Citrus Sinensis ID: 015254

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
MAKSNILALFLSLLMLSAAAALDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIASATPSGSAIPGRRRLSFNF
ccHHHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEccccccEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEEcEEEcccccccccccccccccccccEEEEEEEEEEccEEEEEEEEEccccEEEEEEcEEcEEEEEEEEEcccccccccEEEccccccEEEEEEEEEccccEEEEccccEEEEEEEEEEccccccEEEEcccccccccEEEEEEEEEEEEccccEEEEEEcccccccEEEEEEEEcEEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEccccccccEEEEccccccccEEccccccccccccccccccccEEEEcc
cccHHHHEEHHHHHHcccccccEEEEHccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEcEEEcccccHHHHccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEccccccccccEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccEEEEccccccccccEccHHHcccccccccccccccEEEEcc
MAKSNILALFLSLLMLSAAAALDVdvtkhgakqNADISQALRDAWKEACaattpskvlipqgtyqlspvtmegpcKAAIELQVKGTlkaltdpanvkdagswvsfnKIEHltvsgggtfdgqgavapsecekddyckkrpivsnlsfnaiTNSVVqdvtslnskqfHINVigaknftfqrvtvtapeeslntdgihvgrssgvtitdskigtgddcisigdgtqqmeinkidcgpghgisvgslgkyqneqpvvgIRVREcnisntsngvriktwpasypgtasdlhfedikmnnvsnpilldqvycphnqcnakvpsrvkldrvsfknirgtSATAVAIKLAcsggvpcegveladisltytgpegpiksectniqpktsgkmnpppciasatpsgsaipgrrrlsfnf
MAKSNILALFLSLLMLSAAAALDVDVTKHGAKQNADISQALRDAWKEACAattpskvlipqGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTapeeslntdgihvgrssgvtitdskigtgdDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVREcnisntsngvriktwpaSYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNqcnakvpsrvklDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIAsatpsgsaipgrRRLSFNF
MAKSNIlalflsllmlsaaaalDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIASATPSGSAIPGRRRLSFNF
*****ILALFLSLLMLSAAAALDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTG**********************************************
**KSNILALFLSLLMLSAAAALDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISV**LG*YQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPC**************RRLSFN*
MAKSNILALFLSLLMLSAAAALDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIASATPSGSAIPGRRRLSFNF
*AKSNILALFLSLLMLSAAAALDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIAS******************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKSNILALFLSLLMLSAAAALDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIASATPSGSAIPGRRRLSFNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query410 2.2.26 [Sep-21-2011]
Q05967396 Polygalacturonase OS=Nico N/A no 0.939 0.972 0.560 1e-128
Q39786407 Polygalacturonase OS=Goss N/A no 0.946 0.953 0.542 1e-122
Q39766407 Polygalacturonase OS=Goss N/A no 0.946 0.953 0.539 1e-121
P24548362 Exopolygalacturonase (Fra N/A no 0.863 0.977 0.571 1e-120
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.875 0.952 0.547 1e-114
Q40312421 Polygalacturonase OS=Medi N/A no 0.909 0.885 0.502 1e-110
P35337397 Polygalacturonase OS=Bras N/A no 0.929 0.959 0.494 1e-106
P49063444 Exopolygalacturonase clon no no 0.902 0.833 0.485 1e-100
P26216410 Exopolygalacturonase OS=Z N/A no 0.887 0.887 0.431 3e-84
P35339410 Exopolygalacturonase OS=Z N/A no 0.887 0.887 0.425 4e-84
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  460 bits (1183), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/391 (56%), Positives = 289/391 (73%), Gaps = 6/391 (1%)

Query: 6   ILALFLSLLMLSAAAALDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQ 65
           ++ LFL+    S     D+  TK+GA  NADIS+AL +A+KEAC +T+PS ++IP+GT+ 
Sbjct: 11  LVLLFLAHFGESQTGVFDI--TKYGANSNADISEALLNAFKEACQSTSPSTIVIPKGTFT 68

Query: 66  LSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAV 125
           ++ V +EGPCK+ +ELQ++ TLKA +DP+ +K  G W++ NK++  T+SGGG  DGQ A 
Sbjct: 69  MNQVKLEGPCKSPLELQIQATLKAPSDPSQLK-VGEWLTVNKLDQFTMSGGGILDGQAAA 127

Query: 126 APSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTA 185
           A  EC++   C K P  +NLSFN++TNS ++D+T+L+SK FH+NV   KN TF R  V+A
Sbjct: 128 A-WECKQSKKCNKLP--NNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSA 184

Query: 186 PEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLG 245
           P  S NTDGIHV RSS V ITDS   TGDDCIS+GD T+Q+ I ++ CGPGHGISVGSLG
Sbjct: 185 PANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLG 244

Query: 246 KYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQV 305
              +E+PVVG+ VR C  +NT NGVRIKTWPAS+PG  +D+HFEDI + NVSNP+++DQV
Sbjct: 245 GNPDEKPVVGVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSNPVVIDQV 304

Query: 306 YCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGP 365
           YCP N+CN  +PS+VK+ +VSF+NI+GTS T  A+ L  S GVPCEG+E+ DI +TY+G 
Sbjct: 305 YCPFNKCNKDLPSQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSGK 364

Query: 366 EGPIKSECTNIQPKTSGKMNPPPCIASATPS 396
           EGP KS C NI+P   GK NPP C ASA  S
Sbjct: 365 EGPAKSSCENIKPSLKGKQNPPVCTASAASS 395
May function in depolymerizing pectin during pollen development, germination, and tube growth.
Nicotiana tabacum (taxid: 4097)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q40312|PGLR_MEDSA Polygalacturonase OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P35337|PGLR_BRANA Polygalacturonase OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2 Back     alignment and function description
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
6714524393 polygalacturonase [Salix gilgiana] 0.878 0.916 0.632 1e-134
6714526393 polygalacturonase [Salix gilgiana] 0.878 0.916 0.629 1e-133
6714528393 polygalacturonase [Salix gilgiana] 0.880 0.918 0.614 1e-131
6714530393 polygalacturonase [Salix gilgiana] 0.878 0.916 0.621 1e-131
224127778393 predicted protein [Populus trichocarpa] 0.936 0.977 0.588 1e-130
224096864391 predicted protein [Populus trichocarpa] 0.934 0.979 0.573 1e-129
7435386385 polygalacturonase (EC 3.2.1.15) precurso 0.936 0.997 0.564 1e-128
7435385385 polygalacturonase (EC 3.2.1.15) precurso 0.936 0.997 0.561 1e-127
548491396 RecName: Full=Polygalacturonase; Short=P 0.939 0.972 0.560 1e-127
302143491 1080 unnamed protein product [Vitis vinifera] 0.880 0.334 0.584 1e-127
>gi|6714524|dbj|BAA89476.1| polygalacturonase [Salix gilgiana] Back     alignment and taxonomy information
 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/367 (63%), Positives = 287/367 (78%), Gaps = 7/367 (1%)

Query: 25  DVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVK 84
           DVTK+G KQ  DI+ AL +AWK+ACA+T PSKV IP GTY L  VT+ GPCK+AIELQV 
Sbjct: 32  DVTKYGGKQ--DITAALTNAWKDACASTKPSKVRIPSGTYSLRQVTLAGPCKSAIELQVN 89

Query: 85  GTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSE--CEKDDYCKKRPIV 142
           G LKA  +P      G WV+F  I+HLT+SG GTFDGQG VA S+  C K+  C+  P+ 
Sbjct: 90  GILKAPVNPDQF-SGGHWVNFRYIDHLTLSGSGTFDGQGNVAWSKSTCSKNKNCEGLPM- 147

Query: 143 SNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSG 202
            N+ F+ ITN +V+D+T+ +SK FH+NV+G KN TFQ  TVTAP ES+NTDGIH+GRS+G
Sbjct: 148 -NIRFDFITNGLVRDITTRDSKNFHVNVLGCKNLTFQHFTVTAPAESINTDGIHIGRSTG 206

Query: 203 VTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECN 262
           + I DSKIGTGDDCIS+GDGT+++ + ++ CGPGHGISVGSLG+Y NE+PV GI V+ C 
Sbjct: 207 IYIIDSKIGTGDDCISVGDGTEELHVTRVTCGPGHGISVGSLGRYPNEKPVSGIFVKNCT 266

Query: 263 ISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKL 322
           ISNT+NGVRIK+WP  Y G AS++HFEDI MNNV NPILLDQVYCP NQC+ K PS+VK+
Sbjct: 267 ISNTANGVRIKSWPDLYGGVASNMHFEDIVMNNVQNPILLDQVYCPWNQCSLKAPSKVKI 326

Query: 323 DRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSG 382
             VSFKNIRGTSAT V +KLACS G+PCE VELA+I+L Y+G EGP KS+C+N++PK SG
Sbjct: 327 SDVSFKNIRGTSATPVVVKLACSSGIPCEKVELANINLVYSGSEGPAKSQCSNVKPKISG 386

Query: 383 KMNPPPC 389
            M+   C
Sbjct: 387 IMSASGC 393

Source: Salix gilgiana

Species: Salix gilgiana

Genus: Salix

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|6714526|dbj|BAA89477.1| polygalacturonase [Salix gilgiana] Back     alignment and taxonomy information
>gi|6714528|dbj|BAA89478.1| polygalacturonase [Salix gilgiana] Back     alignment and taxonomy information
>gi|6714530|dbj|BAA89479.1| polygalacturonase [Salix gilgiana] Back     alignment and taxonomy information
>gi|224127778|ref|XP_002329175.1| predicted protein [Populus trichocarpa] gi|222870956|gb|EEF08087.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224096864|ref|XP_002310765.1| predicted protein [Populus trichocarpa] gi|222853668|gb|EEE91215.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7435386|pir||S46530 polygalacturonase (EC 3.2.1.15) precursor (clone pC27.X and clone pC27.Y) - common tobacco (fragment) gi|1345548|emb|CAA50334.1| polygalacturonase [Nicotiana tabacum] gi|1345549|emb|CAA50336.1| polygalacturonase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|7435385|pir||S46529 polygalacturonase (EC 3.2.1.15) precursor (clone pC27.W) - common tobacco (fragment) gi|1345547|emb|CAA50337.1| polygalacturonase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|548491|sp|Q05967.1|PGLR_TOBAC RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor gi|22701|emb|CAA50338.1| polygalacturonase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|302143491|emb|CBI22052.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.875 0.952 0.547 4.9e-108
TAIR|locus:2077442444 AT3G07850 [Arabidopsis thalian 0.897 0.828 0.506 1.4e-101
TAIR|locus:2088252445 AT3G14040 [Arabidopsis thalian 0.897 0.826 0.503 2.3e-101
TAIR|locus:2077402391 AT3G07820 [Arabidopsis thalian 0.895 0.938 0.502 3.8e-101
TAIR|locus:2077437401 AT3G07840 [Arabidopsis thalian 0.909 0.930 0.505 5.6e-100
TAIR|locus:2164773395 AT5G48140 [Arabidopsis thalian 0.865 0.898 0.504 4.5e-98
TAIR|locus:2077412397 AT3G07830 [Arabidopsis thalian 0.880 0.909 0.491 2e-97
TAIR|locus:2141877414 AT4G18180 [Arabidopsis thalian 0.880 0.871 0.447 1.3e-84
TAIR|locus:2032125404 AT1G78400 [Arabidopsis thalian 0.885 0.898 0.428 3e-78
TAIR|locus:2020352402 AT1G17150 [Arabidopsis thalian 0.887 0.905 0.427 7.9e-78
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
 Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
 Identities = 200/365 (54%), Positives = 263/365 (72%)

Query:    25 DVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAA-IELQV 83
             +V  +GAK   DISQA+  AWK ACA+  PS VLIP+G Y +  V M+GPCK + I  Q+
Sbjct:    11 NVNDYGAKGAGDISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKIGFQI 70

Query:    84 KGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQG--AVAPSECEKDDYCKKRPI 141
              G +KA  DP+  K  G WVSF +I+ LTVSG GT DGQG  A A + C+K+  CK   +
Sbjct:    71 DGVVKAPADPSKFKSDG-WVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCKHAAM 129

Query:   142 VSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSS 201
               NL F+ + +++V+D+TSLNSK FHINV+  ++ TFQ VTVTAP  S+NTDGIHVG S 
Sbjct:   130 --NLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISK 187

Query:   202 GVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVREC 261
             GVTIT++KI TGDDCISIG G+Q + I +++CGPGHGIS+GSLG+Y NE+ V GI V+ C
Sbjct:   188 GVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITVKGC 247

Query:   262 NISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVK 321
               S T NGVR+KTWP S PG A+DL F+D+ MNNV NP++LDQ YCP+ QC+ + PSR+K
Sbjct:   248 TFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQAPSRIK 307

Query:   322 LDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTS 381
             L  ++F NIRGTS   VA+ +ACS G+PC  +++ +I+L+Y G  GP  S C+N++P  S
Sbjct:   308 LSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATSTCSNVKPTFS 367

Query:   382 GKMNP 386
             GK  P
Sbjct:   368 GKQVP 372
GO:0005575 "cellular_component" evidence=ND
GO:0019863 "IgE binding" evidence=IDA
GO:0045490 "pectin catabolic process" evidence=IDA
GO:0047911 "galacturan 1,4-alpha-galacturonidase activity" evidence=IDA
TAIR|locus:2077442 AT3G07850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088252 AT3G14040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077402 AT3G07820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077437 AT3G07840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164773 AT5G48140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077412 AT3G07830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141877 AT4G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032125 AT1G78400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020352 AT1G17150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40312PGLR_MEDSA3, ., 2, ., 1, ., 1, 50.50260.90970.8859N/Ano
Q39786PGLR_GOSHI3, ., 2, ., 1, ., 1, 50.54220.94630.9533N/Ano
Q05967PGLR_TOBAC3, ., 2, ., 1, ., 1, 50.56010.93900.9722N/Ano
Q39766PGLR_GOSBA3, ., 2, ., 1, ., 1, 50.53980.94630.9533N/Ano
Q6H9K0PGLR2_PLAAC3, ., 2, ., 1, ., 6, 70.54790.87560.9522N/Ano
P24548PGLR_OENOR3, ., 2, ., 1, ., 6, 70.57180.86340.9779N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-140
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-120
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-95
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-87
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 2e-81
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-66
PLN03010409 PLN03010, PLN03010, polygalacturonase 4e-66
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-17
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 9e-05
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information 
 Score =  405 bits (1042), Expect = e-140
 Identities = 185/380 (48%), Positives = 243/380 (63%), Gaps = 11/380 (2%)

Query: 16  LSAAAALDVDVTKHGAKQNA--DISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEG 73
           +  ++    DV   GA+ N   D S+A   AWK ACA+T    +LIP GTY + PV   G
Sbjct: 29  VKGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHG 88

Query: 74  PCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVA-P-SECE 131
           PC     L    TLKA TD +       W+ F  +  LT++GGGTFDGQGA A P ++C 
Sbjct: 89  PCTNVSSLTF--TLKAATDLSRYGSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCP 146

Query: 132 KDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLN 191
               CK  P  +++ F  + N+VV+ +TS+NSK FHI ++  +NF    + ++AP +S N
Sbjct: 147 IRKDCKLLP--TSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPN 204

Query: 192 TDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQ 251
           TDGIH+ RSSGV I+DS+IGTGDDCISIG G  Q+ I +I CGPGHGISVGSLG+Y NE 
Sbjct: 205 TDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEG 264

Query: 252 PVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLH--FEDIKMNNVSNPILLDQVYCPH 309
            V G+ VR+C  + T+NG+RIKTW  S PG ++  +  FE+I MNNV+NPI++DQ YCP 
Sbjct: 265 DVTGLVVRDCTFTGTTNGIRIKTWANS-PGKSAATNMTFENIVMNNVTNPIIIDQKYCPF 323

Query: 310 NQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPI 369
             C +K PS V L  + FKNIRGTS++ VA+ L CS GVPC+GV L D+ L  +  EG  
Sbjct: 324 YSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGT 383

Query: 370 KSECTNIQPKTSGKMNPPPC 389
            S C N++ K  G   PPPC
Sbjct: 384 SSSCENVRAKYIGTQIPPPC 403

Length = 404
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 410
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.91
PLN02793443 Probable polygalacturonase 99.89
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.88
PLN02218431 polygalacturonase ADPG 99.87
PLN03003456 Probable polygalacturonase At3g15720 99.86
PLN02155394 polygalacturonase 99.85
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.85
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.84
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.84
PLN03010409 polygalacturonase 99.82
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.66
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.37
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 99.26
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.97
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.79
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.65
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.47
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.46
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.45
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.41
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.38
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.3
smart00656190 Amb_all Amb_all domain. 98.27
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.27
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.24
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.22
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.21
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.11
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.08
PLN02480343 Probable pectinesterase 97.99
smart00656190 Amb_all Amb_all domain. 97.98
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.84
PLN02176340 putative pectinesterase 97.75
PLN02497331 probable pectinesterase 97.6
PLN02634359 probable pectinesterase 97.57
PRK10531422 acyl-CoA thioesterase; Provisional 97.54
PLN02773317 pectinesterase 97.44
PLN02665366 pectinesterase family protein 97.41
PLN02682369 pectinesterase family protein 97.4
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.39
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.27
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.25
PLN02916502 pectinesterase family protein 97.22
PLN02314586 pectinesterase 97.19
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.16
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.16
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.15
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.13
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.12
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.07
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.01
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.01
PLN02197588 pectinesterase 97.0
PLN02304379 probable pectinesterase 96.99
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.99
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 96.99
PLN02671359 pectinesterase 96.99
PLN02432293 putative pectinesterase 96.99
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.97
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.96
PLN02217670 probable pectinesterase/pectinesterase inhibitor 96.94
PLN02301548 pectinesterase/pectinesterase inhibitor 96.9
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.88
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 96.85
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.82
PLN02682369 pectinesterase family protein 96.74
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.56
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.43
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 94.27
PLN02480343 Probable pectinesterase 93.14
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 92.9
PF1221867 End_N_terminal: N terminal extension of bacterioph 91.86
PLN02773317 pectinesterase 91.64
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.45
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 90.93
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.92
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 90.53
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 89.59
PLN02916502 pectinesterase family protein 89.42
PLN02170529 probable pectinesterase/pectinesterase inhibitor 89.23
PLN02665366 pectinesterase family protein 88.92
PRK10531422 acyl-CoA thioesterase; Provisional 88.32
PLN02506537 putative pectinesterase/pectinesterase inhibitor 88.1
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 87.97
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 87.81
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 87.44
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 87.41
PLN02201520 probable pectinesterase/pectinesterase inhibitor 87.22
PLN02488509 probable pectinesterase/pectinesterase inhibitor 87.06
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 86.89
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 86.83
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 86.75
PLN02432293 putative pectinesterase 86.73
PLN02634359 probable pectinesterase 86.5
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 86.25
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 86.18
PLN02416541 probable pectinesterase/pectinesterase inhibitor 86.17
PLN02468565 putative pectinesterase/pectinesterase inhibitor 85.91
PLN02304379 probable pectinesterase 85.87
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 85.82
PLN02301548 pectinesterase/pectinesterase inhibitor 85.65
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 85.56
PLN02671359 pectinesterase 85.52
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 85.13
PLN02484587 probable pectinesterase/pectinesterase inhibitor 84.94
PLN02314586 pectinesterase 84.55
PLN02176340 putative pectinesterase 84.48
PLN02197588 pectinesterase 84.36
PLN02497331 probable pectinesterase 83.49
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 83.03
PLN02313587 Pectinesterase/pectinesterase inhibitor 83.0
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 81.94
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-78  Score=596.10  Aligned_cols=386  Identities=40%  Similarity=0.713  Sum_probs=345.9

Q ss_pred             Ccchh----hHHHHHHHHHhhhccceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCceEEeeeeEecCC
Q 015254            1 MAKSN----ILALFLSLLMLSAAAALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGP   74 (410)
Q Consensus         1 m~~~~----~~~~~~~~~~~~~~~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~~l~l~~~   74 (410)
                      |.|+-    ||+.+|.+...+..+++++||+||||+||  +|+|+|||+||++||+..+|++|+||+|+|++++|.|+||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gp   80 (394)
T PLN02155          1 MTKSAITFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGP   80 (394)
T ss_pred             CccceeehhHHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEccc
Confidence            55654    45555556666677799999999999999  9999999999987898888899999999999999999999


Q ss_pred             CCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEE
Q 015254           75 CKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSV  154 (410)
Q Consensus        75 ~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~  154 (410)
                      |||+++|+++|+++++.++..|.....|+.+.+++++.|+| |+|||+|+.||...........+|+  ++.|.+|++++
T Consensus        81 cksnv~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~--~i~~~~~~nv~  157 (394)
T PLN02155         81 CKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVR--SISFNSAKDVI  157 (394)
T ss_pred             CCCCceEEEeeEEECccccccccccceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCccc--ceeEEEeeeEE
Confidence            99999999999999988888786556799999999999999 9999999999963332233345678  89999999999


Q ss_pred             EEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEc
Q 015254          155 VQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCG  234 (410)
Q Consensus       155 I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~  234 (410)
                      |++++++|||.|++++..|+|++|++++|.++.+++|+||||+.+|++|+|+||+|.+|||||+++++++||+|+||+|.
T Consensus       158 i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~  237 (394)
T PLN02155        158 ISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACG  237 (394)
T ss_pred             EECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEE
Confidence            99999999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEEeeeCCCCC-CC
Q 015254          235 PGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQ-CN  313 (410)
Q Consensus       235 ~~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~-~~  313 (410)
                      .+||++|||+|++...+.|+||+|+||+|.++.+|++||+|.+.++|.|+||+|+||+|+++.+||.|++.|++... |+
T Consensus       238 ~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~  317 (394)
T PLN02155        238 PGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCP  317 (394)
T ss_pred             CCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCc
Confidence            99999999998765578999999999999999999999999765579999999999999999999999999986543 43


Q ss_pred             CCCCCceeEEeEEEEeEEEeecCcceEEEecCCCCceecEEEEeEEEEecCCCCCCceeeeeccccCCCcccCCCCCC
Q 015254          314 AKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIA  391 (410)
Q Consensus       314 ~~~~~~~~i~nVtf~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~~  391 (410)
                       ...+.+.|+||+|+||+++.....++.+.|++..||+||+|+||++..+++. ++.+.|+||+|...++++|++|.+
T Consensus       318 -~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~-~~~~~C~n~~G~~~~~~~p~~c~~  393 (394)
T PLN02155        318 -NEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT-PATSFCFNAVGKSLGVIQPTSCLN  393 (394)
T ss_pred             -CCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCC-ccCcEEeccEeEEcccCCcccccC
Confidence             3355689999999999999987788999999999999999999999988654 567999999999999889989964

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 2e-18
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-13
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 9e-12
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 3e-11
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 4e-11
1nhc_A336 Structural Insights Into The Processivity Of Endopo 5e-11
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-10
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 5e-05
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 113 VSGGGTFDGQGAVA-----PSECEKDDYCKKRPIVSN----LSFNAITNSVVQDVTSLNS 163
           + G GT DGQG V       S  E     K + +  N    +  N   N  + +V+ +NS
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINS 172
Query: 164 KQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223
             FH+       FT  + T+  P  + NTDGI    S  +TI  S I TGDD ++I    
Sbjct: 173 PNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK 232
Query: 224 QQMEINKI-----DCGPGHGISVGS--LGKYQNEQPVVGIRVRECNISNTSNGVRIKTWP 276
            + E   I     D G GHG+S+GS  +G Y        + V +  ++ T+NG+RIK+  
Sbjct: 233 GRAETRNISILHNDFGTGHGMSIGSETMGVYN-------VTVDDLKMNGTTNGLRIKS-D 284
Query: 277 ASYPGTASDLHFEDIKMNNVSNPILLDQVY 306
            S  G  + + + ++ M NV+ PI++D VY
Sbjct: 285 KSAAGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-112
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-108
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-102
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-101
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 4e-98
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-97
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-96
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 1e-87
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 2e-81
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 6e-67
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 6e-28
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-22
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-19
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 2e-16
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 1e-11
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 6e-07
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 7e-06
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-05
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  333 bits (855), Expect = e-112
 Identities = 77/398 (19%), Positives = 143/398 (35%), Gaps = 39/398 (9%)

Query: 17  SAAAALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQL-SPVTMEG 73
           +  A    ++  +GA  +   D+  A+  AW  AC   +   V IP G Y L + VT+ G
Sbjct: 14  TKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTG 70

Query: 74  PCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKD 133
                  +Q+ G +      +      +       E  + +  G   G G          
Sbjct: 71  GSA--TAIQLDGIIYRTGTASGNMI--AVTDTTDFELFSSTSKGAVQGFGY------VYH 120

Query: 134 DYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTD 193
                      L    +T+  V D+  +++  FH  +    +     + +         D
Sbjct: 121 AEGTYGAR--ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLD 177

Query: 194 GIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPV 253
           GI V   S + + D ++   D+C+++      + +  I C    G ++GSLG   +   V
Sbjct: 178 GIDVW-GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---V 233

Query: 254 VGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCN 313
             I  R     +++    IK+   S  GT S++  E+   +  +  + +D  +       
Sbjct: 234 TDIVYRNVYTWSSNQMYMIKSNGGS--GTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA 291

Query: 314 AKVPSRVKLDRVSFKNIRGTS---ATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIK 370
                 V+L+ ++ KN +GT    AT   I++ CS   PC  + L DI++          
Sbjct: 292 ---GDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES-GSSEL 347

Query: 371 SECTNIQPKTSGKMNPPPCIASAT-------PSGSAIP 401
             C +         +     +  T       PSG +  
Sbjct: 348 YLCRSAYGSGYCLKDSSSHTSYTTTSTVTAAPSGYSAT 385
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.96
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.94
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.91
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.89
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.87
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.87
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.86
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.84
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.82
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.79
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.78
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.58
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.53
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.52
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.48
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.42
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.36
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 99.2
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.14
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.99
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.71
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.69
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.63
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.57
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.53
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.5
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.41
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.38
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.34
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.34
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.26
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.25
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.24
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.23
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.2
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.11
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.06
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.03
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.9
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.87
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.85
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.74
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.7
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.6
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.52
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.47
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.68
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.49
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.32
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.15
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.06
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.03
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.95
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.6
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 95.46
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.35
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 94.79
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 93.7
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 93.45
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.32
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 90.42
3riq_A543 Tailspike protein; right handed beta-helix, endorh 85.05
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=5.2e-63  Score=498.27  Aligned_cols=332  Identities=21%  Similarity=0.301  Sum_probs=294.5

Q ss_pred             cceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCc-
Q 015254           20 AALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANV-   96 (410)
Q Consensus        20 ~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~-   96 (410)
                      .+.+++|++|||+||  +|||+|||+||+ +|++.+|++|+||+|+|++++|.|+    ++++|+++|+|++++++.+| 
T Consensus        24 ~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~ggg~v~vP~G~yl~~~l~l~----s~v~l~l~gtL~~s~d~~~y~   98 (448)
T 3jur_A           24 PDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQGGGRLIVPEGVFLTGPIHLK----SNIELHVKGTIKFIPDPERYL   98 (448)
T ss_dssp             CSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHTCEEEEECSSEEEESCEECC----TTEEEEESSEEEECCCGGGGC
T ss_pred             CCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcCCeEEEECCCcEEEeeeEeC----CCcEEEEEEEEEecCCHHHhC
Confidence            477999999999999  999999999996 5665567999999999999999998    99999999999999999888 


Q ss_pred             cC------------CCccEEEEeeeeEEEEeCeEecCCC--CCCCccccc-C----------------------------
Q 015254           97 KD------------AGSWVSFNKIEHLTVSGGGTFDGQG--AVAPSECEK-D----------------------------  133 (410)
Q Consensus        97 ~~------------~~~~i~~~~~~nv~I~G~G~idG~g--~~~~~~~~~-~----------------------------  133 (410)
                      +.            ..+||.+.+++||+|+|.|+|||+|  +.||+.... .                            
T Consensus        99 p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~  178 (448)
T 3jur_A           99 PVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVE  178 (448)
T ss_dssp             SCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHTCCGG
T ss_pred             cccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcccCcch
Confidence            21            1468999999999999999999999  899963210 0                            


Q ss_pred             -----CCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEee
Q 015254          134 -----DYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDS  208 (410)
Q Consensus       134 -----~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~  208 (410)
                           .....||+  +|.|.+|+|++|++++++|+|.|++++..|+|++|++++|.++  ++|+||||+.+|++|+|+||
T Consensus       179 ~~~~~~~~~~RP~--~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~  254 (448)
T 3jur_A          179 ERVFGKGHYLRPS--FVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKC  254 (448)
T ss_dssp             GCBCSTTCCCCCC--SEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESC
T ss_pred             hhhccccccCCce--EEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEee
Confidence                 12246899  9999999999999999999999999999999999999999997  58999999999999999999


Q ss_pred             EEecCCceEEecCC-----------ceeEEEEeEEE--cCCc-eEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEe
Q 015254          209 KIGTGDDCISIGDG-----------TQQMEINKIDC--GPGH-GISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKT  274 (410)
Q Consensus       209 ~i~~gdD~i~i~s~-----------~~nv~I~n~~~--~~~~-Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks  274 (410)
                      +|.++||||+++++           ++||+|+||+|  ..+| |++|||+    ..+.++||+|+||++.++.+|++||+
T Consensus       255 ~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~~t~~GirIKt  330 (448)
T 3jur_A          255 RFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYMNVERALRLKT  330 (448)
T ss_dssp             EEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEESCSEEEEEEC
T ss_pred             EEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEecccceEEEEE
Confidence            99999999999998           89999999999  5677 8999998    46789999999999999999999999


Q ss_pred             cCCCCCcceeeEEEEeEEEecCCccE-EEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEeecCcceEEEecCCCCceecE
Q 015254          275 WPASYPGTASDLHFEDIKMNNVSNPI-LLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGV  353 (410)
Q Consensus       275 ~~g~~~g~v~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~~~~~~~~i~~~~~~~~~ni  353 (410)
                      +.++ +|.|+||+|+||+++++.+++ .|++.|+...     ....+.|+||+|+||+++. ...++.+.|.+..||+||
T Consensus       331 ~~g~-gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~~~p~~~I  403 (448)
T 3jur_A          331 NSRR-GGYMENIFFIDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATG-GKYAVRIEGLENDYVKDI  403 (448)
T ss_dssp             CTTT-CSEEEEEEEESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEE-CSEEEEEECBTTBCEEEE
T ss_pred             EcCC-CceEeeEEEEEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEe-cceEEEEEeCCCCCEeeE
Confidence            9877 599999999999999999988 9999987641     1234589999999999998 567899999999999999


Q ss_pred             EEEeEEEEecCCCCCCceeeee
Q 015254          354 ELADISLTYTGPEGPIKSECTN  375 (410)
Q Consensus       354 ~~~nv~i~~~~~~~~~~~~c~n  375 (410)
                      +|+||+++....    ...|.+
T Consensus       404 ~~~nv~i~~~~~----~~~~~~  421 (448)
T 3jur_A          404 LISDTIIEGAKI----SVLLEF  421 (448)
T ss_dssp             EEEEEEEESCSE----EEEEEE
T ss_pred             EEEEEEEEcccc----ceeEec
Confidence            999999986542    245665
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 410
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-71
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-70
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-70
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-65
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-60
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-58
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 5e-57
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 3e-49
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

 Score =  227 bits (579), Expect = 1e-71
 Identities = 42/374 (11%), Positives = 87/374 (23%), Gaps = 30/374 (8%)

Query: 30  GAKQNA--DISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIE-LQVKGT 86
           G   +   D +Q +             S +  P G Y ++        K     +++   
Sbjct: 4   GMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSN 63

Query: 87  LKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPS-------ECEKDDYCKKR 139
              +         G  + +   ++   +G G   G+  V  +         + D    + 
Sbjct: 64  TYWVYLAPGAYVKG-AIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKSDSTSLRM 122

Query: 140 PIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVT-APEESLNTDGIHVG 198
               + +            T        ++  G    + Q             TDG  + 
Sbjct: 123 WW--HNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEI- 179

Query: 199 RSSGVTITDSKIGTGDDCISIGDGTQQME-INKIDCGPGHGISVGSLGKYQNEQPVVGIR 257
                 + D      DD I I      +       C     I +G   +  +   +  + 
Sbjct: 180 -YPNSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLN 238

Query: 258 VRECNISNTSNGVRIKTWPAS---------YPGTASDLHFEDIKMNNVSNPILLDQVYCP 308
           V       +   V      AS             +  +   ++    +   +        
Sbjct: 239 VIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQN 298

Query: 309 HNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGP 368
                  V   V        N  GT  + +      + G+      +    +T       
Sbjct: 299 ---YKNFVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAISAWTIGGQKVTMEN-FQA 354

Query: 369 IKSECTNIQPKTSG 382
                 NI     G
Sbjct: 355 NSLGQFNIDGSYWG 368
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.87
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.85
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.85
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.84
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.83
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.76
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.68
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.64
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.61
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.47
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.4
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.31
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.03
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.02
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.91
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.91
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.7
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.46
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.46
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.4
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.23
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 96.8
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.66
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.64
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.56
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 93.51
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 93.45
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 92.43
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 92.41
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 86.95
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 80.78
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1e-61  Score=484.66  Aligned_cols=338  Identities=22%  Similarity=0.357  Sum_probs=294.8

Q ss_pred             hhccceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCceEEee-eeEecCCCCccEEEEEeeEEEeeCCc
Q 015254           17 SAAAALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQLS-PVTMEGPCKAAIELQVKGTLKALTDP   93 (410)
Q Consensus        17 ~~~~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~-~l~l~~~~~s~v~l~~~G~i~~~~~~   93 (410)
                      ..++..+|||+||||+||  +|||+|||+||+ ||+.  |++|+||+|+|++. +|.|+++  ++++|+++|+|++....
T Consensus        14 ~~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~--gg~V~iP~Gty~l~~~i~l~g~--~~~~l~~~G~i~~~~~~   88 (422)
T d1rmga_          14 TKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS--GGLVYIPSGNYALNTWVTLTGG--SATAIQLDGIIYRTGTA   88 (422)
T ss_dssp             HHHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB--TCEEEECSSEEEECSCEEEESC--EEEEEEECSEEEECCCC
T ss_pred             ccCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC--CCEEEECCCcEEEeCcEEEcCC--CceEEEEeEEEEeccCC
Confidence            344578999999999999  999999999994 7874  57999999999875 7999875  78899999999987665


Q ss_pred             cCccCCCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCe
Q 015254           94 ANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGA  173 (410)
Q Consensus        94 ~~~~~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~  173 (410)
                      ..|.  ..+....+.+.+.+.|.|+|||+|+.||..      ...+|.  ++.|.+|+|++|++++++|+|.|++.+..|
T Consensus        89 ~~~~--~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~------~~~~p~--~l~~~~~~n~~i~git~~nsp~~~i~i~~c  158 (422)
T d1rmga_          89 SGNM--IAVTDTTDFELFSSTSKGAVQGFGYVYHAE------GTYGAR--ILRLTDVTHFSVHDIILVDAPAFHFTMDTC  158 (422)
T ss_dssp             SSEE--EEEEEEEEEEEECSSSCCEEECCTHHHHTT------TCCCCE--EEEEEEEEEEEEEEEEEECCSSCSEEEEEE
T ss_pred             ccCE--EEeccCccEEEEEeecceEEecCcceecCC------CCCCCc--EEEEEeeeeeEEECcEecCCCceEEEEecc
Confidence            4332  233344455666778899999999999952      335788  999999999999999999999999999999


Q ss_pred             eeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCCCE
Q 015254          174 KNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPV  253 (410)
Q Consensus       174 ~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~~v  253 (410)
                      ++++|+|++|.++. .+|+||||+.+ +||+|+||++.++||||+++++++||+|+|++|..+||++|||+|   ....|
T Consensus       159 ~~v~i~nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g---~~~~V  233 (422)
T d1rmga_         159 SDGEVYNMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLG---ADTDV  233 (422)
T ss_dssp             EEEEEEEEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEEC---TTEEE
T ss_pred             ccEEEEeeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeecc---CCCCE
Confidence            99999999999864 47999999976 589999999999999999999999999999999999999999986   34679


Q ss_pred             EEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEe
Q 015254          254 VGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGT  333 (410)
Q Consensus       254 ~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~  333 (410)
                      +||+|+||++.++..|+++|++.+.  |.|+||+|+||+++++.+||.|++.|++...++   .+++.|+||+|+||+++
T Consensus       234 ~nV~v~n~~~~~s~~g~~ik~~~g~--G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~~---~~~v~isnIt~~Ni~GT  308 (422)
T d1rmga_         234 TDIVYRNVYTWSSNQMYMIKSNGGS--GTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA---GDGVQLNNITVKNWKGT  308 (422)
T ss_dssp             EEEEEEEEEEESSSCSEEEEEBBCC--EEEEEEEEEEEEEEEESCSEEEETBCTTSCCBS---SSCCEEEEEEEEEEEEE
T ss_pred             EEEEEEeEEEeCCCceEEEEEcCCC--ceecceEEEEEEEecccccEEEecccCCCCCCC---CCCeEEEEEEEEeEEEE
Confidence            9999999999999999999998654  899999999999999999999999998766543   45679999999999998


Q ss_pred             ec---CcceEEEecCCCCceecEEEEeEEEEecCCCCCCceeeeeccccC
Q 015254          334 SA---TAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKT  380 (410)
Q Consensus       334 ~~---~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~n~~~~~  380 (410)
                      ..   ...+++|.|++..||+||+|+||+++.++|. .+.+.|+|++|..
T Consensus       309 ~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~-~~~~~C~na~G~~  357 (422)
T d1rmga_         309 EANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS-SELYLCRSAYGSG  357 (422)
T ss_dssp             ESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSS-CEEEEEESEEEES
T ss_pred             ecCCcccccEEEEcCCCCCCcceEEEEEEEEcCCCC-CcceEEECceeeE
Confidence            75   3468999999999999999999999988875 5678999999865
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure