Citrus Sinensis ID: 015299

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGNFTASAMIEDIEANHHVELQKSEANNKLPLVALSMLHVPAADTNEVHQQP
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHEEcccccccccHHHHHHHHccccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHEEEccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
meklrccsnfletskPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFflerkaqpkiTFKVFMQIFVLALLgpvidqnfyyaglkftsptfscamsnmlpAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGpivelfwtqhahphdksdattstassekdwFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEhkpsvwqiGWDMNLLAAAYAGIVTSSISYFVQGLVikkrgpvfatafSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMeefgvdeipdpvkgnqvngnftASAMIEDIEANHHVElqkseannklPLVALSMlhvpaadtnevhqqp
Flexible Loop (DISEMBL)
MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFgvdeipdpvkgnqVNGNFTASAMIEDIEANHHVELQKSEANNKLPLVALSMLHVPAADTNEVHQQP
Low Complexity Region (SEG)
MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQakvvgtavtvagaMIMTLYKGPIVELFWTQHAHPHDKSDattstassEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGNFTASAMIEDIEANHHVELQKSEANNKLPLVALSMLHVPAADTNEVHQQP
Disordered region (IsUnstruct)
****RCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHA*****************DWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDE***********GNFTASAMIEDI*****************PLVALSML**************
Disordered Region (DISOPRED)
************TSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWT********************DWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLW****************************************************************************
Disordered Region (DISEMBL)
MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHA***************EKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGNFTASAMIEDIEANHHVELQKSEANNKLPLVALSMLHVPAADTNEVHQQP
Disordered Region (DISPRO)
***LRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWT********************DWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKH*************************************************KLPLVALSMLHVPA**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGNFTASAMIEDIEANHHVELQKSEANNKLPLVALSMLHVPAADTNEVHQQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q9FL41	402	WAT1-related protein At5g	yes	no	0.965	0.982	0.657	1e-156
F4IJ08	394	WAT1-related protein At2g	no	no	0.887	0.921	0.52	1e-113
Q9LXX8	377	WAT1-related protein At3g	no	no	0.772	0.838	0.581	1e-108
F4HZQ7	389	WAT1-related protein At1g	no	no	0.806	0.848	0.517	2e-98
Q501F8	373	WAT1-related protein At4g	no	no	0.889	0.975	0.472	1e-97
O80638	374	WAT1-related protein At2g	no	no	0.882	0.965	0.485	1e-95
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.797	0.857	0.513	4e-95
Q9LPF1	370	WAT1-related protein At1g	no	no	0.841	0.929	0.466	5e-93
Q9SUF1	384	WAT1-related protein At4g	no	no	0.882	0.940	0.422	3e-89
Q9FNA5	377	WAT1-related protein At5g	no	no	0.794	0.862	0.452	3e-82

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  550 bits (1417), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/414 (65%), Positives = 340/414 (82%), Gaps = 19/414 (4%)

Query: 1   MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIA 60
           ME++  C +FL +SKPYFAMISLQFGYAGMNIITK+SLN GMSHYVLVVYRHA ATAVIA
Sbjct: 3   MEEISSCESFLTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIA 62

Query: 61  PFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMT 120
           PFAFF ERKAQPKITF +FMQ+F+L LLGPVIDQNFYY GLK+TSPTFSCAMSNMLPAMT
Sbjct: 63  PFAFFFERKAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMT 122

Query: 121 FVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDA 180
           F++AV+ RME +++KK+ CQAK+ GT VTVAGAM+MT+YKGPIVELFWT++ H  D S A
Sbjct: 123 FILAVLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHA 182

Query: 181 ---TTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQ 237
              ++  +SS+K++  GSI LI ATLAWASLFVLQ K L+TY  HQLSLT+L+CF+GTLQ
Sbjct: 183 NTTSSKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQ 242

Query: 238 AIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLM 297
           A+AVTFV+EH PS W+IGWDMNLLAAAY+GIV SSISY+VQG+V+KKRGPVFATAFSPLM
Sbjct: 243 AVAVTFVMEHNPSAWRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLM 302

Query: 298 MIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQV 357
           M+IVA+MGSF+LAE I+LG V+GA+LIV+GLY+VLWGK KE   +  + E+       ++
Sbjct: 303 MVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKE--NQVTICELA------KI 354

Query: 358 NGNFTASAMIEDIEANHHVELQKSEANNKLPLVALSMLHVPAADTN--EVHQQP 409
           + N   S + ED+EAN   +++ SE +N   +++  ++ VP ++T+  +  Q+P
Sbjct: 355 DSN---SKVTEDVEANGS-KMKISEGDNS--MLSTIVISVPLSETHLKKTIQEP 402

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/375 (52%), Positives = 276/375 (73%), Gaps = 12/375 (3%)

Query: 12  ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ 71
           E++KPYFAM+ LQFGYAGMN++TK  L+RGMSHYVLV YR+AFATA IAPFA   ERK +
Sbjct: 7   ESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query: 72  PKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEK 131
            K+TF +FM+IF+LALLGPVIDQN YY GLK TSPTFS A+SN++PA+T ++A + RMEK
Sbjct: 67  SKMTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEK 126

Query: 132 INMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDW 191
           + M+KVRC  KV+GT VTV G+++M  YKGP +  F         +S  T +++    D+
Sbjct: 127 VEMRKVRCLVKVMGTLVTVVGSILMIFYKGPFINFF---------RSHLTAASSPPTADY 177

Query: 192 FLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV 251
              ++FL++A+L+WAS FVLQ   L+ Y  H LS+++++CF+GTLQ++A+ FV+EH PS 
Sbjct: 178 LKAAVFLLLASLSWASFFVLQAATLKKYSAH-LSMSTMVCFMGTLQSLALAFVMEHNPSA 236

Query: 252 WQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAE 311
             IG+DMNLLA+AYAGI++SSI+Y+VQGL+++++GPVF TAF+PL+++IV+IM  F+L +
Sbjct: 237 LNIGFDMNLLASAYAGIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQ 296

Query: 312 NIYLGSVLGAILIVVGLYSVLWGKH-KEKMEEFGVDEIPDPVKGNQVNGNFTASAMIEDI 370
            IYLG V+G ++++VG+Y+VLWGKH  +  EE   ++    VK    N   T    I++ 
Sbjct: 297 GIYLGGVIGVVVLMVGVYAVLWGKHVDDDGEETRHEDNVVAVKCCSGNNGLTIMPKIDEA 356

Query: 371 EANHHVELQKSEANN 385
           +    VE  K+ +  
Sbjct: 357 D-EEDVETGKATSEK 370

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX8|WTR27_ARATH WAT1-related protein At3g56620 OS=Arabidopsis thaliana GN=At3g56620 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/325 (58%), Positives = 255/325 (78%), Gaps = 9/325 (2%)

Query: 12  ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ 71
           E++KPYFAM+ LQFGYAGMN++TKV L+RGMSHYVLV YR+AFATA IAPFA   ERK +
Sbjct: 7   ESAKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query: 72  PKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEK 131
           PK+TF +FMQIFVLALLGP+IDQN YYAGLK TSPTF+ A++N++PA+TF++++ICRMEK
Sbjct: 67  PKMTFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEK 126

Query: 132 INMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDW 191
           + M+KVR QAKVVGT V V GAM+M L+K P++  F   H   H  S A        +D+
Sbjct: 127 VEMRKVRFQAKVVGTLVIVVGAMLMILFKIPLIT-FLRSHLTGHALSPA-------GEDY 178

Query: 192 FLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV 251
              ++FL+IA+ +WAS FVLQ   L+ Y +H LSL++++CF+GTLQ+ A+TFV+E   S 
Sbjct: 179 LKATVFLLIASFSWASFFVLQAATLKRYSSH-LSLSTMVCFMGTLQSTALTFVMEPNLSA 237

Query: 252 WQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAE 311
           W IG+DMNLLA+AYAGI++SSI+Y+VQG++ K++  +F TAF+PL++II +I+G  IL +
Sbjct: 238 WNIGFDMNLLASAYAGIMSSSIAYYVQGMMTKQKSVIFVTAFNPLVVIIGSIIGFLILNQ 297

Query: 312 NIYLGSVLGAILIVVGLYSVLWGKH 336
            + LG VLG  ++VVG+ +VLWGK 
Sbjct: 298 TLNLGGVLGMAILVVGVCTVLWGKE 322

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  359 bits (922), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/336 (51%), Positives = 242/336 (72%), Gaps = 6/336 (1%)

Query: 9   NFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLER 68
             + + KPY AMIS+QFGYAGM IIT VSL  GM+HYVL VYRHA ATAVIAPFA F ER
Sbjct: 4   GLMNSLKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHER 63

Query: 69  KAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICR 128
           K +PK+TF++F+QI +L  + PV+DQN YY G+ +TS TF+ A +N+LPA+TFV+A+I R
Sbjct: 64  KIRPKMTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFR 123

Query: 129 MEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELF-----WTQHAHPHDKSDATTS 183
           +E +N KKVR  AKVVGT +TV+GA++MTLYKGPIV+           +     S     
Sbjct: 124 LESVNFKKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAG 183

Query: 184 TASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTF 243
            A+ +K W  G++ L+  T  WA  F+LQ+  L+ Y   +LSLT+L+C +GTL+  AV+ 
Sbjct: 184 AAAMDKHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPA-ELSLTTLICLMGTLEGTAVSL 242

Query: 244 VIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAI 303
           V     S W+IG+D NL AAAY+G++ S ++Y+VQG+V+++RGPVF   F+PL ++I A 
Sbjct: 243 VTVRDLSAWKIGFDSNLFAAAYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAA 302

Query: 304 MGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEK 339
           +G  +L+E+I+LGSV+G + I+VGLY+V+WGK K+K
Sbjct: 303 LGVVVLSESIHLGSVIGTLFIIVGLYTVVWGKGKDK 338

Arabidopsis thaliana (taxid: 3702)

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  357 bits (915), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 175/370 (47%), Positives = 250/370 (67%), Gaps = 6/370 (1%)

Query: 11  LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKA 70
           ++  KP  A+ISLQFGYAGM IIT VS   GM+H++L  YRH  AT VIAPFA  LERK 
Sbjct: 6   MDKLKPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKI 65

Query: 71  QPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRME 130
           +PK+T+ +F++I  L  L P++DQN YY G+K TS T+S A  N LPA+TF+MAVI R+E
Sbjct: 66  RPKMTWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIE 125

Query: 131 KINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKD 190
            +N+KK R  AKV+GTA+TV GAM+MTLYKGP +ELF T H+  H  S   TS+ +++++
Sbjct: 126 TVNLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSG-TSSETTDQN 184

Query: 191 WFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPS 250
           W  G++ ++ +   WA  F+LQ+  L+ Y   +LSL   +C +GT+     + ++    S
Sbjct: 185 WVTGTLAVMGSITTWAGFFILQSFTLKKYP-AELSLVMWICAMGTVLNTIASLIMVRDVS 243

Query: 251 VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILA 310
            W++G D   LAA Y+G+V S ++Y++Q +VI++RGPVF T+FSP+ MII A +G  +LA
Sbjct: 244 AWKVGMDSGTLAAVYSGVVCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLA 303

Query: 311 ENIYLGSVLGAILIVVGLYSVLWGKHKEKM----EEFGVDEIPDPVKGNQVNGNFTASAM 366
           E I+LGS++GAI IV GLYSV+WGK K+++    E+ G+ E+P      +V G    S +
Sbjct: 304 EKIHLGSIIGAIFIVFGLYSVVWGKAKDEVISVEEKIGMQELPITNTSTKVEGGGITSEV 363

Query: 367 IEDIEANHHV 376
            E +  N  V
Sbjct: 364 NEGVTNNTQV 373

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  350 bits (898), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 183/377 (48%), Positives = 252/377 (66%), Gaps = 16/377 (4%)

Query: 11  LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKA 70
           L+T KP+  ++SLQFGYAG++II K +LN+GMS +VL  YRH  AT  IAPFA+FL+RK 
Sbjct: 3   LKTWKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKI 62

Query: 71  QPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRME 130
           +PK+T  +F +I +L LL P IDQN YY G+K+TS TF+ AM+N+LPA  F+MA I R+E
Sbjct: 63  RPKMTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLE 122

Query: 131 KINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKD 190
           K+N+KK+  QAK++GT VTV GAM+MT+ KGP++ L W   A+PHD    +++T   ++D
Sbjct: 123 KVNVKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPW---ANPHDIHQDSSNTG-VKQD 178

Query: 191 WFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEH-KP 249
              G+  + I  + WA    LQ   L++Y   +LSLT+ +CF+G++++  V   IE   P
Sbjct: 179 LTKGASLIAIGCICWAGFINLQAITLKSYP-VELSLTAYICFLGSIESTIVALFIERGNP 237

Query: 250 SVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFIL 309
           S W I  D  LLAA Y G++ S I Y+VQG+++K RGPVF TAF+PL M+IVAI+GS IL
Sbjct: 238 SAWAIHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIIL 297

Query: 310 AENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVD---EIP-------DPVKGNQVNG 359
           AE ++LG +LGAI+IV+GLYSVLWGK K++      D   E+P        P K N    
Sbjct: 298 AEVMFLGRILGAIVIVLGLYSVLWGKSKDEPSSSFSDMDKELPLSTPQIVLPSKANAKMD 357

Query: 360 NFTASAMIEDIEANHHV 376
              AS +I     N  V
Sbjct: 358 TNDASVVISRPNTNESV 374

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  348 bits (893), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/337 (51%), Positives = 238/337 (70%), Gaps = 11/337 (3%)

Query: 3   KLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPF 62
           K R C   +E ++P+ +M+ LQ G AGM+I++K  LN+GMS+YVLVVYRHA AT V+APF
Sbjct: 5   KKRDC---MEKARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPF 61

Query: 63  AFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFV 122
           AF+ ++K +PK+T  +F +I +L LL PVIDQN YY G+K+T+ TF+ AM N+LPA+TFV
Sbjct: 62  AFYFDKKVRPKMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFV 121

Query: 123 MAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATT 182
           +A I  +E++ ++ +R   KVVGT  TV GAMIMTL KGP+++LFWT+    H+   A T
Sbjct: 122 LAYIFGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNT--AGT 179

Query: 183 STASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVT 242
              S+ K    G++ + I   ++A   +LQ   L TY   +LSLT+ +C +GT++  AV 
Sbjct: 180 DIHSAIK----GAVLVTIGCFSYACFMILQAITLRTYP-AELSLTAWICLMGTIEGTAVA 234

Query: 243 FVIEH-KPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIV 301
            V+E   PS W IGWD  LL A Y+GIV S+++Y+V G+V+K RGPVF TAFSPL MIIV
Sbjct: 235 LVMEKGNPSAWAIGWDTKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIV 294

Query: 302 AIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKE 338
           AIM + I AE +YLG VLGA++I  GLY V+WGK K+
Sbjct: 295 AIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKD 331

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  341 bits (875), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 168/360 (46%), Positives = 238/360 (66%), Gaps = 16/360 (4%)

Query: 11  LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKA 70
           +E  KP  A+ISLQFGYAGM IIT VS   GM H+VL  YRH  AT V+APFA   ERK 
Sbjct: 6   MEKIKPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKI 65

Query: 71  QPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRME 130
           +PK+T  +F ++  L +L P++DQN YY GLK TS +++ A +N LPA+TF++A+I R+E
Sbjct: 66  RPKMTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLE 125

Query: 131 KINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKD 190
            +N +KV   AKVVGT +TV GAMIMTLYKGP +E+    H   H  S +T     + + 
Sbjct: 126 TVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSST----PTGQH 181

Query: 191 WFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPS 250
           W LG+I ++ +   WA+ F+LQ+  L+ Y   +LSL +L+C +GT+     + ++   PS
Sbjct: 182 WVLGTIAIMGSISTWAAFFILQSYTLKVYPA-ELSLVTLICGIGTILNAIASLIMVRDPS 240

Query: 251 VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILA 310
            W+IG D   LAA Y+G+V S I+Y++Q +VIK+RGPVF T+FSP+ MII A +G+ +LA
Sbjct: 241 AWKIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVLA 300

Query: 311 ENIYLGSVLGAILIVVGLYSVLWGKHKE-----------KMEEFGVDEIPDPVKGNQVNG 359
           E I+LGS++GA+ IV+GLYSV+WGK K+           K +E  +  +     G+ V+G
Sbjct: 301 EKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLDEKIVAKSQELPITNVVKQTNGHDVSG 360

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  329 bits (843), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 160/379 (42%), Positives = 243/379 (64%), Gaps = 18/379 (4%)

Query: 15  KPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKI 74
           +PY  MI LQFG AG  I+   +LN+G + YV++VYR+  A  V+APFA   ERK +PK+
Sbjct: 12  RPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRPKM 71

Query: 75  TFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINM 134
           T  V  +I  L  L PV+DQ F Y G+  TS T++ A+ N+LP++TF++A I RMEK+N+
Sbjct: 72  TLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNI 131

Query: 135 KKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPH-DKSDATTSTASSEKDWFL 193
            +VR +AK++GT V + GA++MTLYKGP++ L W+   +P+ D+ +  T+ +    +W +
Sbjct: 132 AEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWS---NPNMDQQNGHTNNSQDHNNWVV 188

Query: 194 GSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQ 253
           G++ +++  +AW+  +VLQ+  ++TY    LSL++L+C  G +Q+ AV  V+E  PS W 
Sbjct: 189 GTLLILLGCVAWSGFYVLQSITIKTYP-ADLSLSALICLAGAVQSFAVALVVERHPSGWA 247

Query: 254 IGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENI 313
           +GWD  L A  Y GIV+S I+Y+VQG+V+K RGPVF TAF+PL MI+VA++ SFIL E I
Sbjct: 248 VGWDARLFAPLYTGIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQI 307

Query: 314 YLGSVLGAILIVVGLYSVLWGKHKEK-------MEEFGVDEIPDPVKGNQVNGNFTASAM 366
           + G V+G  +I  GLY V+WGK K+        +E+  + E+P   K    N       +
Sbjct: 308 HFGCVIGGAVIAAGLYMVVWGKGKDYEVSGLDILEKNSLQELPITTKSEDDN------KL 361

Query: 367 IEDIEANHHVELQKSEANN 385
           +  I  N +V +     +N
Sbjct: 362 VSSISDNSNVTIPGGAHSN 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNA5|WTR39_ARATH WAT1-related protein At5g13670 OS=Arabidopsis thaliana GN=At5g13670 PE=2 SV=1

 Score =  305 bits (782), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 149/329 (45%), Positives = 228/329 (69%), Gaps = 4/329 (1%)

Query: 12  ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ 71
           E ++P+ A++ +Q  YA M+I+ K++LN+GMS +VLV YR A A+A+I PFA  LER  +
Sbjct: 4   ERARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILERNTR 63

Query: 72  PKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEK 131
           PK+TFK+ +QI +L+L  PV++QN YY+G+K T+ TF+ A+ N LPAMTF+MA + ++EK
Sbjct: 64  PKLTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFKLEK 123

Query: 132 INMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDW 191
           + +++   QAK+VGT V + GAM+MT  KG ++EL WT ++   +           + D 
Sbjct: 124 VTIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLNGHTHAMRI-PKQADI 182

Query: 192 FLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKP-S 250
             GSI L+ +  +W+   +LQ K L  YK  +LSLT+LMC +G L+A  +  + E K  S
Sbjct: 183 ARGSIMLVASCFSWSCYIILQAKILAQYK-AELSLTALMCIMGMLEATVMGLIWERKNMS 241

Query: 251 VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILA 310
           VW+I  D+ LLA+ Y G+V S ++Y+V G   K+RGPVF +AF+PL M++VAI+ +F+  
Sbjct: 242 VWKINPDVTLLASIYGGLV-SGLAYYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFL 300

Query: 311 ENIYLGSVLGAILIVVGLYSVLWGKHKEK 339
           E +Y+G V+G+++IV+G+Y VLWGK K+K
Sbjct: 301 EKVYVGRVIGSVVIVIGIYLVLWGKSKDK 329

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
224057224	407	predicted protein [Populus trichocarpa]	0.985	0.990	0.783	1e-178
225464037	403	PREDICTED: auxin-induced protein 5NG4 is	0.948	0.962	0.786	1e-177
356510395	398	PREDICTED: auxin-induced protein 5NG4-li	0.877	0.902	0.830	1e-176
356515312	396	PREDICTED: auxin-induced protein 5NG4-li	0.904	0.934	0.781	1e-175
358248156	409	uncharacterized protein LOC100804390 [Gl	0.926	0.926	0.782	1e-174
359487123	412	PREDICTED: auxin-induced protein 5NG4 [V	0.936	0.929	0.775	1e-173
255569157	415	Auxin-induced protein 5NG4, putative [Ri	0.982	0.968	0.748	1e-173
356554955	409	PREDICTED: auxin-induced protein 5NG4-li	0.926	0.926	0.784	1e-173
224073025	352	predicted protein [Populus trichocarpa]	0.860	1.0	0.833	1e-168
357515445	395	Auxin-induced protein 5NG4 [Medicago tru	0.960	0.994	0.715	1e-167

>gi|224057224|ref|XP_002299181.1| predicted protein [Populus trichocarpa] gi|222846439|gb|EEE83986.1| predicted protein [Populus trichocarpa]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 322/411 (78%), Positives = 362/411 (88%), Gaps = 8/411 (1%)

Query: 1   MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIA 60
           M+ L CCS FLE+SKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHA ATAVIA
Sbjct: 1   MKNLGCCSKFLESSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAIATAVIA 60

Query: 61  PFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMT 120
           PFA   ERK QP+ITF VFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMT
Sbjct: 61  PFALIFERKMQPRITFPVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMT 120

Query: 121 FVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDA 180
           FVMAVI RMEK++MKKVRCQAK+VGTAVTVAGAM+MTLYKGPIVE+ W++H HP  KS  
Sbjct: 121 FVMAVIFRMEKLDMKKVRCQAKLVGTAVTVAGAMLMTLYKGPIVEMLWSKHIHPR-KSFV 179

Query: 181 TTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIA 240
           T +T +++KDWF GSIFLIIATLAW+SLFVLQTKAL+TYKNHQLSLTSLMCF+GTLQAIA
Sbjct: 180 TDTTGTTDKDWFKGSIFLIIATLAWSSLFVLQTKALKTYKNHQLSLTSLMCFIGTLQAIA 239

Query: 241 VTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMII 300
           VTFV+EHKPSVW IGWDMNLLAAAYAGIVTSSISY+VQG+VIKK+GPVFATAFSPLMMII
Sbjct: 240 VTFVMEHKPSVWAIGWDMNLLAAAYAGIVTSSISYYVQGIVIKKKGPVFATAFSPLMMII 299

Query: 301 VAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGN 360
           VAIMGSFILAE I+LG ++G++LIV+GLYSVLWGKHKEKM E   +EIP+PVKG Q NGN
Sbjct: 300 VAIMGSFILAEKIFLGGIVGSVLIVIGLYSVLWGKHKEKM-EIDPEEIPEPVKGVQGNGN 358

Query: 361 FTASAMIEDIEANHHVELQKSE-ANNKLPLVALSM-LHVPAADTNEVHQQP 409
             +  +IEDIEAN  V+LQK++ A +     A+SM + +P     E +Q+P
Sbjct: 359 --SMLVIEDIEAN-EVKLQKAKPAISNFSATAMSMPMALPGLPIKE-NQEP 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464037|ref|XP_002267371.1| PREDICTED: auxin-induced protein 5NG4 isoform 1 [Vitis vinifera]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 310/394 (78%), Positives = 345/394 (87%), Gaps = 6/394 (1%)

Query: 1   MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIA 60
           ME  RCC  FL +SKPY AMISLQFGYAGMNIITKVSLN GMSHYVLVVYRHAFATAVIA
Sbjct: 1   MELKRCCGGFLHSSKPYLAMISLQFGYAGMNIITKVSLNHGMSHYVLVVYRHAFATAVIA 60

Query: 61  PFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMT 120
           PFA FLERKAQPKITF+VFMQIFVLALLGPVIDQNFYYAGLK TSPTFSCAMSNMLPAMT
Sbjct: 61  PFAIFLERKAQPKITFRVFMQIFVLALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMT 120

Query: 121 FVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDA 180
           FVMAVI RMEKI+MK+VRCQAKVVGT VTVAGAM+MTLYKGPI+E+ WT+H   H     
Sbjct: 121 FVMAVIFRMEKIDMKRVRCQAKVVGTIVTVAGAMVMTLYKGPIMEMVWTKHM--HTSKSV 178

Query: 181 TTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIA 240
            + T S++KDWF+GSIF+IIATLAWASLFVLQ  AL+TYK+HQLSLT+L+CF+GTLQAIA
Sbjct: 179 GSGTTSTDKDWFMGSIFVIIATLAWASLFVLQAHALKTYKHHQLSLTTLICFIGTLQAIA 238

Query: 241 VTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMII 300
           VTFV+EHK SVW IGWDMNLLAAAYAGIVTSSISY+VQGLVIK RGPVFATAFSPLMMII
Sbjct: 239 VTFVMEHKTSVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVIKSRGPVFATAFSPLMMII 298

Query: 301 VAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGN 360
           VAIMGSFILAE I+LG VLGAILIV GLYSVLWGK+KE +E+   +EIP+ +KG Q NGN
Sbjct: 299 VAIMGSFILAEKIFLGGVLGAILIVAGLYSVLWGKYKENLEKKQEEEIPEAIKGAQGNGN 358

Query: 361 FTASAMIEDIEANHHVELQKSEANNKLPLVALSM 394
               ++I+DI+ N  +E+QK+EA  KL  VA+SM
Sbjct: 359 --GLSIIDDIQTN-DIEMQKAEA-KKLSSVAISM 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510395|ref|XP_003523924.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 299/360 (83%), Positives = 331/360 (91%), Gaps = 1/360 (0%)

Query: 2   EKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAP 61
           EKLR  +NFLE SKPYFAMI+LQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAV+AP
Sbjct: 4   EKLRSGANFLENSKPYFAMIALQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVVAP 63

Query: 62  FAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTF 121
           FAF LERKAQP+I F +FMQIF LALLGPVIDQNFYYAGLK TSPTFSCAMSN+LPAMTF
Sbjct: 64  FAFILERKAQPRIKFPIFMQIFFLALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTF 123

Query: 122 VMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDK-SDA 180
           VMAV+CRMEKINMKKVRCQAKVVGT VTVAG M+MTLYKGP VE+ WT+HA  H + ++A
Sbjct: 124 VMAVLCRMEKINMKKVRCQAKVVGTLVTVAGTMLMTLYKGPRVEMVWTKHAPHHGQINNA 183

Query: 181 TTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIA 240
           T +T  S+KDWF+GSI LIIATLAWASLFVLQ KA+ETYKNHQLSLTSL+CF+GTLQAIA
Sbjct: 184 TYTTTYSDKDWFIGSILLIIATLAWASLFVLQAKAIETYKNHQLSLTSLICFIGTLQAIA 243

Query: 241 VTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMII 300
           VTF++EHKPSVW IGWDMNLLAAAYAGIVTSSISY+VQGLVIKK+GPVFATAFSPLMMII
Sbjct: 244 VTFIMEHKPSVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMII 303

Query: 301 VAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGN 360
           VAIMGSFILAE I+LG VLGAILIV+GLYSVLWGKHKE++E+   D+IP P+KG Q++GN
Sbjct: 304 VAIMGSFILAEQIFLGGVLGAILIVLGLYSVLWGKHKEQVEKNVADDIPLPLKGAQLDGN 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515312|ref|XP_003526345.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 301/385 (78%), Positives = 343/385 (89%), Gaps = 15/385 (3%)

Query: 2   EKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAP 61
           EKLR C+NFLE SKPYFAMI++QFGYAGMNIITK+SLNRGMSHYVLVVYRHAFATAV+AP
Sbjct: 4   EKLRSCANFLENSKPYFAMIAIQFGYAGMNIITKISLNRGMSHYVLVVYRHAFATAVVAP 63

Query: 62  FAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTF 121
           FAF  ERKAQP+ITF +FMQIF+LALLGPVIDQNFYYAGLK TSPTFSCAMSN+LPAMTF
Sbjct: 64  FAFIFERKAQPRITFPIFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMTF 123

Query: 122 VMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDK--SD 179
           VMAV+CRMEKINMKKVRCQAKVVGT VTVAGAM+MTLYKGP+V   WT+ A PH+   ++
Sbjct: 124 VMAVLCRMEKINMKKVRCQAKVVGTLVTVAGAMLMTLYKGPMV---WTKDA-PHNGQINN 179

Query: 180 ATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAI 239
           AT +T  S+KDWF+GSI LIIATLAWASLFVLQ KA+ETYKNHQLSLTSL+CF+GTLQAI
Sbjct: 180 ATNTTTYSDKDWFIGSILLIIATLAWASLFVLQAKAIETYKNHQLSLTSLICFIGTLQAI 239

Query: 240 AVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMI 299
           AVTFV+EHKPSVW IGWDMNLLAAAYAGIVTSSI+Y+VQGLVIKK+GPVFATAFSPLMMI
Sbjct: 240 AVTFVMEHKPSVWTIGWDMNLLAAAYAGIVTSSITYYVQGLVIKKKGPVFATAFSPLMMI 299

Query: 300 IVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNG 359
           IVAIMGSFIL+E ++LG VLGAILIV+GLYSVLWGKHKE++ +  V++IP PVKG Q++G
Sbjct: 300 IVAIMGSFILSEQLFLGGVLGAILIVIGLYSVLWGKHKEQVVKNEVEDIPLPVKGAQLDG 359

Query: 360 NFTASAMIEDIEANHHVELQKSEAN 384
           N     +I+  +       QKS++N
Sbjct: 360 N--PETLIDSTD-------QKSDSN 375

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248156|ref|NP_001239827.1| uncharacterized protein LOC100804390 [Glycine max] gi|255635382|gb|ACU18044.1| unknown [Glycine max]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 302/386 (78%), Positives = 335/386 (86%), Gaps = 7/386 (1%)

Query: 2   EKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAP 61
           EKLR C+ F  +SKPY AMISLQFGYAGMNIITKVSLN+GMSHYVLVVYRHAFATAVIAP
Sbjct: 4   EKLRGCAKFFASSKPYLAMISLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATAVIAP 63

Query: 62  FAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTF 121
           FAF  ERK QPKITF VFMQIF+LALLGPVIDQNFYYAGLK TSPTFSCAMSNMLPAMTF
Sbjct: 64  FAFIFERKGQPKITFPVFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTF 123

Query: 122 VMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDAT 181
           VMAV CRMEKI++KKVRC AK+VGT VTVAGAM+MTLY+GPIVE+ W +H  PH+K++AT
Sbjct: 124 VMAVFCRMEKIDIKKVRCIAKIVGTLVTVAGAMLMTLYRGPIVEMVWAKH--PHNKTNAT 181

Query: 182 TSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAV 241
           T+T S +KDWFLG  FLIIATLAWASLFVLQ KA++TYKNHQLSLTSL+CF+GTLQAIAV
Sbjct: 182 TTTGSLDKDWFLGCTFLIIATLAWASLFVLQAKAIQTYKNHQLSLTSLVCFIGTLQAIAV 241

Query: 242 TFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIV 301
           TFV+EH PSVW+IGWD++LLAAAYAGIVTSSISY+VQGLVIK +GPVFATAFSPLMMIIV
Sbjct: 242 TFVVEHNPSVWRIGWDVSLLAAAYAGIVTSSISYYVQGLVIKMKGPVFATAFSPLMMIIV 301

Query: 302 AIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGNF 361
           AIMGSFILAE IYLG V+GAILIV+GLYSVLWGKHKE++E    DEIP PVK +Q+    
Sbjct: 302 AIMGSFILAEQIYLGGVIGAILIVIGLYSVLWGKHKEQIESKVADEIPLPVKDSQIA--- 358

Query: 362 TASAMIEDIEANHHVEL--QKSEANN 385
             +  I D   N   E   QK EANN
Sbjct: 359 VIAGPIIDATDNFTEEKYGQKGEANN 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487123|ref|XP_003633520.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 307/396 (77%), Positives = 342/396 (86%), Gaps = 13/396 (3%)

Query: 6   CCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFF 65
           CC  FL +SKPY AMISLQFGYAGMNIITKVSLN GMSHYVLVVYRHAFATAVIAPFA F
Sbjct: 8   CCGGFLHSSKPYLAMISLQFGYAGMNIITKVSLNHGMSHYVLVVYRHAFATAVIAPFAIF 67

Query: 66  LERKAQPKITFKVFMQIFVLALLG-------PVIDQNFYYAGLKFTSPTFSCAMSNMLPA 118
           LERKAQPKITF+VFMQIFVLALLG       PVIDQNFYYAGLK TSPTFSCAMSNMLPA
Sbjct: 68  LERKAQPKITFRVFMQIFVLALLGKFVWIDRPVIDQNFYYAGLKLTSPTFSCAMSNMLPA 127

Query: 119 MTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKS 178
           MTFVMAVI RMEKI+MK+VRCQAKVVGT VTVAGAM+MTLYKGPI+E+ WT+H H     
Sbjct: 128 MTFVMAVIFRMEKIDMKRVRCQAKVVGTIVTVAGAMVMTLYKGPIMEMVWTKHMH--TSK 185

Query: 179 DATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQA 238
              + T S++KDWF+GSIF+IIATLAWASLFVLQ  AL+TYK+HQLSLT+L+CF+GTLQA
Sbjct: 186 SVGSGTTSTDKDWFMGSIFVIIATLAWASLFVLQAHALKTYKHHQLSLTTLICFIGTLQA 245

Query: 239 IAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMM 298
           IAVTFV+EHK SVW IGWDMNLLAAAYAGIVTSSISY+VQGLVIK RGPVFATAFSPLMM
Sbjct: 246 IAVTFVMEHKTSVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVIKSRGPVFATAFSPLMM 305

Query: 299 IIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVN 358
           IIVAIMGSFILAE I+LG VLGAILIV GLYSVLWGK+KE +E+   +EIP+ +KG Q N
Sbjct: 306 IIVAIMGSFILAEKIFLGGVLGAILIVAGLYSVLWGKYKENLEKKQEEEIPEAIKGAQGN 365

Query: 359 GNFTASAMIEDIEANHHVELQKSEANNKLPLVALSM 394
           GN    ++I+DI+ N  +E+QK+EA  KL  VA+SM
Sbjct: 366 GN--GLSIIDDIQTN-DIEMQKAEA-KKLSSVAISM 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569157|ref|XP_002525547.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223535126|gb|EEF36806.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 312/417 (74%), Positives = 356/417 (85%), Gaps = 15/417 (3%)

Query: 2   EKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAP 61
            +L CC+ FLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVI P
Sbjct: 3   NQLGCCAKFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIFP 62

Query: 62  FAFFLERKAQPKITFKVFMQIFVLALLG-----PVIDQNFYYAGLKFTSPTFSCAMSNML 116
           FAF  ERKAQP+ITF +F+Q+FVLA LG     PVIDQNFYYAGLKFTSPTFSCAMSNML
Sbjct: 63  FAFIFERKAQPRITFPIFLQLFVLAFLGIYITRPVIDQNFYYAGLKFTSPTFSCAMSNML 122

Query: 117 PAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHD 176
           PAMTF+MA+I RMEK+++KK+RCQAK+ GT VTVAGAM+MTLYKGPIVE+ W++H HP  
Sbjct: 123 PAMTFIMALIFRMEKLDIKKIRCQAKIAGTVVTVAGAMLMTLYKGPIVEMVWSKHVHPR- 181

Query: 177 KSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTL 236
           KS  T +T +++KDW  GSI LIIATLAWASLFVLQTKAL+TYKNHQLSLT+L+CF+GTL
Sbjct: 182 KSYVTDTTGTTDKDWLKGSILLIIATLAWASLFVLQTKALKTYKNHQLSLTTLVCFMGTL 241

Query: 237 QAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPL 296
           QAIAVTF +EHK S WQIGWDMNLLAAAYAGIVTSSISY+VQGLVIKKRGPVFATAFSPL
Sbjct: 242 QAIAVTFAMEHKTSAWQIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKRGPVFATAFSPL 301

Query: 297 MMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQ 356
           MMI+VAIMGSFILAE I+LG V+GA+LIV+GLY+VLWGKHKE+M +   +EI DPVKG Q
Sbjct: 302 MMIVVAIMGSFILAEKIFLGGVIGAVLIVIGLYAVLWGKHKERMVQDSDEEILDPVKGVQ 361

Query: 357 VNGNFTASAMIEDIEANHHVELQKSEA---NNKLPLVALSM-LHVPAADTNEVHQQP 409
            NGN   S  I+DIEAN  V+LQK EA   NNKL  +A++M + +P     +V Q P
Sbjct: 362 GNGN---SVAIQDIEAN-EVDLQKVEANNNNNKLSAMAITMPMPIPELPI-KVSQDP 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554955|ref|XP_003545806.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/386 (78%), Positives = 333/386 (86%), Gaps = 7/386 (1%)

Query: 2   EKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAP 61
           EKLR C+N   +SKPY AMISLQFGYAGMNIITKVSLN+GMSHYVLVVYRHAFATAVIAP
Sbjct: 4   EKLRGCANVFASSKPYLAMISLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATAVIAP 63

Query: 62  FAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTF 121
           FA   ERK QPKITF VFMQIF+LALLGPVIDQNFYYAGLK TSPTFSCAMSNMLPAMTF
Sbjct: 64  FAIIFERKGQPKITFPVFMQIFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTF 123

Query: 122 VMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDAT 181
           VMAV CRMEKI +KKVRC AK+VGT VTVAGAM+MTLY+GPIVE+ W +H  PH+K++AT
Sbjct: 124 VMAVFCRMEKIEIKKVRCMAKIVGTLVTVAGAMLMTLYRGPIVEMVWAKH--PHNKTNAT 181

Query: 182 TSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAV 241
           T+T S +KDWFLG  FLIIATLAWASLFVLQ KA++TYKNHQLSLTSL+CF+GTLQAIAV
Sbjct: 182 TTTESFDKDWFLGCTFLIIATLAWASLFVLQAKAIQTYKNHQLSLTSLVCFIGTLQAIAV 241

Query: 242 TFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIV 301
           TFV+EH PSVW+IGWD++LLAAAYAGIVTSSISY+VQGLVIK +GPVFATAFSPLMMIIV
Sbjct: 242 TFVVEHNPSVWRIGWDVSLLAAAYAGIVTSSISYYVQGLVIKMKGPVFATAFSPLMMIIV 301

Query: 302 AIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGNF 361
           AIMGSFILAE IYLG V+GAILIV+GLYSVLWGKHKE++E    DEIP PVK  Q+    
Sbjct: 302 AIMGSFILAEQIYLGGVIGAILIVIGLYSVLWGKHKEQIESKVADEIPLPVKDAQI--AV 359

Query: 362 TASAMIEDIEANHHVEL--QKSEANN 385
            A  MI D   N   E   QK EANN
Sbjct: 360 IAGPMI-DATDNFTEEKYGQKGEANN 384

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073025|ref|XP_002303952.1| predicted protein [Populus trichocarpa] gi|222841384|gb|EEE78931.1| predicted protein [Populus trichocarpa]

 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 295/354 (83%), Positives = 325/354 (91%), Gaps = 2/354 (0%)

Query: 7   CSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFL 66
           CS FLE+SKPYFAMI+LQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFA F 
Sbjct: 1   CSKFLESSKPYFAMIALQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFALFF 60

Query: 67  ERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVI 126
           ERK QPKITF VFMQIFVLALLGPVIDQNFYYAGLK+TSPTFSCAMSNMLPAMTFVMAVI
Sbjct: 61  ERKMQPKITFPVFMQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVI 120

Query: 127 CRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTAS 186
            RMEK+++KKVRCQAK++GT VTVAGAM MTLYKGPIVE+ W++H HP  KS  T +T +
Sbjct: 121 FRMEKLDIKKVRCQAKLLGTLVTVAGAMFMTLYKGPIVEMLWSKHIHPR-KSYVTDTTGT 179

Query: 187 SEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIE 246
           ++KDWF GSI LIIATLAWASLFVLQTKAL+TYKNHQL+LTSL+CF+GTLQAIAVTF +E
Sbjct: 180 TDKDWFKGSILLIIATLAWASLFVLQTKALKTYKNHQLTLTSLVCFIGTLQAIAVTFTME 239

Query: 247 HKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGS 306
           HK SVW+IGWDMNLLAAAYAGIVTSSISY+VQGLVIKK+GPVFATAFSPLMMI+VAIMGS
Sbjct: 240 HKSSVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIVVAIMGS 299

Query: 307 FILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGN 360
           FILAE IYLG ++G+ LIV+GLYSVLWGKHKEKM E   +EIP+PVKG Q NGN
Sbjct: 300 FILAEKIYLGGIVGSALIVMGLYSVLWGKHKEKM-EVDPEEIPEPVKGIQGNGN 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515445|ref|XP_003628011.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355522033|gb|AET02487.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 292/408 (71%), Positives = 344/408 (84%), Gaps = 15/408 (3%)

Query: 1   MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIA 60
           MEK    SN  E  K Y AMI LQFGYAGMNIITKVSLN+GMSHYVLVVYRHAFATA IA
Sbjct: 3   MEK----SNSFENMKHYTAMICLQFGYAGMNIITKVSLNQGMSHYVLVVYRHAFATASIA 58

Query: 61  PFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMT 120
           PFAF  ERK QPKITF++F+QIFVLALLGPVIDQNFYYAGLK TSPTFSCAMSN+LPAMT
Sbjct: 59  PFAFMFERKGQPKITFRIFLQIFVLALLGPVIDQNFYYAGLKLTSPTFSCAMSNVLPAMT 118

Query: 121 FVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDA 180
           FVMAV+CRMEKIN+K+VRCQAK++GT +TVAGAM+MTLYKGPIVE+ W ++ HP +++  
Sbjct: 119 FVMAVLCRMEKINIKQVRCQAKILGTILTVAGAMLMTLYKGPIVEMVWAKNRHPQNETHE 178

Query: 181 TTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIA 240
           T++T SSE+DW LG  FLIIAT AWASLFVLQ K +ETYK+HQLSLTSL+ F+GTLQAIA
Sbjct: 179 TSTTGSSERDWILGCTFLIIATFAWASLFVLQAKVIETYKHHQLSLTSLVVFIGTLQAIA 238

Query: 241 VTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMII 300
           VTFV EH PSVW+IGWDM+LLA+AYAGIVTSS++Y+VQGLVI+K+GPVFATAFSPLMMII
Sbjct: 239 VTFVAEHDPSVWRIGWDMSLLASAYAGIVTSSLAYYVQGLVIRKKGPVFATAFSPLMMII 298

Query: 301 VAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQVNGN 360
           VAIMGSFILAE IY G V+GAILIV+GLYSVLWGKHKE++E   VD+IP P+KG Q++GN
Sbjct: 299 VAIMGSFILAEQIYSGGVMGAILIVIGLYSVLWGKHKEEIER-KVDDIPLPIKGPQMSGN 357

Query: 361 FTASAMIEDIEANHHVELQKSEANNKLPLVALSMLHVPAADTNEVHQQ 408
             +  +I+D +   H +++  + NN L  VA+S+       TN V+QQ
Sbjct: 358 --SGLVIDDTDQVKHGQVE--DTNNMLSSVAISI------PTNNVNQQ 395

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.965	0.982	0.625	2.9e-135
TAIR|locus:2058460	394	UMAMIT11 "Usually multiple aci	0.904	0.939	0.494	4.1e-97
TAIR|locus:2102629	377	UMAMIT10 "Usually multiple aci	0.799	0.867	0.538	6.1e-94
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.904	0.951	0.461	8.9e-86
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.792	0.866	0.490	8.2e-83
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.889	0.975	0.440	1e-82
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.797	0.857	0.474	5.2e-81
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.853	0.943	0.453	1.2e-79
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.799	0.851	0.438	1.9e-76
TAIR|locus:2173189	377	UMAMIT15 "Usually multiple aci	0.794	0.862	0.428	1.6e-72

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 259/414 (62%), Positives = 323/414 (78%)

Query:     1 MEKLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIA 60
             ME++  C +FL +SKPYFAMISLQFGYAGMNIITK+SLN GMSHYVLVVYRHA ATAVIA
Sbjct:     3 MEEISSCESFLTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIA 62

Query:    61 PFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMT 120
             PFAFF ERKAQPKITF +FMQ+F+L LLGPVIDQNFYY GLK+TSPTFSCAMSNMLPAMT
Sbjct:    63 PFAFFFERKAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMT 122

Query:   121 FVMAVICRMEKINMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPHDKSDX 180
             F++AV+ RME +++KK+ CQ             M+MT+YKGPIVELFWT++ H  D S  
Sbjct:   123 FILAVLFRMEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHA 182

Query:   181 XXXXX---XXEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQ 237
                       +K++  GSI LI ATLAWASLFVLQ K L+TY  HQLSLT+L+CF+GTLQ
Sbjct:   183 NTTSSKNSSSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQ 242

Query:   238 AIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLM 297
             A+AVTFV+EH PS W+IGWDMNLLAAAY+GIV SSISY+VQG+V+KKRGPVFATAFSPLM
Sbjct:   243 AVAVTFVMEHNPSAWRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLM 302

Query:   298 MIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDEIPDPVKGNQV 357
             M+IVA+MGSF+LAE I+LG V+GA+LIV+GLY+VLWGK KE   +  + E+       ++
Sbjct:   303 MVIVAVMGSFVLAEKIFLGGVIGAVLIVIGLYAVLWGKQKEN--QVTICELA------KI 354

Query:   358 NGNFTASAMIEDIEANHHVELQKSEANNKLPLVALSMLHVPAADTN--EVHQQP 409
             + N   S + ED+EAN   +++ SE +N +  ++  ++ VP ++T+  +  Q+P
Sbjct:   355 DSN---SKVTEDVEANGS-KMKISEGDNSM--LSTIVISVPLSETHLKKTIQEP 402

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2058460 UMAMIT11 "Usually multiple acids move in and out Transporters 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 190/384 (49%), Positives = 267/384 (69%)

Query:    12 ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ 71
             E++KPYFAM+ LQFGYAGMN++TK  L+RGMSHYVLV YR+AFATA IAPFA   ERK +
Sbjct:     7 ESAKPYFAMVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query:    72 PKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEK 131
              K+TF +FM+IF+LALLGPVIDQN YY GLK TSPTFS A+SN++PA+T ++A + RMEK
Sbjct:    67 SKMTFPIFMRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEK 126

Query:   132 INMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPHDKSDXXXXXXXXEKDW 191
             + M+KVRC              ++M  YKGP +  F         +S           D+
Sbjct:   127 VEMRKVRCLVKVMGTLVTVVGSILMIFYKGPFINFF---------RSHLTAASSPPTADY 177

Query:   192 FLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV 251
                ++FL++A+L+WAS FVLQ   L+ Y  H LS+++++CF+GTLQ++A+ FV+EH PS 
Sbjct:   178 LKAAVFLLLASLSWASFFVLQAATLKKYSAH-LSMSTMVCFMGTLQSLALAFVMEHNPSA 236

Query:   252 WQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAE 311
               IG+DMNLLA+AYAGI++SSI+Y+VQGL+++++GPVF TAF+PL+++IV+IM  F+L +
Sbjct:   237 LNIGFDMNLLASAYAGIMSSSIAYYVQGLMMQRKGPVFVTAFNPLIVVIVSIMSFFVLGQ 296

Query:   312 NIYLGSVLGAILIVVGLYSVLWGKH-KEKMEEFGVDEIPDPVKGNQVNGNFTASAMIEDI 370
              IYLG V+G ++++VG+Y+VLWGKH  +  EE   ++    VK    N   T    I++ 
Sbjct:   297 GIYLGGVIGVVVLMVGVYAVLWGKHVDDDGEETRHEDNVVAVKCCSGNNGLTIMPKIDEA 356

Query:   371 EANHHVELQK--SEANNKLPLVAL 392
             +    VE  K  SE  + +P V +
Sbjct:   357 D-EEDVETGKATSEKESSVPEVVV 379

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102629 UMAMIT10 "Usually multiple acids move in and out Transporters 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 181/336 (53%), Positives = 250/336 (74%)

Query:    12 ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ 71
             E++KPYFAM+ LQFGYAGMN++TKV L+RGMSHYVLV YR+AFATA IAPFA   ERK +
Sbjct:     7 ESAKPYFAMVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVR 66

Query:    72 PKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEK 131
             PK+TF +FMQIFVLALLGP+IDQN YYAGLK TSPTF+ A++N++PA+TF++++ICRMEK
Sbjct:    67 PKMTFPIFMQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEK 126

Query:   132 INMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPHDKSDXXXXXXXXEKDW 191
             + M+KVR Q             M+M L+K P++  F   H   H  S          +D+
Sbjct:   127 VEMRKVRFQAKVVGTLVIVVGAMLMILFKIPLIT-FLRSHLTGHALSPAG-------EDY 178

Query:   192 FLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV 251
                ++FL+IA+ +WAS FVLQ   L+ Y +H LSL++++CF+GTLQ+ A+TFV+E   S 
Sbjct:   179 LKATVFLLIASFSWASFFVLQAATLKRYSSH-LSLSTMVCFMGTLQSTALTFVMEPNLSA 237

Query:   252 WQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAE 311
             W IG+DMNLLA+AYAGI++SSI+Y+VQG++ K++  +F TAF+PL++II +I+G  IL +
Sbjct:   238 WNIGFDMNLLASAYAGIMSSSIAYYVQGMMTKQKSVIFVTAFNPLVVIIGSIIGFLILNQ 297

Query:   312 NIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVDE 347
              + LG VLG  ++VVG+ +VLWGK  +  EE  ++E
Sbjct:   298 TLNLGGVLGMAILVVGVCTVLWGKEGDIDEEENIEE 333

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 175/379 (46%), Positives = 248/379 (65%)

Query:    11 LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKA 70
             + + KPY AMIS+QFGYAGM IIT VSL  GM+HYVL VYRHA ATAVIAPFA F ERK 
Sbjct:     6 MNSLKPYLAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKI 65

Query:    71 QPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRME 130
             +PK+TF++F+QI +L  + PV+DQN YY G+ +TS TF+ A +N+LPA+TFV+A+I R+E
Sbjct:    66 RPKMTFRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLE 125

Query:   131 KINMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVEL--FWTQHAHPHDK---SDXXXXXX 185
              +N KKVR               ++MTLYKGPIV+   F        D    S       
Sbjct:   126 SVNFKKVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAA 185

Query:   186 XXEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVI 245
               +K W  G++ L+  T  WA  F+LQ+  L+ Y   +LSLT+L+C +GTL+  AV+ V 
Sbjct:   186 AMDKHWIPGTLMLLGRTFGWAGFFILQSFTLKQYPA-ELSLTTLICLMGTLEGTAVSLVT 244

Query:   246 EHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMG 305
                 S W+IG+D NL AAAY+G++ S ++Y+VQG+V+++RGPVF   F+PL ++I A +G
Sbjct:   245 VRDLSAWKIGFDSNLFAAAYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAALG 304

Query:   306 SFILAENIYLGSVLGAILIVVGLYSVLWGKHKEK-MEEFGVDEIPDPVKGNQVNGNFTAS 364
               +L+E+I+LGSV+G + I+VGLY+V+WGK K+K M +   D    P+K + V    T  
Sbjct:   305 VVVLSESIHLGSVIGTLFIIVGLYTVVWGKGKDKRMTDDDEDCKGLPIK-SPVKPVDTGK 363

Query:   365 AMIEDIEANHHVELQKSEA 383
              +  ++E     E Q+++A
Sbjct:   364 GLAAELEMKSK-EGQEAKA 381

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 162/330 (49%), Positives = 224/330 (67%)

Query:    11 LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKA 70
             L+T KP+  ++SLQFGYAG++II K +LN+GMS +VL  YRH  AT  IAPFA+FL+RK 
Sbjct:     3 LKTWKPFITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKI 62

Query:    71 QPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRME 130
             +PK+T  +F +I +L LL P IDQN YY G+K+TS TF+ AM+N+LPA  F+MA I R+E
Sbjct:    63 RPKMTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLE 122

Query:   131 KINMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPHDKSDXXXXXXXXEKD 190
             K+N+KK+  Q             M+MT+ KGP++ L W   A+PHD           ++D
Sbjct:   123 KVNVKKIHSQAKILGTIVTVGGAMLMTVVKGPLIPLPW---ANPHDIHQDSSNTGV-KQD 178

Query:   191 WFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEH-KP 249
                G+  + I  + WA    LQ   L++Y   +LSLT+ +CF+G++++  V   IE   P
Sbjct:   179 LTKGASLIAIGCICWAGFINLQAITLKSYPV-ELSLTAYICFLGSIESTIVALFIERGNP 237

Query:   250 SVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFIL 309
             S W I  D  LLAA Y G++ S I Y+VQG+++K RGPVF TAF+PL M+IVAI+GS IL
Sbjct:   238 SAWAIHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIIL 297

Query:   310 AENIYLGSVLGAILIVVGLYSVLWGKHKEK 339
             AE ++LG +LGAI+IV+GLYSVLWGK K++
Sbjct:   298 AEVMFLGRILGAIVIVLGLYSVLWGKSKDE 327

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 163/370 (44%), Positives = 233/370 (62%)

Query:    11 LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKA 70
             ++  KP  A+ISLQFGYAGM IIT VS   GM+H++L  YRH  AT VIAPFA  LERK 
Sbjct:     6 MDKLKPIIAIISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKI 65

Query:    71 QPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRME 130
             +PK+T+ +F++I  L  L P++DQN YY G+K TS T+S A  N LPA+TF+MAVI R+E
Sbjct:    66 RPKMTWPLFLRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIE 125

Query:   131 KINMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPHDKSDXXXXXXXXEKD 190
              +N+KK R               M+MTLYKGP +ELF T H+  H  S         +++
Sbjct:   126 TVNLKKTRSLAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETT-DQN 184

Query:   191 WFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPS 250
             W  G++ ++ +   WA  F+LQ+  L+ Y   +LSL   +C +GT+     + ++    S
Sbjct:   185 WVTGTLAVMGSITTWAGFFILQSFTLKKYPA-ELSLVMWICAMGTVLNTIASLIMVRDVS 243

Query:   251 VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILA 310
              W++G D   LAA Y+G+V S ++Y++Q +VI++RGPVF T+FSP+ MII A +G  +LA
Sbjct:   244 AWKVGMDSGTLAAVYSGVVCSGMAYYIQSIVIRERGPVFTTSFSPMCMIITAFLGVLVLA 303

Query:   311 ENIYLGSVLGAILIVVGLYSVLWGKHKEKM----EEFGVDEIPDPVKGNQVNGNFTASAM 366
             E I+LGS++GAI IV GLYSV+WGK K+++    E+ G+ E+P      +V G    S +
Sbjct:   304 EKIHLGSIIGAIFIVFGLYSVVWGKAKDEVISVEEKIGMQELPITNTSTKVEGGGITSEV 363

Query:   367 IEDIEANHHV 376
              E +  N  V
Sbjct:   364 NEGVTNNTQV 373

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 160/337 (47%), Positives = 225/337 (66%)

Query:     3 KLRCCSNFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPF 62
             K R C   +E ++P+ +M+ LQ G AGM+I++K  LN+GMS+YVLVVYRHA AT V+APF
Sbjct:     5 KKRDC---MEKARPFISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPF 61

Query:    63 AFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFV 122
             AF+ ++K +PK+T  +F +I +L LL PVIDQN YY G+K+T+ TF+ AM N+LPA+TFV
Sbjct:    62 AFYFDKKVRPKMTLMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFV 121

Query:   123 MAVICRMEKINMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPHDKSDXXX 182
             +A I  +E++ ++ +R               MIMTL KGP+++LFWT+    H+ +    
Sbjct:   122 LAYIFGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDI 181

Query:   183 XXXXXEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVT 242
                        G++ + I   ++A   +LQ   L TY   +LSLT+ +C +GT++  AV 
Sbjct:   182 HSAIK------GAVLVTIGCFSYACFMILQAITLRTYPA-ELSLTAWICLMGTIEGTAVA 234

Query:   243 FVIEH-KPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIV 301
              V+E   PS W IGWD  LL A Y+GIV S+++Y+V G+V+K RGPVF TAFSPL MIIV
Sbjct:   235 LVMEKGNPSAWAIGWDTKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIV 294

Query:   302 AIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKE 338
             AIM + I AE +YLG VLGA++I  GLY V+WGK K+
Sbjct:   295 AIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKD 331

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 164/362 (45%), Positives = 231/362 (63%)

Query:    11 LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKA 70
             +E  KP  A+ISLQFGYAGM IIT VS   GM H+VL  YRH  AT V+APFA   ERK 
Sbjct:     6 MEKIKPILAIISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKI 65

Query:    71 QPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRME 130
             +PK+T  +F ++  L +L P++DQN YY GLK TS +++ A +N LPA+TF++A+I R+E
Sbjct:    66 RPKMTLAIFWRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLE 125

Query:   131 KINMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPHDKSDXXXXXXXXEKD 190
              +N +KV                MIMTLYKGP +E+    H   H  S          + 
Sbjct:   126 TVNFRKVHSVAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSSTPTG----QH 181

Query:   191 WFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGT-LQAIAVTFVIEHKP 249
             W LG+I ++ +   WA+ F+LQ+  L+ Y   +LSL +L+C +GT L AIA + ++   P
Sbjct:   182 WVLGTIAIMGSISTWAAFFILQSYTLKVYPA-ELSLVTLICGIGTILNAIA-SLIMVRDP 239

Query:   250 SVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFIL 309
             S W+IG D   LAA Y+G+V S I+Y++Q +VIK+RGPVF T+FSP+ MII A +G+ +L
Sbjct:   240 SAWKIGMDSGTLAAVYSGVVCSGIAYYIQSIVIKQRGPVFTTSFSPMCMIITAFLGALVL 299

Query:   310 AENIYLGSVLGAILIVVGLYSVLWGKHKEK---MEEFGV---DEIPDPVKGNQVNGNFTA 363
             AE I+LGS++GA+ IV+GLYSV+WGK K++   ++E  V    E+P      Q NG+  +
Sbjct:   300 AEKIHLGSIIGAVFIVLGLYSVVWGKSKDEVNPLDEKIVAKSQELPITNVVKQTNGHDVS 359

Query:   364 SA 365
              A
Sbjct:   360 GA 361

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 146/333 (43%), Positives = 216/333 (64%)

Query:    15 KPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKI 74
             +PY  MI LQFG AG  I+   +LN+G + YV++VYR+  A  V+APFA   ERK +PK+
Sbjct:    12 RPYLLMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRPKM 71

Query:    75 TFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINM 134
             T  V  +I  L  L PV+DQ F Y G+  TS T++ A+ N+LP++TF++A I RMEK+N+
Sbjct:    72 TLSVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNI 131

Query:   135 KKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPH-DKSDXXXXXXXXEKDWFL 193
              +VR +             ++MTLYKGP++ L W+   +P+ D+ +          +W +
Sbjct:   132 AEVRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWS---NPNMDQQNGHTNNSQDHNNWVV 188

Query:   194 GSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQ 253
             G++ +++  +AW+  +VLQ+  ++TY    LSL++L+C  G +Q+ AV  V+E  PS W 
Sbjct:   189 GTLLILLGCVAWSGFYVLQSITIKTYPA-DLSLSALICLAGAVQSFAVALVVERHPSGWA 247

Query:   254 IGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENI 313
             +GWD  L A  Y GIV+S I+Y+VQG+V+K RGPVF TAF+PL MI+VA++ SFIL E I
Sbjct:   248 VGWDARLFAPLYTGIVSSGITYYVQGMVMKTRGPVFVTAFNPLCMILVALIASFILHEQI 307

Query:   314 YLGSVLGAILIVVGLYSVLWGKHKEKMEEFGVD 346
             + G V+G  +I  GLY V+WGK K+  E  G+D
Sbjct:   308 HFGCVIGGAVIAAGLYMVVWGKGKD-YEVSGLD 339

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173189 UMAMIT15 "Usually multiple acids move in and out Transporters 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 141/329 (42%), Positives = 218/329 (66%)

Query:    12 ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ 71
             E ++P+ A++ +Q  YA M+I+ K++LN+GMS +VLV YR A A+A+I PFA  LER  +
Sbjct:     4 ERARPFIAIVFIQCLYALMSIVAKLALNKGMSPHVLVAYRMAVASALITPFALILERNTR 63

Query:    72 PKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEK 131
             PK+TFK+ +QI +L+L  PV++QN YY+G+K T+ TF+ A+ N LPAMTF+MA + ++EK
Sbjct:    64 PKLTFKILLQIAILSLFEPVVEQNLYYSGMKLTTATFTSALCNALPAMTFIMACVFKLEK 123

Query:   132 INMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAHPHDKSDXXXXXXXXEKDW 191
             + +++   Q             M+MT  KG ++EL WT ++   +           + D 
Sbjct:   124 VTIERRHSQAKLVGTMVAIGGAMLMTFVKGNVIELPWTSNSRGLN-GHTHAMRIPKQADI 182

Query:   192 FLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKP-S 250
               GSI L+ +  +W+   +LQ K L  YK  +LSLT+LMC +G L+A  +  + E K  S
Sbjct:   183 ARGSIMLVASCFSWSCYIILQAKILAQYKA-ELSLTALMCIMGMLEATVMGLIWERKNMS 241

Query:   251 VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILA 310
             VW+I  D+ LLA+ Y G+V S ++Y+V G   K+RGPVF +AF+PL M++VAI+ +F+  
Sbjct:   242 VWKINPDVTLLASIYGGLV-SGLAYYVIGWASKERGPVFVSAFNPLSMVLVAILSTFVFL 300

Query:   311 ENIYLGSVLGAILIVVGLYSVLWGKHKEK 339
             E +Y+G V+G+++IV+G+Y VLWGK K+K
Sbjct:   301 EKVYVGRVIGSVVIVIGIYLVLWGKSKDK 329

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FL41	WTR38_ARATH	No assigned EC number	0.6570	0.9657	0.9825	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	4e-51
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	6e-12
pfam00892	126	pfam00892, EamA, EamA-like transporter family	3e-10
pfam00892	126	pfam00892, EamA, EamA-like transporter family	3e-07
TIGR00950	260	TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran	2e-05

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  175 bits (444), Expect = 4e-51
 Identities = 101/336 (30%), Positives = 187/336 (55%), Gaps = 25/336 (7%)

Query: 19  AMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLER-KAQPKITFK 77
           AM++ +    G++ + KV+ ++G++ Y  + Y +  A+ ++ P  FF  R ++ P ++  
Sbjct: 17  AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVS 76

Query: 78  VFMQIFVLALLGP--VIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMK 135
           +  +I +L  LG   VI     Y G+++++PT + A+SN+ PA+TF++A+I RMEK++ K
Sbjct: 77  ILSKIGLLGFLGSMYVITG---YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFK 133

Query: 136 KVRCQAKVVGTAVTVAGAMIMTLYKGPIV-------ELFWTQHAHPHDKSDATTSTASSE 188
           +    AKV+GT +++ GA+++  Y GP V        L + Q + P          +SS 
Sbjct: 134 ERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPP---------LSSSN 184

Query: 189 KDWFLGSIFLIIATLAWASLFVLQTKALETY-KNHQLSLTSLMCFVGTLQAIAVTFVIEH 247
            DW +G   L I  +  +  F+LQ   +  Y     +S    +C V  + ++    V ++
Sbjct: 185 SDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVC-VSIVTSMIGLVVEKN 243

Query: 248 KPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSF 307
            PSVW I +D+ L+      I+T S+ Y +    ++ +GP++   F PL ++I  +MG+ 
Sbjct: 244 NPSVWIIHFDITLITIVTMAIIT-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAI 302

Query: 308 ILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEF 343
            L +++YLG ++G ILI +G Y+V+WGK  E+ ++ 
Sbjct: 303 FLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQL 338

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 65.7 bits (160), Expect = 6e-12
 Identities = 56/323 (17%), Positives = 121/323 (37%), Gaps = 40/323 (12%)

Query: 17  YFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITF 76
             A++     +    I  K+++            R   A  ++ P           +   
Sbjct: 9   LLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGLRPAL 66

Query: 77  KVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAV-ICRMEKINMK 135
           + ++ + +LALLG  +     +  LK+TS + +  +  +LP  T ++AV +   E++++ 
Sbjct: 67  RPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL 126

Query: 136 KVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGS 195
           ++      +G  + +AG +++ L  G    L                          LG 
Sbjct: 127 QI------LGILLALAGVLLILLGGGGGGILSL------------------------LGL 156

Query: 196 IFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIG 255
           +  + A L WA    L  +         ++L  L+  +  L  + + F+      +    
Sbjct: 157 LLALAAALLWALYTALVKRLSRL---GPVTLALLLQLLLALLLLLLFFLSGFGAPILSRA 213

Query: 256 WDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYL 315
           W    L   Y G+ ++ ++Y +    ++  G       S L  +  A++G  +L E +  
Sbjct: 214 W----LLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSP 269

Query: 316 GSVLGAILIVVGLYSVLWGKHKE 338
             +LGA L+V+G+        + 
Sbjct: 270 AQLLGAALVVLGVLLASLRARRR 292

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 203 LAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLA 262
           L+WA  FV   K LE      L+ T+    +  +  I + F++    ++  +     +LA
Sbjct: 1   LSWALYFVFSKKLLERISP--LTFTAYRFLIAGILLILLLFLLRKPFALLSLKA---ILA 55

Query: 263 AAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAI 322
             Y G+  +++ Y +    +K      A+  + L  +   I+   +L E + L  +LG +
Sbjct: 56  LLYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLKQLLGIV 115

Query: 323 LIVVGLYSVLW 333
           LI++G+  +L 
Sbjct: 116 LILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 8/134 (5%)

Query: 25  FGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFV 84
             +A   + +K  L   +S      YR   A  ++     FL RK    ++ K  + +  
Sbjct: 1   LSWALYFVFSKKLL-ERISPLTFTAYRFLIAGILLI-LLLFLLRKPFALLSLKAILALLY 58

Query: 85  LALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVV 144
           L L G  +    Y+  LK+ S + +  ++++ P  T +++V+   EK+ +K      +++
Sbjct: 59  LGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKLTLK------QLL 112

Query: 145 GTAVTVAGAMIMTL 158
           G  + + G +++ L
Sbjct: 113 GIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 44/298 (14%), Positives = 105/298 (35%), Gaps = 45/298 (15%)

Query: 32  IITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFL-ERKAQPKITFKVFMQIFVLALLGP 90
           ++    L   +  Y  V  R  FA  ++ P        K   ++     +QI V  +L  
Sbjct: 6   VVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRRPPLKRLLRLLLLGALQIGVFYVL-- 63

Query: 91  VIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTV 150
                ++ A  +      +  +  + P    +++ +   E+     +      +   + +
Sbjct: 64  -----YFVAVKRLPVG-EAALLLYLAPLYVTLLSDLMGKERPRKLVL------LAAVLGL 111

Query: 151 AGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFV 210
           AG  ++ L  G +                              G +  + + +++A   V
Sbjct: 112 AG-AVLLLSDGNLSINPA-------------------------GLLLGLGSGISFALGTV 145

Query: 211 LQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVT 270
           L  + ++      L  T  +  +G L  +   + +   P    + W     A  Y G++ 
Sbjct: 146 LYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQW----GALLYLGLIG 201

Query: 271 SSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGL 328
           ++++YF+    +    P  A+  +    ++  ++G  IL E + L  ++G  LI+  +
Sbjct: 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK15430	296	putative chloramphenical resistance permease RarD;	99.98
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.98
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.98
PRK11689	295	aromatic amino acid exporter; Provisional	99.97
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.96
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.94
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.94
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.93
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.92
COG2962	293	RarD Predicted permeases [General function predict	99.9
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.88
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.88
KOG2765	416	consensus Predicted membrane protein [Function unk	99.88
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.81
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.75
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.73
KOG1580	337	consensus UDP-galactose transporter related protei	99.72
KOG2766	336	consensus Predicted membrane protein [Function unk	99.72
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.68
KOG1581	327	consensus UDP-galactose transporter related protei	99.66
COG2510	140	Predicted membrane protein [Function unknown]	99.63
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.62
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.58
COG2510	140	Predicted membrane protein [Function unknown]	99.56
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.55
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.5
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.39
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.34
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.32
KOG1582	367	consensus UDP-galactose transporter related protei	99.29
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.27
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.26
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.24
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.2
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	99.15
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.12
PRK13499	345	rhamnose-proton symporter; Provisional	99.1
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.09
PRK11272	292	putative DMT superfamily transporter inner membran	99.08
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.05
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.05
PRK15430	296	putative chloramphenical resistance permease RarD;	99.03
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.96
PRK11689	295	aromatic amino acid exporter; Provisional	98.96
PLN00411	358	nodulin MtN21 family protein; Provisional	98.93
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.83
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.82
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.75
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.74
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.68
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.64
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.62
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.62
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.61
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.52
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.51
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.37
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.34
COG2962	293	RarD Predicted permeases [General function predict	98.27
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.25
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.19
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.98
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.97
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.96
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	97.9
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.84
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.84
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.77
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.6
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.6
COG2076	106	EmrE Membrane transporters of cations and cationic	97.56
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.51
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.48
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.47
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.44
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.44
COG2076	106	EmrE Membrane transporters of cations and cationic	97.4
PRK11431	105	multidrug efflux system protein; Provisional	97.37
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.34
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.28
KOG2765	416	consensus Predicted membrane protein [Function unk	97.23
PRK11431	105	multidrug efflux system protein; Provisional	97.23
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	97.14
PRK13499	345	rhamnose-proton symporter; Provisional	97.11
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	97.0
KOG2922	335	consensus Uncharacterized conserved protein [Funct	96.93
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.87
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.83
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.82
KOG1581	327	consensus UDP-galactose transporter related protei	96.68
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.62
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	96.53
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.38
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	96.17
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.93
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	95.29
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.91
KOG1580	337	consensus UDP-galactose transporter related protei	93.38
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	93.32
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	92.43
KOG4831	125	consensus Unnamed protein [Function unknown]	92.16
KOG1443	349	consensus Predicted integral membrane protein [Fun	91.64
KOG1582	367	consensus UDP-galactose transporter related protei	91.39
PF03348	429	Serinc: Serine incorporator (Serinc); InterPro: IP	89.23
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	88.73
KOG3912	372	consensus Predicted integral membrane protein [Gen	88.11
PRK02237	109	hypothetical protein; Provisional	86.97
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	86.49
PF05297	381	Herpes_LMP1: Herpesvirus latent membrane protein 1	84.07
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	83.54
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	83.31
PF06570	206	DUF1129: Protein of unknown function (DUF1129); In	82.93
KOG4831	125	consensus Unnamed protein [Function unknown]	80.93

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=5.3e-37  Score=293.83  Aligned_cols=321  Identities=28%  Similarity=0.603  Sum_probs=251.3

Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCCHHHHHHHHHHHHH
Q 015299           10 FLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLER-KAQPKITFKVFMQIFVLALL   88 (409)
Q Consensus        10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~   88 (409)
                      +.|+.+.++.|+...+.++...++.|.+++.+++|..+.++|+.++.++++++++++++ +.+++.+++++..+.+.|++
T Consensus         8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~   87 (358)
T PLN00411          8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL   87 (358)
T ss_pred             hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            45577999999999999999999999999999999999999999999999999877554 33344568889999999999


Q ss_pred             HHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHh------hhhcccccccccchhhhHHHHHHHHHHHHHhcCC
Q 015299           89 GPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICR------MEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGP  162 (409)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l------~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~  162 (409)
                      + ++++.+++++++|++++.++++.++.|+++.+++++++      +||++++      +++|++++++|+.++...+++
T Consensus        88 g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~  160 (358)
T PLN00411         88 G-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGP  160 (358)
T ss_pred             H-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCc
Confidence            8 78888999999999999999999999999999999994      7777777      899999999999998854443


Q ss_pred             ccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHH
Q 015299          163 IVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVT  242 (409)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  242 (409)
                      .... ++++...+ .............+..+|++++++++++||+|++.+|+..+++ ++....+++++.++.+...+..
T Consensus       161 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~  237 (358)
T PLN00411        161 RVFV-ASSPPYLN-FRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY-PAAFTVSFLYTVCVSIVTSMIG  237 (358)
T ss_pred             cccc-cccccccc-ccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHhHHHHHHHHHHHHHHHHHH
Confidence            2100 00000000 0000000011223446799999999999999999999998887 3444666777777777666666


Q ss_pred             HHhcCC-CcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhH
Q 015299          243 FVIEHK-PSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGA  321 (409)
Q Consensus       243 ~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~  321 (409)
                      ...+.. ...|..........+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+
T Consensus       238 l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~  316 (358)
T PLN00411        238 LVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGG  316 (358)
T ss_pred             HHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            655432 233332223344567777775 568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhheeeecccccccc
Q 015299          322 ILIVVGLYSVLWGKHKEKME  341 (409)
Q Consensus       322 ~li~~g~~l~~~~~~~~~~~  341 (409)
                      ++|+.|+++..+.+++|.+.
T Consensus       317 ~LIl~Gv~l~~~~~~~~~~~  336 (358)
T PLN00411        317 ILITLGFYAVMWGKANEEKD  336 (358)
T ss_pred             HHHHHHHHHHHhhhhhhhhh
Confidence            99999999988766555433

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=3.7e-31  Score=249.39  Aligned_cols=280  Identities=14%  Similarity=0.194  Sum_probs=231.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 015299           15 KPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQ   94 (409)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   94 (409)
                      .-.+..+...++||.++++.|... ++++|.+++++|+.++.++++++...++++   ..+++++......|.++...++
T Consensus         8 ~~~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~   83 (292)
T PRK11272          8 PLFGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHP---LPTLRQWLNAALIGLLLLAVGN   83 (292)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHHHHHHHH
Confidence            445677888999999999999985 799999999999999999998887653322   2346788888888888767788


Q ss_pred             HHHHhhh-cccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCC
Q 015299           95 NFYYAGL-KFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAH  173 (409)
Q Consensus        95 ~~~~~al-~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~  173 (409)
                      .+++++. ++++++.++++.++.|+++.+++++ +|||++++      +++|++++++|+.++.. ++ .          
T Consensus        84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~-~~-~----------  144 (292)
T PRK11272         84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS-GG-N----------  144 (292)
T ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc-Cc-c----------
Confidence            8889999 9999999999999999999999986 69999999      79999999999988762 11 0          


Q ss_pred             CCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 015299          174 PHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQ  253 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  253 (409)
                                    .+....|++++++++++||.|.+..|+..++   ++...+.++..++++.+.+.....+....  .
T Consensus       145 --------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  205 (292)
T PRK11272        145 --------------LSGNPWGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLT--A  205 (292)
T ss_pred             --------------cccchHHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCccc--c
Confidence                          1123579999999999999999999986543   44556677778888877776653322111  1


Q ss_pred             cccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeee
Q 015299          254 IGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLW  333 (409)
Q Consensus       254 ~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~  333 (409)
                      ..+...|..+++.+++++.+++.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+++..+
T Consensus       206 ~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        206 LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            12334688899999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             ccc
Q 015299          334 GKH  336 (409)
Q Consensus       334 ~~~  336 (409)
                      .++
T Consensus       286 ~~~  288 (292)
T PRK11272        286 GKY  288 (292)
T ss_pred             HHh
Confidence            443

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=1.1e-30  Score=246.92  Aligned_cols=281  Identities=16%  Similarity=0.263  Sum_probs=216.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015299           16 PYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQN   95 (409)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (409)
                      ..++++++.++||.++++.|... ++++|..+.++|+.++++.++++..   +   ++.+++   .....|++.......
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~---~---~~~~~~---~~~~~g~~~~~~~~~   74 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVA---R---PKVPLN---LLLGYGLTISFGQFA   74 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhc---C---CCCchH---HHHHHHHHHHHHHHH
Confidence            34668899999999999999986 7899999999999998776665442   1   112222   344455555355666


Q ss_pred             HHHhhhcc-cCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCC
Q 015299           96 FYYAGLKF-TSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHP  174 (409)
Q Consensus        96 ~~~~al~~-~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~  174 (409)
                      +++.++++ .+++.++++.++.|+++.+++++++|||++++      ++++++++++|+.++.. + ..           
T Consensus        75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~-~~-----------  135 (299)
T PRK11453         75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-D-SL-----------  135 (299)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-c-cC-----------
Confidence            77889988 58899999999999999999999999999999      79999999999998872 1 00           


Q ss_pred             CCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhC-CCchhHHHHHHHHHHHHHHHHHHHhcCCC---c
Q 015299          175 HDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYK-NHQLSLTSLMCFVGTLQAIAVTFVIEHKP---S  250 (409)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~  250 (409)
                                 ........|++++++++++|++|.++.|+..++.+ +.......+.+..+.+.........+...   .
T Consensus       136 -----------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (299)
T PRK11453        136 -----------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIH  204 (299)
T ss_pred             -----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence                       01122357999999999999999999999876541 12223344444444443333333233221   1


Q ss_pred             ccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhhe
Q 015299          251 VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYS  330 (409)
Q Consensus       251 ~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l  330 (409)
                      .+...+...|..++++++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++|++|+++
T Consensus       205 ~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l  284 (299)
T PRK11453        205 SLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYI  284 (299)
T ss_pred             hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence            11122334688999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeeccc
Q 015299          331 VLWGKH  336 (409)
Q Consensus       331 ~~~~~~  336 (409)
                      ..+.++
T Consensus       285 ~~~~~~  290 (299)
T PRK11453        285 NVFGLR  290 (299)
T ss_pred             Hhcchh
Confidence            776654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.98  E-value=7.4e-31  Score=247.71  Aligned_cols=281  Identities=10%  Similarity=0.012  Sum_probs=209.1

Q ss_pred             cchhchHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC--CC-CCHHHHHHHHHH
Q 015299            9 NFLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ--PK-ITFKVFMQIFVL   85 (409)
Q Consensus         9 ~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~--~~-~~~~~~~~~~~~   85 (409)
                      +|+++.+|.++++++.++||.++++.|..  .+++|.+++++|+.++.+++.+++..+++...  .+ .+++.+.. ...
T Consensus         2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   78 (296)
T PRK15430          2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAV   78 (296)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHH
Confidence            46677899999999999999999999986  57999999999999999888877654322110  00 13344433 345


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccc
Q 015299           86 ALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVE  165 (409)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~  165 (409)
                      +.++.++++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|++++...++    
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~----  148 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG----  148 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC----
Confidence            66666889999999999999999999999999999999999999999999      79999999999999873110    


Q ss_pred             cccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHh
Q 015299          166 LFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVI  245 (409)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  245 (409)
                                            + .    ..++++++++||.|.+..|+..++...+....+.+...++.+...+.   .
T Consensus       149 ----------------------~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  198 (296)
T PRK15430        149 ----------------------S-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---A  198 (296)
T ss_pred             ----------------------C-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---c
Confidence                                  0 0    14688899999999999888643220112222333333333322211   1


Q ss_pred             cCCCcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHH
Q 015299          246 EHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIV  325 (409)
Q Consensus       246 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~  325 (409)
                      ......+...+...+..+++.++ .+.++|.++++++++.++++++++.+++|+++.+++++++||+|++.+++|+++|+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~  277 (296)
T PRK15430        199 DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIW  277 (296)
T ss_pred             cCCcccccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            11111111111112233344454 57799999999999999999999999999999999999999999999999999998


Q ss_pred             hhhheeee
Q 015299          326 VGLYSVLW  333 (409)
Q Consensus       326 ~g~~l~~~  333 (409)
                      +|+.++..
T Consensus       278 ~~~~v~~~  285 (296)
T PRK15430        278 VALAIFVM  285 (296)
T ss_pred             HHHHHHHH
Confidence            88766653

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.98  E-value=2e-30  Score=240.69  Aligned_cols=259  Identities=16%  Similarity=0.258  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 015299           27 YAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSP  106 (409)
Q Consensus        27 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~  106 (409)
                      ||.++++.|..++...++....+.|+..+.+++.++...+       .+++++.+....|.++.++++.++++|++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            8899999999876679999999999999988888765432       235677788888888889999999999999999


Q ss_pred             hhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCcCcCCCC
Q 015299          107 TFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTAS  186 (409)
Q Consensus       107 ~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                      ++++++.++.|+++.+++++++|||++++      +++|+.++++|++++.. ++                         
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~-------------------------  121 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG-------------------------  121 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC-------------------------
Confidence            99999999999999999999999999999      79999999999999862 21                         


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHH
Q 015299          187 SEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYA  266 (409)
Q Consensus       187 ~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  266 (409)
                      ..+....|++++++++++|+.+.+..|+..++.++++.....+.+.++.+.+.+.....+.. .  .. +...|..+++.
T Consensus       122 ~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~--~~-~~~~~~~~~~~  197 (260)
T TIGR00950       122 NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN-P--QA-LSLQWGALLYL  197 (260)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC-C--Cc-chHHHHHHHHH
Confidence            11234689999999999999999999998877722344555567888888888877643322 1  11 33467778889


Q ss_pred             HHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhh
Q 015299          267 GIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGL  328 (409)
Q Consensus       267 g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~  328 (409)
                      +++++.++|.++++++++.++.+++.+.+++|+++++++++++||+++..+++|+++++.|+
T Consensus       198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999986

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.98  E-value=2.4e-30  Score=243.89  Aligned_cols=276  Identities=11%  Similarity=0.059  Sum_probs=222.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVI   92 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (409)
                      +.+++++++++.++|+.++.+.|+++ ++++|.++.++|++++.++++++... ++   .+.++++++..+..|.+. +.
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~-~~---~~~~~~~~~~~~~~g~~~-~~   83 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKP-WR---LRFAKEQRLPLLFYGVSL-GG   83 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhH-Hh---ccCCHHHHHHHHHHHHHH-HH
Confidence            46899999999999999999999996 67999999999999999888876532 11   134567888888888886 88


Q ss_pred             HHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCC
Q 015299           93 DQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHA  172 (409)
Q Consensus        93 ~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~  172 (409)
                      .+.+++++++++|++.++++.++.|+++.+++.    |+..        +..++.++++|+.++.. .+.+         
T Consensus        84 ~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~-~~~~---------  141 (293)
T PRK10532         84 MNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLP-LGQD---------  141 (293)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeee-cCCC---------
Confidence            888999999999999999999999999998873    4433        24566788999988762 1111         


Q ss_pred             CCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 015299          173 HPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVW  252 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  252 (409)
                                    .......|++++++++++|+.|.+..|+..++.  ++... .+...++++.+.++....+.   ..
T Consensus       142 --------------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~---~~  201 (293)
T PRK10532        142 --------------VSHVDLTGAALALGAGACWAIYILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQAG---EA  201 (293)
T ss_pred             --------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHccC---cc
Confidence                          112235799999999999999999999987776  66655 45566677777766653221   11


Q ss_pred             ccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheee
Q 015299          253 QIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       253 ~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~  332 (409)
                      . .+...|..++++|++++.++|.++++++++.++++++++.+++|+++.+++++++||++++.+++|+++|++|++...
T Consensus       202 ~-~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        202 L-WHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            1 122345567899999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             ecccc
Q 015299          333 WGKHK  337 (409)
Q Consensus       333 ~~~~~  337 (409)
                      +..++
T Consensus       281 ~~~~~  285 (293)
T PRK10532        281 LTIRR  285 (293)
T ss_pred             hcCCC
Confidence            65443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.97  E-value=1.5e-30  Score=245.53  Aligned_cols=284  Identities=11%  Similarity=0.067  Sum_probs=214.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVI   92 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (409)
                      +.+++++++++.++||.+++..|... ++++|..+.++|+.++.++++++..   ++   +.+ +.+++..+.+.++.++
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~---~~---~~~-~~~~~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVG---FP---RLR-QFPKRYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHcc---cc---ccc-cccHHHHHHHhHHHHH
Confidence            45788999999999999999999995 8899999999999999988886531   11   111 1222334455555577


Q ss_pred             HHHHHHhhhcc----cCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCcccccc
Q 015299           93 DQNFYYAGLKF----TSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFW  168 (409)
Q Consensus        93 ~~~~~~~al~~----~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~  168 (409)
                      +..+++.++++    ++++.++++.++.|+++.+++++++|||++++      +++|++++++|++++.. +++..+.  
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~~--  144 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLSL--  144 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccchh--
Confidence            77777777754    57788899999999999999999999999999      79999999999999873 2110000  


Q ss_pred             ccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 015299          169 TQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHK  248 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  248 (409)
                                 .+  ...+......|++++++++++||+|.++.|+..++.  ++.....   ..+.+.+.+... .++.
T Consensus       145 -----------~~--~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~~~~---~~~~~~l~~~~~-~~~~  205 (295)
T PRK11689        145 -----------AE--LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGITLFF---ILTALALWIKYF-LSPQ  205 (295)
T ss_pred             -----------hh--hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--CchhHHH---HHHHHHHHHHHH-HhcC
Confidence                       00  000111235699999999999999999999987666  6654422   223333333233 2221


Q ss_pred             CcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhh
Q 015299          249 PSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGL  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~  328 (409)
                       ..... +...|..+++.++ +++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+
T Consensus       206 -~~~~~-~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv  282 (295)
T PRK11689        206 -PAMVF-SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGS  282 (295)
T ss_pred             -ccccC-CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhH
Confidence             11122 2236777777774 78999999999999999999999999999999999999999999999999999999998


Q ss_pred             heeeecc
Q 015299          329 YSVLWGK  335 (409)
Q Consensus       329 ~l~~~~~  335 (409)
                      ++..+..
T Consensus       283 ~~~~~~~  289 (295)
T PRK11689        283 LLCWLAT  289 (295)
T ss_pred             HHHhhhH
Confidence            8876544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=1.2e-29  Score=240.50  Aligned_cols=284  Identities=13%  Similarity=0.115  Sum_probs=222.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 015299           18 FAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFY   97 (409)
Q Consensus        18 l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   97 (409)
                      ++.+....+-....+..|.+++....|..++++|+.++.+.+.+... ...+.+++.+++++++++..|+++ +++..+.
T Consensus         5 ~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~   82 (302)
T TIGR00817         5 LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVH-TIGHVTS   82 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence            44555566666667789999844477999999999998877665521 122333456789999999999997 8999999


Q ss_pred             HhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCC
Q 015299           98 YAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDK  177 (409)
Q Consensus        98 ~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~  177 (409)
                      ++|+++++++.++++.++.|+++++++++++|||++++      ++++++++++|+.+... +                 
T Consensus        83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~~-~-----------------  138 (302)
T TIGR00817        83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALASD-T-----------------  138 (302)
T ss_pred             HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhcC-C-----------------
Confidence            99999999999999999999999999999999999999      79999999999987541 1                 


Q ss_pred             CCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcc---c
Q 015299          178 SDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALE--TYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV---W  252 (409)
Q Consensus       178 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~  252 (409)
                               +.+....|++++++++++|++|.+..|+..+  +.  ++...+.+++..+++.++|.....+.....   +
T Consensus       139 ---------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~  207 (302)
T TIGR00817       139 ---------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL--DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGF  207 (302)
T ss_pred             ---------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence                     1122367999999999999999999999887  55  999999999999999999988755431110   0


Q ss_pred             cc-----ccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhh
Q 015299          253 QI-----GWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVG  327 (409)
Q Consensus       253 ~~-----~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g  327 (409)
                      ..     .....+...+..+..+....+.+++.++++++|++.+++.+++|+++++++++++||+++..+++|+++++.|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~G  287 (302)
T TIGR00817       208 MQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAG  287 (302)
T ss_pred             HHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHH
Confidence            00     0011122122333323333345666899999999999999999999999999999999999999999999999


Q ss_pred             hheeeeccccc
Q 015299          328 LYSVLWGKHKE  338 (409)
Q Consensus       328 ~~l~~~~~~~~  338 (409)
                      ++++.+.|.++
T Consensus       288 v~l~~~~k~~~  298 (302)
T TIGR00817       288 VFLYSRVKAQK  298 (302)
T ss_pred             HHHHHHHhccC
Confidence            99998665433

specificities overlap.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.97  E-value=9.1e-28  Score=225.34  Aligned_cols=300  Identities=14%  Similarity=0.170  Sum_probs=238.6

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCCCHHHHHHHHHHHHHH
Q 015299           12 ETSKPYFAMISLQFGYAGMNIITKVSLNRGMS-HYVLVVYRHAFATAVIAPFAFFLERK-AQPKITFKVFMQIFVLALLG   89 (409)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~a~i~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~   89 (409)
                      +..+.+++.=..+++-..++..+..+.+++.+ |....++-++.-.++..++..+++++ .+.+..+++|+++++.+++-
T Consensus        10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D   89 (334)
T PF06027_consen   10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD   89 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH
Confidence            33455666666677778888888877545555 77777888877777777766664432 22333457788889999998


Q ss_pred             HHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccc
Q 015299           90 PVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWT  169 (409)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~  169 (409)
                       +.++.+.+.|++|++++.++++.++..+++++++++++|+|+++.      +++|++++++|++++...+...      
T Consensus        90 -v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~------  156 (334)
T PF06027_consen   90 -VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLS------  156 (334)
T ss_pred             -HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccc------
Confidence             899999999999999999999999999999999999999999999      7999999999999987533111      


Q ss_pred             cCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCC
Q 015299          170 QHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKP  249 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  249 (409)
                                  ++.+.+.++..+|++++++++++||+++++.++..|+.  +..+..++..+++.+++.+...++|.+.
T Consensus       157 ------------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~ile~~~  222 (334)
T PF06027_consen  157 ------------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA--PRVEFLGMLGLFGFIISGIQLAILERSG  222 (334)
T ss_pred             ------------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHheehhh
Confidence                        01112445678999999999999999999999999998  8899999999999999998888777642


Q ss_pred             c-ccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhh
Q 015299          250 S-VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGL  328 (409)
Q Consensus       250 ~-~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~  328 (409)
                      . ...+.+  .....+....++.++.|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|+
T Consensus       223 i~~~~w~~--~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~  300 (334)
T PF06027_consen  223 IESIHWTS--QVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGF  300 (334)
T ss_pred             hhccCCCh--hhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHh
Confidence            2 222222  2223333334466777888889999999999999999999999999999999999999999999999999


Q ss_pred             heeeeccccccc
Q 015299          329 YSVLWGKHKEKM  340 (409)
Q Consensus       329 ~l~~~~~~~~~~  340 (409)
                      ++++..++++++
T Consensus       301 vvy~~~~~~~~~  312 (334)
T PF06027_consen  301 VVYNLAESPEEE  312 (334)
T ss_pred             heEEccCCcccc
Confidence            999987655443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.96  E-value=4.4e-27  Score=220.51  Aligned_cols=275  Identities=12%  Similarity=0.153  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhh-hccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015299           17 YFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLE-RKAQPKITFKVFMQIFVLALLGPVIDQN   95 (409)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (409)
                      +++.++++++|+..++..|... +.-++  +.+++.....+++.|+...+. ++.++..+++ ++...+.+.++...++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHA-DKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPAT-FWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-CchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchh-hHHHHHHHHHHHHHHHH
Confidence            5778999999999999999663 44344  347777777778877776532 2233333334 44444555555589999


Q ss_pred             HHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCC
Q 015299           96 FYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPH  175 (409)
Q Consensus        96 ~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~  175 (409)
                      ++++++++.+++.++++.++.|+++.+++++++|||++++      +++|+.++++|+.++...+  .            
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~~--~------------  138 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLSR--F------------  138 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhccc--c------------
Confidence            9999999999999999999999999999999999999999      7999999999999887311  0            


Q ss_pred             CCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHH-HHHHHHhc-CCCcccc
Q 015299          176 DKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQA-IAVTFVIE-HKPSVWQ  253 (409)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~~  253 (409)
                                  ......|+.++++++++|++|.+..|+..++.  ++..........+.+.. .+...... .+...+.
T Consensus       139 ------------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (281)
T TIGR03340       139 ------------AQHRRKAYAWALAAALGTAIYSLSDKAAALGV--PAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMF  204 (281)
T ss_pred             ------------cccchhHHHHHHHHHHHHHHhhhhccccccch--hcccccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence                        01124688899999999999999988765444  33221111111222111 22222110 1111111


Q ss_pred             cccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhhe
Q 015299          254 IGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYS  330 (409)
Q Consensus       254 ~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l  330 (409)
                       .....++.+++.+.+++.++|.++++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|++|+++
T Consensus       205 -~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       205 -PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence             1222456677888888999999999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.96  E-value=6.6e-27  Score=225.12  Aligned_cols=285  Identities=12%  Similarity=0.119  Sum_probs=226.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CHHHHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNRGMS-HYVLVVYRHAFATAVIAPFAFFLERKAQPKI--TFKVFMQIFVLALLG   89 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~   89 (409)
                      +.+..++.+....+-.......|.++ +.++ |+.++++|++++++++..++... .+.+++.  .+++++.++..|+++
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~  124 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCH  124 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHH
Confidence            56777888888888888899999997 6689 99999999999988766554322 2222333  245788899999998


Q ss_pred             HHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccc
Q 015299           90 PVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWT  169 (409)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~  169 (409)
                      . ..+...+.|+++++++.++++.++.|+++++++++++|||++++      ++++++++++|+.+... +         
T Consensus       125 ~-~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~-~---------  187 (350)
T PTZ00343        125 L-FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV-K---------  187 (350)
T ss_pred             H-HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec-c---------
Confidence            4 44666779999999999999999999999999999999999999      79999999999999872 1         


Q ss_pred             cCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhC-----CCchhHHHHHHHHHHHHHHHHHHH
Q 015299          170 QHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYK-----NHQLSLTSLMCFVGTLQAIAVTFV  244 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~  244 (409)
                                       +.+....|++++++++++++++++..|+..++.+     .++.....++...+.++++|+...
T Consensus       188 -----------------~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~  250 (350)
T PTZ00343        188 -----------------ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLF  250 (350)
T ss_pred             -----------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                             1123468999999999999999999999887641     245556666788999999998775


Q ss_pred             hcCCC--cccc----cccchhHHHHHHHHHHHhHHHHHHHH----HHHhhcCceEeeechhhHHHHHHHHHHHHhccccc
Q 015299          245 IEHKP--SVWQ----IGWDMNLLAAAYAGIVTSSISYFVQG----LVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIY  314 (409)
Q Consensus       245 ~~~~~--~~~~----~~~~~~~~~l~~~g~~~~~~~~~l~~----~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~  314 (409)
                      .|...  ..+.    ......+..+++ .++.+++++++++    +++++++|.+.++..+++|+++++++++++||+++
T Consensus       251 ~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt  329 (350)
T PTZ00343        251 FEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVT  329 (350)
T ss_pred             HhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCc
Confidence            54321  1110    000112233344 3445678888888    49999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHhhhheeeec
Q 015299          315 LGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       315 ~~~~iG~~li~~g~~l~~~~  334 (409)
                      +.+++|++++++|++++++.
T Consensus       330 ~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        330 LLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             hHhHHHHHHHHHHHHHHhhc
Confidence            99999999999999998765

>TIGR00688 rarD rarD protein

Probab=99.94  E-value=2.8e-25  Score=205.59  Aligned_cols=248  Identities=11%  Similarity=0.063  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhc-----cCCCCCHHH-HHHHHHHHHH
Q 015299           15 KPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERK-----AQPKITFKV-FMQIFVLALL   88 (409)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~-----~~~~~~~~~-~~~~~~~g~~   88 (409)
                      +|+++++++.++||.++++.|..  .+++|.+++++|++++++++.++...++++     ..++.++++ +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            58999999999999999999995  469999999999999998887766443221     111122233 4456667777


Q ss_pred             HHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCcccccc
Q 015299           89 GPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFW  168 (409)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~  168 (409)
                      . ++++.++++|++++++++++++.++.|+++++++++++|||++++      ++++++++++|++++...++       
T Consensus        80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~-------  145 (256)
T TIGR00688        80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG-------  145 (256)
T ss_pred             H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC-------
Confidence            5 899999999999999999999999999999999999999999999      79999999999998863110       


Q ss_pred             ccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 015299          169 TQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHK  248 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  248 (409)
                                        +  .    ..++++++++|+.|.+..|+..++   +....... .........+... ....
T Consensus       146 ------------------~--~----~~~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~-~~~~  196 (256)
T TIGR00688       146 ------------------S--L----PWEALVLAFSFTAYGLIRKALKNT---DLAGFCLE-TLSLMPVAIYYLL-QTDF  196 (256)
T ss_pred             ------------------C--c----hHHHHHHHHHHHHHHHHHhhcCCC---CcchHHHH-HHHHHHHHHHHHH-Hhcc
Confidence                              0  0    135788999999999999886543   32222211 1111112221111 1111


Q ss_pred             CcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHH
Q 015299          249 PSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFI  308 (409)
Q Consensus       249 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~  308 (409)
                      .......+...|..+++.|++ +.++|.++++++++.++++++++.|++|+++.++++++
T Consensus       197 ~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       197 ATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             CcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            111111222367778888876 78999999999999999999999999999999999865

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.94  E-value=8e-29  Score=216.16  Aligned_cols=294  Identities=13%  Similarity=0.105  Sum_probs=232.0

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 015299           12 ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPV   91 (409)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   91 (409)
                      +..+|+++...+.++...+.+..|..   +.+|.+..-.|+++-.++..|...+.+.....  +...+.+++++|+.| +
T Consensus        35 ~p~~gl~l~~vs~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v~g--p~g~R~~LiLRg~mG-~  108 (346)
T KOG4510|consen   35 KPNLGLLLLTVSYFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPVIG--PEGKRKWLILRGFMG-F  108 (346)
T ss_pred             CCccCceehhhHHHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeeeec--CCCcEEEEEeehhhh-h
Confidence            55678888888866555565555555   58899999999888887777766553332211  234456678999998 7


Q ss_pred             HHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccC
Q 015299           92 IDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQH  171 (409)
Q Consensus        92 ~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~  171 (409)
                      .+..+.|||++|++.+++++|.+++|+||.+++|.++|||+++.      ..++..+.+.||++++   .|++-+..+..
T Consensus       109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv---RPpFlFG~~t~  179 (346)
T KOG4510|consen  109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV---RPPFLFGDTTE  179 (346)
T ss_pred             hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe---cCCcccCCCcc
Confidence            77778888999999999999999999999999999999999999      5999999999999998   34433221111


Q ss_pred             CCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 015299          172 AHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV  251 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  251 (409)
                                +.+.+.......|...++.++++-|...++.|++.|+.  |....+.|...++.+..++.....+    .
T Consensus       180 ----------g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~--h~~msvsyf~~i~lV~s~I~~~~ig----~  243 (346)
T KOG4510|consen  180 ----------GEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA--HAIMSVSYFSLITLVVSLIGCASIG----A  243 (346)
T ss_pred             ----------ccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc--cEEEEehHHHHHHHHHHHHHHhhcc----c
Confidence                      11112234456788999999999999999999998988  9888888988888888877665333    2


Q ss_pred             ccccc-chhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhhe
Q 015299          252 WQIGW-DMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYS  330 (409)
Q Consensus       252 ~~~~~-~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l  330 (409)
                      +.++. ..+|+.++.+|++ +++++++.+.++|+..+..+++..+.+.+++.++++++|+|.||++.|.|+++|+.+.+.
T Consensus       244 ~~lP~cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~  322 (346)
T KOG4510|consen  244 VQLPHCGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVW  322 (346)
T ss_pred             eecCccccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHH
Confidence            33332 2367777888986 589999999999999999999999999999999999999999999999999999998887


Q ss_pred             eeecccc
Q 015299          331 VLWGKHK  337 (409)
Q Consensus       331 ~~~~~~~  337 (409)
                      ....|..
T Consensus       323 ~a~~kwa  329 (346)
T KOG4510|consen  323 VALKKWA  329 (346)
T ss_pred             HHHHHHh
Confidence            7655443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.93  E-value=3.7e-23  Score=194.56  Aligned_cols=282  Identities=20%  Similarity=0.320  Sum_probs=217.0

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHH
Q 015299           12 ETSKPYFAMISLQFGYAGMNIITKVSLNRG-MSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGP   90 (409)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   90 (409)
                      +...+....++..+.|+.+....|... ++ .++....+.|...+.+...+.........++.  .+.+.+..+.+.++.
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   80 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAV-ESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPA--LRPWLLLLLLALLGL   80 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCChHHHHHHHHHHHHHHHHHHHHhhccccccc--ccchHHHHHHHHHHH
Confidence            456788888888999999999999995 54 67777777799998888444332211111111  122455666666666


Q ss_pred             HHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHH-HHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccc
Q 015299           91 VIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAV-ICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWT  169 (409)
Q Consensus        91 ~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~-l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~  169 (409)
                      ..+..+++.++++++++.++++.++.|+++.++++ ++++||++++      ++.++.+.++|++++...++..      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~~------  148 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGGG------  148 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCcc------
Confidence            99999999999999999999999999999999997 6679999999      6999999999999998322110      


Q ss_pred             cCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHH-HHHHHHHHHHHHHHHHhcCC
Q 015299          170 QHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTS-LMCFVGTLQAIAVTFVIEHK  248 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~  248 (409)
                                       ... ...|+.++++++++++++.+..|+.. +.  ++..... +..........+...  .. 
T Consensus       149 -----------------~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~--~~-  204 (292)
T COG0697         149 -----------------GIL-SLLGLLLALAAALLWALYTALVKRLS-RL--GPVTLALLLQLLLALLLLLLFFL--SG-  204 (292)
T ss_pred             -----------------hhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHHHHHHHHHHHHHh--cc-
Confidence                             001 57999999999999999999999987 54  5555555 333311112222221  11 


Q ss_pred             CcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhh
Q 015299          249 PSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGL  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~  328 (409)
                      ..  .......+..+.+.|++++.+++.++++++++.++..++.+.+++|+++.++++++++|+++..+++|+++++.|+
T Consensus       205 ~~--~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~  282 (292)
T COG0697         205 FG--APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGV  282 (292)
T ss_pred             cc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence            11  1122236788888999888899999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeec
Q 015299          329 YSVLWG  334 (409)
Q Consensus       329 ~l~~~~  334 (409)
                      .+....
T Consensus       283 ~l~~~~  288 (292)
T COG0697         283 LLASLR  288 (292)
T ss_pred             HHHhcc
Confidence            888765

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.92  E-value=4.1e-23  Score=179.54  Aligned_cols=275  Identities=13%  Similarity=0.090  Sum_probs=229.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015299           16 PYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQN   95 (409)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (409)
                      +++.++.+.+..=....+.|.++ ..+++...+.+|..++.++++++.+-.+    .++++++|+.+...|+.- ...|.
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~RPwr----~r~~~~~~~~~~~yGvsL-g~MNl   86 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFRPWR----RRLSKPQRLALLAYGVSL-GGMNL   86 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhhHHH----hccChhhhHHHHHHHHHH-HHHHH
Confidence            57777777777777788889997 8899999999999999999988764322    356788999999999997 89999


Q ss_pred             HHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCC
Q 015299           96 FYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPH  175 (409)
Q Consensus        96 ~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~  175 (409)
                      +||.+++.+|.+.+..+.++.|+...+++.--.+            +.+.+.+++.|+.++.- .+.             
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~sRr~~------------d~vwvaLAvlGi~lL~p-~~~-------------  140 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSSRRLR------------DFVWVALAVLGIWLLLP-LGQ-------------  140 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhccchh------------hHHHHHHHHHHHHhhee-ccC-------------
Confidence            9999999999999999999999988877654443            48888889999999872 211             


Q ss_pred             CCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Q 015299          176 DKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIG  255 (409)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  255 (409)
                                .....+..|..+++.++.+|++|.+..+|..+..  +...-+..-+.++.++.+|+......  ..  +.
T Consensus       141 ----------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm~vAaviv~Pig~~~ag--~~--l~  204 (292)
T COG5006         141 ----------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGMLVAALIVLPIGAAQAG--PA--LF  204 (292)
T ss_pred             ----------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHHHHHHHHHhhhhhhhcc--hh--hc
Confidence                      1344568999999999999999999999988755  77788888899999999999873322  11  11


Q ss_pred             cchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecc
Q 015299          256 WDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGK  335 (409)
Q Consensus       256 ~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~  335 (409)
                      .+.-...-+..+++++.+.|.+-..++++.++.+.+++..++|.++.+.|++++||.+|+.||+|++.|+.+..-..+..
T Consensus       205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~  284 (292)
T COG5006         205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA  284 (292)
T ss_pred             ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence            22244556678899999999999999999999999999999999999999999999999999999999999988776655


Q ss_pred             ccc
Q 015299          336 HKE  338 (409)
Q Consensus       336 ~~~  338 (409)
                      +|+
T Consensus       285 ~~~  287 (292)
T COG5006         285 RKP  287 (292)
T ss_pred             CCC
Confidence            444

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.90  E-value=9.5e-22  Score=175.84  Aligned_cols=280  Identities=11%  Similarity=0.104  Sum_probs=224.4

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhcc-CC--CCCHHHHHHHHHHHHH
Q 015299           12 ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKA-QP--KITFKVFMQIFVLALL   88 (409)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~-~~--~~~~~~~~~~~~~g~~   88 (409)
                      +..+|+++.+.+.++||......|.+  +..++.++...|.+-+.++++.+....++.. ..  ..+++.+..+.+.++.
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence            45689999999999999999999999  6899999999999999988877765543321 11  1244666667777776


Q ss_pred             HHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCcccccc
Q 015299           89 GPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFW  168 (409)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~  168 (409)
                      - ..++..|.||.....+-+++.=++..|++.++++++++|||+++.      |++++.++.+||....+..|..     
T Consensus        82 i-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~l-----  149 (293)
T COG2962          82 I-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGSL-----  149 (293)
T ss_pred             H-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCCC-----
Confidence            5 999999999999999999999999999999999999999999999      8999999999999998644321     


Q ss_pred             ccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 015299          169 TQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHK  248 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  248 (409)
                                                -..++.-+++|+.|...-|+. +   .++.+-...-+..-....+...+..+..
T Consensus       150 --------------------------pwval~la~sf~~Ygl~RK~~-~---v~a~~g~~lE~l~l~p~al~yl~~l~~~  199 (293)
T COG2962         150 --------------------------PWVALALALSFGLYGLLRKKL-K---VDALTGLTLETLLLLPVALIYLLFLADS  199 (293)
T ss_pred             --------------------------cHHHHHHHHHHHHHHHHHHhc-C---CchHHhHHHHHHHHhHHHHHHHHHHhcC
Confidence                                      145667788999999885443 2   2666665655555555555555544443


Q ss_pred             CcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhh
Q 015299          249 PSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGL  328 (409)
Q Consensus       249 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~  328 (409)
                      ...........+..++..|++ +++...++..+-++.+-++.+.++|.+|..-.+++++++||+++..+++..+.|-+|.
T Consensus       200 ~~~~~~~~~~~~~LLv~aG~v-TavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL  278 (293)
T COG2962         200 GQFLQQNANSLWLLLVLAGLV-TAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLAL  278 (293)
T ss_pred             chhhhcCCchHHHHHHHhhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            321121333456777777875 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeeccc
Q 015299          329 YSVLWGKH  336 (409)
Q Consensus       329 ~l~~~~~~  336 (409)
                      +++.+..-
T Consensus       279 ~l~~~d~l  286 (293)
T COG2962         279 ALFSIDGL  286 (293)
T ss_pred             HHHHHHHH
Confidence            98876543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.88  E-value=1.5e-20  Score=178.10  Aligned_cols=281  Identities=17%  Similarity=0.191  Sum_probs=218.2

Q ss_pred             HHHHHHHhh-hCCCC--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 015299           30 MNIITKVSL-NRGMS--HYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSP  106 (409)
Q Consensus        30 ~~~~~k~~~-~~~~~--~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~  106 (409)
                      ..++..... .+...  |..+++.++....++..+.....+++   +.++..++.++..+++. .++..+.+.|++|++.
T Consensus        15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~   90 (303)
T PF08449_consen   15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLF-FLASVLSNAALKYISY   90 (303)
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCCh
Confidence            334444443 23344  88899999988888777766554422   22334566677778887 8888999999999999


Q ss_pred             hhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCcCcCCCC
Q 015299          107 TFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTAS  186 (409)
Q Consensus       107 ~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                      +...++.+..|+++++++.+++|+|++++      +++++++..+|+++....+...                 ++..+.
T Consensus        91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~-----------------~~~~~~  147 (303)
T PF08449_consen   91 PTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSS-----------------SSSSNS  147 (303)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccc-----------------cccccc
Confidence            99999999999999999999999999999      7999999999999998533211                 001111


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhc--CCCcc--cccccchhHHH
Q 015299          187 SEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIE--HKPSV--WQIGWDMNLLA  262 (409)
Q Consensus       187 ~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~~~~~~~~~~~  262 (409)
                      .......|+++.+++.++.|...+.+++..++++.++.+.+++.+.++.+..++....+.  .....  +....+..+..
T Consensus       148 ~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~  227 (303)
T PF08449_consen  148 SSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLY  227 (303)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHH
Confidence            222234499999999999999999999999999889999999999999999888887522  21111  11122223444


Q ss_pred             HHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeeccccc
Q 015299          263 AAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKE  338 (409)
Q Consensus       263 l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~~  338 (409)
                      ++...+ ++.+++...+...++.+|...+++..++.+++++++++++|+++++.+|+|.++++.|..++.+.|+|+
T Consensus       228 l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  228 LLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            444444 567888888899999999999999999999999999999999999999999999999999998877655

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.88  E-value=5.5e-21  Score=179.40  Aligned_cols=277  Identities=14%  Similarity=0.129  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015299           16 PYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQN   95 (409)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (409)
                      ++++.++++++||...+..|.. . +.++.++.  |..++.+++..+....+.+.  ...++.+..-++.|++ .+.++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~-~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~   74 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKI-G-GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI   74 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhcc-C-CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence            5789999999999999999998 3 78887775  77777777666655433211  1123444444444444 588999


Q ss_pred             HHHhhhcccCchhhhhhcc-hhHHHHHHHHHHHhhhhcccccccccch----hhhHHHHHHHHHHHHHhcCCcccccccc
Q 015299           96 FYYAGLKFTSPTFSCAMSN-MLPAMTFVMAVICRMEKINMKKVRCQAK----VVGTAVTVAGAMIMTLYKGPIVELFWTQ  170 (409)
Q Consensus        96 ~~~~al~~~~~~~~~ii~~-~~pi~~~lls~l~l~e~~~~~~~~~~~~----~~~~~i~~~Gv~li~~~~~~~~~~~~~~  170 (409)
                      +++.+.++++++.+..+.+ +.+++..+++.+++|||.+++      +    ++|+++.++|++++...++..       
T Consensus        75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~-------  141 (290)
T TIGR00776        75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS-------  141 (290)
T ss_pred             hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc-------
Confidence            9999999999999999988 899999999999999999988      7    889999999988875321100       


Q ss_pred             CCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCc
Q 015299          171 HAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPS  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  250 (409)
                              .    +.....+...|++++++++++|+.|.+..|+.  ++  +|...++.+.....+....+...+... .
T Consensus       142 --------~----~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~-~  204 (290)
T TIGR00776       142 --------A----GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV--DGLSVLLPQAIGMVIGGIIFNLGHILA-K  204 (290)
T ss_pred             --------c----ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC--CcceehhHHHHHHHHHHHHHHHHHhcc-c
Confidence                    0    00000234679999999999999999999875  35  777775555542222222221211111 1


Q ss_pred             ccccccchhHHHHHHHHHHHhHHHHHHHHHHHh-hcCceEeeechhhHHHHHHHHHHHHhccccchhhh----hhHHHHH
Q 015299          251 VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIK-KRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSV----LGAILIV  325 (409)
Q Consensus       251 ~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~-~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~----iG~~li~  325 (409)
                      ++  ... .++..+..|++ ..+++.+|..+.+ +.++++.+++.+++|+.+.+++++++||..+..++    +|+++|+
T Consensus       205 ~~--~~~-~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi  280 (290)
T TIGR00776       205 PL--KKY-AILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILII  280 (290)
T ss_pred             ch--HHH-HHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHH
Confidence            11  122 33333447887 6899999999999 99999999999999999999999999999999999    9999999


Q ss_pred             hhhheeee
Q 015299          326 VGLYSVLW  333 (409)
Q Consensus       326 ~g~~l~~~  333 (409)
                      .|+.+...
T Consensus       281 ~~~~l~~~  288 (290)
T TIGR00776       281 IAANILGI  288 (290)
T ss_pred             HHHHHHhc
Confidence            99887644

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.88  E-value=1.6e-21  Score=178.80  Aligned_cols=304  Identities=13%  Similarity=0.200  Sum_probs=232.9

Q ss_pred             cchhchHHHHHHHHHHHHHHHHHHHHHHhhhCCC--ChHHHHHHHHHHHHHHHHHHH------HHhhhc-c-------C-
Q 015299            9 NFLETSKPYFAMISLQFGYAGMNIITKVSLNRGM--SHYVLVVYRHAFATAVIAPFA------FFLERK-A-------Q-   71 (409)
Q Consensus         9 ~~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~--~~~~~~~~r~~~a~i~l~~~~------~~~~~~-~-------~-   71 (409)
                      ..++...|+.++++..++|-.+.-+++..++++-  .|+..++..-..-.+.+.++.      +...++ .       . 
T Consensus         8 ~~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e   87 (416)
T KOG2765|consen    8 KRWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEE   87 (416)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhh
Confidence            3456789999999999999999999999984433  477766655433333333322      111000 0       0 


Q ss_pred             ------------------------------C---------------------CCCHH------------HHHH-HHHHHH
Q 015299           72 ------------------------------P---------------------KITFK------------VFMQ-IFVLAL   87 (409)
Q Consensus        72 ------------------------------~---------------------~~~~~------------~~~~-~~~~g~   87 (409)
                                                    +                     +.+.|            +..+ .+....
T Consensus        88 ~d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~  167 (416)
T KOG2765|consen   88 ADAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCP  167 (416)
T ss_pred             hhhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHH
Confidence                                          0                     00111            3333 334444


Q ss_pred             HHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccc
Q 015299           88 LGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELF  167 (409)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~  167 (409)
                      + .++.++.++.|+.+++++..+++.+++.+||..++.++..||+++.      |.+++++++.|++++...+...    
T Consensus       168 l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~----  236 (416)
T KOG2765|consen  168 L-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQ----  236 (416)
T ss_pred             H-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEeccccc----
Confidence            4 5889999999999999999999999999999999999999999999      7999999999999998533111    


Q ss_pred             cccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--CCCchhHHHHHHHHHHHHHHHHHHHh
Q 015299          168 WTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETY--KNHQLSLTSLMCFVGTLQAIAVTFVI  245 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~  245 (409)
                                     ..+....+..+|+++++++|+.||+|.++.|+-..+.  +.+--.+.++..++..+++.|..++.
T Consensus       237 ---------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL  301 (416)
T KOG2765|consen  237 ---------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL  301 (416)
T ss_pred             ---------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence                           1122345668999999999999999999999887666  23555556667777777777666654


Q ss_pred             cC-CCcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHH
Q 015299          246 EH-KPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILI  324 (409)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li  324 (409)
                      +. ..+.+..+...+...++..++++++++-++|.+|.-.++|.++++.+.++++.+++.+.++-+..+++.+++|.+.|
T Consensus       302 ~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~I  381 (416)
T KOG2765|consen  302 DFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPI  381 (416)
T ss_pred             HHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            43 34456666666677778888899999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhheeeeccccc
Q 015299          325 VVGLYSVLWGKHKE  338 (409)
Q Consensus       325 ~~g~~l~~~~~~~~  338 (409)
                      ++|.+.+++.....
T Consensus       382 fv~Fv~vn~~~~~~  395 (416)
T KOG2765|consen  382 FVGFVIVNISSENS  395 (416)
T ss_pred             HHHHhheecccccc
Confidence            99999998765443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.81  E-value=3.6e-20  Score=171.85  Aligned_cols=289  Identities=15%  Similarity=0.139  Sum_probs=229.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh--CCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 015299           16 PYFAMISLQFGYAGMNIITKVSLN--RGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVID   93 (409)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   93 (409)
                      ..++.....++-.......|+.++  +.--|..++..+..++.+..+........+..+..++..+..++.+|++. +++
T Consensus        18 ~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~   96 (316)
T KOG1441|consen   18 IGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CIS   96 (316)
T ss_pred             HHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHH
Confidence            334444455555555666888875  44567888888777777777766655444443333557788899999998 999


Q ss_pred             HHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCC
Q 015299           94 QNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAH  173 (409)
Q Consensus        94 ~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~  173 (409)
                      ..+-+.|+.+.+++.++.+..+.|++++++++++.+|+.+..      .+..+.....||.+... .             
T Consensus        97 ~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~-~-------------  156 (316)
T KOG1441|consen   97 HVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV-T-------------  156 (316)
T ss_pred             HHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee-c-------------
Confidence            999999999999999999999999999999999999999999      58899999999998873 1             


Q ss_pred             CCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhCCCchhHHHHHHHHHHHHHH-HHHHHhcCCCc
Q 015299          174 PHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALE--TYKNHQLSLTSLMCFVGTLQAI-AVTFVIEHKPS  250 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~  250 (409)
                                   +...++.|...++++.+..+..+++.++..+  +.+.|++.+..++..++.+.++ |+....+++..
T Consensus       157 -------------e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~  223 (316)
T KOG1441|consen  157 -------------ELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF  223 (316)
T ss_pred             -------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce
Confidence                         2334589999999999999999999999994  4446999999999999999999 88775555332


Q ss_pred             ---ccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhh
Q 015299          251 ---VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVG  327 (409)
Q Consensus       251 ---~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g  327 (409)
                         .. ..+......+++.. ++..+.+...+..+.+++|.+.++.+.++-++.++.++++|+++.++.+.+|+++.++|
T Consensus       224 ~~~~~-~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~G  301 (316)
T KOG1441|consen  224 VGFLT-APWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILG  301 (316)
T ss_pred             eeeec-cccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHH
Confidence               11 01111233333333 45566677778899999999999999999999999999999999999999999999999


Q ss_pred             hheeeeccccccc
Q 015299          328 LYSVLWGKHKEKM  340 (409)
Q Consensus       328 ~~l~~~~~~~~~~  340 (409)
                      +++|.+.|.++++
T Consensus       302 v~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  302 VFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHHHHhhhhhc
Confidence            9999988776654

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.75  E-value=3.2e-16  Score=140.38  Aligned_cols=253  Identities=11%  Similarity=0.142  Sum_probs=194.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCCHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHH
Q 015299           44 HYVLVVYRHAFATAVIAPFAFFLERKA---QPKITFKVFMQIF-VLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAM  119 (409)
Q Consensus        44 ~~~~~~~r~~~a~i~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~  119 (409)
                      |..++.+++++-+++........+++.   +-..+|++..+.+ ..++++ ++...+.++|++|++++.+++..+.+++|
T Consensus        45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHHHH
Confidence            677778888777776666554444332   2346788776544 555555 99999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHH
Q 015299          120 TFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLI  199 (409)
Q Consensus       120 ~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l  199 (409)
                      +.+++.++.-||+++.      -..-+.+..+|+.+++. +                          +.+....|.++.+
T Consensus       124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft~-K--------------------------sTqf~i~Gf~lv~  170 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY-K--------------------------STQFNIEGFFLVL  170 (349)
T ss_pred             HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe-c--------------------------ccceeehhHHHHH
Confidence            9999999999999988      45556666667776662 3                          2234578999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhC---CCchhHHHHHHHHHHHHHHHHHHHhcCCCcc-----cccccch-hHHHHHHHHHHH
Q 015299          200 IATLAWASLFVLQTKALETYK---NHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV-----WQIGWDM-NLLAAAYAGIVT  270 (409)
Q Consensus       200 ~aa~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~-~~~~l~~~g~~~  270 (409)
                      +++++.++-....++++++.+   .+|....+.......+.++|..+.+|+....     +...+.. .+..+..+++ +
T Consensus       171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~  249 (349)
T KOG1443|consen  171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-G  249 (349)
T ss_pred             HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-H
Confidence            999999999999999888763   4899999999999999999999988874322     2222221 2222222222 3


Q ss_pred             hHHHHHH---HHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhhee
Q 015299          271 SSISYFV---QGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSV  331 (409)
Q Consensus       271 ~~~~~~l---~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~  331 (409)
                      +.+++.+   -+..+.+++..+.++.+..+-+.+.+++..+.+|.++...|+|.++...|+.++
T Consensus       250 g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  250 GLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            3344433   345678999999999999999999999999999999999999999999999887

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.73  E-value=7.9e-15  Score=135.35  Aligned_cols=300  Identities=14%  Similarity=0.155  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCC---CChHHHHHHHHHHHHHHHHHHHHHhhhc----cCCC------CCHHHHHH
Q 015299           15 KPYFAMISLQFGYAGMNIITKVSLNRG---MSHYVLVVYRHAFATAVIAPFAFFLERK----AQPK------ITFKVFMQ   81 (409)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~---~~~~~~~~~r~~~a~i~l~~~~~~~~~~----~~~~------~~~~~~~~   81 (409)
                      .-++.++...+.++......|+.-..+   +.|...++.--++-.+++....+...++    ....      ..+++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            556777777888999999999985344   6788888888888888777777665322    1111      24556777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcC
Q 015299           82 IFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKG  161 (409)
Q Consensus        82 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~  161 (409)
                      +.+.+++- ++.|.++|.++.+.+++..++..++..+.|++++.+++++|++++      ||.++++.++|+.++-....
T Consensus        95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~  167 (345)
T KOG2234|consen   95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSL  167 (345)
T ss_pred             HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCC
Confidence            88888886 888889999999999999999999999999999999999999999      89999999999999973221


Q ss_pred             CccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHH
Q 015299          162 PIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAV  241 (409)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  241 (409)
                      ++                .++.......+...|....+.+++..+...++.+|++|+.+.+.+..+....++|.++.+..
T Consensus       168 ~~----------------~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~  231 (345)
T KOG2234|consen  168 SP----------------TGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLT  231 (345)
T ss_pred             CC----------------CCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence            11                11111234567789999999999999999999999999875566666677777777777766


Q ss_pred             HHHhcCCCcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhH
Q 015299          242 TFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGA  321 (409)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~  321 (409)
                      .+..+.+...|.-. -..|-...+.-++..+++-.+....+|+.+-..=+....+..+++.+.++.++|-.||....+|+
T Consensus       232 ~~~~d~~~i~~~gf-f~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~  310 (345)
T KOG2234|consen  232 ILLQDGEAINEYGF-FYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGA  310 (345)
T ss_pred             HhhccccccccCCc-cccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence            65433321111100 01122222223333344445555566777776667777789999999999999999999999999


Q ss_pred             HHHHhhhheeeeccccc
Q 015299          322 ILIVVGLYSVLWGKHKE  338 (409)
Q Consensus       322 ~li~~g~~l~~~~~~~~  338 (409)
                      .+++.++.+|...++++
T Consensus       311 ~lVi~Si~lY~~~P~~~  327 (345)
T KOG2234|consen  311 LLVILSIFLYSLYPARD  327 (345)
T ss_pred             HHHHHHHHHhhcCCccc
Confidence            99999999998554443

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.72  E-value=3.5e-16  Score=134.81  Aligned_cols=256  Identities=11%  Similarity=0.118  Sum_probs=198.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHH
Q 015299           45 YVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMA  124 (409)
Q Consensus        45 ~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls  124 (409)
                      ..++|+++.+-.++--.+..++++   .+.+...-+.+..+++- +.+.....+.|+++.|-....+-.+..|+-+++++
T Consensus        54 laLVf~qC~~N~vfAkvl~~ir~~---~~~D~t~~~~YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilG  129 (337)
T KOG1580|consen   54 LALVFFQCTANTVFAKVLFLIRKK---TEIDNTPTKMYAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILG  129 (337)
T ss_pred             HHHHHHHHHHHHHHHHhheeeccc---ccccCCcchHHHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeee
Confidence            344555665555554443333221   22333333445555554 37778888999999999999999999999999999


Q ss_pred             HHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHH
Q 015299          125 VICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLA  204 (409)
Q Consensus       125 ~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~  204 (409)
                      .++.+++.+|+      +..+++..++||++.....+..                    ....+.....|.++.+++-..
T Consensus       130 Vl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv--------------------~g~e~~t~g~GElLL~lSL~m  183 (337)
T KOG1580|consen  130 VLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKV--------------------GGAEDKTFGFGELLLILSLAM  183 (337)
T ss_pred             hhhhcccccHH------HHHHHHHHHHHHHHhhcccccc--------------------CCCcccccchHHHHHHHHHHh
Confidence            99999999999      7999999999999998432221                    223445668999999999999


Q ss_pred             HHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCC---CcccccccchhHHHHHHHHHHHhHHHHHHHHHH
Q 015299          205 WASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHK---PSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLV  281 (409)
Q Consensus       205 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~a  281 (409)
                      -++....+.++.+.+......+++++++.+.+.+....+ +.++   +..+....+..|+-+..+++ ++++++++.+..
T Consensus       184 DGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~l-fTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~t  261 (337)
T KOG1580|consen  184 DGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLL-FTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKT  261 (337)
T ss_pred             cccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhhe-ehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHH
Confidence            999999999987777557778889999999988877665 3332   11222233446777777787 688999999999


Q ss_pred             HhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheee
Q 015299          282 IKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       282 l~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~  332 (409)
                      +...+|.+-+++..+.-+|+++.++++|+++++..||+|.++++.+...-.
T Consensus       262 v~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  262 VEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence            999999999999999999999999999999999999999999999976644

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.72  E-value=5.3e-18  Score=147.75  Aligned_cols=253  Identities=14%  Similarity=0.168  Sum_probs=202.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHH
Q 015299           43 SHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFV  122 (409)
Q Consensus        43 ~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~l  122 (409)
                      .|...+|+.+..-+++..+++.+++ +    .-...|..+++++++. +-++.+...|.||++....+.+-+...+.+.+
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR~-~----~~~~~~~hYilla~~D-VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~  120 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFRR-K----YIKAKWRHYILLAFVD-VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLV  120 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhhh-H----HHHHHHHHhhheeEEe-ecccEEEeeehhhcchHHHHHHHHhhhHHHHH
Confidence            4788899999999999999988744 2    2234566688899988 77888889999999999999999999999999


Q ss_pred             HHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHH
Q 015299          123 MAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIAT  202 (409)
Q Consensus       123 ls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa  202 (409)
                      ++|++++.|.++.      ++.|+++|++|++++++.+  .       |.          -++.++.+..+|+++.++++
T Consensus       121 lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD--V-------~a----------gd~aggsnp~~GD~lvi~GA  175 (336)
T KOG2766|consen  121 LSWFFLKTRYRLM------KISGVVICIVGVVMVVFSD--V-------HA----------GDRAGGSNPVKGDFLVIAGA  175 (336)
T ss_pred             HHHHHHHHHHhhh------eeeeEEeEecceEEEEEee--e-------cc----------ccccCCCCCccCcEEEEecc
Confidence            9999999999999      7999999999999998422  1       00          12335667789999999999


Q ss_pred             HHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHHHHHHHHHHH
Q 015299          203 LAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVI  282 (409)
Q Consensus       203 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al  282 (409)
                      -+||+.++..+.+.|+.  +..+++....++|+++..+-.+ ++... ...+.++......+. ..++.++-|.+.-..+
T Consensus       176 TlYaVSNv~EEflvkn~--d~~elm~~lgLfGaIIsaIQ~i-~~~~~-~~tl~w~~~i~~yl~-f~L~MFllYsl~pil~  250 (336)
T KOG2766|consen  176 TLYAVSNVSEEFLVKNA--DRVELMGFLGLFGAIISAIQFI-FERHH-VSTLHWDSAIFLYLR-FALTMFLLYSLAPILI  250 (336)
T ss_pred             eeeeeccccHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHh-hhccc-eeeEeehHHHHHHHH-HHHHHHHHHHhhHHhe
Confidence            99999999999999998  9999999999999999998854 44421 112223222222222 3445566666667778


Q ss_pred             hhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeee
Q 015299          283 KKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLW  333 (409)
Q Consensus       283 ~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~  333 (409)
                      |..+++-.++-..+.-.|+++.  ..||-..+|...+..+.+..|.+++..
T Consensus       251 k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~  299 (336)
T KOG2766|consen  251 KTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST  299 (336)
T ss_pred             ecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence            8899999999999999999988  677888999999999999999999843

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.68  E-value=3.2e-15  Score=136.07  Aligned_cols=231  Identities=16%  Similarity=0.182  Sum_probs=174.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHH
Q 015299           75 TFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAM  154 (409)
Q Consensus        75 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~  154 (409)
                      ++++..++.+.+++. ++.+.+.++++++++++..+++.++..++|++++++++|+|++.+      ||+++++.++|++
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence            467888899999996 999999999999999999999999999999999999999999999      8999999999999


Q ss_pred             HHHHhcCCccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHH
Q 015299          155 IMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVG  234 (409)
Q Consensus       155 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~  234 (409)
                      ++........          +.+++.+...+....+...|.++.++++++.|+..++.+|.+|+.+.+....+......+
T Consensus        86 lv~~~~~~~~----------~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~g  155 (244)
T PF04142_consen   86 LVQLSSSQSS----------DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFG  155 (244)
T ss_pred             eeecCCcccc----------ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            9863221110          000000111122345668999999999999999999999999988556666677777777


Q ss_pred             HHHHHHHHHHhcCCC-cccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhcccc
Q 015299          235 TLQAIAVTFVIEHKP-SVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENI  313 (409)
Q Consensus       235 ~i~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~  313 (409)
                      .++.++.....+... ......  ..|-...+.-++...++-++....+|+.+...=+....+..+++.++++++|+.++
T Consensus       156 i~~~~~~~~~~~~~~~~~~g~f--~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~  233 (244)
T PF04142_consen  156 ILFNLLALLLSDGSAISESGFF--HGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPP  233 (244)
T ss_pred             HHHHHHHHhcccccccccCCch--hhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            777766654332211 110111  11222233334445556667777899999999999999999999999999999999


Q ss_pred             chhhhhhHHHH
Q 015299          314 YLGSVLGAILI  324 (409)
Q Consensus       314 ~~~~~iG~~li  324 (409)
                      +....+|++++
T Consensus       234 s~~f~lg~~~V  244 (244)
T PF04142_consen  234 SLSFLLGAALV  244 (244)
T ss_pred             chHHhhheecC
Confidence            99999998763

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.66  E-value=4.4e-15  Score=133.31  Aligned_cols=266  Identities=12%  Similarity=0.107  Sum_probs=212.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHH
Q 015299           43 SHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFV  122 (409)
Q Consensus        43 ~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~l  122 (409)
                      ++..+++.+.+++.++-...+.+...+   ....+.|+.+...++.. .++..+.+.|++|++-....+-.+.-.+-+++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~---~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml  125 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKE---LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML  125 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccccc---CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence            567778888888877775554443222   22345567777777777 88889999999999999999999999999999


Q ss_pred             HHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHH
Q 015299          123 MAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIAT  202 (409)
Q Consensus       123 ls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa  202 (409)
                      ++.++.|+|++..      +.+...+.-.|+.+..+.+..+                  +..+....+...|..++...-
T Consensus       126 mg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~------------------s~~~~g~~ns~~G~~Ll~~~L  181 (327)
T KOG1581|consen  126 MGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD------------------SSSKSGRENSPIGILLLFGYL  181 (327)
T ss_pred             HHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC------------------CccccCCCCchHhHHHHHHHH
Confidence            9999999999999      5888888889998887533111                  222334567789999999999


Q ss_pred             HHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcc--cccccchhHHHHHHHHHHHhHHHHHHHHH
Q 015299          203 LAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV--WQIGWDMNLLAAAYAGIVTSSISYFVQGL  280 (409)
Q Consensus       203 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~l~~~  280 (409)
                      +.-+..+..++++.++.|.++..++++.++++++......+..+...+.  +.-..+..+.-++.... ++.+++.+.++
T Consensus       182 ~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~  260 (327)
T KOG1581|consen  182 LFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFY  260 (327)
T ss_pred             HHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehh
Confidence            9999999999999999888999999999999999988775422221111  11122335666666666 56799999999


Q ss_pred             HHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecccc
Q 015299          281 VIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHK  337 (409)
Q Consensus       281 al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~  337 (409)
                      -+++.++.+.+.++.++-.++++++.+++|.+.+..||+|..+++.|+.+-...+++
T Consensus       261 TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  261 TIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             hHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999887665554

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.63  E-value=2.4e-15  Score=117.69  Aligned_cols=135  Identities=13%  Similarity=0.190  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCHHHHHHHHHHHHHHHHHH
Q 015299           15 KPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQP-KITFKVFMQIFVLALLGPVID   93 (409)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~   93 (409)
                      ...++++++++++|...++.|..+ +++||...++.|.++..+++..+....++...+ ..+.|.|..+.+.|+.+ +++
T Consensus         3 ~~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-gls   80 (140)
T COG2510           3 AAIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLS   80 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHH
Confidence            467899999999999999999997 899999999999999999999888776553322 34778899999999777 999


Q ss_pred             HHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           94 QNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        94 ~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      +.+||.|++...++.+..+..++|+++.+++++++|||++..      +++|+.+..+|++++.
T Consensus        81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            999999999999999999999999999999999999999999      7999999999998764

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=3.2e-13  Score=122.97  Aligned_cols=291  Identities=11%  Similarity=0.071  Sum_probs=220.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHH--HHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLV--VYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPV   91 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~--~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   91 (409)
                      ..+++.++.-.+.--.+.+..|.+++..--|..+.  +.+++...+.+...-.. +--+.++++++..+.++...++. .
T Consensus        11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf-~   88 (314)
T KOG1444|consen   11 SSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLF-V   88 (314)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHH-H
Confidence            44566666666666677788898874332233333  36766666555543322 22345668899999999999997 7


Q ss_pred             HHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccC
Q 015299           92 IDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQH  171 (409)
Q Consensus        92 ~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~  171 (409)
                      +....-..+++|++++..+++.+.+|+++++...+++|.+++..      .+.++...++|..+....            
T Consensus        89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~------------  150 (314)
T KOG1444|consen   89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT------------  150 (314)
T ss_pred             HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc------------
Confidence            88888899999999999999999999999999999999888877      688888888888777631            


Q ss_pred             CCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCC--
Q 015299          172 AHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKP--  249 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--  249 (409)
                                     +......|..+++...++.+.+.+..|+..+..+.+.+.+++|..+.+........+++++-.  
T Consensus       151 ---------------d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l  215 (314)
T KOG1444|consen  151 ---------------DLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDAL  215 (314)
T ss_pred             ---------------cceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHH
Confidence                           122335599999999999999999999988776567888899999999888888887555411  


Q ss_pred             --cccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhh
Q 015299          250 --SVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVG  327 (409)
Q Consensus       250 --~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g  327 (409)
                        ..........+..++..++++. .-.++-.++.+..++++.++++..+...+.+-..+++|++.++...+|..+-++|
T Consensus       216 ~~~~~~~~~~~~~~~~~lScv~gf-~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~g  294 (314)
T KOG1444|consen  216 SLNFDNWSDSSVLVVMLLSCVMGF-GISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFG  294 (314)
T ss_pred             HhhcccccchhHHHHHHHHHHHHH-HHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhh
Confidence              1111122234566666666554 4445556889999999999999888888888888888999999999999999999


Q ss_pred             hheeeeccccccc
Q 015299          328 LYSVLWGKHKEKM  340 (409)
Q Consensus       328 ~~l~~~~~~~~~~  340 (409)
                      -++|+..+.++++
T Consensus       295 gv~Y~~~~~~~k~  307 (314)
T KOG1444|consen  295 GVLYSYATFRKKK  307 (314)
T ss_pred             hhHHhhhhhhhcc
Confidence            9999887765544

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=2.4e-15  Score=132.60  Aligned_cols=270  Identities=14%  Similarity=0.119  Sum_probs=205.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhhc----cCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchh
Q 015299           43 SHYVLVVYRHAFATAVIAPFAFFLERK----AQP--KITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNML  116 (409)
Q Consensus        43 ~~~~~~~~r~~~a~i~l~~~~~~~~~~----~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~  116 (409)
                      .|..+.++++++...+...+-....+-    ..+  +++.+..+.++.+.++. .+...+-+++++|.+++...+-.++.
T Consensus        60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt  138 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT  138 (347)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence            477888888888877776655432221    111  24566666677777776 66677779999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCcCcCCCCCcchhHHHHH
Q 015299          117 PAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSI  196 (409)
Q Consensus       117 pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  196 (409)
                      .+|+.+++++++|+|-+..      ...++.+.+.|-.+=+-.+                        ...+.-.+.|.+
T Consensus       139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGvdqE------------------------~~~~~ls~~Gvi  188 (347)
T KOG1442|consen  139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGVDQE------------------------GSTGTLSWIGVI  188 (347)
T ss_pred             hhHHHHhHHhhcccccccc------cceeehhheehheeccccc------------------------cccCccchhhhH
Confidence            9999999999999999888      4666666666655433111                        123455689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccc--c-ccchhHHHHHHHHHHHhHH
Q 015299          197 FLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQ--I-GWDMNLLAAAYAGIVTSSI  273 (409)
Q Consensus       197 ~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~g~~~~~~  273 (409)
                      +++.++++-|+..+..||.....+..-+.+++|.+..+.++++|...+.+.-...+.  . +....|..+...|+++-.+
T Consensus       189 fGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~m  268 (347)
T KOG1442|consen  189 FGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAM  268 (347)
T ss_pred             HHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998877664567788999999999999999885443222222  2 2233566666666655444


Q ss_pred             HHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeeccccccccccC
Q 015299          274 SYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEKMEEFG  344 (409)
Q Consensus       274 ~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~~~~~~~~  344 (409)
                      +|. -.+-+|.++|.+..+-...+-....++++.+++|.-+..-|-|-.++++|...|.+.|+++++++.+
T Consensus       269 gyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~  338 (347)
T KOG1442|consen  269 GYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASA  338 (347)
T ss_pred             hhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhcc
Confidence            432 2345889999999999999999999999999999999999999999999999999998888766544

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.56  E-value=1.3e-13  Score=107.96  Aligned_cols=136  Identities=16%  Similarity=0.179  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHH
Q 015299          194 GSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSI  273 (409)
Q Consensus       194 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  273 (409)
                      -.++++++++.+++..+..|-..++.  ||..-+.....+..+.+..+..........-. .+...|..++..|+ .+++
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~v--dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~-~~~k~~lflilSGl-a~gl   79 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGV--DPDFATTIRTIVILIFLLIVLLVTGNWQAGGE-IGPKSWLFLILSGL-AGGL   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc--CccHHHHHHHHHHHHHHHHHHHhcCceecccc-cCcceehhhhHHHH-HHHH
Confidence            36899999999999999999988888  99999999999988888877764333211111 23457888888885 6789


Q ss_pred             HHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeee
Q 015299          274 SYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLW  333 (409)
Q Consensus       274 ~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~  333 (409)
                      +..+|+++++..+++.+.++.-+.|+++++++++++||++|..+|+|+++|++|.+++.+
T Consensus        80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999999999999999999988764

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.55  E-value=6.7e-14  Score=123.77  Aligned_cols=270  Identities=14%  Similarity=0.098  Sum_probs=185.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCchhhhhhcchhHHHHHHH
Q 015299           45 YVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKF-TSPTFSCAMSNMLPAMTFVM  123 (409)
Q Consensus        45 ~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~~~ii~~~~pi~~~ll  123 (409)
                      ..++|.++++.+.--+++.-- -...+++++.|++...+..    .+..+.+.++++++ ++...-.++.+-+++.++++
T Consensus        34 NLITFaqFlFia~eGlif~sk-f~~~k~kiplk~Y~i~V~m----FF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~  108 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSK-FFTVKPKIPLKDYAITVAM----FFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL  108 (330)
T ss_pred             eehHHHHHHHHHHhceeeecc-ccccCCCCchhhhheehhe----eeeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence            566676766655544433211 1122356666665543332    25567777889988 67788888899999999999


Q ss_pred             HHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHH
Q 015299          124 AVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATL  203 (409)
Q Consensus       124 s~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~  203 (409)
                      +++++|+|.+.+      |+.++++..+|+++..+.+.++...  +.      .+=++.+.......+.+|+.+..++.+
T Consensus       109 g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~------~~l~~~~~~~~~~~w~iGi~lL~~al~  174 (330)
T KOG1583|consen  109 GWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS--KL------SGLDSGSAQSDFFWWLIGIALLVFALL  174 (330)
T ss_pred             HHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh--hh------cccccCcccccchHHHHHHHHHHHHHH
Confidence            999999999999      8999999999999998765444321  00      000111223345567899999999999


Q ss_pred             HHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHH-hcC-----CCcccccc-----cchhHHHHHHHHHHHhH
Q 015299          204 AWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFV-IEH-----KPSVWQIG-----WDMNLLAAAYAGIVTSS  272 (409)
Q Consensus       204 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~-----~~~~~~~~-----~~~~~~~l~~~g~~~~~  272 (409)
                      ..|...++++...++++.|+.+..+|....+....+...-- ..+     ..+.+..+     -+..|..++.-.+ ...
T Consensus       175 ~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L-~Qy  253 (330)
T KOG1583|consen  175 LSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVL-TQY  253 (330)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHH-HHH
Confidence            99999999999999999999999999997766554433210 000     01111111     1223444433221 222


Q ss_pred             HHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeec
Q 015299          273 ISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       273 ~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~  334 (409)
                      .+.--.+..-.+.++.+++++..++-.++.+++.++|+++++++.|+|++++++|.+++...
T Consensus       254 ~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~  315 (330)
T KOG1583|consen  254 FCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV  315 (330)
T ss_pred             HHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22222233345778899999999999999999999999999999999999999998887643

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.50  E-value=1.1e-13  Score=113.03  Aligned_cols=125  Identities=18%  Similarity=0.402  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 015299           25 FGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFT  104 (409)
Q Consensus        25 ~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~  104 (409)
                      ++||...++.|... ++.+|....++|+..+.+ ++++....+++.....+++++......++++..+++.+++++++++
T Consensus         1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            46899999999995 779999999999999998 6666655555444566788899999999997799999999999999


Q ss_pred             CchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299          105 SPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus       105 ~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      +++.++++.++.|+++.+++++++||+++++      +++|+++.++|++++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999      7999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.39  E-value=7.4e-13  Score=108.17  Aligned_cols=124  Identities=20%  Similarity=0.371  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHHHHHHHHHHH
Q 015299          203 LAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVI  282 (409)
Q Consensus       203 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al  282 (409)
                      ++||.+.+..|+..++.  ++...+++++..+.+ .++.....+...  ....+...+...++.+++++.+++.++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI--SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccC--CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence            46899999999999998  999999999999998 666665444432  2222334677788888888899999999999


Q ss_pred             hhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhhee
Q 015299          283 KKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSV  331 (409)
Q Consensus       283 ~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~  331 (409)
                      ++.+++.++.+.+++|+++.++++++++|+++..+++|++++++|+++.
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998765

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.34  E-value=6.1e-11  Score=105.33  Aligned_cols=280  Identities=15%  Similarity=0.141  Sum_probs=195.1

Q ss_pred             HHHHHHHHHhh---hCCCC----hHHHHHHHHHHHHHHHHHHHHHhhhccCCC-------------CCHHHHHHHHHHHH
Q 015299           28 AGMNIITKVSL---NRGMS----HYVLVVYRHAFATAVIAPFAFFLERKAQPK-------------ITFKVFMQIFVLAL   87 (409)
Q Consensus        28 ~~~~~~~k~~~---~~~~~----~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~   87 (409)
                      +.+.+++|++-   .++.+    |+.....-++--++++..+.+++.+...+.             .+.+ ....+..++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~-p~lfl~Pal   94 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN-PVLFLPPAL   94 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC-cceecChHH
Confidence            45677788873   12333    455554444444455555555544322111             0122 223445778


Q ss_pred             HHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccc
Q 015299           88 LGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELF  167 (409)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~  167 (409)
                      +. ..+..+.|.++.+++++..+.+.....+|+.+++.-+++.+++.+      ||+|+....+|++++...+  ..   
T Consensus        95 ~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d--~~---  162 (372)
T KOG3912|consen   95 CD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD--VH---  162 (372)
T ss_pred             HH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee--cc---
Confidence            87 667778888999999999999999999999999999999999999      7999999999999986321  00   


Q ss_pred             cccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 015299          168 WTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEH  247 (409)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  247 (409)
                                  ..++...+..+...|+++.+.+-+.-|+.+++.+|.+++.+.+|...+.+...+|.+++..++..+..
T Consensus       163 ------------~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~y  230 (372)
T KOG3912|consen  163 ------------LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYY  230 (372)
T ss_pred             ------------cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence                        00111123356688999999999999999999999999987899999999999996665554443322


Q ss_pred             C--Cccccccc---------------chhHHHHHHHHHHHhH-HHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHh
Q 015299          248 K--PSVWQIGW---------------DMNLLAAAYAGIVTSS-ISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFIL  309 (409)
Q Consensus       248 ~--~~~~~~~~---------------~~~~~~l~~~g~~~~~-~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~  309 (409)
                      -  ...++-.+               ....+.+...|...+. ..++.=....|..++++-.++-.++..+-.+++....
T Consensus       231 i~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~  310 (372)
T KOG3912|consen  231 IPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMG  310 (372)
T ss_pred             eecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHH
Confidence            1  10111110               1112233333332221 1122223456788899999999999999999999999


Q ss_pred             ccccchhhhhhHHHHHhhhheee
Q 015299          310 AENIYLGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       310 ~e~~~~~~~iG~~li~~g~~l~~  332 (409)
                      .|.+...|+.|.++.+.|+++|+
T Consensus       311 ~E~f~llqilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  311 WEYFHLLQILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.32  E-value=3.7e-12  Score=107.28  Aligned_cols=215  Identities=13%  Similarity=0.050  Sum_probs=163.8

Q ss_pred             HHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccc
Q 015299           90 PVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWT  169 (409)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~  169 (409)
                      ..+.++.|..+++.+++++++.+....-.|+.+++++++++|+...      ++++.++++.|++++...+         
T Consensus        63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D---------  127 (290)
T KOG4314|consen   63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD---------  127 (290)
T ss_pred             EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc---------
Confidence            4788999999999999999999999999999999999999999999      6999999999999987422         


Q ss_pred             cCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCC-CchhHHHHHHHHHHHH-HHHHHHHhcC
Q 015299          170 QHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKN-HQLSLTSLMCFVGTLQ-AIAVTFVIEH  247 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~-~~~~~~~~~~  247 (409)
                                      ......++|+.+++.+++..|+|-++.|+.....+- +.-..+.-..++..++ ..|.......
T Consensus       128 ----------------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T  191 (290)
T KOG4314|consen  128 ----------------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFT  191 (290)
T ss_pred             ----------------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence                            123445899999999999999999999998876521 2222222222222222 2222221112


Q ss_pred             CCcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhh
Q 015299          248 KPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVG  327 (409)
Q Consensus       248 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g  327 (409)
                      ..+.|+-.....|..+...+.+ +....++.+.++..+.|...++-+....+-....+.++-+-..+...+.|..+|+.|
T Consensus       192 ~VE~~qsFA~~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~  270 (290)
T KOG4314|consen  192 GVEHLQSFAAAPWGCLCGAAGL-SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIG  270 (290)
T ss_pred             chHHHHHHhhCCchhhhhHHHH-HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2233332223357777776665 345567788999999999999999999999999999888878899999999999999


Q ss_pred             hheeeeccc
Q 015299          328 LYSVLWGKH  336 (409)
Q Consensus       328 ~~l~~~~~~  336 (409)
                      .+++.....
T Consensus       271 FiLiiiP~d  279 (290)
T KOG4314|consen  271 FILIIIPED  279 (290)
T ss_pred             HHheecccc
Confidence            998887543

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.29  E-value=6.6e-11  Score=104.61  Aligned_cols=278  Identities=13%  Similarity=0.143  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHHhh-hCCCCh--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015299           24 QFGYAGMNIITKVSL-NRGMSH--YVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAG  100 (409)
Q Consensus        24 ~~~~~~~~~~~k~~~-~~~~~~--~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a  100 (409)
                      .+++=....+-.+.+ .+++.|  +.+++.++.+-..+-+..+... +..+...+||   .+..++.+. .+...+.+-+
T Consensus        52 Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~r---tY~~la~~t-~gtmGLsn~S  126 (367)
T KOG1582|consen   52 FFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWR---TYVILAFLT-VGTMGLSNGS  126 (367)
T ss_pred             HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchh---HhhhhHhhh-hhccccCcCc
Confidence            334445555666655 356765  4556666555433333322221 1222233444   455555555 6677778889


Q ss_pred             hcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCc
Q 015299          101 LKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHAHPHDKSDA  180 (409)
Q Consensus       101 l~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~  180 (409)
                      +.|+.-..-.++.++.-+-+++.+.++-+.|..+.      +.++..+...|.++..+.+..                  
T Consensus       127 lgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~------------------  182 (367)
T KOG1582|consen  127 LGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ------------------  182 (367)
T ss_pred             cccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc------------------
Confidence            99998888888889888889999999999999999      799999999999999875522                  


Q ss_pred             CcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccc---cc
Q 015299          181 TTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIG---WD  257 (409)
Q Consensus       181 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~  257 (409)
                           .+.+.+.+|..+.-+|-++-|.-.-++++..+.++.+..+++++...++.+.++.......+-++.|+.-   +.
T Consensus       183 -----~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~  257 (367)
T KOG1582|consen  183 -----TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPV  257 (367)
T ss_pred             -----cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcH
Confidence                 2334557899999999999999999999999988556778888888888888877776444434444321   11


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeeccc
Q 015299          258 MNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKH  336 (409)
Q Consensus       258 ~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~  336 (409)
                      ..+...+.... .+.+++.....-++..++.+++.+...+-.+++++++++|..++|....-|..+|+.|+++-.+.|+
T Consensus       258 ~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~  335 (367)
T KOG1582|consen  258 RTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR  335 (367)
T ss_pred             hHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence            13333333333 4566777777778999999999999999999999999999999999999999999999999887764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.27  E-value=7e-11  Score=100.30  Aligned_cols=139  Identities=19%  Similarity=0.209  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh-----hCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc------cchh
Q 015299          194 GSIFLIIATLAWASLFVLQTKALET-----YKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQ---IG------WDMN  259 (409)
Q Consensus       194 G~~~~l~aa~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~------~~~~  259 (409)
                      |.++++.+.++.|++.++.|+..++     .+.++..+..+....+.+.++|...+.|.......   ..      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6789999999999999999999888     45799999999999999999999887766431111   10      1123


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeee
Q 015299          260 LLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLW  333 (409)
Q Consensus       260 ~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~  333 (409)
                      +..++..|+ ...+.+...+..+++++|.+.+++..++.+..++++++++||+++..+++|.++.++|.++|++
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            444555555 3567778888999999999999999999999999999999999999999999999999999874

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.26  E-value=1.9e-09  Score=97.99  Aligned_cols=221  Identities=17%  Similarity=0.160  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhc-chhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHH
Q 015299           77 KVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMS-NMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMI  155 (409)
Q Consensus        77 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~-~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~l  155 (409)
                      +.+...++.|++- .+++...+.|+++.+++.+..+. .++-+.+.+++.++++|--+...  -..-.+++++.++|+++
T Consensus        43 ~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~--~~~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   43 TSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQ--KIIGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcch--HHHHHHHHHHHHHHHHH
Confidence            7777778888876 99999999999999999999997 67888899999999999776652  00012367777888887


Q ss_pred             HHHhcCCccccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHH
Q 015299          156 MTLYKGPIVELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGT  235 (409)
Q Consensus       156 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  235 (409)
                      ....++.+                   ++..+..+...|....+.+++.|..|.+..|..  +.  ++.....-+.....
T Consensus       120 ts~~~~~~-------------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~--~~~~~~lPqaiGm~  176 (269)
T PF06800_consen  120 TSYQDKKS-------------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HV--SGWSAFLPQAIGML  176 (269)
T ss_pred             hccccccc-------------------cccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CC--ChhHhHHHHHHHHH
Confidence            76433211                   011124566789999999999999999996662  33  77777766655544


Q ss_pred             HHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccch
Q 015299          236 LQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYL  315 (409)
Q Consensus       236 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~  315 (409)
                      +..+.+..+. +  .  .......|..+ ..|++ -.++..++..+.++.+.++.=.+..+.++++.+.+.++++|.=+.
T Consensus       177 i~a~i~~~~~-~--~--~~~~k~~~~ni-l~G~~-w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~  249 (269)
T PF06800_consen  177 IGAFIFNLFS-K--K--PFFEKKSWKNI-LTGLI-WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTK  249 (269)
T ss_pred             HHHHHHhhcc-c--c--cccccchHHhh-HHHHH-HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCch
Confidence            4444444422 1  1  11112234333 33443 457888899999999999999999999999999999999998775


Q ss_pred             h----hhhhHHHHHhhhhe
Q 015299          316 G----SVLGAILIVVGLYS  330 (409)
Q Consensus       316 ~----~~iG~~li~~g~~l  330 (409)
                      .    .++|.+++++|.++
T Consensus       250 ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  250 KEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hhHHHHHHHHHHHHHhhhc
Confidence            5    56788989888654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.24  E-value=2e-10  Score=106.41  Aligned_cols=133  Identities=14%  Similarity=0.297  Sum_probs=113.7

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHhhhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q 015299           12 ETSKPYFAMISLQFGYAGMNIITKVSLNRGMSH--YVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLG   89 (409)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~--~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   89 (409)
                      .+.+|.+++++++++|+...+..|... ++.++  .....+++.++.+++.++....++.  +..+.+.+..++..++++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence            456899999999999999999999994 56664  4555578999998888887664332  233667788888899888


Q ss_pred             HHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHH
Q 015299           90 PVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGA  153 (409)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv  153 (409)
                      ..+++.++++++++.+++.++++.++.|+++.++++++++|+++..      +++|+.+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            7899999999999999999999999999999999999999999999      799999999886

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.20  E-value=6.1e-11  Score=95.23  Aligned_cols=103  Identities=13%  Similarity=0.286  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhc--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHH
Q 015299           49 VYRHAFATAVIAPFAFFLERK--AQPKITFKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVI  126 (409)
Q Consensus        49 ~~r~~~a~i~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l  126 (409)
                      .+|+..+.+++..+...+++.  ..+..+.+.+.+.+..|+++...++.++++|+++.+ +.++++.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            578999998888887774332  122234456677778888885689999999999999 68899999999999999999


Q ss_pred             HhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299          127 CRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus       127 ~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      ++|||++++      ++++++++++|++++..
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            999999999      79999999999999985

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=99.15  E-value=1.3e-09  Score=102.24  Aligned_cols=279  Identities=16%  Similarity=0.223  Sum_probs=156.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCHHH-HHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQP-KITFKV-FMQIFVLALLGP   90 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~g~~~~   90 (409)
                      ...|.++++.++++.+....+.|....+ .+                       +...+. ...++. ....++.|++..
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~-----------------------~~~~~~~~~~~~~l~~~~W~~G~~~~   60 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLR-LP-----------------------RGSLRAGSGGRSYLRRPLWWIGLLLM   60 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-----------------------cccccccchhhHHHhhHHHHHHHHHH
Confidence            4679999999999999999999998511 00                       000000 001111 123445566666


Q ss_pred             HHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCcccccccc
Q 015299           91 VIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQ  170 (409)
Q Consensus        91 ~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~  170 (409)
                      .++..+.+.|+.+.|.+..+.+..+.-++.++++.+++|||++++      +++|+.++++|..+++... |..+     
T Consensus        61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~~-~~~~-----  128 (300)
T PF05653_consen   61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIFA-PKEE-----  128 (300)
T ss_pred             hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEeC-CCCC-----
Confidence            778888899999999999999999999999999999999999999      7999999999998887432 2210     


Q ss_pred             CCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHH---HHHHhcC
Q 015299          171 HAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIA---VTFVIEH  247 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~  247 (409)
                        +.+   +.+.-.+.-.+...+........ +...+.....+|..++   +..........+++...+.   +......
T Consensus       129 --~~~---t~~~l~~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~~---~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~  199 (300)
T PF05653_consen  129 --PIH---TLDELIALLSQPGFLVYFILVLV-LILILIFFIKPRYGRR---NILVYISICSLIGSFTVLSAKAISILIKL  199 (300)
T ss_pred             --CcC---CHHHHHHHhcCcceehhHHHHHH-HHHHHHHhhcchhccc---ceEEEEEEeccccchhhhHHHHHHHHHHH
Confidence              000   00000000000001111111111 1222222222221111   2222222222222221111   1110111


Q ss_pred             CC-cccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhH-HHHHHHHHHHHhcccc--ch----hhhh
Q 015299          248 KP-SVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLM-MIIVAIMGSFILAENI--YL----GSVL  319 (409)
Q Consensus       248 ~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~-pv~a~l~~~~~~~e~~--~~----~~~i  319 (409)
                      .. ..........|..++.+ +++...-....++|+++.+++.+.++.+.- ...+++-|.++++|..  +.    ....
T Consensus       200 ~~~g~~~f~~~~~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~  278 (300)
T PF05653_consen  200 TFSGDNQFTYPLTYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLC  278 (300)
T ss_pred             HhcCchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence            00 11112222234333332 334445556668999999999999888874 4556666777888753  33    3577


Q ss_pred             hHHHHHhhhheeeecccc
Q 015299          320 GAILIVVGLYSVLWGKHK  337 (409)
Q Consensus       320 G~~li~~g~~l~~~~~~~  337 (409)
                      |..+++.|+++....|..
T Consensus       279 G~~~ii~GV~lL~~~~~~  296 (300)
T PF05653_consen  279 GFLIIIIGVFLLSSSKDK  296 (300)
T ss_pred             HHHHHHHhhheeeccCch
Confidence            888899999988765443

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.12  E-value=5.3e-10  Score=96.19  Aligned_cols=288  Identities=11%  Similarity=0.091  Sum_probs=190.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-hCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 015299           15 KPYFAMISLQFGYAGMNIITKVSL-NRGMSH-YVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVI   92 (409)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~-~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (409)
                      .+.+--+.+.+   ++.+..|+.+ +.+++- +.+++.+.++..+-+..+-+.+--+. +..+.|.|.   ..+++- ..
T Consensus         9 ~~~lsYc~sSI---lmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~f-R~t~aK~Wf---piSfLL-v~   80 (309)
T COG5070           9 TASLSYCFSSI---LMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEF-RLTKAKKWF---PISFLL-VV   80 (309)
T ss_pred             hHHHHHHHHHH---HHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhe-ehhhhhhhc---CHHHHH-HH
Confidence            34444445555   4455567765 234443 44455555555444443322211111 122233343   333333 33


Q ss_pred             HHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccccccCC
Q 015299           93 DQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQHA  172 (409)
Q Consensus        93 ~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~~~  172 (409)
                      ..+.--.+++|++++..+++.+++.+.++....++++.|++-.+      ..+.++.+..-+...+.+....        
T Consensus        81 MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~q~~--------  146 (309)
T COG5070          81 MIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQQAS--------  146 (309)
T ss_pred             HHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchhhHH--------
Confidence            34455789999999999999999999999999999999998884      7776666665555542111000        


Q ss_pred             CCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcc-
Q 015299          173 HPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSV-  251 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-  251 (409)
                                  .......+.|.++.....+..+.+....|+-.+-.+-.....++|....+..+++.+.+++|+..+. 
T Consensus       147 ------------~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n  214 (309)
T COG5070         147 ------------AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGN  214 (309)
T ss_pred             ------------HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcch
Confidence                        0011245679999999999999999998887664433567788999999999999988877653221 


Q ss_pred             ccc-ccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhhe
Q 015299          252 WQI-GWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYS  330 (409)
Q Consensus       252 ~~~-~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l  330 (409)
                      ... .+.....++...|+ +++.--++-.+.++.++.++.++++.++..-..+.|.++|||+.+...+....+-..+..+
T Consensus       215 ~annl~~d~l~am~ISgl-~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i  293 (309)
T COG5070         215 LANNLSVDSLMAMFISGL-CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI  293 (309)
T ss_pred             hhcCCChHHHHHHHHHHH-HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence            111 11113344555555 4555556667889999999999999999999999999999999999999988887766666


Q ss_pred             eeecccc
Q 015299          331 VLWGKHK  337 (409)
Q Consensus       331 ~~~~~~~  337 (409)
                      |...+.+
T Consensus       294 Yavaks~  300 (309)
T COG5070         294 YAVAKSK  300 (309)
T ss_pred             HHHHHHH
Confidence            6555443

>PRK13499 rhamnose-proton symporter; Provisional

Probab=99.10  E-value=1e-07  Score=90.17  Aligned_cols=299  Identities=13%  Similarity=0.089  Sum_probs=179.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHH-HHHHHHHHHH-HHHhhh---ccCCCCCHHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRH-AFATAVIAPF-AFFLER---KAQPKITFKVFMQIFVLAL   87 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~-~~a~i~l~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~   87 (409)
                      ...|++..+++.++||..++..|..  +..+ ++..+.-. +++.+++-.. ..+..+   ......+.+.+..-++.|+
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKV--KKWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hHHHHHHHHHHHHHhhccccccccc--CCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            4679999999999999999999996  4333 22222211 1111111100 011011   1112245677777777888


Q ss_pred             HHHHHHHHHHHhhhcccCchhhhhhc-chhHHHHHHHHHHHhhhhc---ccccccccchhhhHHHHHHHHHHHHHhcCCc
Q 015299           88 LGPVIDQNFYYAGLKFTSPTFSCAMS-NMLPAMTFVMAVICRMEKI---NMKKVRCQAKVVGTAVTVAGAMIMTLYKGPI  163 (409)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~~~ii~-~~~pi~~~lls~l~l~e~~---~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~  163 (409)
                      +- .+++..++.++++..++.+..+. .++-++..++..++++|=-   +..  -...-.+|+++.++|+++....+...
T Consensus        82 ~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~k  158 (345)
T PRK13499         82 LW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQLK  158 (345)
T ss_pred             HH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            76 99999999999999999998884 6889999999999998743   111  11224678899999999998533111


Q ss_pred             cccccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhCCCchhHHHHHHH---H
Q 015299          164 VELFWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLF-------VLQTKALETYKNHQLSLTSLMCF---V  233 (409)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~---~  233 (409)
                      .            ++  ++.++..+.+...|+++++++++.++.|.       ...+...+ .+.++.....-+..   .
T Consensus       159 ~------------~~--~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~  223 (345)
T PRK13499        159 E------------RK--MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMG  223 (345)
T ss_pred             c------------cc--cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHH
Confidence            0            00  00000234567899999999999999999       43333211 22244433333332   3


Q ss_pred             HHHHHHH-HHHHh--c-CCCcccc-cc-c----chhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeee---ch-hhHHH
Q 015299          234 GTLQAIA-VTFVI--E-HKPSVWQ-IG-W----DMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATA---FS-PLMMI  299 (409)
Q Consensus       234 ~~i~~~~-~~~~~--~-~~~~~~~-~~-~----~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~---~~-~l~pv  299 (409)
                      +.++... +....  . ++..... .. +    ..+...-+..|+ .-.++++++..+-++.+......   +. .+..+
T Consensus       224 G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Vi  302 (345)
T PRK13499        224 GGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVL  302 (345)
T ss_pred             HHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHH
Confidence            3333222 11211  1 1111011 11 1    112122233333 45677778888888776655544   44 77889


Q ss_pred             HHHHHHHHHhccccc------hhhhhhHHHHHhhhheeeec
Q 015299          300 IVAIMGSFILAENIY------LGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       300 ~a~l~~~~~~~e~~~------~~~~iG~~li~~g~~l~~~~  334 (409)
                      ++.++|. +++|.=+      ..-++|.+++++|..+....
T Consensus       303 istlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        303 CGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             HHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            9999999 5998755      55799999999998776544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.09  E-value=3.8e-09  Score=99.67  Aligned_cols=136  Identities=12%  Similarity=0.087  Sum_probs=113.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVI   92 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (409)
                      +..|.++.++++++|+...+..|.. .++.++.... +...++.+++.++......  ....++..+...+..|++...+
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRA-GAEHGPATVA-IGSLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH-hccCCchHHH-HHHHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999998 4667777764 4456666677776655322  1224556666677899998889


Q ss_pred             HHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           93 DQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        93 ~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      .+.++++++++.+++.++++.++.|+++.++++++++|+++..      +++|.++.++|++....
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999      79999999999999874

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.08  E-value=3.7e-09  Score=99.75  Aligned_cols=138  Identities=13%  Similarity=0.104  Sum_probs=115.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVI   92 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (409)
                      +..|.++.++++++|+...+..|.. .. -++....+++..++.+.+.++............+...|..++..++++..+
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRL-PL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhc-CC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999999997 33 345666778888888888777654322211123567888889999998789


Q ss_pred             HHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           93 DQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        93 ~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      .+.++++++++.+++.++++..+.|++++++++++++|+++..      +++|.++.+.|++++..
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999      79999999999998863

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.05  E-value=2.2e-09  Score=100.69  Aligned_cols=133  Identities=11%  Similarity=0.096  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHHH
Q 015299          195 SIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSIS  274 (409)
Q Consensus       195 ~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  274 (409)
                      ..+.+++++++|...+..|+..++.  ++.  ..+.+...++.+.|+.... .....+..... .++..+..+.++....
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~   76 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKE--PDF--LWWALLAHSVLLTPYGLWY-LAQVGWSRLPA-TFWLLLAISAVANMVY   76 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCch--hHH--HHHHHHHHHHHHHHHHHHh-cccCCCCCcch-hhHHHHHHHHHHHHHH
Confidence            4678999999999999999877765  443  3555566666666666522 11223333232 3343444455567788


Q ss_pred             HHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeee
Q 015299          275 YFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLW  333 (409)
Q Consensus       275 ~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~  333 (409)
                      +.++++++++.+++.++++.++.|+++.+++++++||+++..+++|.+++++|+++...
T Consensus        77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~  135 (281)
T TIGR03340        77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL  135 (281)
T ss_pred             HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999887764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>TIGR00803 nst UDP-galactose transporter

Probab=99.05  E-value=1.7e-09  Score=97.74  Aligned_cols=215  Identities=14%  Similarity=0.094  Sum_probs=134.7

Q ss_pred             cCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCccccc--cccCCCCCCCCCcC
Q 015299          104 TSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELF--WTQHAHPHDKSDAT  181 (409)
Q Consensus       104 ~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~--~~~~~~~~~~~~~~  181 (409)
                      ++........+..++++++..+.+.++|++..      |++++++...|++...+.+.+.....  ...-...+.+++  
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~--   73 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQS--   73 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCC--
Confidence            34556677788999999999999999999966      79999999999886543221110000  000000000000  


Q ss_pred             cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcC-C-Ccccc--cccc
Q 015299          182 TSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEH-K-PSVWQ--IGWD  257 (409)
Q Consensus       182 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~-~~~~~--~~~~  257 (409)
                      +.......+...|..+.+.+.++.+...+++++..|+.+......+....+.+.+....... ... + ...+.  ...+
T Consensus        74 ~~~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (222)
T TIGR00803        74 SAKTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLL-WSDGTLISNFGFFIGYP  152 (222)
T ss_pred             CccccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHh-hcccchhhccCcccCCc
Confidence            00011223567888889999999999999999986655112222222222333332222111 111 1 01111  1111


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhhee
Q 015299          258 MNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSV  331 (409)
Q Consensus       258 ~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~  331 (409)
                      ...+.+    ++..++++.+..+.+++.++...+....++++++.++++++|||+++..+++|+.+++.|+++|
T Consensus       153 ~~~~~~----~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       153 TAVWIV----GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             hHHHHH----HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            111222    2345566777889999999999999999999999999999999999999999999999998764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.03  E-value=2.4e-09  Score=101.24  Aligned_cols=138  Identities=11%  Similarity=0.042  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccc--cccchhHHHHHHHH
Q 015299          190 DWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQ--IGWDMNLLAAAYAG  267 (409)
Q Consensus       190 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g  267 (409)
                      +...|.++.++++++|+...+..|.. .+.  +|.+..+++..++.+++.+..... +......  ..+...+ .....+
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~--~~~~~~~~R~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~   79 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV--PADEILTHRVIWSFFFMVVLMSIC-RQWSYLKTLIQTPQKI-FMLAVS   79 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC--CHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHcCHHHH-HHHHHH
Confidence            45689999999999999999999764 556  999999999999988777665432 2111100  1111122 223355


Q ss_pred             HHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheee
Q 015299          268 IVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       268 ~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~  332 (409)
                      .++.++.+.++++++++.+++.++++.++.|++..++++++++|+++..+++|.++.++|+.++.
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            56677889999999999999999999999999999999999999999999999999999988765

>TIGR00688 rarD rarD protein

Probab=98.96  E-value=4.9e-09  Score=96.98  Aligned_cols=136  Identities=10%  Similarity=0.132  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCC---cccccccchh-HHHHHHHHH
Q 015299          193 LGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKP---SVWQIGWDMN-LLAAAYAGI  268 (409)
Q Consensus       193 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~g~  268 (409)
                      .|..+.++++++|+...+..|. ..+.  +|.+..+++++++.+.+.+......+..   ..+....... +..+...|+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~--~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPL--PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccC--CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            4889999999999999999997 4556  9999999999999888776654332210   1111111112 334445555


Q ss_pred             HHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheee
Q 015299          269 VTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       269 ~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~  332 (409)
                      + ..+++.++++++++.+++.++.+.++.|+++.++++++++|+++..+++|.++.++|+.++.
T Consensus        79 ~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~  141 (256)
T TIGR00688        79 L-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI  141 (256)
T ss_pred             H-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            4 56889999999999999999999999999999999999999999999999999999987654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.96  E-value=1.8e-08  Score=95.13  Aligned_cols=133  Identities=14%  Similarity=0.164  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVID   93 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   93 (409)
                      ..|.+++++++++|+...++.|.. .++.++....+   ..+.+.+.+..... .......++..|..++..++. .++.
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~-~~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-t~~~  228 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKY-ARGKNGITLFF---ILTALALWIKYFLS-PQPAMVFSLPAIIKLLLAAAA-MGFG  228 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHHH---HHHHHHHHHHHHHh-cCccccCCHHHHHHHHHHHHH-HHHH
Confidence            468999999999999999999998 46677765433   22333333332232 211123566778777777755 4889


Q ss_pred             HHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           94 QNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        94 ~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      +.++++++++.+++.++++.++.|++..++++++++|+++..      +++|.++.+.|+.+...
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            999999999999999999999999999999999999999999      79999999999988864

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.93  E-value=3e-08  Score=95.59  Aligned_cols=137  Identities=8%  Similarity=0.088  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhhccC----CCCCHHHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSLNRGMSH-YVLVVYRHAFATAVIAPFAFFLERKAQ----PKITFKVFMQIFVLALL   88 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~r~~~a~i~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~   88 (409)
                      ..|.+++++++++|+...++.|... ...++ ...+++...++.+.+.+......+...    ...+.. ...++..++.
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~  265 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII  265 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH
Confidence            4588999999999999999999885 45544 456667777766666555544332111    112222 2223344444


Q ss_pred             HHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHh
Q 015299           89 GPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLY  159 (409)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~  159 (409)
                       ..+.+.++++++++.+++.+++..++.|++++++++++++|++++.      +++|.++.+.|+.++...
T Consensus       266 -t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        266 -TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWG  329 (358)
T ss_pred             -HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhh
Confidence             3678889999999999999999999999999999999999999999      799999999999998753

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.83  E-value=4.5e-08  Score=79.86  Aligned_cols=122  Identities=16%  Similarity=0.161  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhH
Q 015299          193 LGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSS  272 (409)
Q Consensus       193 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  272 (409)
                      .|.++.+++.++.+...++.|+..++.  ........ .    . ......           .   .....+++|+++.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~--g~~~~~~~-~----~-~~~~~~-----------~---~p~~~i~lgl~~~~   59 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRL--PLLSHAWD-F----I-AALLAF-----------G---LALRAVLLGLAGYA   59 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhC--CCccchhH-H----H-HHHHHH-----------h---ccHHHHHHHHHHHH
Confidence            477888999999999999999988776  32221111 0    0 000010           0   11225667888899


Q ss_pred             HHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHH--HhccccchhhhhhHHHHHhhhheeeeccc
Q 015299          273 ISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSF--ILAENIYLGSVLGAILIVVGLYSVLWGKH  336 (409)
Q Consensus       273 ~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~--~~~e~~~~~~~iG~~li~~g~~l~~~~~~  336 (409)
                      +++.+|.+++++.+++.+.++..+.+++..+.++.  ++||++|+.+++|.++|++|++++.+.++
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999988888888885  89999999999999999999999876444

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.82  E-value=1.5e-07  Score=89.10  Aligned_cols=137  Identities=15%  Similarity=0.219  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCC---hHHHHHHHHHHHHHHHHHHHHHhhhc-----cCCCCCHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSLNRGMS---HYVLVVYRHAFATAVIAPFAFFLERK-----AQPKITFKVFMQIFVL   85 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~r~~~a~i~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~   85 (409)
                      ..|.+++++++++|+...++.|... +..+   .....++-..++.+.+..........     .....+...|..++..
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            4699999999999999999999873 3332   23333444444443333332222211     1123567888999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           86 ALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      +++...+.+.++++++++.+++.++.+..+.|++..++++++++|+++..      +++|.++.++|+.+..
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            99998999999999999999999999999999999999999999999999      7999999999998876

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.75  E-value=2.8e-07  Score=78.09  Aligned_cols=133  Identities=19%  Similarity=0.311  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCC----C-------CHHH
Q 015299           16 PYFAMISLQFGYAGMNIITKVSLNR------GMSHYVLVVYRHAFATAVIAPFAFFLERKAQPK----I-------TFKV   78 (409)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~----~-------~~~~   78 (409)
                      |.++++.+.++.++..+..|..+.+      ..++.++..+-...+.+++.+.+...++....+    .       +.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            5788999999999999999998844      799999999999999999999887755432110    0       2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHH
Q 015299           79 FMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMI  155 (409)
Q Consensus        79 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~l  155 (409)
                      +..++..|+++ ...+...+..++++++-..+++.....+++.++++++++|+++..      +++|++++++|+++
T Consensus        81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            56666677776 888999999999999999999999999999999999999999999      79999999999875

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.74  E-value=8.3e-08  Score=91.00  Aligned_cols=139  Identities=18%  Similarity=0.227  Sum_probs=107.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhC--CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC---------CH-HHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNR--GMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKI---------TF-KVFM   80 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~---------~~-~~~~   80 (409)
                      +..|.+++++++++|+...+..|... +  +.++..+.++....+.+.++|+....+.......         .. ..+.
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT  221 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence            45699999999999999999999985 5  7999999999999999999998765332110000         00 1111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           81 QIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        81 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      ..+..+.......+.+++++++++++..++++..+.|++++++++++++|+++..      +++|..+.++|+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            1223333222344467778999999999999999999999999999999999999      79999999999999874

specificities overlap.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.68  E-value=6.4e-09  Score=91.11  Aligned_cols=276  Identities=18%  Similarity=0.197  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 015299           15 KPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQ   94 (409)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   94 (409)
                      ..++.+++-++.||+...+....   +-.|.+...---+-+.++-+.+++. .+   |..+++.+..-++.|.+- ..++
T Consensus         2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-~~---p~~T~~~~iv~~isG~~W-s~GQ   73 (288)
T COG4975           2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-VS---PELTLTIFIVGFISGAFW-SFGQ   73 (288)
T ss_pred             hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-ec---CccchhhHHHHHHhhhHh-hhhh
Confidence            46788899999999999887665   4556665544433444443333333 22   556677777767777665 9999


Q ss_pred             HHHHhhhcccCchhhhhhc-chhHHHHHHHHHHHhhhhcccccccccchhh---hHHHHHHHHHHHHHhcCCcccccccc
Q 015299           95 NFYYAGLKFTSPTFSCAMS-NMLPAMTFVMAVICRMEKINMKKVRCQAKVV---GTAVTVAGAMIMTLYKGPIVELFWTQ  170 (409)
Q Consensus        95 ~~~~~al~~~~~~~~~ii~-~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~---~~~i~~~Gv~li~~~~~~~~~~~~~~  170 (409)
                      ...+.|+++++++.+..+. .++-+-+.+++.+.++|--+..+     .++   ++++.++|+.+-...+         +
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliviG~~lTs~~~---------~  139 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIVIGIYLTSKQD---------R  139 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHHHhheEeeeec---------c
Confidence            9999999999999999996 47788889999999999666552     222   2333333443333111         0


Q ss_pred             CCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCc
Q 015299          171 HAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPS  250 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  250 (409)
                                ++....+.++...|....+.+.+.|-.|.++.+...  .  +.+....-+...+.+..+.+.. ...+ .
T Consensus       140 ----------~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v--~g~saiLPqAiGMv~~ali~~~-~~~~-~  203 (288)
T COG4975         140 ----------NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD--V--DGLSAILPQAIGMVIGALILGF-FKME-K  203 (288)
T ss_pred             ----------ccccccChHhhhhheeeeeeeccceeeeEeeecccc--c--cchhhhhHHHHHHHHHHHHHhh-cccc-c
Confidence                      011122345567899999999999999999966543  2  4444444444433333333333 2211 1


Q ss_pred             ccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhh----hhhHHHHHh
Q 015299          251 VWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGS----VLGAILIVV  326 (409)
Q Consensus       251 ~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~----~iG~~li~~  326 (409)
                         ......|..+ ..|++ -.+++..+..+-++.+.++.=.+.-+..+++.+-+.++++|+=|..+    ++|.+++++
T Consensus       204 ---~~~K~t~~ni-i~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivv  278 (288)
T COG4975         204 ---RFNKYTWLNI-IPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVV  278 (288)
T ss_pred             ---chHHHHHHHH-hhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHH
Confidence               1112233333 34543 46788888889999999999999999999999999999999888664    678889988


Q ss_pred             hhheeee
Q 015299          327 GLYSVLW  333 (409)
Q Consensus       327 g~~l~~~  333 (409)
                      |.++...
T Consensus       279 gai~lg~  285 (288)
T COG4975         279 GAILLGI  285 (288)
T ss_pred             Hhhhhhe
Confidence            8766543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.64  E-value=7.7e-08  Score=77.16  Aligned_cols=107  Identities=14%  Similarity=0.238  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHH
Q 015299          229 LMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFI  308 (409)
Q Consensus       229 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~  308 (409)
                      +...++.+..........+....+.......+...+..|+++...++.++.+++++.++ .++++..+.|+++.++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555432221111111112345555666776666889999999999995 88899999999999999999


Q ss_pred             hccccchhhhhhHHHHHhhhheeeeccc
Q 015299          309 LAENIYLGSVLGAILIVVGLYSVLWGKH  336 (409)
Q Consensus       309 ~~e~~~~~~~iG~~li~~g~~l~~~~~~  336 (409)
                      ++|+++..+++|.+++++|++++.+.+.
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999998877543

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=8.2e-08  Score=87.78  Aligned_cols=279  Identities=14%  Similarity=0.204  Sum_probs=165.9

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHH
Q 015299           11 LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGP   90 (409)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   90 (409)
                      .++.+|.++++.+.++.|.+..+-|..+.+           ....        -.+........ .+.  +.++.|.+.+
T Consensus        17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~~--------~~ra~~gg~~y-l~~--~~Ww~G~ltm   74 (335)
T KOG2922|consen   17 SDNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGAS--------GLRAGEGGYGY-LKE--PLWWAGMLTM   74 (335)
T ss_pred             cCceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhhh--------cccccCCCcch-hhh--HHHHHHHHHH
Confidence            345689999999999999999999998522           1100        00001111111 122  4566778888


Q ss_pred             HHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCcccccccc
Q 015299           91 VIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVELFWTQ  170 (409)
Q Consensus        91 ~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~~  170 (409)
                      .++....|.|+.+.|.+..+.+..++-++.++++..+++||++..      ..+|++++++|-.+++. ..|...     
T Consensus        75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-haP~e~-----  142 (335)
T KOG2922|consen   75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HAPKEQ-----  142 (335)
T ss_pred             HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ecCccc-----
Confidence            889999999999999999999999999999999999999999999      79999999999888873 222210     


Q ss_pred             CCCCCCCCCcCcCCC-CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhC-CCchhHHHHHHHHHHHHHHH-------H
Q 015299          171 HAHPHDKSDATTSTA-SSEKDWFLGSIFLIIATLAWASLFVLQTKALETYK-NHQLSLTSLMCFVGTLQAIA-------V  241 (409)
Q Consensus       171 ~~~~~~~~~~~~~~~-~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~-------~  241 (409)
                         +-  .+.....+ ..+.. .+.....+...++.  -....   .++++ .+.+.+......+|+....-       +
T Consensus       143 ---~i--~t~~el~~~~~~~~-Fliy~~~iil~~~i--l~~~~---~p~~g~tnilvyi~i~s~iGS~tV~svKalg~ai  211 (335)
T KOG2922|consen  143 ---EI--ESVEEVWELATEPG-FLVYVIIIILIVLI--LIFFY---APRYGQTNILVYIGICSLIGSLTVMSVKALGIAI  211 (335)
T ss_pred             ---cc--ccHHHHHHHhcCcc-HHHHHHHHHHHHHH--Hheee---cccccccceeehhhHhhhhcceeeeeHHHHHHHH
Confidence               00  00000000 00011 11111111111111  11111   12221 14444444444443322111       1


Q ss_pred             HHHhcCCCcccccccchhHHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhh-HHHHHHHHHHHHhccccch-----
Q 015299          242 TFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPL-MMIIVAIMGSFILAENIYL-----  315 (409)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l-~pv~a~l~~~~~~~e~~~~-----  315 (409)
                      -..+.+.   .+...+..|..++.+.. |...-....+.|++..+++.++++.|+ -..++++.+.++|+|.-..     
T Consensus       212 klt~~g~---~ql~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i  287 (335)
T KOG2922|consen  212 KLTFSGN---NQLFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDI  287 (335)
T ss_pred             HHHhcCC---cccccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            1111111   12222234555554444 333444555899999999999988887 5667788888899885432     


Q ss_pred             -hhhhhHHHHHhhhheeeeccccc
Q 015299          316 -GSVLGAILIVVGLYSVLWGKHKE  338 (409)
Q Consensus       316 -~~~iG~~li~~g~~l~~~~~~~~  338 (409)
                       ....|+..++.|+.+....|..+
T Consensus       288 ~~~~~Gf~ti~~G~flL~~~kd~~  311 (335)
T KOG2922|consen  288 AGELCGFVTIFLGIFLLHRTKDME  311 (335)
T ss_pred             HHHHHhHHHhhheeeEeeeecccc
Confidence             36889999999999886554433

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.62  E-value=1.2e-06  Score=84.74  Aligned_cols=139  Identities=13%  Similarity=0.199  Sum_probs=102.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhC------CCChHHHHHHHHHHHHHHHHHHHHHhhhccC-----------CCCC
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNR------GMSHYVLVVYRHAFATAVIAPFAFFLERKAQ-----------PKIT   75 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~-----------~~~~   75 (409)
                      +..|.++++++.++|+...+..|..+.+      ..++.....+...+++++++|+....+....           ....
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            4679999999999999999999998632      2567767777778888888888764321100           0111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHH
Q 015299           76 FKVFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMI  155 (409)
Q Consensus        76 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~l  155 (409)
                      +......++.+.+...+.+.+.+++++++++...++...+.|+++.++++++++|+++..      +++|.++.++|+.+
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            111111222222222444444557999999999999999999999999999999999999      79999999999988


Q ss_pred             HH
Q 015299          156 MT  157 (409)
Q Consensus       156 i~  157 (409)
                      ..
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            64

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.61  E-value=7.2e-07  Score=70.99  Aligned_cols=70  Identities=17%  Similarity=0.136  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           82 IFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        82 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      ....++++.+++..++.++++..|++.+..+.++.++++.+++++++|||++++      +++|+.+.++|++++.
T Consensus        39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            334444666889999999999999999999999999999999999999999999      7999999999999886

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.52  E-value=1.5e-06  Score=81.80  Aligned_cols=128  Identities=15%  Similarity=0.148  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHH----HHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHA----FATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLG   89 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   89 (409)
                      .+|+++.+++++.|+...+..|..   +.+|...++....    .+.+++.++    + +.++. ..+..+..++.|++.
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~~-~~~~~~~~~~~Gi~~  221 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----I-LAKPL-KKYAILLNILPGLMW  221 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----h-cccch-HHHHHHHHHHHHHHH
Confidence            679999999999999999999986   3788888666655    333333332    1 11222 234455566688884


Q ss_pred             HHHHHHHHHhhhc-ccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchh----hhHHHHHHHHHHHH
Q 015299           90 PVIDQNFYYAGLK-FTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKV----VGTAVTVAGAMIMT  157 (409)
Q Consensus        90 ~~~~~~~~~~al~-~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~----~~~~i~~~Gv~li~  157 (409)
                       .+.+.+|+.+.+ +.+++.+.++.+..|+...+++++++||+.+++      ++    +|.++.+.|+.++.
T Consensus       222 -~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       222 -GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             -HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence             999999999999 999999999999999999999999999999999      69    99999999998875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.51  E-value=4e-06  Score=78.48  Aligned_cols=133  Identities=13%  Similarity=0.224  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVV-YRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVI   92 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~-~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   92 (409)
                      ..|.++.+.++++|+...+..|...  ..++..... +..........+....  ... .....+.+......|+++...
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS--GFG-APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc--ccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999883  566666666 3433222222222211  111 335678899999999999667


Q ss_pred             HHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           93 DQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        93 ~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      .+.+++++++..+++..+++..+.|++..++++++++|+++..      +++|+.+.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999      7999999999998886

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.37  E-value=1.4e-06  Score=69.40  Aligned_cols=67  Identities=13%  Similarity=0.123  Sum_probs=61.3

Q ss_pred             HHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheee
Q 015299          266 AGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       266 ~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~  332 (409)
                      .++++..+++.++..++++.+.+++-.+.++.++++.++++++|||++++.+++|.+++++|++++.
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3445677899999999999999999999999999999999999999999999999999999987654

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.34  E-value=8.3e-06  Score=66.57  Aligned_cols=118  Identities=14%  Similarity=0.207  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHH
Q 015299           15 KPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQ   94 (409)
Q Consensus        15 ~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   94 (409)
                      +++++++++.++-+...++.|... ++.+........  ...+.    . .           .....++..|++..+++.
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~~--~~~~~----~-~-----------~~p~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWDF--IAALL----A-F-----------GLALRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhHH--HHHHH----H-H-----------hccHHHHHHHHHHHHHHH
Confidence            478899999999999999999995 444433322211  00000    0 0           011225677787889999


Q ss_pred             HHHHhhhcccCchhhhhhcchhHHHHHHHHHH--HhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           95 NFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVI--CRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        95 ~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l--~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      .++.++++..+++.+..+.+..++++.+.++.  +++|++++.      +++|+++.++|++++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999889888885  899999999      7999999999999986

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.27  E-value=4.5e-06  Score=75.71  Aligned_cols=139  Identities=14%  Similarity=0.160  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccc-cccchhHHHHHHHHHHH
Q 015299          192 FLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQ-IGWDMNLLAAAYAGIVT  270 (409)
Q Consensus       192 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~  270 (409)
                      ..|+++++.|-+.|+..-.+.|.+ +..  ++.+...+..+.+............+....+. ...+..+......++. 
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~--~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-   81 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLL-EPL--PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-   81 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-ccC--CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-
Confidence            579999999999999998887775 555  88899999998888888777664433222222 2223355556665654 


Q ss_pred             hHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeec
Q 015299          271 SSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       271 ~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~  334 (409)
                      .....+++.++.++.....++.-.+++|.+.+++|.++++|+++..|++..++..+|+....+.
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999998766543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.25  E-value=2.3e-05  Score=69.48  Aligned_cols=139  Identities=12%  Similarity=0.063  Sum_probs=118.4

Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q 015299           10 FLETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLG   89 (409)
Q Consensus        10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   89 (409)
                      .--+..|..+++.+..+|+..-+..|.. .+..+.-.-+..-+.+++++.+|+........  -.++.-...-+..++++
T Consensus       143 ~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~-g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlS  219 (292)
T COG5006         143 WSLDPVGVALALGAGACWALYIVLGQRA-GRAEHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLS  219 (292)
T ss_pred             CcCCHHHHHHHHHHhHHHHHHHHHcchh-cccCCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHh
Confidence            3345689999999999999999999998 44677777888899999999999987543322  23567777788889999


Q ss_pred             HHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           90 PVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        90 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      .++-+.+-..+++.+|.....++.++.|.+.++.++++++|+++..      ||+++...+.+..-..
T Consensus       220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~~  281 (292)
T COG5006         220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGST  281 (292)
T ss_pred             cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999      8999988877766444

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.19  E-value=3e-05  Score=73.64  Aligned_cols=142  Identities=14%  Similarity=0.058  Sum_probs=112.7

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CHHHHHHHHHHHHH
Q 015299           11 LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKI--TFKVFMQIFVLALL   88 (409)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~   88 (409)
                      .+..+|-++++.+++++|..+++-+... ++.+..++...-.+.++++..+.+...+++.....  +++....++..+++
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            3567999999999999999999999985 77899999988888898888887776666543333  44444444444443


Q ss_pred             HHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhc
Q 015299           89 GPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYK  160 (409)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~  160 (409)
                      . +..+.+.-..++.+++....+=.-++.+++++++.+++++++++.      .++|.++.++|.++....+
T Consensus       243 l-f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  243 L-FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             H-HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEccC
Confidence            3 566666677888888888877778899999999999999999998      6999999999999987433

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.98  E-value=0.00013  Score=69.17  Aligned_cols=131  Identities=18%  Similarity=0.124  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHhhhhCCC--chhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHHHHHHHHH
Q 015299          203 LAWASLFVLQTKALETYKNH--QLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGL  280 (409)
Q Consensus       203 ~~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~  280 (409)
                      .++..+.+.++++.++....  +..+++.++....+...+........     ......+...+..++ ...++..+.+.
T Consensus        10 ~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~   83 (303)
T PF08449_consen   10 GGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----KSRKIPLKKYAILSF-LFFLASVLSNA   83 (303)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----CCCcChHHHHHHHHH-HHHHHHHHHHH
Confidence            34445678888888766434  77888888888888777766533311     111123334444454 45678889999


Q ss_pred             HHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecccccc
Q 015299          281 VIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEK  339 (409)
Q Consensus       281 al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~~~  339 (409)
                      ++++.+.....++...+|+..+++++++++++.+..++++.+++.+|+++....+.++.
T Consensus        84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~  142 (303)
T PF08449_consen   84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS  142 (303)
T ss_pred             HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence            99999999999999999999999999999999999999999999999999987755443

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.97  E-value=3.4e-06  Score=75.14  Aligned_cols=138  Identities=17%  Similarity=0.155  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHH
Q 015299          190 DWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIV  269 (409)
Q Consensus       190 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  269 (409)
                      ...+|..+..++ ..+...++..++....   +|.+.....+.+-.+...|..+....  ..+......-|+  +.=|+.
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~--~v~gp~g~R~~L--iLRg~m  106 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQ--PVIGPEGKRKWL--ILRGFM  106 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEee--eeecCCCcEEEE--Eeehhh
Confidence            446788888888 8888888888886654   67777666655555555554442221  112222222232  222332


Q ss_pred             HhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeeccc
Q 015299          270 TSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKH  336 (409)
Q Consensus       270 ~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~  336 (409)
                       +..+.++.++++++.+-+.+.++....|+++++++|++++|+.|.+..+|..+.+.|++++.+..-
T Consensus       107 -G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF  172 (346)
T KOG4510|consen  107 -GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF  172 (346)
T ss_pred             -hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence             345677788999999999999999999999999999999999999999999999999999987544

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.96  E-value=4.8e-05  Score=71.59  Aligned_cols=122  Identities=16%  Similarity=0.240  Sum_probs=89.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHH
Q 015299          189 KDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGI  268 (409)
Q Consensus       189 ~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  268 (409)
                      .+..+|..+++.++++.+....++|+...+.  +....-.                  .. .......+..|+.    |.
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~--~~~~~~~------------------~~-~~~~~l~~~~W~~----G~   57 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRL--PRGSLRA------------------GS-GGRSYLRRPLWWI----GL   57 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccccc------------------cc-hhhHHHhhHHHHH----HH
Confidence            3568999999999999999999999987765  2100000                  00 0000001112222    22


Q ss_pred             HHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecc
Q 015299          269 VTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGK  335 (409)
Q Consensus       269 ~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~  335 (409)
                      +...++..+...++...+++.++++..+..++..+++.++++|+++...++|+++++.|..+.....
T Consensus        58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence            2334566777889999999999999999999999999999999999999999999999987766543

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=97.90  E-value=0.0039  Score=58.47  Aligned_cols=299  Identities=14%  Similarity=0.119  Sum_probs=178.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHh-hhcc----CCCCCHHHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFL-ERKA----QPKITFKVFMQIFVLALL   88 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~-~~~~----~~~~~~~~~~~~~~~g~~   88 (409)
                      ..|+++..+++++-|...+-.|..  ++.+ +|..+.-..+-.-++.|+.... .-+.    ....+........+.|++
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkv--k~Ws-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l   82 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKV--KGWS-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL   82 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhc--CCcc-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence            579999999999999999999998  4443 4444444444444444543321 1111    112344667777778887


Q ss_pred             HHHHHHHHHHhhhcccCchhhh-hhcchhHHHHHHHHHHHhhhhcc-cccccccchhhhHHHHHHHHHHHHHhcCCcccc
Q 015299           89 GPVIDQNFYYAGLKFTSPTFSC-AMSNMLPAMTFVMAVICRMEKIN-MKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVEL  166 (409)
Q Consensus        89 ~~~~~~~~~~~al~~~~~~~~~-ii~~~~pi~~~lls~l~l~e~~~-~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~  166 (409)
                      - .++...|=.+++|+..+..+ +...+..++-.++-.++.++--. ..++-.+.-++|++++++|+.++...+..... 
T Consensus        83 W-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~-  160 (344)
T PF06379_consen   83 W-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK-  160 (344)
T ss_pred             H-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh-
Confidence            5 88999999999999988764 44567777777777776543100 11122344688999999999999854321100 


Q ss_pred             ccccCCCCCCCCCcCcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh------hhhCCCchhH----HHHHHHHHHH
Q 015299          167 FWTQHAHPHDKSDATTSTASSEKDWFLGSIFLIIATLAWASLFVLQTKAL------ETYKNHQLSL----TSLMCFVGTL  236 (409)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~------~~~~~~~~~~----~~~~~~~~~i  236 (409)
                                    +...+..+.+..+|.+.++++++..|..+.-...-.      ...+.+|...    ....+.-+.+
T Consensus       161 --------------~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~  226 (344)
T PF06379_consen  161 --------------ELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFI  226 (344)
T ss_pred             --------------hhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHH
Confidence                          000112345677999999999999999988764321      1111222221    2233333444


Q ss_pred             HHHHHHHHhcC---CCc---cccccc---chhHHHHHHHHHHHhHHHHHHHHHHHhhcCce----EeeechhhHHHHHHH
Q 015299          237 QAIAVTFVIEH---KPS---VWQIGW---DMNLLAAAYAGIVTSSISYFVQGLVIKKRGPV----FATAFSPLMMIIVAI  303 (409)
Q Consensus       237 ~~~~~~~~~~~---~~~---~~~~~~---~~~~~~l~~~g~~~~~~~~~l~~~al~~~~~~----~~s~~~~l~pv~a~l  303 (409)
                      .-+...+....   +..   ++....   ..++...+..|++ -...+++|..+-.+.++.    --.+.+.+..+++-+
T Consensus       227 tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snv  305 (344)
T PF06379_consen  227 TNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNV  305 (344)
T ss_pred             HHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHH
Confidence            44555443221   111   111111   1233333444443 456667777777777743    335677888888999


Q ss_pred             HHHHHhccc------cchhhhhhHHHHHhhhheeee
Q 015299          304 MGSFILAEN------IYLGSVLGAILIVVGLYSVLW  333 (409)
Q Consensus       304 ~~~~~~~e~------~~~~~~iG~~li~~g~~l~~~  333 (409)
                      ++. +++|.      +-..-++|.++++.++.++-+
T Consensus       306 wGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  306 WGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             HHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            988 45552      223458888888888766543

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.84  E-value=0.00028  Score=58.45  Aligned_cols=132  Identities=12%  Similarity=0.145  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHH
Q 015299          194 GSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSI  273 (409)
Q Consensus       194 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  273 (409)
                      ..++++++++.-++....+.++.++. .+|....+..+..+.+.+.....+.++.  .........|+..+ .|+ .+..
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~-gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~-lG~~   76 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKAL-GSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGL-LGVF   76 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHH-HHHH
Confidence            35788999999999999999998887 2499999999999999988887755543  22222222344433 344 3456


Q ss_pred             HHHHHHHHHhhcCceEeeechhh-HHHHHHHHHHH-H---hccccchhhhhhHHHHHhhhhe
Q 015299          274 SYFVQGLVIKKRGPVFATAFSPL-MMIIVAIMGSF-I---LAENIYLGSVLGAILIVVGLYS  330 (409)
Q Consensus       274 ~~~l~~~al~~~~~~~~s~~~~l-~pv~a~l~~~~-~---~~e~~~~~~~iG~~li~~g~~l  330 (409)
                      ...+..+.+++.+++....+... +.+.+.++|.+ +   -++++++.+++|.+++++|+++
T Consensus        77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            67777888999999877665554 78888889987 2   3568899999999999999864

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.84  E-value=4.9e-05  Score=60.89  Aligned_cols=69  Identities=20%  Similarity=0.343  Sum_probs=58.5

Q ss_pred             HHHHhHHHHHHHHHHHhhcCceEeeec-hhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecc
Q 015299          267 GIVTSSISYFVQGLVIKKRGPVFATAF-SPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGK  335 (409)
Q Consensus       267 g~~~~~~~~~l~~~al~~~~~~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~  335 (409)
                      .+++.++++.++..++++.+.+.+=.+ ..+..+.+.+.++++|+|++++.+++|.++|++|++......
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            344557889999999999998776444 568889999999999999999999999999999998886544

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.77  E-value=0.0003  Score=64.32  Aligned_cols=118  Identities=15%  Similarity=0.108  Sum_probs=89.3

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHH
Q 015299           11 LETSKPYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGP   90 (409)
Q Consensus        11 ~~~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   90 (409)
                      .+..+++++++++.+.|....++.|..   +++++...+-..+-..+.-..+....++    +...|..++-++.|++- 
T Consensus       134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~~~----~~~~k~~~~nil~G~~w-  205 (269)
T PF06800_consen  134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFSKK----PFFEKKSWKNILTGLIW-  205 (269)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcccc----cccccchHHhhHHHHHH-
Confidence            345689999999999999999998886   5788777765544333333333333211    12223444556777776 


Q ss_pred             HHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhccccc
Q 015299           91 VIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKK  136 (409)
Q Consensus        91 ~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~  136 (409)
                      ..++.+++.|.+...++.+..+..+..++..+-+.+++||+=+++|
T Consensus       206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke  251 (269)
T PF06800_consen  206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE  251 (269)
T ss_pred             HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence            8999999999999999999999999999999999999999888773

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.60  E-value=0.00096  Score=52.53  Aligned_cols=64  Identities=17%  Similarity=0.161  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHH
Q 015299           87 LLGPVIDQNFYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIM  156 (409)
Q Consensus        87 ~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li  156 (409)
                      +++..++..+...+++++|++.+..+ ....-+.+.+.++++++|++++.      +++++.+.++|++.+
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            33447888889999999999998655 56888999999999999999999      799999999999886

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.60  E-value=0.00013  Score=57.73  Aligned_cols=68  Identities=13%  Similarity=0.268  Sum_probs=57.2

Q ss_pred             HHHhHHHHHHHHHHHhhcCceEee-echhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecc
Q 015299          268 IVTSSISYFVQGLVIKKRGPVFAT-AFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGK  335 (409)
Q Consensus       268 ~~~~~~~~~l~~~al~~~~~~~~s-~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~  335 (409)
                      +++..+++.++..++++.+.+.+= +-.-+..+.+.+.++++|+|++++.+++|.++|++|++..+...
T Consensus        37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            345578889999999999887663 33567888899999999999999999999999999999886543

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.56  E-value=0.0011  Score=51.44  Aligned_cols=66  Identities=18%  Similarity=0.218  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           86 ALLGPVIDQNFYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      .++++.+++.++-.+++++|++.+..+ .....+.+.+.++++++|+++..      +++++.+.++|++.+-
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            344457888899999999999997555 67899999999999999999999      7999999999999875

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.51  E-value=0.00033  Score=65.79  Aligned_cols=138  Identities=13%  Similarity=0.205  Sum_probs=113.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhh---hCCCChHHHHHHHHHHHHHHHH-HHHHHhhhccC----C-CCCHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSL---NRGMSHYVLVVYRHAFATAVIA-PFAFFLERKAQ----P-KITFKVFMQIF   83 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~---~~~~~~~~~~~~r~~~a~i~l~-~~~~~~~~~~~----~-~~~~~~~~~~~   83 (409)
                      +..|...++++.+..+...++.|..+   ...++++....+..-++.+.++ |+....++...    . ..+...+. .+
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLI-LL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHH-HH
Confidence            57899999999999999999999997   3469999999999889998888 88766444322    1 23344333 34


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           84 VLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        84 ~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      ..+++. .+.|...|..+..+++-..++....--+++.+.+++++++++++.      +..|.+++++|+.+-..
T Consensus       240 ~~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  240 LNSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHHH
Confidence            444666 777888899999999999999999999999999999999999999      79999999999998763

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.48  E-value=0.0014  Score=52.60  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           85 LALLGPVIDQNFYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        85 ~g~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      ..++.++++..++..+++++|++.+..+ ....-+.+.+++.++++|++++.      +++|+.+.++|++++-.
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            3455557889999999999999998777 46899999999999999999999      79999999999988853

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.47  E-value=0.0017  Score=53.69  Aligned_cols=130  Identities=9%  Similarity=0.088  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015299           17 YFAMISLQFGYAGMNIITKVSLNRGMS-HYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQN   95 (409)
Q Consensus        17 ~l~~~~~~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (409)
                      +++.+.+..+.+....+.-.+ .+..+ |+..+++-+.++++++..+....+++.....+ +..++...-|+++ +....
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L-~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG-~~~V~   79 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQL-GKALGSPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLG-VFFVL   79 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHH-HHHHH
Confidence            466777778888888876666 35565 99999999999999998888776654322222 2233445578887 88888


Q ss_pred             HHHhhhcccCchhhhhhcchhH-HHHHHHHHH----HhhhhcccccccccchhhhHHHHHHHHHH
Q 015299           96 FYYAGLKFTSPTFSCAMSNMLP-AMTFVMAVI----CRMEKINMKKVRCQAKVVGTAVTVAGAMI  155 (409)
Q Consensus        96 ~~~~al~~~~~~~~~ii~~~~p-i~~~lls~l----~l~e~~~~~~~~~~~~~~~~~i~~~Gv~l  155 (409)
                      +..++...++++.++.+.-+.- +...++..+    .-++++++.      +++|+++.++|+++
T Consensus        80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            8999999999999887765444 444555554    346778877      79999999999864

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.44  E-value=0.0012  Score=52.00  Aligned_cols=63  Identities=10%  Similarity=0.179  Sum_probs=54.8

Q ss_pred             HhHHHHHHHHHHHhhcCceEe-eechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheee
Q 015299          270 TSSISYFVQGLVIKKRGPVFA-TAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       270 ~~~~~~~l~~~al~~~~~~~~-s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~  332 (409)
                      +..+++.+...++|+.+..++ ++-.-+..+.+.+.++++|+|++++.+++|.++|+.|++..+
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            456889999999999988665 566668888999999999999999999999999999998764

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.44  E-value=0.00065  Score=53.71  Aligned_cols=67  Identities=10%  Similarity=0.205  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           86 ALLGPVIDQNFYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      .++++.++..++..+++.+|++.+..+ ..+.-+.+.++++++++|++++.      +++|+.+.++|++++-.
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            445557888888999999999998777 56889999999999999999999      79999999999999863

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.0003  Score=54.49  Aligned_cols=65  Identities=22%  Similarity=0.405  Sum_probs=56.7

Q ss_pred             HhHHHHHHHHHHHhhcCceEe-eechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeec
Q 015299          270 TSSISYFVQGLVIKKRGPVFA-TAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       270 ~~~~~~~l~~~al~~~~~~~~-s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~  334 (409)
                      +..+++.+...++|+.+..++ ++-.-+..+.+.+.++++|+|+.+..+++|.+++++|++..+..
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            346788999999999988654 67777888999999999999999999999999999999887654

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.37  E-value=0.00043  Score=54.19  Aligned_cols=65  Identities=20%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             HHhHHHHHHHHHHHhhcCceEe-eechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeee
Q 015299          269 VTSSISYFVQGLVIKKRGPVFA-TAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLW  333 (409)
Q Consensus       269 ~~~~~~~~l~~~al~~~~~~~~-s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~  333 (409)
                      ++..+++.+...++|+.+...+ ++-.-+..+.+.+.++++|+|++++.+++|.++|++|++..+.
T Consensus        37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            3456889999999999988665 6666688899999999999999999999999999999988754

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.34  E-value=0.00038  Score=54.91  Aligned_cols=110  Identities=13%  Similarity=0.135  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015299           21 ISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAG  100 (409)
Q Consensus        21 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a  100 (409)
                      ++.+++||..+++.|.. +.+.++..-.. |..--...     .           .++|.+. +.-++ +-.+...|++.
T Consensus         2 l~Vg~~WG~Tnpfik~g-~~~~~~~~~~~-~~~~~~~~-----L-----------l~n~~y~-ipf~l-Nq~GSv~f~~~   61 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRG-SSGLEKVKASL-QLLQEIKF-----L-----------LLNPKYI-IPFLL-NQSGSVLFFLL   61 (113)
T ss_pred             eeehHHhcCchHHHHHH-HhhcCCccchH-HHHHHHHH-----H-----------HHhHHHH-HHHHH-HHHHHHHHHHH
Confidence            35678999999999999 45555544331 21111111     0           1122222 22233 36677889999


Q ss_pred             hcccCchhhhhhc-chhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHH
Q 015299          101 LKFTSPTFSCAMS-NMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIM  156 (409)
Q Consensus       101 l~~~~~~~~~ii~-~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li  156 (409)
                      +...+.+.+.++. +++=+||++.++++.+|..+++      .++|+++.++|+.++
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            9999999999995 8899999999988877777777      599999999998764

Many members are annotated as potential transmembrane proteins.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.28  E-value=0.0029  Score=52.41  Aligned_cols=139  Identities=14%  Similarity=0.131  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHh
Q 015299          192 FLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTS  271 (409)
Q Consensus       192 ~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  271 (409)
                      .+..+.+++++++-.+......++.+.. .+|.......+.++++.+..+.++.++ ...+.......|+..+. |++ .
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~-~spl~As~isf~vGt~~L~~l~l~~~~-~~~~a~~~~~pwW~~~G-G~l-G   79 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYL-GSPLLASLISFLVGTVLLLILLLIKQG-HPGLAAVASAPWWAWIG-GLL-G   79 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhccCCchHHHHc-cch-h
Confidence            5678889999999999999999988777 468888888888988888887775333 23333223334544432 333 3


Q ss_pred             HHHHHHHHHHHhhcCceE-eeechhhHHHHHHHHHHHHhc----cccchhhhhhHHHHHhhhheeeec
Q 015299          272 SISYFVQGLVIKKRGPVF-ATAFSPLMMIIVAIMGSFILA----ENIYLGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       272 ~~~~~l~~~al~~~~~~~-~s~~~~l~pv~a~l~~~~~~~----e~~~~~~~iG~~li~~g~~l~~~~  334 (409)
                      .+.-........+.+++. ......-+.+.++++|.+=+.    .+++...++|.+++++|+++..+.
T Consensus        80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~  147 (150)
T COG3238          80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF  147 (150)
T ss_pred             hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence            343444455566666644 445555688888888887553    578999999999999996655443

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=97.23  E-value=0.0024  Score=60.14  Aligned_cols=141  Identities=12%  Similarity=0.169  Sum_probs=115.0

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHhhh-C--CCChHHHHHHHHHHHHHHHHHHHHHhhh---ccCCCCCHHHHHHHHHH
Q 015299           12 ETSKPYFAMISLQFGYAGMNIITKVSLN-R--GMSHYVLVVYRHAFATAVIAPFAFFLER---KAQPKITFKVFMQIFVL   85 (409)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~~-~--~~~~~~~~~~r~~~a~i~l~~~~~~~~~---~~~~~~~~~~~~~~~~~   85 (409)
                      +...|-+++++++++||...++.|.-.. +  .++--.+.-+-.++..++++|..+....   ....-++..+...++..
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            4478999999999999999999998762 2  4666666677778888888876554332   23333455667778888


Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           86 ALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      ++++.+++.++|.+|.-.+++-.+++-.+++....++.-.++.+.++++.      +++|.+..++|-+++..
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence            99999999999999999999999999988888888888988889989988      89999999999998874

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.23  E-value=0.0046  Score=48.39  Aligned_cols=65  Identities=11%  Similarity=0.116  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           87 LLGPVIDQNFYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        87 ~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      ++++..+..+...+++.+|.+.+..+ .....+.+.++++++++|++++.      +++++.+.++|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            44457888899999999999998665 56899999999999999999999      7999999999999874

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=97.14  E-value=0.0067  Score=55.30  Aligned_cols=192  Identities=13%  Similarity=0.068  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015299           16 PYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQN   95 (409)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (409)
                      |++..+.+.+++|.+++-.|..  +.-+++.+-++-+...++.-+.+..+.+.   ++    -+.+..+-|.+ .+.++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~---p~----f~p~amlgG~l-W~~gN~   70 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGF---PP----FYPWAMLGGAL-WATGNI   70 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCC---Cc----ceeHHHhhhhh-hhcCce
Confidence            5778999999999999999988  45577777766666555555554444221   22    23334445555 488899


Q ss_pred             HHHhhhcccCchhhhhhcchhHHHH-HHHHHH-HhhhhcccccccccchhhhHHHHHHHHHHHHHhcCCcccc-------
Q 015299           96 FYYAGLKFTSPTFSCAMSNMLPAMT-FVMAVI-CRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYKGPIVEL-------  166 (409)
Q Consensus        96 ~~~~al~~~~~~~~~ii~~~~pi~~-~lls~l-~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~-------  166 (409)
                      +-.-.++.+.++....+-++.-+.+ -..+.+ +++++...- .-....++|++++++|..+...-+.+....       
T Consensus        71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~  149 (254)
T PF07857_consen   71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEET  149 (254)
T ss_pred             eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCcccccccc
Confidence            9999999999999988866544333 233322 233322211 111224678888888887776533222110       


Q ss_pred             --ccccCCCCCCCCCcCcCCC-----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015299          167 --FWTQHAHPHDKSDATTSTA-----SSEKDWFLGSIFLIIATLAWASLFVLQTKALET  218 (409)
Q Consensus       167 --~~~~~~~~~~~~~~~~~~~-----~~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~  218 (409)
                        ..++.++..++...+.+.+     ....+...|..+++++++.|+...+=.....++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  150 PLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             ccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence              0000000000000000000     112247789999999999999988776665444

The region concerned is approximately 280 residues long.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.11  E-value=0.003  Score=60.20  Aligned_cols=138  Identities=15%  Similarity=0.200  Sum_probs=91.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHH--HHH--HHHHhcCCC-cccccccchhHHHHH
Q 015299          190 DWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQ--AIA--VTFVIEHKP-SVWQIGWDMNLLAAA  264 (409)
Q Consensus       190 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~--~~~~~~~~~-~~~~~~~~~~~~~l~  264 (409)
                      +...|+++++++++|++.+.+-+|+ .|+.  +-..+  |- ..+.+.  +.|  ...+..++. ......+...+....
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w--~wE~~--W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKW--SWETM--WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCC--chhHH--HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence            3578999999999999999999888 5555  32222  22 121111  111  111111111 112222333444445


Q ss_pred             HHHHHHhHHHHHHHHHHHhhcCceEeeech-hhHHHHHHHHHHHHhcccc---c----hhhhhhHHHHHhhhheeeec
Q 015299          265 YAGIVTSSISYFVQGLVIKKRGPVFATAFS-PLMMIIVAIMGSFILAENI---Y----LGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       265 ~~g~~~~~~~~~l~~~al~~~~~~~~s~~~-~l~pv~a~l~~~~~~~e~~---~----~~~~iG~~li~~g~~l~~~~  334 (409)
                      ..|++ -.+++..+..++++.+.+...++. -++.+.+.+++.+++||..   +    ...++|.+++++|+++..+.
T Consensus        78 l~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A  154 (345)
T PRK13499         78 LFGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA  154 (345)
T ss_pred             HHHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            55654 568999999999999998876554 5688999999999999765   2    24688999999999988773

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=97.00  E-value=0.002  Score=58.89  Aligned_cols=78  Identities=17%  Similarity=0.212  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeeccccc
Q 015299          260 LLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKE  338 (409)
Q Consensus       260 ~~~l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~~  338 (409)
                      .+.+..-+++ ..+...+.+.++++.+|++..++..+++++++++++++++.+++..||++..+.++|+.++.......
T Consensus        17 ~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~   94 (244)
T PF04142_consen   17 TLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS   94 (244)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence            3444444443 56778888999999999999999999999999999999999999999999999999999988765544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.00028  Score=65.06  Aligned_cols=128  Identities=23%  Similarity=0.307  Sum_probs=96.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHH
Q 015299          187 SEKDWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYA  266 (409)
Q Consensus       187 ~~~~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  266 (409)
                      ...++.+|.++++.+++..+...++.||..++.  ..                 ... ...+ ........    ...+.
T Consensus        15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~--~~-----------------~~~-ra~~-gg~~yl~~----~~Ww~   69 (335)
T KOG2922|consen   15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRA--GA-----------------SGL-RAGE-GGYGYLKE----PLWWA   69 (335)
T ss_pred             hccCceeeeeehhhccEEEeeehhhhHHHHHHH--hh-----------------hcc-cccC-CCcchhhh----HHHHH
Confidence            345667999999999999999999999888776  11                 010 1011 11111111    12234


Q ss_pred             HHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecccccc
Q 015299          267 GIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKEK  339 (409)
Q Consensus       267 g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~~~  339 (409)
                      |.+...++..+.+.+....+++.++++..++.+.+++++..+++|++++...+|+++.++|..++.....+++
T Consensus        70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~  142 (335)
T KOG2922|consen   70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ  142 (335)
T ss_pred             HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence            5556677888888888999999999999999999999999999999999999999999999887776554443

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.87  E-value=0.0014  Score=59.77  Aligned_cols=134  Identities=20%  Similarity=0.187  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHH
Q 015299          194 GSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSI  273 (409)
Q Consensus       194 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  273 (409)
                      |.+.++.|+++++.+.+=.||. ...  |++....+++....+....+.++.+.  +.+   .   .+.++. |. .-+.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~--p~f---~---p~amlg-G~-lW~~   67 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DTG--DGFFFQWVMCSGIFLVGLVVNLILGF--PPF---Y---PWAMLG-GA-LWAT   67 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cCC--CcHHHHHHHHHHHHHHHHHHHHhcCC--Ccc---e---eHHHhh-hh-hhhc
Confidence            5678899999999999887764 333  77666666665555555555543221  111   0   111111 11 1233


Q ss_pred             HHHHHHHHHhhcCceEeeec-hhhHHHHHHHHHHH-Hhcccc-----chhhhhhHHHHHhhhheeeeccccccc
Q 015299          274 SYFVQGLVIKKRGPVFATAF-SPLMMIIVAIMGSF-ILAENI-----YLGSVLGAILIVVGLYSVLWGKHKEKM  340 (409)
Q Consensus       274 ~~~l~~~al~~~~~~~~s~~-~~l~pv~a~l~~~~-~~~e~~-----~~~~~iG~~li~~g~~l~~~~~~~~~~  340 (409)
                      +..+-.-++|..+-...-.+ ...+.+.+...+-+ +||+.+     .+..++|.+++++|..++..-|.+.++
T Consensus        68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~  141 (254)
T PF07857_consen   68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKE  141 (254)
T ss_pred             CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCC
Confidence            44444445555554333222 23456666666654 555433     356899999999999888877665543

The region concerned is approximately 280 residues long.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.83  E-value=0.0022  Score=49.26  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=34.3

Q ss_pred             HhHHHHHHHHHHHhhcCceEe-eechhhHHHHHHHHHHHHhccccchhhhhhHHHH
Q 015299          270 TSSISYFVQGLVIKKRGPVFA-TAFSPLMMIIVAIMGSFILAENIYLGSVLGAILI  324 (409)
Q Consensus       270 ~~~~~~~l~~~al~~~~~~~~-s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li  324 (409)
                      +..+++.++..++|+.+.+.+ ++...+..+...+.|+++|||++|+.+++|..+|
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            556888999999999999888 4556689999999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.82  E-value=0.014  Score=46.06  Aligned_cols=109  Identities=13%  Similarity=0.184  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHHHHHHHH
Q 015299          200 IATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQG  279 (409)
Q Consensus       200 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~  279 (409)
                      +.++.|++.+-+.||..+..  ++..-.. + ...-...   .+              ..|-+++  .......+..+|+
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~--~~~~~~~-~-~~~~~~~---Ll--------------~n~~y~i--pf~lNq~GSv~f~   59 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGL--EKVKASL-Q-LLQEIKF---LL--------------LNPKYII--PFLLNQSGSVLFF   59 (113)
T ss_pred             eehHHhcCchHHHHHHHhhc--CCccchH-H-HHHHHHH---HH--------------HhHHHHH--HHHHHHHHHHHHH
Confidence            45788999999999988776  3222221 1 1111111   11              0122222  2223456667888


Q ss_pred             HHHhhcCceEeeec-hhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhhee
Q 015299          280 LVIKKRGPVFATAF-SPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSV  331 (409)
Q Consensus       280 ~al~~~~~~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~  331 (409)
                      +.+.+.+-+.+.++ +.+.-+++++.++++.+|..+...++|+++|++|+.+.
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            89999999999998 48999999999998888888889999999999998764

Many members are annotated as potential transmembrane proteins.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.68  E-value=0.023  Score=52.27  Aligned_cols=141  Identities=10%  Similarity=0.116  Sum_probs=114.3

Q ss_pred             chhchHHHHHHHHHHHHHHHHHHHHHHhh-hCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCC-----CCCHHHHHHHH
Q 015299           10 FLETSKPYFAMISLQFGYAGMNIITKVSL-NRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQP-----KITFKVFMQIF   83 (409)
Q Consensus        10 ~~~~~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~-----~~~~~~~~~~~   83 (409)
                      ..+...|++++....++=|+.+..-..++ ...++++.+.+.-.+..++........+ ...++     +.++..++-++
T Consensus       167 ~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~q-g~~~~av~F~~~hp~~~~Di~  245 (327)
T KOG1581|consen  167 RENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQ-GHLLPAVSFIKEHPDVAFDIL  245 (327)
T ss_pred             CCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHcChhHHHHHH
Confidence            45677899999999999999988877776 4568999999998888888777764332 22222     23556788889


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           84 VLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        84 ~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      +.+.++ +.++.+.++-++.-++-.-+.|.-+=-+++++++.+.++.+++..      |++|+.+.+.|+.+=.+
T Consensus       246 l~s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  246 LYSTCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHHHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence            999998 888999888888877777777888888999999999999999999      89999999999877553

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.62  E-value=0.002  Score=57.21  Aligned_cols=135  Identities=19%  Similarity=0.195  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHhHH
Q 015299          194 GSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSI  273 (409)
Q Consensus       194 G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  273 (409)
                      +.+.+++=++.|+..-....|.    +..|.+-+.-+.+.+.++.+.+.++ ..  +..   +...+..-+..|.+ -.+
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~----GG~p~qQ~lGtT~GALifaiiv~~~-~~--p~~---T~~~~iv~~isG~~-Ws~   71 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF----GGKPYQQTLGTTLGALIFAIIVFLF-VS--PEL---TLTIFIVGFISGAF-WSF   71 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec----CCChhHhhhhccHHHHHHHHHHhee-ec--Ccc---chhhHHHHHHhhhH-hhh
Confidence            5678888999999877764443    2356666666565555555554442 21  111   11234444455554 458


Q ss_pred             HHHHHHHHHhhcCceEeeechh-hHHHHHHHHHHHHhccccchhh----hhhHHHHHhhhheeeecccccc
Q 015299          274 SYFVQGLVIKKRGPVFATAFSP-LMMIIVAIMGSFILAENIYLGS----VLGAILIVVGLYSVLWGKHKEK  339 (409)
Q Consensus       274 ~~~l~~~al~~~~~~~~s~~~~-l~pv~a~l~~~~~~~e~~~~~~----~iG~~li~~g~~l~~~~~~~~~  339 (409)
                      ++..++.+++..+.+++.++.. .+.+-+.+++++.|||..+..+    .+..+++++|+++..+.++.++
T Consensus        72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk  142 (288)
T COG4975          72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK  142 (288)
T ss_pred             hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc
Confidence            9999999999999999998876 5778889999999999998765    4456788899998887765433

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.53  E-value=0.045  Score=45.47  Aligned_cols=136  Identities=11%  Similarity=0.022  Sum_probs=89.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNRGM-SHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPV   91 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   91 (409)
                      ....+++.+.+..+......+.-.+ .+.. +|....+.-+.++.+++..+.+..+++......++..++.+.-|++| +
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL-~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a   80 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRL-ARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-A   80 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-h
Confidence            4566777788888888887776665 3444 48999999999999888888777433322222234455566677777 6


Q ss_pred             HHHHHHHhhhcccCchhhhhhc-chhHHHHHHHHHHHh----hhhcccccccccchhhhHHHHHHHHHHH
Q 015299           92 IDQNFYYAGLKFTSPTFSCAMS-NMLPAMTFVMAVICR----MEKINMKKVRCQAKVVGTAVTVAGAMIM  156 (409)
Q Consensus        92 ~~~~~~~~al~~~~~~~~~ii~-~~~pi~~~lls~l~l----~e~~~~~~~~~~~~~~~~~i~~~Gv~li  156 (409)
                      ..-.........+.++....+. .-+-+..+++..+=.    +.+++..      +++|+++.++|+.++
T Consensus        81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~  144 (150)
T COG3238          81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA  144 (150)
T ss_pred             hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence            6666667777777776665553 344444444443322    3555555      799999999995544

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.38  E-value=0.028  Score=43.08  Aligned_cols=57  Identities=18%  Similarity=0.181  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHH
Q 015299           86 ALLGPVIDQNFYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAV  148 (409)
Q Consensus        86 g~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i  148 (409)
                      .+.++.++..++..+++++|.+.+..+ ..+..+.+.+++.++++|+++..      |++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            344557888999999999999999666 46999999999999999999999      6888764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=96.17  E-value=0.14  Score=48.45  Aligned_cols=142  Identities=14%  Similarity=0.090  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhCC--CchhHHHHHHHHHHHHHHHHHHHhcCC---C-----cccccccchhHHH
Q 015299          193 LGSIFLIIATLAWASLFVLQTKALETYKN--HQLSLTSLMCFVGTLQAIAVTFVIEHK---P-----SVWQIGWDMNLLA  262 (409)
Q Consensus       193 ~G~~~~l~aa~~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-----~~~~~~~~~~~~~  262 (409)
                      .=.+..+...+.++......|...++.|+  .|.+.++..-+.-.+++....+..++.   .     ..+....+...+-
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            33455555556666666666655443322  566777777777777777776643211   0     0001111112222


Q ss_pred             HHHHHHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecc
Q 015299          263 AAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGK  335 (409)
Q Consensus       263 l~~~g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~  335 (409)
                      +..-++ ..++-+.+++.++.+.+|++..+...++++.+.++..++++++++..||...++.+.|+.++....
T Consensus        95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~  166 (345)
T KOG2234|consen   95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS  166 (345)
T ss_pred             HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence            222222 234556688899999999999999999999999999999999999999999999999999988443

>TIGR00803 nst UDP-galactose transporter

Probab=95.93  E-value=0.026  Score=50.77  Aligned_cols=58  Identities=10%  Similarity=0.039  Sum_probs=52.3

Q ss_pred             HHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHH
Q 015299           91 VIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAM  154 (409)
Q Consensus        91 ~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~  154 (409)
                      +....+..+.+++.+....+....+.++++.+++.++++|+++..      +++|+.+.+.|+.
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            666777889999999999999999999999999999999999999      7999999888764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=0.18  Score=47.01  Aligned_cols=138  Identities=12%  Similarity=0.171  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh-hCCCChHHHHHHHHHHHHHHHHHHHHHhhhc-----cCC-CCCHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSL-NRGMSHYVLVVYRHAFATAVIAPFAFFLERK-----AQP-KITFKVFMQIFVLA   86 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~-----~~~-~~~~~~~~~~~~~g   86 (409)
                      ..|+.++....+.-+...+..|... +.+.+-+.++++..+...+.+....+..+..     ..+ ......+..+.+.+
T Consensus       156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            4588899999998889999999886 4568888999999999988887776554321     111 11234466677788


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           87 LLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        87 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      +++ .+-+++.+++.+..++...++.....-..+.+-..++.+++.++.      ..+|+.++++|.++-..
T Consensus       236 v~g-f~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~~  300 (314)
T KOG1444|consen  236 VMG-FGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYSY  300 (314)
T ss_pred             HHH-HHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHhh
Confidence            887 777788899999999998888886666667777777778888888      69999999999988763

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.91  E-value=0.049  Score=46.86  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecc
Q 015299          273 ISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGK  335 (409)
Q Consensus       273 ~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~  335 (409)
                      .+..+|..++++.+|+.++.+...+..+..+++++++|+++...+++..++.+.|++++.+..
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D  127 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD  127 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence            457788999999999999999999999999999999999999999999999999999887654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.38  E-value=0.77  Score=40.87  Aligned_cols=137  Identities=12%  Similarity=0.088  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh-hCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC-----CCCCHHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSL-NRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ-----PKITFKVFMQIFVLAL   87 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~   87 (409)
                      ..|-++++++..+-|.....-...- +..-+...+.+.-.+-+.+.+..-+++.+. .|     .......|+.+..+++
T Consensus       171 g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE-lweF~yF~~RhP~~~~~l~l~ai  249 (337)
T KOG1580|consen  171 GFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE-LWEFFYFVQRHPYVFWDLTLLAI  249 (337)
T ss_pred             chHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh-HHHHHHHHHhccHHHHHHHHHHH
Confidence            4577888888888777776643321 112233344444444444443332222110 00     0011245777888899


Q ss_pred             HHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           88 LGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      ++ ++++.+.|.-+.+-++-.-+++..+--+|+++.+.++++.+++.+      ||+|..+.+.|...=..
T Consensus       250 ~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~~  313 (337)
T KOG1580|consen  250 AS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADVV  313 (337)
T ss_pred             HH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHhh
Confidence            88 999999999999988888899999999999999999999999999      89999999998877553

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=93.32  E-value=0.49  Score=41.77  Aligned_cols=136  Identities=13%  Similarity=0.193  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-hCCCChHHHHHHHHHHHHHHHHHHHHHhhhccC----CCCCHHHHHHHHHHHHHHH
Q 015299           16 PYFAMISLQFGYAGMNIITKVSL-NRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQ----PKITFKVFMQIFVLALLGP   90 (409)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~   90 (409)
                      |++.+....+.-+..-...|.-. -.....++.+++..+++..+++.+.+..+....    ..++.....+.++.|++. 
T Consensus       156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-  234 (309)
T COG5070         156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-  234 (309)
T ss_pred             ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-
Confidence            44555444444444444444432 145778889999999999998888766543221    123444556777888887 


Q ss_pred             HHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           91 VIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        91 ~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      ++-.++.-|+++-++.+..+.+..+.-.-..+-+.++++|+.++.      .+.++++++...++-..
T Consensus       235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYav  296 (309)
T COG5070         235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV  296 (309)
T ss_pred             hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence            777778899999999999999999998889999999999999999      69999999877776654

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=92.43  E-value=0.55  Score=44.39  Aligned_cols=142  Identities=15%  Similarity=0.137  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHHh-c-CCC-cccccccchhHHHHHHH
Q 015299          190 DWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVI-E-HKP-SVWQIGWDMNLLAAAYA  266 (409)
Q Consensus       190 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~-~~~~~~~~~~~~~l~~~  266 (409)
                      +..+|+++-.+++++.+.+.+=.||. |+.  +....=..+.+++-++ .|....+ . ++. ......+...+......
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~W--sWEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~   79 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGW--SWESYWLVQGIFSWLI-VPWLWALLAIPDFFSIYSATPASTLFWTFLF   79 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCc--cHHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence            45799999999999999999998874 554  4444333344343333 3333222 1 111 11122222244455555


Q ss_pred             HHHHhHHHHHHHHHHHhhcCceEe-eechhhHHHHHHHHHHHHhcc-------ccchhhhhhHHHHHhhhheeeeccc
Q 015299          267 GIVTSSISYFVQGLVIKKRGPVFA-TAFSPLMMIIVAIMGSFILAE-------NIYLGSVLGAILIVVGLYSVLWGKH  336 (409)
Q Consensus       267 g~~~~~~~~~l~~~al~~~~~~~~-s~~~~l~pv~a~l~~~~~~~e-------~~~~~~~iG~~li~~g~~l~~~~~~  336 (409)
                      |++ -.++-..|-.++|+++.+.. ++..-+..+++.++--++.|+       +-....++|.++.++|+.+..+.-.
T Consensus        80 G~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~  156 (344)
T PF06379_consen   80 GVL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS  156 (344)
T ss_pred             HHH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence            664 45777888889999987543 444445555555555544332       2234679999999999988876533

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=92.16  E-value=0.26  Score=37.85  Aligned_cols=112  Identities=13%  Similarity=0.217  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCCCh------HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 015299           18 FAMISLQFGYAGMNIITKVSLNRGMSH------YVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPV   91 (409)
Q Consensus        18 l~~~~~~~~~~~~~~~~k~~~~~~~~~------~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   91 (409)
                      .-++...++||..+.+.|.. +.+.+.      ....+.|-.....                +.|+++    ..-+++ -
T Consensus         6 ~~lvaVgllWG~Tnplirrg-s~g~~~v~~~~~k~~~~lqe~~tl~----------------l~w~Y~----iPFllN-q   63 (125)
T KOG4831|consen    6 DKLVAVGLLWGATNPLIRRG-SLGWDKVKSSSRKIMIALQEMKTLF----------------LNWEYL----IPFLLN-Q   63 (125)
T ss_pred             HHHHHHHHHHccccHHHHHH-HhhHhhccCchHHHHHHHHHHHHHH----------------HhHHHH----HHHHHH-H
Confidence            45677889999999999998 443322      2222222211111                122222    222333 4


Q ss_pred             HHHHHHHhhhcccCchhhhhhc-chhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHH
Q 015299           92 IDQNFYYAGLKFTSPTFSCAMS-NMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMT  157 (409)
Q Consensus        92 ~~~~~~~~al~~~~~~~~~ii~-~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~  157 (409)
                      .+..+||+-++..+.+.+..+. +++-.|+.+.+.. ++|+...+.     .++|+.+.++|+.+++
T Consensus        64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~-----a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGL-----ALLGTSLIVFGIWLCI  124 (125)
T ss_pred             hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccce-----eehhhhHHhhhhhhee
Confidence            4567889999999999998885 5677788888866 556555443     7889999999988764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=91.64  E-value=4  Score=37.99  Aligned_cols=137  Identities=14%  Similarity=0.135  Sum_probs=90.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhC----CCChHHHHHHHHHHHHHHHHHHHHHhhhccCC-------CCC----HH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLNR----GMSHYVLVVYRHAFATAVIAPFAFFLERKAQP-------KIT----FK   77 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~~----~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~-------~~~----~~   77 (409)
                      +..|.++...++.+-|+-+.++++.+.+    .-+|+...+.-.-...+.++|..+..++....       ..+    ++
T Consensus       162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r  241 (349)
T KOG1443|consen  162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR  241 (349)
T ss_pred             eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence            5679999999999999999999998732    23577777666666666777766554432211       111    12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHH
Q 015299           78 VFMQIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIM  156 (409)
Q Consensus        78 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li  156 (409)
                      ....+.+.|... ++.-..-+.=+..++.-..++..-..=+.+.+++.++++++++..      -|.|..++..|+.+=
T Consensus       242 v~g~i~l~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  242 VIGLISLGGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence            222233333333 222222243445555555555555667789999999999999988      699999999999886

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.39  E-value=1.1  Score=40.94  Aligned_cols=138  Identities=11%  Similarity=0.108  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh-hCCCChHHHHHHHHHHHHHHHHHHHHHhhhcc--C---CCCCHHHHHHHHHHHH
Q 015299           14 SKPYFAMISLQFGYAGMNIITKVSL-NRGMSHYVLVVYRHAFATAVIAPFAFFLERKA--Q---PKITFKVFMQIFVLAL   87 (409)
Q Consensus        14 ~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~g~   87 (409)
                      ..|+.++-.+.++-+.-.-+-...+ ...-+..+++++-+.++++++...+.....-.  +   .+-+++.+.+.++.+.
T Consensus       189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~  268 (367)
T KOG1582|consen  189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL  268 (367)
T ss_pred             eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence            4566555555555555444433333 23456688999999999988888776543211  1   1235677777777777


Q ss_pred             HHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           88 LGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        88 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      .+ .++..+...=++.-++..+..+...--..|.+++++++.+++|.+      -.-+..+.+.|+.+=..
T Consensus       269 ~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y  332 (367)
T KOG1582|consen  269 AG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY  332 (367)
T ss_pred             Hh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence            77 555555544455556777777777777889999999999999998      36677778888888764

>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines

Probab=89.23  E-value=25  Score=35.00  Aligned_cols=59  Identities=10%  Similarity=0.059  Sum_probs=34.1

Q ss_pred             HHHHhHHHHHHHHHHHhhcCceEeeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeeccccc
Q 015299          267 GIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKHKE  338 (409)
Q Consensus       267 g~~~~~~~~~l~~~al~~~~~~~~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~~~  338 (409)
                      ++++....|..| .|+...+...-+..            -.--+..-+...++|.++.++.+.....+...+
T Consensus       250 svv~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~ra~~~  308 (429)
T PF03348_consen  250 SVVSLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFRASSS  308 (429)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhccccccc
Confidence            444434445554 56776664444444            001233456678999999999987776654433

The function of these proteins is unknown. ; GO: 0016020 membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.73  E-value=1.3  Score=40.56  Aligned_cols=141  Identities=20%  Similarity=0.144  Sum_probs=98.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhh-CCCChHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCC-CHHHHHHHHHHH
Q 015299           13 TSKPYFAMISLQFGYAGMNIITKVSLN-RGMSHYVLVVYRHAFATAVIAPFAFFLER----KAQPKI-TFKVFMQIFVLA   86 (409)
Q Consensus        13 ~~~g~l~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~a~i~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~g   86 (409)
                      ...|.++.+.+++.-+...+.+|..+. .+=--+.++++..+.+.++++|.....+.    ...+.. .++.|..+.+.|
T Consensus       183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg  262 (347)
T KOG1442|consen  183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG  262 (347)
T ss_pred             chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence            357999999999999999999998752 22335778888999999999998876433    122233 567777777788


Q ss_pred             HHHHHHHHHHHHhhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHHhc
Q 015299           87 LLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTLYK  160 (409)
Q Consensus        87 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~~~  160 (409)
                      ++| +.-++.-.+=++.+++-...+-...-...=.+++..+++|..+..      .|-+.++.++|-..-...+
T Consensus       263 lfg-F~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~vk  329 (347)
T KOG1442|consen  263 LFG-FAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTLVK  329 (347)
T ss_pred             HHH-HHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHHHH
Confidence            877 333333344555565544443333444555788999999988887      5888888888888777543

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=88.11  E-value=7.5  Score=35.83  Aligned_cols=140  Identities=14%  Similarity=0.191  Sum_probs=93.8

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHhh-hCCCChHHHHHHHHHHHHHHHHHHHHH----hhh-c--cCCCCCHHHHHHH-
Q 015299           12 ETSKPYFAMISLQFGYAGMNIITKVSL-NRGMSHYVLVVYRHAFATAVIAPFAFF----LER-K--AQPKITFKVFMQI-   82 (409)
Q Consensus        12 ~~~~g~l~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~a~i~l~~~~~~----~~~-~--~~~~~~~~~~~~~-   82 (409)
                      +-..|-++.+++.++.+...++=...+ ..+++|.+.+.+..+.+..++..++..    .-. .  .-++-.+.+|... 
T Consensus       173 ~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~  252 (372)
T KOG3912|consen  173 SIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAF  252 (372)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHH
Confidence            446799999999999999999965544 467999999999998886555443322    111 0  1112223444332 


Q ss_pred             --------HHHHHHHHHHHHHHHH----hhhcccCchhhhhhcchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHH
Q 015299           83 --------FVLALLGPVIDQNFYY----AGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTV  150 (409)
Q Consensus        83 --------~~~g~~~~~~~~~~~~----~al~~~~~~~~~ii~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~  150 (409)
                              +...+.+...+..+|+    +--++.++++=.++-.+-..++=+++.....|+++..      |+.|.++.+
T Consensus       253 ~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi  326 (372)
T KOG3912|consen  253 AALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILI  326 (372)
T ss_pred             HHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHH
Confidence                    2333333333333332    2234556677777777777888888888999999999      799999999


Q ss_pred             HHHHHHH
Q 015299          151 AGAMIMT  157 (409)
Q Consensus       151 ~Gv~li~  157 (409)
                      .|..+--
T Consensus       327 ~Gi~lY~  333 (372)
T KOG3912|consen  327 MGIILYN  333 (372)
T ss_pred             HHHHHHH
Confidence            9988753

>PRK02237 hypothetical protein; Provisional

Probab=86.97  E-value=1.8  Score=33.55  Aligned_cols=46  Identities=11%  Similarity=0.096  Sum_probs=39.9

Q ss_pred             eeechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeecc
Q 015299          290 ATAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGK  335 (409)
Q Consensus       290 ~s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~  335 (409)
                      .+...-+-++.++++++.+-|.+|+.+.++|.++.++|+.++.+..
T Consensus        62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p  107 (109)
T PRK02237         62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP  107 (109)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence            3567777888999999999999999999999999999987776554

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=86.49  E-value=0.26  Score=45.54  Aligned_cols=130  Identities=16%  Similarity=0.089  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhCCCchhHHHHHHHHHHHHHHHHHHH-hcCC------Ccc----cccccchhHHHHHHHH
Q 015299          199 IIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFV-IEHK------PSV----WQIGWDMNLLAAAYAG  267 (409)
Q Consensus       199 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~------~~~----~~~~~~~~~~~l~~~g  267 (409)
                      +++.+||+-.-..+|...|+.+.+  +.+.+=+.++.++...+..+ +...      .+.    ....+...+......|
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR~~--qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG   79 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGRLP--QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG   79 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCCcc--ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence            456778888888888776655212  12333333333333222221 1110      111    1111222333334444


Q ss_pred             HHHhHHHHHHHHHHHhhcCceEeeechh-hHHHHHHHHHHHHhccccc--hhhhhhHHHHHhhhheee
Q 015299          268 IVTSSISYFVQGLVIKKRGPVFATAFSP-LMMIIVAIMGSFILAENIY--LGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       268 ~~~~~~~~~l~~~al~~~~~~~~s~~~~-l~pv~a~l~~~~~~~e~~~--~~~~iG~~li~~g~~l~~  332 (409)
                      ++ --++.++..+++...+.+..-++.. +..+.+.++.++ ++.+.+  ..-+.|.+++++++++-.
T Consensus        80 vv-fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga  145 (336)
T PF07168_consen   80 VV-FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA  145 (336)
T ss_pred             Hh-hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence            44 4588899999999888877665542 233344444443 344443  245668877777766543

Transport is dependent on glucose and a proton gradient [].

>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4)

Probab=84.07  E-value=0.32  Score=44.24  Aligned_cols=50  Identities=0%  Similarity=0.012  Sum_probs=0.0

Q ss_pred             hcccCchhhhhhcchhHHHHHHH--HHHHhhhhcccccccccchhhhHHHHHHHHHHH
Q 015299          101 LKFTSPTFSCAMSNMLPAMTFVM--AVICRMEKINMKKVRCQAKVVGTAVTVAGAMIM  156 (409)
Q Consensus       101 l~~~~~~~~~ii~~~~pi~~~ll--s~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li  156 (409)
                      ++-.+-+-.+++++.+.+.++|+  -.+|.|+-+-+.      ..+++++.++-..+.
T Consensus        44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPL------GlLCiilimi~lLv~   95 (381)
T PF05297_consen   44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPL------GLLCIILIMIVLLVS   95 (381)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcc------hHHHHHHHHHHHHHH
Confidence            33344455566665554444333  333344444445      466655554444433

LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=83.54  E-value=57  Score=33.50  Aligned_cols=29  Identities=7%  Similarity=-0.043  Sum_probs=13.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015299          190 DWFLGSIFLIIATLAWASLFVLQTKALETY  219 (409)
Q Consensus       190 ~~~~G~~~~l~aa~~~a~~~v~~~~~~~~~  219 (409)
                      ...+|.+.+..+.-.-....+ ..++.++.
T Consensus       253 a~~yGll~a~~gvGai~Gal~-~~~l~~~~  281 (524)
T PF05977_consen  253 ASGYGLLLAAFGVGAILGALL-LPRLRRRL  281 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhhccc
Confidence            345676665544433333333 33344444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=83.31  E-value=1.7  Score=33.64  Aligned_cols=46  Identities=15%  Similarity=0.275  Sum_probs=39.5

Q ss_pred             eechhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeeccc
Q 015299          291 TAFSPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWGKH  336 (409)
Q Consensus       291 s~~~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~~~  336 (409)
                      +...-+-++.++++++.+-+++|+.+.++|.++.++|+.++.+..+
T Consensus        61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            4556667788999999999999999999999999999888776543

; GO: 0016020 membrane

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues

Probab=82.93  E-value=29  Score=30.70  Aligned_cols=86  Identities=7%  Similarity=0.063  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015299           21 ISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQNFYYAG  100 (409)
Q Consensus        21 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a  100 (409)
                      .+-+++.|.+..+.+.. .... .......-.+++.+++..+..+..+.. .+-.++.++..++.++.. .+.+...+..
T Consensus        91 ~if~~~~gi~~~f~~~~-~~~~-gi~tli~~~i~~G~~~~~~~~~i~~~~-~~~~r~~~~k~~~~~~~~-~~~w~~~~~~  166 (206)
T PF06570_consen   91 GIFSLLFGIMGFFSPKN-SNQY-GIITLILVSIVGGLVFYFIFKYIYPYK-KKKKRPSWWKYILISVLA-MVLWIVIFVL  166 (206)
T ss_pred             HHHHHHHHHHHHHhhcc-cccc-cHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccHHHHHHHHHHHH-HHHHHHHHHH
Confidence            33444555555555533 1222 223333333344444433332322211 111223344444444444 3444444545


Q ss_pred             hcccCchhhh
Q 015299          101 LKFTSPTFSC  110 (409)
Q Consensus       101 l~~~~~~~~~  110 (409)
                      ...+|....-
T Consensus       167 ~~~lp~~inp  176 (206)
T PF06570_consen  167 TSFLPPVINP  176 (206)
T ss_pred             HHHccccCCc
Confidence            5556655443

However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=80.93  E-value=6  Score=30.56  Aligned_cols=60  Identities=22%  Similarity=0.235  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhhcCceEeeech-hhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheee
Q 015299          273 ISYFVQGLVIKKRGPVFATAFS-PLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVL  332 (409)
Q Consensus       273 ~~~~l~~~al~~~~~~~~s~~~-~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~  332 (409)
                      .+..+|+..+++.+-+.+..+. .+...++.+.|..+-.|.+.-..++|..++++|+.+..
T Consensus        64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            3445666778888887776654 56888999999977777778889999999999987753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.89
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.72
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.66
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.52

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.89  E-value=7.3e-10  Score=90.15  Aligned_cols=69  Identities=14%  Similarity=0.260  Sum_probs=53.4

Q ss_pred             HHHHHhHHHHHHHHHHHhhcCceEeeec-hhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeec
Q 015299          266 AGIVTSSISYFVQGLVIKKRGPVFATAF-SPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       266 ~g~~~~~~~~~l~~~al~~~~~~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~  334 (409)
                      +++++++++++++.+++++.+++++..+ ..+.|+++++++++++||++++.+++|+++|++|+++....
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            5666788999999999999999999998 89999999999999999999999999999999999988654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.72  E-value=1.6e-07  Score=73.64  Aligned_cols=100  Identities=14%  Similarity=0.212  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015299           16 PYFAMISLQFGYAGMNIITKVSLNRGMSHYVLVVYRHAFATAVIAPFAFFLERKAQPKITFKVFMQIFVLALLGPVIDQN   95 (409)
Q Consensus        16 g~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~a~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (409)
                      .+++++++.++-.....+.|..  ++..                                 +.+.  .+.+++..++++.
T Consensus         3 ~~l~l~~a~~~e~~~~~~lK~s--~~~~---------------------------------~~~~--~~~~~~~~~~~~~   45 (110)
T 3b5d_A            3 PYIYLGGAILAEVIGTTLMKFS--EGFT---------------------------------RLWP--SVGTIICYCASFW   45 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc--cCcc---------------------------------hHHH--HHHHHHHHHHHHH
Confidence            4677777888888888888876  2211                                 1111  2455666688899


Q ss_pred             HHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           96 FYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        96 ~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      ++.+++++.|++.+..+ ..+.|+++.++++++++|++++.      +++|+.+.++|++++..
T Consensus        46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            99999999999999988 79999999999999999999999      79999999999999874

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.66  E-value=5.6e-08  Score=78.99  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcccCchhhhhh-cchhHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHHHHHH
Q 015299           84 VLALLGPVIDQNFYYAGLKFTSPTFSCAM-SNMLPAMTFVMAVICRMEKINMKKVRCQAKVVGTAVTVAGAMIMTL  158 (409)
Q Consensus        84 ~~g~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~lls~l~l~e~~~~~~~~~~~~~~~~~i~~~Gv~li~~  158 (409)
                      +.+++..++++.+++++++++|++.+..+ .++.|++++++++++++|++++.      +++|+++.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            45666668899999999999999999998 89999999999999999999999      79999999999999975

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.52  E-value=1.1e-07  Score=74.50  Aligned_cols=69  Identities=14%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             HHHHHhHHHHHHHHHHHhhcCceEeeec-hhhHHHHHHHHHHHHhccccchhhhhhHHHHHhhhheeeec
Q 015299          266 AGIVTSSISYFVQGLVIKKRGPVFATAF-SPLMMIIVAIMGSFILAENIYLGSVLGAILIVVGLYSVLWG  334 (409)
Q Consensus       266 ~g~~~~~~~~~l~~~al~~~~~~~~s~~-~~l~pv~a~l~~~~~~~e~~~~~~~iG~~li~~g~~l~~~~  334 (409)
                      .++++..+++.++.+++|+.+.+++..+ ..+.|+++.+++++++||++++.+++|.++|++|+++....
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4555678899999999999999999888 89999999999999999999999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00