Citrus Sinensis ID: 015269

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

MDRDSGSQPLLRRTSSSSRERKRSGSGRLSLSRRNSVNALRHEFVSKLPEKVLAGIDAEAPFDVDTSKTIALSEGEKEYYESQFATLKSFEEVDVLVDSDCFIEEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP

ccccccccccccccccccHHHccccccccccccccHHHHHHHHHHHccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccc

ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEccEEEEEEcccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccEccccccccc

mdrdsgsqpllrrtssssrerkrsgsgrlslsrrnSVNALRHEFVSKLPEKVLAgidaeapfdvdtsktialsEGEKEYYESQFATLKSFEEVdvlvdsdcfieEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNIniykypigklrvqpVGIIIFAAIMATLGFQVLIEAVEKLvkdeppkkmntVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSlvgqsappeILQKLTYLVIrhpevkridtvRAYTFGVLYFVEVdielpeelplkEAHAIGESLQNKIEKLPEVERAFVHLDyecdhkpehtvlnklpssqp

mdrdsgsqpllrrtssssrerkrsgsgrlslsrrnsvnaLRHEFVSKLPEKVLAGIdaeapfdvdTSKTIALSEGEKEYYESQFATLKSFEEVDVLVDSDCFIEEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEklvkdeppkkMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECdhkpehtvlnklpssqp

MDRDSGSQPllrrtssssrerkrsgsgrlslsrrnsvnalrHEFVSKLPEKVLAGIDAEAPFDVDTSKTIALSEGEKEYYESQFATLKSFEEVDVLVDSDCFIEEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDvvtnvvglvaavlgDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP

******************************************EFVSKLPEKVLAGIDAEAPFDVDTSKTIALSEGEKEYYESQFATLKSFEEVDVLVDSDCFIEEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDH***************

***********************************************************************************FATLKSFE**********************ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEH***********

******************************LSRRNSVNALRHEFVSKLPEKVLAGIDAEAPFDVDTSKTIALSEGEKEYYESQFATLKSFEEVDVLVDSDCFIEEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		410	2.2.26 [Sep-21-2011]
Q10PP8		397	Metal tolerance protein 4	yes	no	0.931	0.962	0.786	1e-178
Q6Z7K5		410	Metal tolerance protein 3	no	no	0.980	0.980	0.665	1e-157
Q9M2P2		411	Putative metal tolerance	yes	no	0.953	0.951	0.681	1e-155
Q5NA18		415	Metal tolerance protein 5	no	no	0.804	0.795	0.548	7e-99
Q9SAJ7		402	Metal tolerance protein 9	no	no	0.782	0.798	0.557	4e-97
Q0WU02		428	Metal tolerance protein 1	no	no	0.782	0.75	0.548	2e-95
Q9LDU0		391	Metal tolerance protein 7	no	no	0.782	0.820	0.547	1e-93
O80632		394	Metal tolerance protein 1	no	no	0.785	0.817	0.532	7e-82
Q0DHJ5		376	Metal tolerance protein 6	no	no	0.690	0.752	0.483	1e-73
C0SP78		297	Uncharacterized transport	yes	no	0.670	0.925	0.266	2e-15

>sp\|Q10PP8\|MTP4_ORYSJ Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1	Back alignment and function desciption

 Score =  623 bits (1607), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/384 (78%), Positives = 340/384 (88%), Gaps = 2/384 (0%)

Query: 29  LSLSRRNSVNALRHEFVSKLPEKVLAGIDAEAPFDVDTSKTIALSEGEKEYYESQFATLK 88
           L+  RRNSV ++R EFVS+LP+KVL  +D E P  VD S++  L EGEKEYYE QFATL+
Sbjct: 14  LAERRRNSVGSMRGEFVSRLPKKVLDAVDPERPSHVDFSRSKGLREGEKEYYEKQFATLR 73

Query: 89  SFEEVDVLVDSDCFIEED-LQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAAST 147
           SFEEVD + +S+   EED + EQ Q E AMKISNYAN++LLA KI+ATIKSGSIAIAAST
Sbjct: 74  SFEEVDSIEESNVMSEEDDIAEQKQSEFAMKISNYANMILLALKIYATIKSGSIAIAAST 133

Query: 148 LDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVE 207
           LDSLLDLMAGGILWFTH++MK+IN+YKYPIGKLRVQPVGIIIFAA+MATLGFQV ++AVE
Sbjct: 134 LDSLLDLMAGGILWFTHLSMKSINVYKYPIGKLRVQPVGIIIFAAVMATLGFQVFVQAVE 193

Query: 208 KLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNV 267
           KL+ +E P K+  VQL WLYSIMI ATVVKLALW+YC++SGNKIVRAYAKDHYFDVVTNV
Sbjct: 194 KLIVNETPDKLTPVQLTWLYSIMIFATVVKLALWLYCRTSGNKIVRAYAKDHYFDVVTNV 253

Query: 268 VGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLV 327
           VGL AAVLGD FYWWIDP GAI LAVYTITNWS TV ENAVSLVG+SAPPE+LQKLTYL 
Sbjct: 254 VGLAAAVLGDMFYWWIDPVGAIALAVYTITNWSGTVWENAVSLVGESAPPEMLQKLTYLA 313

Query: 328 IR-HPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 386
           IR HP++KR+DTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQ KIE+LPEVERAF
Sbjct: 314 IRHHPQIKRVDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQIKIEELPEVERAF 373

Query: 387 VHLDYECDHKPEHTVLNKLPSSQP 410
           VHLD+ECDHKPEH +L+KLPSSQP
Sbjct: 374 VHLDFECDHKPEHNILSKLPSSQP 397

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
Oryza sativa subsp. japonica (taxid: 39947)

>sp\|Q6Z7K5\|MTP3_ORYSJ Metal tolerance protein 3 OS=Oryza sativa subsp. japonica GN=MTP3 PE=2 SV=1	Back alignment and function description

>sp\|Q9M2P2\|MTPC3_ARATH Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2	Back alignment and function description

>sp\|Q5NA18\|MTP5_ORYSJ Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1	Back alignment and function description

>sp\|Q9SAJ7\|MTP9_ARATH Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2	Back alignment and function description

>sp\|Q0WU02\|MTP10_ARATH Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1	Back alignment and function description

>sp\|Q9LDU0\|MTP7_ORYSJ Metal tolerance protein 7 OS=Oryza sativa subsp. japonica GN=MTP7 PE=2 SV=1	Back alignment and function description

>sp\|O80632\|MTP11_ARATH Metal tolerance protein 11 OS=Arabidopsis thaliana GN=MTP11 PE=2 SV=1	Back alignment and function description

>sp\|Q0DHJ5\|MTP6_ORYSJ Metal tolerance protein 6 OS=Oryza sativa subsp. japonica GN=MTP6 PE=2 SV=2	Back alignment and function description

>sp\|C0SP78\|YDFM_BACSU Uncharacterized transporter YdfM OS=Bacillus subtilis (strain 168) GN=ydfM PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		410
363806652		409	uncharacterized protein LOC100785952 [Gl	0.997	1.0	0.758	0.0
28628302		415	cation diffusion facilitator 8 [Stylosan	0.997	0.985	0.736	1e-179
297242519		408	metal tolerance protein [Carica papaya]	0.975	0.980	0.746	1e-177
357460555		403	Metal tolerance protein [Medicago trunca	0.980	0.997	0.742	1e-177
115451677		441	Os03g0226400 [Oryza sativa Japonica Grou	0.973	0.904	0.759	1e-177
242036401		399	hypothetical protein SORBIDRAFT_01g04182	0.934	0.959	0.781	1e-176
122230824		397	RecName: Full=Metal tolerance protein 4;	0.931	0.962	0.786	1e-176
293332327		402	uncharacterized protein LOC100381541 [Ze	0.934	0.952	0.784	1e-176
255581676		405	cation efflux protein/ zinc transporter,	0.965	0.977	0.731	1e-176
225435642		416	PREDICTED: metal tolerance protein 4 [Vi	1.0	0.985	0.759	1e-174

>gi\|363806652\|ref\|NP_001242003.1\| uncharacterized protein LOC100785952 [Glycine max] gi\|255635321\|gb\|ACU18014.1\| unknown [Glycine max]	Back alignment and taxonomy information

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/410 (75%), Positives = 355/410 (86%), Gaps = 1/410 (0%)

Query: 1   MDRDSGSQPLLRRTSSSSRERKRSGSGRLSLSRRNSVNALRHEFVSKLPEKVLAGIDAEA 60
           M+ +SGS P     ++       +G  R  LSRR SV++LR  F SK P+KV +G+D+E+
Sbjct: 1   MEGNSGSDPARPLLANRDNNSAENGGQRSRLSRRISVSSLRASFTSKFPDKVRSGLDSES 60

Query: 61  PFDVDTSKTIALSEGEKEYYESQFATLKSFEEVDVLVDSDCFIEEDLQEQVQHERAMKIS 120
           PFDVD S T ALS+GEKEYYE QFATLKSF+EVD +  SDC IEE  +EQ Q ERAMKIS
Sbjct: 61  PFDVDLSSTTALSKGEKEYYERQFATLKSFDEVDSVESSDC-IEESDEEQAQQERAMKIS 119

Query: 121 NYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKL 180
           NYAN+ LL  KI+AT++SGSIAIAASTLDSLLDLMAGGILWFTH++MKNINIYKYPIGKL
Sbjct: 120 NYANVALLILKIYATVRSGSIAIAASTLDSLLDLMAGGILWFTHLSMKNINIYKYPIGKL 179

Query: 181 RVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLAL 240
           RVQPVGIIIFAAIMATLGFQVLI AV++L+++ P + M T QL WLYSIMI ATVVKL L
Sbjct: 180 RVQPVGIIIFAAIMATLGFQVLITAVQQLIQNSPAEMMTTEQLIWLYSIMIFATVVKLML 239

Query: 241 WIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWS 300
           W+YC+SSGNKIVRAYA DH+FDVVTN+VGLVAAVLGD +YWWIDP GAILLA+YTITNWS
Sbjct: 240 WLYCRSSGNKIVRAYADDHHFDVVTNMVGLVAAVLGDKYYWWIDPVGAILLAIYTITNWS 299

Query: 301 ETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEEL 360
            TVMENAVSLVGQSAPPE+LQKLTYLVIRHP +KR+DTVRA+TFGVLYFVEVDIELPE+L
Sbjct: 300 HTVMENAVSLVGQSAPPEVLQKLTYLVIRHPRIKRVDTVRAHTFGVLYFVEVDIELPEDL 359

Query: 361 PLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNKLPSSQP 410
           PLKEAHAIGESLQ K+EKLPEVERAFVHLD+ECDHKPEH+VL KLP++QP
Sbjct: 360 PLKEAHAIGESLQIKLEKLPEVERAFVHLDFECDHKPEHSVLIKLPNNQP 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|28628302\|gb\|AAO38707.1\| cation diffusion facilitator 8 [Stylosanthes hamata]	Back alignment and taxonomy information

>gi\|297242519\|gb\|ADI24923.1\| metal tolerance protein [Carica papaya]	Back alignment and taxonomy information

>gi\|357460555\|ref\|XP_003600559.1\| Metal tolerance protein [Medicago truncatula] gi\|355489607\|gb\|AES70810.1\| Metal tolerance protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|115451677\|ref\|NP_001049439.1\| Os03g0226400 [Oryza sativa Japonica Group] gi\|113547910\|dbj\|BAF11353.1\| Os03g0226400, partial [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|242036401\|ref\|XP_002465595.1\| hypothetical protein SORBIDRAFT_01g041820 [Sorghum bicolor] gi\|241919449\|gb\|EER92593.1\| hypothetical protein SORBIDRAFT_01g041820 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|122230824\|sp\|Q10PP8.1\|MTP4_ORYSJ RecName: Full=Metal tolerance protein 4; Short=OsMTP4 gi\|108706950\|gb\|ABF94745.1\| Metal tolerance protein C3, putative, expressed [Oryza sativa Japonica Group] gi\|215686904\|dbj\|BAG89754.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|215687275\|dbj\|BAG91840.1\| unnamed protein product [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|293332327\|ref\|NP_001167840.1\| uncharacterized protein LOC100381541 [Zea mays] gi\|223944355\|gb\|ACN26261.1\| unknown [Zea mays] gi\|414865710\|tpg\|DAA44267.1\| TPA: hypothetical protein ZEAMMB73_673370 [Zea mays]	Back alignment and taxonomy information

>gi\|255581676\|ref\|XP_002531641.1\| cation efflux protein/ zinc transporter, putative [Ricinus communis] gi\|223528726\|gb\|EEF30737.1\| cation efflux protein/ zinc transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225435642\|ref\|XP_002285662.1\| PREDICTED: metal tolerance protein 4 [Vitis vinifera] gi\|297746418\|emb\|CBI16474.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		410
TAIR\|locus:2095873		411	AT3G58060 [Arabidopsis thalian	0.887	0.885	0.694	9.8e-135
TAIR\|locus:2032830		428	AT1G16310 [Arabidopsis thalian	0.782	0.75	0.521	6e-87
TAIR\|locus:2039697		394	MTP11 [Arabidopsis thaliana (t	0.782	0.814	0.512	2.1e-84
DICTYBASE\|DDB_G0285541		434	DDB_G0285541 "putative cation	0.775	0.732	0.395	3.6e-57
WB\|WBGene00018948		446	F56C9.3 [Caenorhabditis elegan	0.290	0.266	0.475	1.1e-46
ASPGD\|ASPL0000076507		558	AN5049 [Emericella nidulans (t	0.682	0.501	0.351	1.5e-44
WB\|WBGene00019841		489	R02F11.3 [Caenorhabditis elega	0.692	0.580	0.335	5.7e-43
UNIPROTKB\|G4MRQ3		561	MGG_04623 "Cation efflux famil	0.743	0.543	0.330	4.6e-42
WB\|WBGene00019803		341	PDB1.1 [Caenorhabditis elegans	0.773	0.929	0.312	4.2e-40
WB\|WBGene00044481		352	ZK185.5 [Caenorhabditis elegan	0.765	0.892	0.321	1.1e-37

TAIR\|locus:2095873 AT3G58060 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
 Identities = 259/373 (69%), Positives = 300/373 (80%)

Query:    44 FVSKLPEKVLAGIDAEAPFDVDTSKTIALSEGEKEYYESQFATLKSFEEVD-VLVDSDCF 102
             F + LP+K+ + ID E P  +D SK   L E EKEYYE Q ATLKSFEEV+  L  SD +
Sbjct:    37 FFADLPQKLRSKIDPENPLHLDVSKAAGLKEDEKEYYERQLATLKSFEEVESFLARSDEY 96

Query:   103 I------EEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMA 156
                    EED  E+   E AM+ISN+ANI LLA KI+AT+KSGSIAIAASTLDSLLDLMA
Sbjct:    97 TIDEKEEEEDRAERAAQELAMQISNWANIFLLALKIYATVKSGSIAIAASTLDSLLDLMA 156

Query:   157 GGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPK 216
             GGILWFTH++MKN+NIYKYPIGKLRVQPVGIIIFAA+MATLGFQVL+ A E+L+ +EP +
Sbjct:   157 GGILWFTHLSMKNVNIYKYPIGKLRVQPVGIIIFAAVMATLGFQVLLVAAEQLISNEPSE 216

Query:   217 KMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXX 276
             KMN VQL WLYSIM+ AT +KL LWIYCKSS N IVRAYAKDH+FD              
Sbjct:   217 KMNHVQLIWLYSIMLSATAIKLVLWIYCKSSRNHIVRAYAKDHHFDVVTNVLGLVAAVLA 276

Query:   277 DSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRH--PEVK 334
             ++FYWW+DP GAILLA+YTI NWS TVMENAVSL+GQSAPPE+LQKLTYLV+R     +K
Sbjct:   277 NAFYWWLDPTGAILLAIYTIVNWSGTVMENAVSLIGQSAPPEVLQKLTYLVMRQGGDNIK 336

Query:   335 RIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECD 394
              +DTVRAYTFGVLYFVEVDIELPE+LPLKEAHAIGESLQ K+E+LPEVERAFVHLD+EC 
Sbjct:   337 HVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGESLQIKLEELPEVERAFVHLDFECH 396

Query:   395 HKPEHTVLNKLPS 407
             HKPEH+VL+ +P+
Sbjct:   397 HKPEHSVLSTIPN 409

GO:0005634 "nucleus" evidence=ISM

GO:0006812 "cation transport" evidence=IEA;ISS

GO:0008324 "cation transmembrane transporter activity" evidence=IEA;ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR\|locus:2032830 AT1G16310 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039697 MTP11 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0285541 DDB_G0285541 "putative cation efflux pump" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

WB\|WBGene00018948 F56C9.3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000076507 AN5049 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

WB\|WBGene00019841 R02F11.3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MRQ3 MGG_04623 "Cation efflux family protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

WB\|WBGene00019803 PDB1.1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

WB\|WBGene00044481 ZK185.5 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10PP8	MTP4_ORYSJ	No assigned EC number	0.7864	0.9317	0.9622	yes	no
Q9M2P2	MTPC3_ARATH	No assigned EC number	0.6813	0.9536	0.9513	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		410
COG0053		304	COG0053, MMT1, Predicted Co/Zn/Cd cation transport	8e-47
pfam01545		273	pfam01545, Cation_efflux, Cation efflux family	9e-44
TIGR01297		268	TIGR01297, CDF, cation diffusion facilitator famil	1e-31
PRK09509		299	PRK09509, fieF, ferrous iron efflux protein F; Rev	6e-09
COG1230		296	COG1230, CzcD, Co/Zn/Cd efflux system component [I	4e-08
COG3965		314	COG3965, COG3965, Predicted Co/Zn/Cd cation transp	8e-05

>gnl\|CDD\|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

 Score =  162 bits (412), Expect = 8e-47
 Identities = 75/283 (26%), Positives = 148/283 (52%), Gaps = 12/283 (4%)

Query: 114 ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFT-HVAMKNINI 172
            RA  IS   N+ L   K+ A I +GS+A+ A  + SL D++A  I+     ++ K  + 
Sbjct: 12  RRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPD- 70

Query: 173 YKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIG 232
             +P G  + + +  +I + ++   GF++L+EA+++L+  +P +            + + 
Sbjct: 71  RDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLA-----LGVALI 125

Query: 233 ATVVKLALWIY----CKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGA 288
           + V+K AL+ Y     K + ++ + A A  H  DV+T++  LV  +     + W+DP  A
Sbjct: 126 SIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSLLGWPWLDPLAA 185

Query: 289 ILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLY 348
           +L+++Y +        E+   L+  +  PE L+K+  +++  P VK +  +R    G   
Sbjct: 186 LLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRTRKSGSRI 245

Query: 349 FVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLD 390
           F++V IE+  +L L+EAH I + ++ +I+K  P+V    +H++
Sbjct: 246 FIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVE 288

Length = 304

>gnl\|CDD\|216561 pfam01545, Cation_efflux, Cation efflux family	Back alignment and domain information

>gnl\|CDD\|233348 TIGR01297, CDF, cation diffusion facilitator family transporter	Back alignment and domain information

>gnl\|CDD\|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed	Back alignment and domain information

>gnl\|CDD\|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		410
KOG1485		412	consensus Mitochondrial Fe2+ transporter MMT1 and	100.0
COG0053		304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	100.0
PRK09509		299	fieF ferrous iron efflux protein F; Reviewed	100.0
PRK03557		312	zinc transporter ZitB; Provisional	100.0
TIGR01297		268	CDF cation diffusion facilitator family transporte	100.0
COG1230		296	CzcD Co/Zn/Cd efflux system component [Inorganic i	100.0
PF01545		284	Cation_efflux: Cation efflux family; InterPro: IPR	100.0
KOG1484		354	consensus Putative Zn2+ transporter MSC2 (cation d	99.95
KOG1482		379	consensus Zn2+ transporter [Inorganic ion transpor	99.95
COG3965		314	Predicted Co/Zn/Cd cation transporters [Inorganic	99.95
KOG1483		404	consensus Zn2+ transporter ZNT1 and related Cd2+/Z	99.94
KOG2802		503	consensus Membrane protein HUEL (cation efflux sup	99.75
COG0053		304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	98.23
TIGR01297		268	CDF cation diffusion facilitator family transporte	98.1
PRK09509		299	fieF ferrous iron efflux protein F; Reviewed	98.05
PRK03557		312	zinc transporter ZitB; Provisional	97.31
KOG1485		412	consensus Mitochondrial Fe2+ transporter MMT1 and	96.12
PF01545		284	Cation_efflux: Cation efflux family; InterPro: IPR	93.51
PF00873		1021	ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010	90.01
COG1230		296	CzcD Co/Zn/Cd efflux system component [Inorganic i	89.87
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	85.35
COG4858		226	Uncharacterized membrane-bound protein conserved i	85.06
PF03780		108	Asp23: Asp23 family; InterPro: IPR005531 This entr	83.49
PF07444		84	Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR01	82.42

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3.7e-63  Score=485.91  Aligned_cols=328  Identities=47%  Similarity=0.666  Sum_probs=298.3

Q ss_pred             hhHHHHHHHHHHHhhHHhhhhhccccCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHH
Q 015269           75 GEKEYYESQFATLKSFEEVDVLVDSDCFI-----EEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLD  149 (410)
Q Consensus        75 ~~~~fy~~q~~~i~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdald  149 (410)
                      ++.+||.+|.++++.|.++.........+     ++.+.+.+.++++.|+++++|++++++|+++|+.+||+|++||++|
T Consensus        70 ~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavd  149 (412)
T KOG1485|consen   70 NVSEFYSSQKSLLQKFVEHSHTHEHGFVSEALELEKLQILKNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVD  149 (412)
T ss_pred             ccchHHHHHHHHhcccccccccccCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            34589999999999999888776653221     1112233456899999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CccchhHH----
Q 015269          150 SLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPK-KMNTVQLE----  224 (410)
Q Consensus       150 sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~~~~~il~esi~~Li~~~~~~-~~~~~~~~----  224 (410)
                      |+.|+++++++|++.+.+++++.++||+|++|+||+|.+.++++|.++|++++.+|+..+..|.... .++.+...    
T Consensus       150 Sl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a  229 (412)
T KOG1485|consen  150 SLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINA  229 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhcccccccccCchhhcccch
Confidence            9999999999999999999999999999999999999999999999999999999999998832221 12222322    


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhCC-hhhHHhHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 015269          225 -WLYSIMIGATVVKLALWIYCKSSGN-KIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSET  302 (410)
Q Consensus       225 -~~i~i~~~a~vv~~~l~~~~r~~~s-~~l~a~a~d~~~Dv~~n~~~lv~~~l~~~~~~~~Dpi~ailIa~~ii~~~~~~  302 (410)
                       |.++++++...+++.++++|+..++ ..++|.|+|||+|+++|.++++|+.++.+++||+||+||++++.|+++.|+++
T Consensus       230 ~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~~~lDP~gailVS~~ii~t~~~t  309 (412)
T KOG1485|consen  230 LWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYNYWLDPIGAILVSTYIIYTGGRT  309 (412)
T ss_pred             hhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccchhhhhhheehhhhhhHH
Confidence             7888999999999999999998876 88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCChHHHHHHHHHHHcC-CCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCC
Q 015269          303 VMENAVSLVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPE  381 (410)
Q Consensus       303 ~~e~~~~L~g~s~~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~  381 (410)
                      ..+++.+|+|+++|||.++++++.+.++ +.++.++++++|++|..++||+||++|++++++++|+|++.+|++||.+|+
T Consensus       310 ~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~e  389 (412)
T KOG1485|consen  310 GLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPE  389 (412)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhhcch
Confidence            9999999999999999999999999999 799999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeecCCCCCccccc
Q 015269          382 VERAFVHLDYECDHKPEHTVL  402 (410)
Q Consensus       382 v~~v~Vhvd~~~~~~p~h~~~  402 (410)
                      |+|+|||+||+++|+|+|...
T Consensus       390 ver~fvh~d~e~~hr~~~~~~  410 (412)
T KOG1485|consen  390 VERAFVHIDYEFLHRPHHEHL  410 (412)
T ss_pred             heeeeeecCccccCCchHhhc
Confidence            999999999999999999754

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09509 fieF ferrous iron efflux protein F; Reviewed	Back alignment and domain information

>PRK03557 zinc transporter ZitB; Provisional	Back alignment and domain information

>TIGR01297 CDF cation diffusion facilitator family transporter	Back alignment and domain information

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt	Back alignment and domain information

>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]	Back alignment and domain information

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01297 CDF cation diffusion facilitator family transporter	Back alignment and domain information

>PRK09509 fieF ferrous iron efflux protein F; Reviewed	Back alignment and domain information

>PRK03557 zinc transporter ZitB; Provisional	Back alignment and domain information

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt	Back alignment and domain information

>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []	Back alignment and domain information

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family	Back alignment and domain information

>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		410
2qfi_A		300	Structure Of The Zinc Transporter Yiip Length = 300		4e-07
3h90_A		283	Structural Basis For The Autoregulation Of The Zinc		6e-07
3j1z_P		306	Inward-facing Conformation Of The Zinc Transporter		1e-06

>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip Length = 300

Back alignment and structure

Iteration: 1

Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/284 (19%), Positives = 119/284 (41%), Gaps = 24/284 (8%) Query: 126 VLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPI-------- 177 +LL KIFA +GS++I A+ +DSL+D+ A ++ N+ + +Y + Sbjct: 22 LLLLIKIFAWWYTGSVSILAALVDSLVDIGA---------SLTNLLVVRYSLQPADDNHS 72 Query: 178 -GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVV 236 G + + + + + ++ + + ++ L+ P + + +++ +V Sbjct: 73 FGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILV 132 Query: 237 KLALWIYCKSSGNKIVRAYAKDHYFDXXXXXXXXXXXXXXDSFYWW--IDPAGAILLAVY 294 W+ + + ++ VRA + D S+Y W D A+ + +Y Sbjct: 133 SFQRWV-VRRTQSQAVRADMLHYQSDVMMNGAILLALGL--SWYGWHRADALFALGIGIY 189 Query: 295 TITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDI 354 + + E SL+ ++ P E Q++ +V P V +R G F+++ + Sbjct: 190 ILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHL 249 Query: 355 ELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPE 398 E+ + LPL +AH + + ++ I + +H D C P Sbjct: 250 EMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD-PCSVVPR 292

PyMOL of 2qfi

>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc Transporter Yiip Length = 283

Back alignment and structure

>pdb|3J1Z|P Chain P, Inward-facing Conformation Of The Zinc Transporter Yiip Revealed By Cryo-electron Microscopy Length = 306

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		410
3h90_A		283	Ferrous-iron efflux pump FIEF; membrane protein, z	3e-44
2zzt_A		107	Putative uncharacterized protein; cation diffusion	5e-15
3byp_A		94	CZRB protein; membrane protein, zinc transporter,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283	Back alignment and structure

 Score =  154 bits (392), Expect = 3e-44
 Identities = 57/281 (20%), Positives = 118/281 (41%), Gaps = 11/281 (3%)

Query: 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGI-LWFTHVAMKNINIY 173
           RA   +     +LL  KIFA   +GS++I A+ +DSL+D+ A    L     +++  +  
Sbjct: 4   RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPAD-D 62

Query: 174 KYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGA 233
            +  G  + + +  +  +  ++     + +  ++ L+   P              + I A
Sbjct: 63  NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMT-----DPGVGVIVTIVA 117

Query: 234 TVVKLALWIYCKSSGNKI----VRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAI 289
            +  + L  + +    +     VRA    +  DV+ N   L+A  L    +   D   A+
Sbjct: 118 LICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 177

Query: 290 LLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYF 349
            + +Y + +      E   SL+ ++ P E  Q++  +V   P V     +R    G   F
Sbjct: 178 GIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRF 237

Query: 350 VEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 390
           +++ +E+ + LPL +AH + + ++  I +        +H D
Sbjct: 238 IQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278

PyMOL of 3h90

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Length = 107	Back alignment and structure

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Length = 94	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		410
3j1z_P		306	YIIP, cation efflux family protein; zinc transport	100.0
3h90_A		283	Ferrous-iron efflux pump FIEF; membrane protein, z	100.0
3byp_A		94	CZRB protein; membrane protein, zinc transporter,	99.53
2zzt_A		107	Putative uncharacterized protein; cation diffusion	99.46
3h90_A		283	Ferrous-iron efflux pump FIEF; membrane protein, z	97.27
3j1z_P		306	YIIP, cation efflux family protein; zinc transport	97.25
3cq1_A		103	Putative uncharacterized protein TTHB138; DTDP-4-k	82.5

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}	Back alignment and structure

Probab=100.00  E-value=1.9e-53  Score=416.54  Aligned_cols=277  Identities=22%  Similarity=0.266  Sum_probs=256.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHH
Q 015269          112 QHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFA  191 (410)
Q Consensus       112 ~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~s  191 (410)
                      .-|++.++++++|++++++|+++|+.|||+||+||++||+.|+++.++++++.+.++||++.+|||||+|+|++++++.|
T Consensus        10 ~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~   89 (306)
T 3j1z_P           10 WVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQS   89 (306)
T ss_dssp             CSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh----CChhhHHhHHHHHhhHHHHH
Q 015269          192 AIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS----GNKIVRAYAKDHYFDVVTNV  267 (410)
Q Consensus       192 v~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~~----~s~~l~a~a~d~~~Dv~~n~  267 (410)
                      ++|+++++++++|+++++++|++.+     ...++++++++++++++++++++++.    +|..++|.++|+++|+++|+
T Consensus        90 ~~l~~~~~~i~~eai~~l~~p~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~  164 (306)
T 3j1z_P           90 AFIMGSAFLLLFYGGERLLNPSPVE-----NATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNA  164 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTCCGG-----GTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHHhhhheecCCCcc-----ccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhh
Confidence            9999999999999999999988653     23345677888899999988888653    47889999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecCe
Q 015269          268 VGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVL  347 (410)
Q Consensus       268 ~~lv~~~l~~~~~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~  347 (410)
                      +++++.++..+.|||+||++++++++++++.|+++++|+...|+|+++|++..++|++.+.++|+|.+||++|+|+.|++
T Consensus       165 ~vli~~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~G~~  244 (306)
T 3j1z_P          165 AVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKT  244 (306)
T ss_dssp             TCCCTTSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEETTE
T ss_pred             HHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEECCc
Confidence            87776655555689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecC
Q 015269          348 YFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC  393 (410)
Q Consensus       348 ~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~  393 (410)
                      +++++||++|+++|++|+|+|++++|++|++.+++.+++||+||..
T Consensus       245 ~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~  290 (306)
T 3j1z_P          245 VFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQ  290 (306)
T ss_dssp             EEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETT
T ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence            9999999999999999999999999999987667889999999953

PyMOL of 3j1z

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A	Back alignment and structure

>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A	Back alignment and structure

>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}	Back alignment and structure

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A	Back alignment and structure

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}	Back alignment and structure

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		410
d2qfia2		204	f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {	3e-26
d2qfia1		82	d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF	1e-21
d3bypa1		82	d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {	1e-17

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (256), Expect = 3e-26
 Identities = 37/199 (18%), Positives = 78/199 (39%), Gaps = 1/199 (0%)

Query: 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYK 174
           RA   +     +LL  KIFA   +GS++I A+ +DSL+D+ A                  
Sbjct: 7   RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDN 66

Query: 175 YPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGAT 234
           +  G  + + +  +  +  ++     + +  ++ L+   P      V +      +I   
Sbjct: 67  HSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPM-TDPGVGVIVTIVALICTI 125

Query: 235 VVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVY 294
           ++        + + ++ VRA    +  DV+ N   L+A  L    +   D   A+ + +Y
Sbjct: 126 ILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIY 185

Query: 295 TITNWSETVMENAVSLVGQ 313
            + +      E   SL+ +
Sbjct: 186 ILYSALRMGYEAVQSLLDR 204

PyMOL of d2qfia2

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Length = 82	Back information, alignment and structure

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Length = 82	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		410
d2qfia2		204	Ferrous-iron efflux pump FieF {Escherichia coli [T	99.95
d3bypa1		82	Putative Zinc transporter CzrB {Thermus thermophil	99.6
d2qfia1		82	Ferrous-iron efflux pump FieF (YiiP) {Escherichia	99.51
d2qfia2		204	Ferrous-iron efflux pump FieF {Escherichia coli [T	89.14
d1dqaa1		117	NAD-binding domain of HMG-CoA reductase {Human (Ho	88.33
d1uwda_		102	Hypothetical protein TM0487 {Thermotoga maritima [	85.32
d2cu6a1		91	Hypothetical protein TTHB138 {Thermus thermophilus	84.57

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.2e-35  Score=272.03  Aligned_cols=197  Identities=19%  Similarity=0.145  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHH
Q 015269          112 QHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFA  191 (410)
Q Consensus       112 ~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~s  191 (410)
                      ..+|++++++++|++++++|+++|+.+||+|++||++|++.|+++.++++++.+.++|+++++|||||+|+|++++++.|
T Consensus         4 ~~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~   83 (204)
T d2qfia2           4 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQS   83 (204)
T ss_dssp             SSSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccCCcchhHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHH----HHhCChhhHHhHHHHHhhHHHHH
Q 015269          192 AIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYC----KSSGNKIVRAYAKDHYFDVVTNV  267 (410)
Q Consensus       192 v~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~----r~~~s~~l~a~a~d~~~Dv~~n~  267 (410)
                      ++++++++++++|+++++++|++.+.     ..+++.+++++++++..++.++    ++.+|++++++++|+++|+++|+
T Consensus        84 ~~l~~~~~~~~~~si~~l~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~s~~~~a~~~~~~~D~~~s~  158 (204)
T d2qfia2          84 MFISGSALFLFLTGIQHLISPTPMTD-----PGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNG  158 (204)
T ss_dssp             TTTSSSTTGGGSSCTTSSTTTSSSST-----TTSCCCCCGGGSSCGGGGTTTHHHHGGGCCSTTSGGGGGGHHHHTCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccc-----cHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999876632     2233445556666666655554    44568889999999999999998


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015269          268 VGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQ  313 (410)
Q Consensus       268 ~~lv~~~l~~~~~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~  313 (410)
                      +++++.++....|||+||++++++++++++.|+++++|+...|+|+
T Consensus       159 ~vii~~~~~~~~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Lld~  204 (204)
T d2qfia2         159 AILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDR  204 (204)
T ss_dssp             TTCCCTTSSCSSTTSSSSSSHHHHTTTTTTTTTTHHHHTGGGSSCC
T ss_pred             HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            7777655554558999999999999999999999999999999985

PyMOL of d2qfia2

>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure