhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 309 SNLEAYNCIVDRLGKDGK---IDHAINVFESMEVKD----SFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++..+-..+..++.+... .++++.+++++...+ ...+..+..+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 344444445555554432 345555555544331 133445555555566666666666665544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.23 E-value=0.069 Score=34.46 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=80.2
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+.-.|.+++..+++.+.... .+..-||-+|......-+-+-..++++.+-+. + |. ...++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--Dl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-c--Cc----------hhhhcHHHH
Confidence 34467777778887777764 35556666666666655555555555555332 1 11 112222222
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
...+-.+ ..+.......+.....+|.-++-.++++.+.+. -.|++...-.+..+|.+.|+..++.+++.+..+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222221 122334455566666777777777777776553 3456666666777777777777777777777776
Q ss_pred CCC
Q 015246 166 GHA 168 (410)
Q Consensus 166 ~~~ 168 (410)
|.+
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.34 Score=40.16 Aligned_cols=53 Identities=13% Similarity=-0.066 Sum_probs=41.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 349 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 349 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+..+...|+...|...+..+... .+......+.....+.|.++.|+....+..
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 55677899999999999888753 245566677788899999999998877654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=1 Score=37.07 Aligned_cols=316 Identities=8% Similarity=0.007 Sum_probs=160.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 114 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (410)
..-+..+.+.++++..+..+. ..+++...-.....+....|+.+.|...+..+-..| ...+..+..+...+...
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhc
Confidence 344566777787766544331 133455555566777778888888887777666554 33344444444444443
Q ss_pred CchHH--HHHHHHHHHhCC-----------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHH
Q 015246 115 RYTDN--ALRMFRGLQKHG-----------FVPEL-VTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC 180 (410)
Q Consensus 115 ~~~~~--a~~~~~~~~~~~-----------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 180 (410)
|.... ...-++.+...| ++++. .....++..... ...+.... ... .++......+..+
T Consensus 150 ~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~~--~~~~~~~~~~~~~ 221 (450)
T d1qsaa1 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA---RTT--GATDFTRQMAAVA 221 (450)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH---HHS--CCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH---hcC--CCChhhhHHHHHH
Confidence 33221 111122221111 11111 111222222111 11111111 111 1222222222222
Q ss_pred HHh--ccchhHHHHHHHHHHHcCCCCChhhHHHHHHH----HHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 015246 181 CFR--NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA----FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 254 (410)
Q Consensus 181 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (410)
+.+ ..+.+.+...+....... ..+.......-.. ....+..+.+...+......+ .+.......+......
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~ 298 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHc
Confidence 222 245666777766665543 2222222222222 223345566666666555442 2333334444455566
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc------------CCCC-----------C-
Q 015246 255 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI------------GFDS-----------N- 310 (410)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-----------~- 310 (410)
+++..+...+..+.... .......-.+.+++...|+.+.|..+|..+... |.++ .
T Consensus 299 ~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~ 377 (450)
T d1qsaa1 299 GDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDS 377 (450)
T ss_dssp TCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCC
T ss_pred CChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHH
Confidence 77777777776664321 223344455667777777777777777765432 1110 0
Q ss_pred ---HHHHHHHHHHHHccCChHHHHHHHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 311 ---LEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 311 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
...-..-+..+...|....|...|..+... ++.....+.....+.|.++.|+....+.
T Consensus 378 ~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000122345677889999999988877655 6667777778888899999999887776
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.38 E-value=0.1 Score=31.83 Aligned_cols=51 Identities=10% Similarity=-0.078 Sum_probs=40.8
Q ss_pred ChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 357 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
+.-+..+-++.+...++-|++....+.+.+|.+.+++.-|.++++-++.+-
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~ 71 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 71 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445667777777777888888888888888999999998988888877543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.37 Score=31.16 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 257 LEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.++++.+|+++.+.+ +.+ ...+..+..+|.+.|+++.|...++.+++
T Consensus 54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555554432 112 12334444555555555555555555555
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.56 E-value=0.41 Score=29.11 Aligned_cols=44 Identities=7% Similarity=-0.034 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 260 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
+.+-++.+....+.|++......+++|.+.+++..|.++++-+.
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444
|