Citrus Sinensis ID: 015260

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410
MSEAKQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHccccccccccEEEEEEccccccccccccEEEEEEcccccccccccccccccHHHHHHccHHHHHHHHHHcccccEEEEEEEEccccccccccccccEEEEEEccccccHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEEcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEccccccccEcccccccHHHHHHHHHHHHcEEEEEccccEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEccccccccEEEEEEEEEEEEEEccccccHHHHHHHHHHHHcccccHHHHHcccccccccEEEEEEEEEEEcccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccc
MSEAKQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIedkvhdgvedgttlveenrktesggcktgkkKVKEKMSGTLNHHFKRYVALKVMYFGQrfygfasdgnmeptVESEIFKALEKTRLLVADkkeshysrcgrtdkgvssVGQVIAIYLRSNikecntnnasmgetvqeeqieDEIDYVRVLNRVlpkdirvigwspaptdfsarfscISREYKYFFWRENLNLSAMESAGkkfvgehdfrnfckmdaanvhnykrhvtsfeispcyisfegnQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLldtngiprkpqynmapeiplvlqscdfdglkftcsldaghDLRLHLRNECQVYQLQAAIFHEALLNclplangleigSSLIHLH
MSEAKQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIedkvhdgvedgttlveenrktesggcktgkkkvkekmsgtlnhHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLvadkkeshysrcgrtdkgvssvgQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKdirvigwspaptdfsarfSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH
MSEAKQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESggcktgkkkvkekmsgTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH
*******************************KLLSKLSLCRCEKIEDKV***********************************TLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN*********EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLI***
*****************ALQNRVKELE*************************************************************HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPL**********IH**
************QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH
****KQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVED****************************GTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI******************IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSS*I***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query410 2.2.26 [Sep-21-2011]
Q3SX07481 tRNA pseudouridine(38/39) yes no 0.790 0.673 0.438 4e-73
Q9JI38481 tRNA pseudouridine(38/39) yes no 0.780 0.665 0.430 9e-72
Q9BZE2481 tRNA pseudouridine(38/39) yes no 0.882 0.752 0.392 1e-70
P31115442 tRNA pseudouridine(38/39) yes no 0.782 0.726 0.374 5e-58
Q9UTB3450 Putative tRNA pseudouridi yes no 0.607 0.553 0.422 3e-56
Q09524402 Probable tRNA pseudouridi yes no 0.680 0.694 0.367 2e-46
Q2NHB4274 tRNA pseudouridine syntha yes no 0.617 0.923 0.312 2e-29
C6A238266 tRNA pseudouridine syntha yes no 0.643 0.992 0.276 4e-28
A0B7V0267 tRNA pseudouridine syntha yes no 0.497 0.764 0.341 6e-28
A3CXX4270 tRNA pseudouridine syntha yes no 0.592 0.9 0.314 2e-27
>sp|Q3SX07|PUS3_BOVIN tRNA pseudouridine(38/39) synthase OS=Bos taurus GN=PUS3 PE=2 SV=1 Back     alignment and function desciption
 Score =  275 bits (703), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 149/340 (43%), Positives = 215/340 (63%), Gaps = 16/340 (4%)

Query: 27  EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
           E D  ++ ++  L R +++E +V    ++     + N +  S G        K K +   
Sbjct: 3   ENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKDSNIRENSSGAGG-----KPKRAFDF 57

Query: 87  NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
           + H +R+VALK+ Y G  + GFAS  N   T+E ++F+AL KTRL V +++ S+Y RCGR
Sbjct: 58  SAHGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGR 116

Query: 147 TDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
           TDKGVS+ GQVI++ LRS+I K  ++ + ++   V +  +  EI Y  +LNRVLP DIRV
Sbjct: 117 TDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRV 174

Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
           + W+P  T FSARFSC+ R Y+YFF R NL++  M  A +K+VG HDFRN CKMD AN V
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGV 234

Query: 265 HNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
            N++R + S ++     +       E  QLC  ++ G AFL+HQVRCM+AVLF+IGQG+E
Sbjct: 235 INFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGME 294

Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
             +VI+ LL+    P+KPQY+MA E PLVL  C F+ +K+
Sbjct: 295 KPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 334
Formation of pseudouridine at position 39 in the anticodon stem and loop of transfer RNAs.
Bos taurus (taxid: 9913)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 4EC: 5
>sp|Q9JI38|PUS3_MOUSE tRNA pseudouridine(38/39) synthase OS=Mus musculus GN=Pus3 PE=1 SV=2 Back     alignment and function description
>sp|Q9BZE2|PUS3_HUMAN tRNA pseudouridine(38/39) synthase OS=Homo sapiens GN=PUS3 PE=1 SV=3 Back     alignment and function description
>sp|P31115|PUS3_YEAST tRNA pseudouridine(38/39) synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DEG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UTB3|YL85_SCHPO Putative tRNA pseudouridine synthase C25B8.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25B8.05 PE=3 SV=1 Back     alignment and function description
>sp|Q09524|TG124_CAEEL Probable tRNA pseudouridine synthase tag-124 OS=Caenorhabditis elegans GN=tag-124 PE=3 SV=1 Back     alignment and function description
>sp|Q2NHB4|TRUA_METST tRNA pseudouridine synthase A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=truA PE=3 SV=1 Back     alignment and function description
>sp|C6A238|TRUA_THESM tRNA pseudouridine synthase A OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=truA PE=3 SV=1 Back     alignment and function description
>sp|A0B7V0|TRUA_METTP tRNA pseudouridine synthase A OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=truA PE=3 SV=1 Back     alignment and function description
>sp|A3CXX4|TRUA_METMJ tRNA pseudouridine synthase A OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=truA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
297739353466 unnamed protein product [Vitis vinifera] 0.963 0.847 0.667 1e-159
255572341438 pseudouridylate synthase, putative [Rici 0.924 0.865 0.689 1e-158
356534023426 PREDICTED: tRNA pseudouridine synthase 3 0.934 0.899 0.661 1e-151
356574565426 PREDICTED: tRNA pseudouridine synthase 3 0.914 0.880 0.676 1e-151
224066589465 predicted protein [Populus trichocarpa] 0.968 0.853 0.634 1e-149
449446486455 PREDICTED: tRNA pseudouridine(38/39) syn 0.917 0.826 0.649 1e-136
297846396443 hypothetical protein ARALYDRAFT_473569 [ 0.904 0.837 0.608 1e-134
18399149446 pseudouridine synthase-like protein [Ara 0.921 0.847 0.592 1e-132
10086461442 Putative pseudouridine synthase [Arabido 0.909 0.843 0.569 1e-127
194706182457 unknown [Zea mays] gi|195612012|gb|ACG27 0.914 0.820 0.537 1e-118
>gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 281/421 (66%), Positives = 329/421 (78%), Gaps = 26/421 (6%)

Query: 7   ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKT 66
           +LIS+LQSQL +L+NRV+ELEA+NAKL S++S C C KI +K+     D  +LV+++ + 
Sbjct: 17  DLISTLQSQLLSLRNRVQELEAENAKLSSQISSCHCHKIREKL-----DSISLVQQSDEL 71

Query: 67  ESGGCKTGKKKVKEKMSGT----LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEI 122
           + GG +T KKK+K K+ GT    +NH  KRYVALKVMYFG RFYGFAS+ +M+PTVESEI
Sbjct: 72  KPGGDETRKKKLKGKIPGTNMRTMNHISKRYVALKVMYFGPRFYGFASEAHMDPTVESEI 131

Query: 123 FKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQE 182
           FKALEKT L V DKKE  YSRCGRTDKGVSSVGQVIA++LRSN+KE      +  E V E
Sbjct: 132 FKALEKTWLAVGDKKELQYSRCGRTDKGVSSVGQVIALFLRSNLKEIGAREENSKEVVPE 191

Query: 183 EQIED-----------------EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISRE 225
           EQ E+                 EIDY+RVLNRVLPKDIRV+GW P P  F ARFSC+SRE
Sbjct: 192 EQYEERREVKDEGGGDSLASEGEIDYMRVLNRVLPKDIRVMGWCPVPIGFHARFSCLSRE 251

Query: 226 YKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG 285
           YKYFFWR NLN+ AMESAGKKFVGEHDFRNFCKMDA NVHNY+RH+ SFEI+P    ++G
Sbjct: 252 YKYFFWRGNLNILAMESAGKKFVGEHDFRNFCKMDAVNVHNYRRHIISFEIAPTNNRYDG 311

Query: 286 NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIP 345
           NQL AIKI+GSAFLWHQVRCMVAVLFMIGQGLES DV+++LLDT    RKPQY MAPEIP
Sbjct: 312 NQLWAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIP 371

Query: 346 LVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSS 405
           LVL+SC+F+GLKF CS DAG  LR+HL NEC+ YQLQAAIFHEALL+CLP AN  E  +S
Sbjct: 372 LVLESCEFEGLKFICSSDAGQALRMHLENECRTYQLQAAIFHEALLSCLPSANSAEKQNS 431

Query: 406 L 406
           L
Sbjct: 432 L 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis] gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356534023|ref|XP_003535557.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356574565|ref|XP_003555416.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224066589|ref|XP_002302151.1| predicted protein [Populus trichocarpa] gi|222843877|gb|EEE81424.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449446486|ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp. lyrata] gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18399149|ref|NP_564438.1| pseudouridine synthase-like protein [Arabidopsis thaliana] gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana] gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana] gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10086461|gb|AAG12521.1|AC015446_2 Putative pseudouridine synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|194706182|gb|ACF87175.1| unknown [Zea mays] gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays] gi|414867030|tpg|DAA45587.1| TPA: pseudouridylate synthase isoform 1 [Zea mays] gi|414867031|tpg|DAA45588.1| TPA: pseudouridylate synthase isoform 2 [Zea mays] gi|414867032|tpg|DAA45589.1| TPA: pseudouridylate synthase isoform 3 [Zea mays] gi|414867033|tpg|DAA45590.1| TPA: pseudouridylate synthase isoform 4 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query410
TAIR|locus:2009021446 AT1G34150 [Arabidopsis thalian 0.921 0.847 0.597 9.2e-123
UNIPROTKB|F1P3X5379 PUS3 "tRNA pseudouridine synth 0.756 0.817 0.443 4.7e-72
UNIPROTKB|F1N5P3481 PUS3 "tRNA pseudouridine synth 0.763 0.650 0.447 2.6e-69
UNIPROTKB|Q3SX07481 PUS3 "tRNA pseudouridine(38/39 0.763 0.650 0.447 2.6e-69
RGD|1310757479 Pus3 "pseudouridylate synthase 0.685 0.586 0.465 4.7e-68
MGI|MGI:1914299481 Pus3 "pseudouridine synthase 3 0.648 0.553 0.480 7.7e-68
UNIPROTKB|E2RGS6480 PUS3 "tRNA pseudouridine synth 0.763 0.652 0.44 9.8e-68
UNIPROTKB|Q9BZE2481 PUS3 "tRNA pseudouridine(38/39 0.863 0.735 0.401 9.8e-68
UNIPROTKB|F1S759479 LOC100739830 "tRNA pseudouridi 0.760 0.651 0.438 5.8e-66
UNIPROTKB|F1RVF1479 LOC100739830 "tRNA pseudouridi 0.760 0.651 0.435 5.2e-65
TAIR|locus:2009021 AT1G34150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 236/395 (59%), Positives = 290/395 (73%)

Query:    13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHD-GVEDGTTLVEENRKTESXXX 71
             +++L  L+NRVKELE +NAKLLS++S C+C+++E K HD  + D ++LV   R  +    
Sbjct:    22 ETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVK-HDRSLSDSSSLVRRRRVRKGDKN 80

Query:    72 XXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
                                KRYVALK+MYFG+RFYGF+++  MEP++ESE+FKALE+TRL
Sbjct:    81 SIPSHLIS-----------KRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRL 129

Query:   132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC-NTNNASMGETVQEEQIEDEID 190
             LV DKK+S YSRCGRTDKGVSS GQVIA++LRS +K     + A +     E     E D
Sbjct:   130 LVGDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERP---EYD 186

Query:   191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
             YVRVLNR LP DIRVIGWSPAP DF ARFSC +REYKYFFWR+NLNLSAM+ AGKKF+GE
Sbjct:   187 YVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKFIGE 246

Query:   251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
             HDFRNFCKMD ANVH Y R VT FE+SPC  S EG+QLC   +RGSAFLWHQ+RCMVAVL
Sbjct:   247 HDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVL 306

Query:   311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRL 370
             FMIGQG+ES+DVI++LLDT   PRKPQY +A EIPLVL++C+F+ + F CS  A   LR 
Sbjct:   307 FMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVDFICSPGAAESLRS 366

Query:   371 HLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSS 405
             H +NE   YQL++ I+ EAL NCLPL+N +    S
Sbjct:   367 HFKNESLTYQLESVIYQEALRNCLPLSNNVSTEES 401
GO:0001522 "pseudouridine synthesis" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0009451 "RNA modification" evidence=IEA
GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS
GO:0006730 "one-carbon metabolic process" evidence=RCA
UNIPROTKB|F1P3X5 PUS3 "tRNA pseudouridine synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5P3 PUS3 "tRNA pseudouridine synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SX07 PUS3 "tRNA pseudouridine(38/39) synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310757 Pus3 "pseudouridylate synthase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1914299 Pus3 "pseudouridine synthase 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGS6 PUS3 "tRNA pseudouridine synthase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BZE2 PUS3 "tRNA pseudouridine(38/39) synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S759 LOC100739830 "tRNA pseudouridine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVF1 LOC100739830 "tRNA pseudouridine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer5.4.99.120.737
3rd Layer5.4.990.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
cd02569256 cd02569, PseudoU_synth_ScPus3, Pseudouridine synth 1e-136
COG0101266 COG0101, TruA, Pseudouridylate synthase [Translati 2e-68
TIGR00071227 TIGR00071, hisT_truA, tRNA pseudouridine(38-40) sy 3e-57
cd00497215 cd00497, PseudoU_synth_TruA_like, Pseudouridine sy 1e-55
PRK00021244 PRK00021, truA, tRNA pseudouridine synthase A; Val 5e-51
PRK14589265 PRK14589, PRK14589, tRNA pseudouridine synthase AC 5e-48
cd02570239 cd02570, PseudoU_synth_EcTruA, Eukaryotic and bact 2e-44
cd02866219 cd02866, PseudoU_synth_TruA_Archea, Archeal pseudo 3e-43
cd02568245 cd02568, PseudoU_synth_PUS1_PUS2, Pseudouridine sy 9e-43
PRK14586245 PRK14586, PRK14586, tRNA pseudouridine synthase AC 2e-22
pfam01416103 pfam01416, PseudoU_synth_1, tRNA pseudouridine syn 6e-22
PRK14588272 PRK14588, PRK14588, tRNA pseudouridine synthase AC 6e-21
PRK12434245 PRK12434, PRK12434, tRNA pseudouridine synthase A; 3e-20
PLN03078 513 PLN03078, PLN03078, Putative tRNA pseudouridine sy 8e-09
PRK14587256 PRK14587, PRK14587, tRNA pseudouridine synthase AC 6e-08
>gnl|CDD|211336 cd02569, PseudoU_synth_ScPus3, Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like Back     alignment and domain information 
 Score =  390 bits (1004), Expect = e-136
 Identities = 141/259 (54%), Positives = 179/259 (69%), Gaps = 4/259 (1%)

Query: 96  LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
           L+  Y G  + GFA       TVE  +F+ALEKTRL + D++ S+YSRCGRTDKGVS+ G
Sbjct: 1   LRFAYLGWNYNGFAVQEETTNTVEETLFEALEKTRL-IEDRQTSNYSRCGRTDKGVSAFG 59

Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
           QVI++ +RSN+K  +  + S    V+    E+E+ Y ++LNRVLP DIR++ W+P P DF
Sbjct: 60  QVISLDVRSNLKPEDGLDPSTD--VKSTADEEELPYCKILNRVLPPDIRILAWAPVPPDF 117

Query: 216 SARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSF 274
           SARFSC+SR Y+YFF + +L++  M  A K  +GEHDFRNFCKMD AN V NY R V S 
Sbjct: 118 SARFSCVSRTYRYFFPKGDLDIELMRKAAKLLLGEHDFRNFCKMDVANQVTNYVRRVLSA 177

Query: 275 EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPR 334
           E+ P     +G+ L   ++RGSAFLWHQVRCM+AVLF+IGQGLE   VI  LLD    PR
Sbjct: 178 EVEPVDQHPDGDGLYYFEVRGSAFLWHQVRCMMAVLFLIGQGLEPPSVISQLLDVEKNPR 237

Query: 335 KPQYNMAPEIPLVLQSCDF 353
           KPQY MA E+PLVL  C F
Sbjct: 238 KPQYTMASEVPLVLYDCGF 256

This group consists of eukaryotic pseudouridine synthases similar to S. cerevisiae Pus3p, mouse Pus3p and, human PUS2. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Mouse Pus3p has been shown to makes psi38 and, possibly also psi 39, in tRNAs. Psi38 and psi39 are highly conserved in tRNAs from eubacteria, archea and eukarya. Length = 256
>gnl|CDD|223179 COG0101, TruA, Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232810 TIGR00071, hisT_truA, tRNA pseudouridine(38-40) synthase Back     alignment and domain information
>gnl|CDD|211322 cd00497, PseudoU_synth_TruA_like, Pseudouridine synthase, TruA family Back     alignment and domain information
>gnl|CDD|234577 PRK00021, truA, tRNA pseudouridine synthase A; Validated Back     alignment and domain information
>gnl|CDD|237759 PRK14589, PRK14589, tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>gnl|CDD|211337 cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E Back     alignment and domain information
>gnl|CDD|211343 cd02866, PseudoU_synth_TruA_Archea, Archeal pseudouridine synthases Back     alignment and domain information
>gnl|CDD|211335 cd02568, PseudoU_synth_PUS1_PUS2, Pseudouridine synthase, PUS1/ PUS2 like Back     alignment and domain information
>gnl|CDD|173050 PRK14586, PRK14586, tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>gnl|CDD|216487 pfam01416, PseudoU_synth_1, tRNA pseudouridine synthase Back     alignment and domain information
>gnl|CDD|173052 PRK14588, PRK14588, tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>gnl|CDD|171495 PRK12434, PRK12434, tRNA pseudouridine synthase A; Reviewed Back     alignment and domain information
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase; Provisional Back     alignment and domain information
>gnl|CDD|173051 PRK14587, PRK14587, tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 410
KOG2554425 consensus Pseudouridylate synthase [Translation, r 100.0
PRK14589265 tRNA pseudouridine synthase ACD; Provisional 100.0
COG0101266 TruA Pseudouridylate synthase [Translation, riboso 100.0
cd02569256 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Ps 100.0
PRK12434245 tRNA pseudouridine synthase A; Reviewed 100.0
PRK00021244 truA tRNA pseudouridine synthase A; Validated 100.0
PRK14588272 tRNA pseudouridine synthase ACD; Provisional 100.0
TIGR00071227 hisT_truA pseudouridylate synthase I. universal so 100.0
PRK14586245 tRNA pseudouridine synthase ACD; Provisional 100.0
cd02866221 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Ps 100.0
PRK14587256 tRNA pseudouridine synthase ACD; Provisional 100.0
cd02570239 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudou 100.0
cd00497224 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudo 100.0
cd02568245 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: P 100.0
PLN03078513 Putative tRNA pseudouridine synthase; Provisional 100.0
KOG2553416 consensus Pseudouridylate synthase [Translation, r 100.0
KOG4393295 consensus Predicted pseudouridylate synthase [RNA 100.0
PF01416105 PseudoU_synth_1: tRNA pseudouridine synthase; Inte 99.88
PF01416105 PseudoU_synth_1: tRNA pseudouridine synthase; Inte 98.07
PF10105187 DUF2344: Uncharacterized protein conserved in bact 96.12
cd0129187 PseudoU_synth PseudoU_synth: Pseudouridine synthas 90.23
TIGR01213388 conserved hypothetical protein TIGR01213. Members 88.01
PF0116659 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 85.13
TIGR0244965 conserved hypothetical protein TIGR02449. Members 81.27
>KOG2554 consensus Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-89  Score=671.42  Aligned_cols=340  Identities=41%  Similarity=0.716  Sum_probs=288.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccCCCCCCccccccccccCCCCcccccccccccCCCCccccccceE
Q 015260           15 QLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYV   94 (410)
Q Consensus        15 ~~~~l~~r~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~v   94 (410)
                      +.+.|+.|+-||+..++..+.+.-.       ..    ++.       ....++++.    +++|+.+.|||+.+++|+|
T Consensus        11 ~~~~l~kr~~el~~~~~p~~~~~~~-------~~----~~~-------~~~~~~~~s----~~~kk~~~fdfs~~~kR~I   68 (425)
T KOG2554|consen   11 MKNILIKRAVELDNWNKPEKKQHIE-------NE----AKS-------KVSQSANTS----RKKKKKKRFDFSAHSKRHI   68 (425)
T ss_pred             HHHHHHHHHHHhhccCCcccccchh-------hH----HHh-------hhchhhccc----cccccccccchhcccceEE
Confidence            6789999999999999865544221       10    000       000111111    1112235699999999999


Q ss_pred             EEEEEEeCCCceeeeecCCCC-CcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcCC
Q 015260           95 ALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN  173 (410)
Q Consensus        95 aL~iaY~Gt~Y~G~q~Q~~~~-~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~~  173 (410)
                      ||+|+|+||+|+|++.|+++. +|||+.|++||.+++| ++++++++|+|||||||||||+|||+|++++|.++.++...
T Consensus        69 AlkiaY~GW~Y~Gla~Qe~T~~~TIEg~l~eAL~kt~L-ies~~~~~ysRCGRTDKGVSAfgQviSl~lRS~~p~~~s~~  147 (425)
T KOG2554|consen   69 ALKIAYLGWNYQGLAPQEHTNNPTIEGKLFEALKKTRL-IESRQTCNYSRCGRTDKGVSAFGQVISLVLRSRIPMPDSQR  147 (425)
T ss_pred             EEEEEEeccccCceecCCCCCCcchHHHHHHHHHhhhc-ccCcccccccccCCcccchhhhhheeeeeeeccCCCchhhh
Confidence            999999999999999997654 5999999999999998 67899999999999999999999999999999987642211


Q ss_pred             CCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCCCCHHHHHHHHhhccceecc
Q 015260          174 ASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF  253 (410)
Q Consensus       174 ~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~LDie~M~~Aak~fvGtHDF  253 (410)
                      .+    . ...+..|++|+.+||++||+||||.+|+|||+.|+|||+|.+|+|+|+|+..+|||++|++||.+|+|+|||
T Consensus       148 ~~----~-~~a~~~Ei~Y~~mLN~vLP~dIRi~awapvp~~FsARFsC~~RtYrY~F~k~dLdI~~M~kAA~l~vGe~DF  222 (425)
T KOG2554|consen  148 DA----V-ATADSEEIPYVHMLNRVLPPDIRIVAWAPVPPTFSARFSCVQRTYRYYFPKKDLDIDRMSKAASLLVGEHDF  222 (425)
T ss_pred             cc----c-cccccccccHHHHHhccCCCcceEEEEecCCCCccceeehhhceeeEeccCCCcCHHHHHHHHHHHhcchhh
Confidence            11    0 112346889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeecCCCC-cccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCC
Q 015260          254 RNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI  332 (410)
Q Consensus       254 ~NF~k~~~~~-~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~  332 (410)
                      +||||+|..+ ++||.|+|.++.|..+..   -..+|+|+|.|++||||||||||++|++||||.+.|+.|.+|||.+++
T Consensus       223 rNFCK~D~~n~vtny~Rti~s~kV~~~~~---~~~my~ldi~g~AFLwHqVRcimaiL~liGq~~E~p~lI~dLldIek~  299 (425)
T KOG2554|consen  223 RNFCKIDVSNGVTNYERTILSAKVEDVGQ---TPGMYYLDIQGSAFLWHQVRCIMAILFLIGQGLEQPSLISDLLDIEKN  299 (425)
T ss_pred             hhhhhhcchhhhHHHHhhhheeeEEEcCC---CCceEEEEeechhhHHHHHHHHHHHHHHhccccCCchHHHHHHhcccC
Confidence            9999999877 588999999999987642   234999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCCeeeeeCCC--CCCCccccchhhHHHHHHHHHHH----HHHHHHHHH
Q 015260          333 PRKPQYNMAPEIPLVLQSCDF--DGLKFTCSLDAGHDLRLHLRNEC----QVYQLQAAI  385 (410)
Q Consensus       333 ~rk~~~~~AP~~gL~L~dv~Y--~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~a~i  385 (410)
                      |.+|+|.||...||+|+||.|  ++++|..+.++.+...++++..|    ..++..+++
T Consensus       300 P~kPqY~mA~~~PL~LydC~f~~e~~ew~~~~~sd~~a~~~l~~t~~~L~~~~q~~~~~  358 (425)
T KOG2554|consen  300 PQKPQYTMASDYPLELYDCDFHRENVEWRHDTESDQIAPKILKITWENLVEHLQNGSAM  358 (425)
T ss_pred             CCCceeeeccCCceEEEecCCCCccccccccccccccchhHHHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999  99999999998888888888876    344444433

>PRK14589 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02569 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like Back     alignment and domain information
>PRK12434 tRNA pseudouridine synthase A; Reviewed Back     alignment and domain information
>PRK00021 truA tRNA pseudouridine synthase A; Validated Back     alignment and domain information
>PRK14588 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>TIGR00071 hisT_truA pseudouridylate synthase I Back     alignment and domain information
>PRK14586 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>cd02866 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Pseudouridine synthase, Back     alignment and domain information
>PRK14587 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like Back     alignment and domain information
>cd00497 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudouridine synthase, TruA family Back     alignment and domain information
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like Back     alignment and domain information
>PLN03078 Putative tRNA pseudouridine synthase; Provisional Back     alignment and domain information
>KOG2553 consensus Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4393 consensus Predicted pseudouridylate synthase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01416 PseudoU_synth_1: tRNA pseudouridine synthase; InterPro: IPR020097 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones Back     alignment and domain information
>PF01416 PseudoU_synth_1: tRNA pseudouridine synthase; InterPro: IPR020097 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones Back     alignment and domain information
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function Back     alignment and domain information
>cd01291 PseudoU_synth PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi) Back     alignment and domain information
>TIGR01213 conserved hypothetical protein TIGR01213 Back     alignment and domain information
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
1vs3_A249 Crystal Structure Of The Trna Pseudouridine Synthas 1e-12
2nqp_A270 Crystal Structure Of Pseudoudirinde Synthase Trua I 2e-10
1dj0_A264 The Crystal Structure Of E. Coli Pseudouridine Synt 3e-10
>pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249 Back     alignment and structure 
Iteration: 1

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 96/248 (38%), Gaps = 51/248 (20%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIA 159
           Y G  F G    G    TV+ E+ +AL     L            GRTD GV ++     
Sbjct: 10  YDGTLFAGLQRQGRGLRTVQGELERALPGIGAL------PKAVAAGRTDAGVHALAMPFH 63
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
           + + S I       A                    LNR+LP+D++V+G      DF AR 
Sbjct: 64  VDVESAIPVEKVPEA--------------------LNRLLPEDLKVVGAREVAPDFHARK 103
Query: 220 SCISREYKY---------------FFW-RENLNLSAMESAGKKFVGEHDFRNFCKMDAAN 263
             + R Y+Y                 W R  L+L AME A    +G H+F  F K +   
Sbjct: 104 DALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEE--- 160
Query: 264 VHNYKRHVTSFEISPCYISFEGNQLCAIKI--RGSAFLWHQVRCMVAVLFMIGQGLESID 321
               +R +    +       EG     +++  RG +FL  QVR MV  L  +G G    +
Sbjct: 161 TRPGERELLEARLQVA----EGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPE 216
Query: 322 VIESLLDT 329
            ++++L T
Sbjct: 217 SLKAILKT 224
>pdb|2NQP|A Chain A, Crystal Structure Of Pseudoudirinde Synthase Trua In Complex With Leucyl Trna Length = 270 Back     alignment and structure
>pdb|1DJ0|A Chain A, The Crystal Structure Of E. Coli Pseudouridine Synthase I At 1.5 Angstrom Resolution Length = 264 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query410
1vs3_A249 TRNA pseudouridine synthase A; TRUA, tRNA modifica 6e-44
1dj0_A264 Pseudouridine synthase I; alpha/beta fold, RNA-bin 6e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus} Length = 249 Back     alignment and structure
 Score =  152 bits (387), Expect = 6e-44
 Identities = 61/254 (24%), Positives = 99/254 (38%), Gaps = 48/254 (18%)

Query: 91  KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
           +R   L   Y G  F G    G    TV+ E+ +AL      +    ++  +  GRTD G
Sbjct: 2   RRL-LLLCEYDGTLFAGLQRQGRGLRTVQGELERALPG----IGALPKAVAA--GRTDAG 54

Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
           V ++     + + S I                            LNR+LP+D++V+G   
Sbjct: 55  VHALAMPFHVDVESAI--------------------PVEKVPEALNRLLPEDLKVVGARE 94

Query: 211 APTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFR 254
              DF AR   + R Y+Y                 + R  L+L AME A    +G H+F 
Sbjct: 95  VAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFL 154

Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
            F K +       +      +++       G ++  +  RG +FL  QVR MV  L  +G
Sbjct: 155 GFAKEETR-PGERELLEARLQVAE---GEAGLEVR-LYFRGKSFLRGQVRGMVGTLLEVG 209

Query: 315 QGLESIDVIESLLD 328
            G    + ++++L 
Sbjct: 210 LGKRPPESLKAILK 223
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A Length = 264 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
1dj0_A264 Pseudouridine synthase I; alpha/beta fold, RNA-bin 100.0
1vs3_A249 TRNA pseudouridine synthase A; TRUA, tRNA modifica 100.0
1kd8_A36 GABH AIV, GCN4 acid base heterodimer acid-D12IA16V 94.79
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 94.15
3m48_A33 General control protein GCN4; leucine zipper, synt 93.08
1uo4_A34 General control protein GCN4; four helix bundle, c 92.01
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 91.59
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 91.53
2wq1_A33 General control protein GCN4; TAA, nucleus, coiled 90.89
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 90.4
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 87.02
2bni_A34 General control protein GCN4; four helix bundle, a 86.66
1gk7_A39 Vimentin; intermediate filament, heptad repeat; 1. 86.2
2hy6_A34 General control protein GCN4; protein design, para 86.13
2v9k_A530 Uncharacterized protein FLJ32312; pseudouridine sy 83.56
1dip_A78 Delta-sleep-inducing peptide immunoreactive peptid 82.89
2r2v_A34 GCN4 leucine zipper; coiled coils, anti-parallel t 81.41
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A Back     alignment and structure
Probab=100.00  E-value=5.7e-74  Score=556.76  Aligned_cols=234  Identities=27%  Similarity=0.421  Sum_probs=212.6

Q ss_pred             ccceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCcccc
Q 015260           90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC  169 (410)
Q Consensus        90 ~kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~  169 (410)
                      |+++|+|.|+|+||+|+|||+||+ .+|||++|++||.++.     .+++.+++|||||+||||+|||+||++++.+   
T Consensus         2 Pm~r~~l~i~YdGt~y~GwQ~Q~~-~~TVq~~Le~AL~~~~-----~~~v~~~~agRTDaGVHA~gqv~~f~~~~~~---   72 (264)
T 1dj0_A            2 PVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVA-----NEPITVFCAGRTDAGVHGTGQVVHFETTALR---   72 (264)
T ss_dssp             CCEEEEEEEEECCTTSSCSCCTTC-SSCHHHHHHHHHHHHH-----TSCCCEEESSCCCTTCEEEEEEEEEEESCCC---
T ss_pred             CccEEEEEEEEeCCCceeEEECcC-CCCHHHHHHHHHHHHh-----CCCeEEEEeccCCCCCchhhEEEEEEECCCC---
Confidence            578999999999999999999998 5899999999999972     2478999999999999999999999997654   


Q ss_pred             CcCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeC----------------C
Q 015260          170 NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------E  233 (410)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~----------------~  233 (410)
                                       ++..|+..||+.||+||+|++|.+||++|||||+|++|+|+|+|+.                .
T Consensus        73 -----------------~~~~~~~~lN~~LP~dI~V~~~~~V~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~  135 (264)
T 1dj0_A           73 -----------------KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE  135 (264)
T ss_dssp             -----------------CHHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCS
T ss_pred             -----------------CHHHHHHHHHhhCCcCeEEEEEEeCCCCCCcccccccEEEEEEEccCCCCChhHcCceEeeCC
Confidence                             2357899999999999999999999999999999999999999963                4


Q ss_pred             CCCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHH
Q 015260          234 NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI  313 (410)
Q Consensus       234 ~LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~V  313 (410)
                      +||+++|++||+.|+|+|||+|||+.+. +.++++|+|.+++|..      .++++.|+|+|+||||||||+|||+|++|
T Consensus       136 ~lD~~~M~~aa~~l~G~HDF~~F~~~~~-~~~s~vR~I~~~~v~~------~~~~i~~~i~g~~FL~~mVR~mvG~L~~v  208 (264)
T 1dj0_A          136 PLDAERMHRAAQCLLGENDFTSFRAVQC-QSRTPWRNVMHINVTR------HGPYVVVDIKANAFVHHMVRNIVGSLMEV  208 (264)
T ss_dssp             CCCHHHHHHHHGGGCEEEECGGGCCTTC-CCSCCEEEEEEEEEEE------ETTEEEEEEEESCCCTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCcccHHHhccCCC-CCCCcEEEEEEEEEEE------CCCEEEEEEEEchHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999998764 4578999999999975      24799999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCCCCCCcc
Q 015260          314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT  359 (410)
Q Consensus       314 G~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y~~~~~~  359 (410)
                      |+|.+++++|+++|+.++  +....++|||+||+|++|.|+ .+|.
T Consensus       209 G~G~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~V~Y~-~~~~  251 (264)
T 1dj0_A          209 GAHNQPESWIAELLAAKD--RTLAAATAKAEGLYLVAVDYP-DRYD  251 (264)
T ss_dssp             HTTSSCTTHHHHHHHHCC--GGGSCCCCCSTTEEEEEEECC-GGGC
T ss_pred             HCCCCCHHHHHHHHhCCC--cccCcCccCCCCcEEeeeccC-chhc
Confidence            999999999999999864  566889999999999999995 3443
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus} Back     alignment and structure
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ... Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ... Back     alignment and structure
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A Back     alignment and structure
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A Back     alignment and structure
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} Back     alignment and structure
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1 Back     alignment and structure
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 410
d1dj0a_264 d.265.1.1 (A:) Pseudouridine synthase I TruA {Esch 4e-25
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]} Length = 264 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase I TruA
domain: Pseudouridine synthase I TruA
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (251), Expect = 4e-25
 Identities = 48/264 (18%), Positives = 87/264 (32%), Gaps = 19/264 (7%)

Query: 91  KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
              +AL + Y G ++YG+     +  +V+ ++ KAL +        +       GRTD G
Sbjct: 3   VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQ-----VANEPITVFCAGRTDAG 56

Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
           V   GQV+     +  K+                         V +    +         
Sbjct: 57  VHGTGQVVHFETTALRKDAAWTLGVNA---NLPGDIAVRWVKTVPDDFHARFSATARRYR 113

Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
               ++ R            + E L+   M  A +  +GE+DF +F  +   +   ++  
Sbjct: 114 -YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNV 172

Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
           +                   + I+ +AF+ H VR +V  L  +G   +    I  LL   
Sbjct: 173 M-------HINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAK 225

Query: 331 GIPRKPQYNMAPEIPLVLQSCDFD 354
              R      A    L L + D+ 
Sbjct: 226 --DRTLAAATAKAEGLYLVAVDYP 247

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query410
d1dj0a_264 Pseudouridine synthase I TruA {Escherichia coli [T 100.0
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase I TruA
domain: Pseudouridine synthase I TruA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-69  Score=522.29  Aligned_cols=231  Identities=27%  Similarity=0.420  Sum_probs=208.8

Q ss_pred             ccceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCcccc
Q 015260           90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC  169 (410)
Q Consensus        90 ~kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~  169 (410)
                      +++||||+|+|+||+|+|||.|++ .+|||++|++||.+++     .+++.+.+|||||+||||++||++|++....   
T Consensus         2 ~~~r~al~i~Y~Gt~f~G~Q~Q~~-~~TVq~~Le~aL~~~~-----~~~~~~~~agRTD~GVhA~~qv~~~~~~~~~---   72 (264)
T d1dj0a_           2 PVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVA-----NEPITVFCAGRTDAGVHGTGQVVHFETTALR---   72 (264)
T ss_dssp             CCEEEEEEEEECCTTSSCSCCTTC-SSCHHHHHHHHHHHHH-----TSCCCEEESSCCCTTCEEEEEEEEEEESCCC---
T ss_pred             CcEEEEEEEEEECCCeeeEeECcC-CCCHHHHHHHHHHHhh-----CCCeEEEEeecccCCcceeeEEEEEeeccch---
Confidence            578999999999999999999998 5899999999999963     3578999999999999999999999987543   


Q ss_pred             CcCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeC----------------C
Q 015260          170 NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------E  233 (410)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~----------------~  233 (410)
                                       +...+...||+.||+||+|+++.+||++|||||+|.+|+|+|+++.                .
T Consensus        73 -----------------~~~~~~~~lN~~Lp~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~  135 (264)
T d1dj0a_          73 -----------------KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE  135 (264)
T ss_dssp             -----------------CHHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCS
T ss_pred             -----------------hhhhhhcccccccccccccccceeccccccchhhhhhcccceeeccccccccccccccccccC
Confidence                             2357889999999999999999999999999999999999999853                4


Q ss_pred             CCCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHH
Q 015260          234 NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI  313 (410)
Q Consensus       234 ~LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~V  313 (410)
                      .+|+++|++|++.|+|+|||+|||+.+.. ..+++|+|..+++..      ..+++.|+|+|+||||||||+|||+|++|
T Consensus       136 ~ld~~~m~~a~~~~~G~hdF~~F~~~~~~-~~~~~r~i~~~~~~~------~~~~i~i~i~g~sFL~~qVR~mvg~ll~v  208 (264)
T d1dj0a_         136 PLDAERMHRAAQCLLGENDFTSFRAVQCQ-SRTPWRNVMHINVTR------HGPYVVVDIKANAFVHHMVRNIVGSLMEV  208 (264)
T ss_dssp             CCCHHHHHHHHGGGCEEEECGGGCCTTCC-CSCCEEEEEEEEEEE------ETTEEEEEEEESCCCTTHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHhhccCccccccccccccc-CCCccccccccccee------cCcEEEEEechhHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999998754 367889999999875      35789999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCCCC
Q 015260          314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG  355 (410)
Q Consensus       314 G~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y~~  355 (410)
                      |+|++++++|+++|+...  +....++|||+||+|++|.|++
T Consensus       209 g~g~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~V~Y~~  248 (264)
T d1dj0a_         209 GAHNQPESWIAELLAAKD--RTLAAATAKAEGLYLVAVDYPD  248 (264)
T ss_dssp             HTTSSCTTHHHHHHHHCC--GGGSCCCCCSTTEEEEEEECCG
T ss_pred             HcCCCCHHHHHHHHhcCC--cccCccccCCCCCEEcccccCc
Confidence            999999999999999753  4456799999999999999964