Citrus Sinensis ID: 015333

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQNPPKQPIPVVSYASKPKDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVPTITPVSYPSRVAPLPEAGEPASGEAEGEGDGERRRIQSEKKTLRFMRVPEQAQVSVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQYNKVAH
cHHHHHHHHHHHHcccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHcccccccccHHHHHHHHHHHccccccccEEEHHHccccccccccEEEcEEEcccccccEEEEEEEEccccHHHHHHcccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHccccccccccccccccccccHHHHHHHHHcccEEEEccccccEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccEEEcHHHHHHHHHHHHHccc
cHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccEcEEccccccccccHHHHHHHHccccccccEcHHHHHHHHHcccccccccEEEEEEEEccccccHHHccEEEEEccccccccccEEEEcccHHHHHHHHccccEEEcHHHHHHHHHcccccccEEEEcccHHHHHcHHHHHHHHHccccccccccEcccHHHHHHHHHccEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcEEEEcccccccEccHHHHHHHHHHHccccc
MAAVRLLLSQARRhcltkphaspsvtfqrtlcsstavqdddesqnppkqpipvvsyaskpkdesnapiENAQQQQnelqsdnpphdfqaeeartgltredirylkdvptitpvsypsrvaplpeagepasgeaegegdgerRRIQSEKKTLrfmrvpeqaqvsvpypllikpeskkkesrpvLDLMDAIKQVKANAKATFDETVEAHVRlaipprktelivrgtmnlphgdkKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASsgkldvekcfstrqfMPRLFKISKILnqhglmpnpkqgtvTNDVARAVQEAKQGHikfkmdntsnvhaglgkvslkEELLRENVGAFVNALLLAkpaglkktskfagyvnsfhmcstmgpsfpvSIQSLSRALDQYNKVAH
MAAVRLLLSQARrhcltkphaspsvtfqrTLCSSTavqdddesqnppkqpiPVVSYASKPKDESNAPIENAQQQQNELQSDNPPHDFQAEEArtgltredirylkdvptitpvsypsrvaplpeagepasgeaegegdgerrRIQSEkktlrfmrvpeqaqvsvpypllikpeskkkesrpvLDLMDAIKQVKANAKATFDETVEAhvrlaipprktelivrgtmnlphgdKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGhikfkmdntsnVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQYNKVAH
MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQNPPKQPIPVVSYASKPKDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVPTITPVSYPSRVaplpeagepasgeaegegdgeRRRIQSEKKTLRFMRVPEQAQVSVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVaffaegadaeearaagadIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNalllakpaglkkTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQYNKVAH
****************************************************************************************************IRYLKDVPTIT************************************************************************DLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGL***********************HIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPV*****************
**AVRLLLSQARR****************************************************************************************RYLKDVPTITPVSYPSRV**********************************************************ESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRA*********
MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSS*************KQPIPVVSY**************************PPHDFQAEEARTGLTREDIRYLKDVPTITPVSYPSRVAPL********************RIQSEKKTLRFMRVPEQAQVSVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQYNKVAH
**********ARRHCLTKPHASP**********************PPKQPIPVVSY*S*************************************LTRED*RYLKDVPTITPVSYPSRVAPLPE******************RIQSEKKTLRFMRVPEQAQVSVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQYNK***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
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MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQNPPKQPIPVVSYASKPKDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVPTITPVSYPSRVAPLPEAGEPASGEAEGEGDGERRRIQSEKKTLRFMRVPEQAQVSVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQYNKVAH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query409 2.2.26 [Sep-21-2011]
Q5LMQ0232 50S ribosomal protein L1 yes no 0.513 0.905 0.490 3e-49
B9JDR8232 50S ribosomal protein L1 yes no 0.508 0.896 0.457 5e-48
A4WVL9232 50S ribosomal protein L1 yes no 0.518 0.913 0.463 7e-48
B3PW56233 50S ribosomal protein L1 yes no 0.513 0.901 0.449 1e-47
A6U848232 50S ribosomal protein L1 yes no 0.513 0.905 0.444 1e-47
Q2K9M7233 50S ribosomal protein L1 yes no 0.513 0.901 0.449 1e-47
B9JVM5231 50S ribosomal protein L1 yes no 0.508 0.900 0.453 2e-47
C3MAW8232 50S ribosomal protein L1 yes no 0.520 0.918 0.442 3e-47
Q92QI0232 50S ribosomal protein L1 yes no 0.513 0.905 0.449 3e-47
Q8UE05231 50S ribosomal protein L1 yes no 0.508 0.900 0.457 3e-47
>sp|Q5LMQ0|RL1_RUEPO 50S ribosomal protein L1 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rplA PE=3 SV=1 Back     alignment and function desciption
 Score =  196 bits (498), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 139/216 (64%), Gaps = 6/216 (2%)

Query: 183 LDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAE 242
           L +  A+  +K+ A A FDETVE  + L + PR  + +VRG + LP+G  K VRVA FA 
Sbjct: 21  LSVEQAVALIKSAASAKFDETVEIAMNLGVDPRHADQMVRGVVGLPNGTGKTVRVAVFAR 80

Query: 243 GADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPN 302
           G  AEEA+AAGADIVG  +L+E I  SGK++ ++C +T   MP + ++ KIL    LMPN
Sbjct: 81  GPKAEEAQAAGADIVGAEDLMETI-QSGKIEFDRCIATPDMMPVVGRLGKILGPRNLMPN 139

Query: 303 PKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGAFVNALLLA 362
           PK GTVT DVA+AVQ AK G ++FK++    +HAG+GKVS  E  L ENV AFV+A+  A
Sbjct: 140 PKVGTVTMDVAQAVQNAKGGEVQFKVEKAGVIHAGVGKVSFDEAKLVENVRAFVDAVAKA 199

Query: 363 KPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 398
           KPAG K T     Y+    + STMGP   V + S S
Sbjct: 200 KPAGAKGT-----YLKKIALSSTMGPGVSVDVASAS 230
Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.
Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (taxid: 246200)
>sp|B9JDR8|RL1_AGRRK 50S ribosomal protein L1 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|A4WVL9|RL1_RHOS5 50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|B3PW56|RL1_RHIE6 50S ribosomal protein L1 OS=Rhizobium etli (strain CIAT 652) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|A6U848|RL1_SINMW 50S ribosomal protein L1 OS=Sinorhizobium medicae (strain WSM419) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q2K9M7|RL1_RHIEC 50S ribosomal protein L1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|B9JVM5|RL1_AGRVS 50S ribosomal protein L1 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|C3MAW8|RL1_RHISN 50S ribosomal protein L1 OS=Rhizobium sp. (strain NGR234) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q92QI0|RL1_RHIME 50S ribosomal protein L1 OS=Rhizobium meliloti (strain 1021) GN=rplA PE=3 SV=1 Back     alignment and function description
>sp|Q8UE05|RL1_AGRT5 50S ribosomal protein L1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
297824237401 ribosomal protein L1 family protein [Ara 0.953 0.972 0.568 1e-119
30689119415 ribosomal protein .1/L10 family protein 0.958 0.944 0.550 1e-117
449468920424 PREDICTED: 50S ribosomal protein L1-like 0.970 0.936 0.557 1e-113
255580108372 50S ribosomal protein L1p, putative [Ric 0.882 0.970 0.554 1e-109
224128760356 predicted protein [Populus trichocarpa] 0.760 0.873 0.628 1e-107
225446639429 PREDICTED: 50S ribosomal protein L1-like 0.975 0.930 0.555 1e-107
388505910407 unknown [Medicago truncatula] 0.965 0.970 0.544 1e-96
357474637407 50S ribosomal protein L1 [Medicago trunc 0.965 0.970 0.546 1e-96
356517326399 PREDICTED: 50S ribosomal protein L1-like 0.946 0.969 0.538 1e-94
356543094408 PREDICTED: 50S ribosomal protein L1-like 0.970 0.973 0.525 1e-88
>gi|297824237|ref|XP_002880001.1| ribosomal protein L1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297325840|gb|EFH56260.1| ribosomal protein L1 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/415 (56%), Positives = 301/415 (72%), Gaps = 25/415 (6%)

Query: 1   MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQNPPKQPIPVVSYASKP 60
           MAA++LLLSQARR  L KP +SP     R   SS++   ++  + P    I  VSYA+KP
Sbjct: 1   MAAMKLLLSQARRQGLIKPFSSPFQQIPRLFSSSSSSDSNESRKKP--VTIEPVSYAAKP 58

Query: 61  KDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVPTITPVSYPSRVA 120
           KD  + P  N +  +N           Q+ E+ +  TRE+IRY+KD P+I PVSY  RVA
Sbjct: 59  KDPKSEPT-NVESTEN----------LQSPES-SNWTREEIRYVKDSPSINPVSYAQRVA 106

Query: 121 PLPEAGEPASGEAEGEG-----DGERRRIQSEKKTLR-FMRVP--EQAQVSVPYPLLIKP 172
           PLPE  +  +GE EGE      + ER+RI+ E +  R F+R    E+   S+P P L+KP
Sbjct: 107 PLPE--DRVAGENEGERTPEEMERERKRIELENRARRKFLRANAVEEDTSSLPLPTLLKP 164

Query: 173 ESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDK 232
           E K  + +P+ DLM+AI+++KANAKA FDET+EAHVRL I   ++ELIVRGT+ LPH  K
Sbjct: 165 ELKHGK-KPIFDLMEAIREIKANAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSVK 223

Query: 233 KAVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISK 292
           K V+VAFFAEGADAE+A+AAGAD+VGGLELIEEI  SGK+D ++C +T + MPR++KIS+
Sbjct: 224 KDVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPRVYKISR 283

Query: 293 ILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENV 352
           ILN HGLMPNPKQG+VT DV +AV++AK GH KF+MD TS +H  LGK+S  EE LRENV
Sbjct: 284 ILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFPEEALRENV 343

Query: 353 GAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALDQYNKV 407
           GAF+NALLLAKPAGLKKTSK+AGYVN+FH+CSTMG  +PVSIQSLSRA D + K+
Sbjct: 344 GAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSLSRAADLHTKL 398

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|30689119|ref|NP_850375.1| ribosomal protein .1/L10 family protein [Arabidopsis thaliana] gi|20268740|gb|AAM14073.1| unknown protein [Arabidopsis thaliana] gi|21280899|gb|AAM45043.1| unknown protein [Arabidopsis thaliana] gi|26451659|dbj|BAC42926.1| unknown protein [Arabidopsis thaliana] gi|330255065|gb|AEC10159.1| ribosomal protein .1/L10 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449468920|ref|XP_004152169.1| PREDICTED: 50S ribosomal protein L1-like [Cucumis sativus] gi|449484790|ref|XP_004156980.1| PREDICTED: 50S ribosomal protein L1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255580108|ref|XP_002530886.1| 50S ribosomal protein L1p, putative [Ricinus communis] gi|223529539|gb|EEF31492.1| 50S ribosomal protein L1p, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224128760|ref|XP_002320415.1| predicted protein [Populus trichocarpa] gi|222861188|gb|EEE98730.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225446639|ref|XP_002281125.1| PREDICTED: 50S ribosomal protein L1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|388505910|gb|AFK41021.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357474637|ref|XP_003607603.1| 50S ribosomal protein L1 [Medicago truncatula] gi|355508658|gb|AES89800.1| 50S ribosomal protein L1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356517326|ref|XP_003527339.1| PREDICTED: 50S ribosomal protein L1-like [Glycine max] Back     alignment and taxonomy information
>gi|356543094|ref|XP_003539998.1| PREDICTED: 50S ribosomal protein L1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
TAIR|locus:2041519415 AT2G42710 [Arabidopsis thalian 0.963 0.949 0.477 1.6e-88
TIGR_CMR|SPO_3513232 SPO_3513 "ribosomal protein L1 0.513 0.905 0.398 2.4e-35
TIGR_CMR|CJE_0525233 CJE_0525 "ribosomal protein L1 0.542 0.952 0.372 1.1e-32
UNIPROTKB|P96932235 rplA "50S ribosomal protein L1 0.506 0.880 0.369 5.4e-31
TIGR_CMR|GSU_2866234 GSU_2866 "ribosomal protein L1 0.515 0.901 0.368 1.6e-29
TIGR_CMR|CBU_0227232 CBU_0227 "ribosomal protein L1 0.528 0.931 0.333 7.1e-29
TIGR_CMR|DET_0992237 DET_0992 "ribosomal protein L1 0.503 0.869 0.336 1.2e-28
TAIR|locus:2087388346 EMB3126 "EMBRYO DEFECTIVE 3126 0.530 0.627 0.340 8.2e-28
TIGR_CMR|BA_0098230 BA_0098 "ribosomal protein L1" 0.503 0.895 0.330 4.5e-27
TIGR_CMR|ECH_0955220 ECH_0955 "ribosomal protein L1 0.520 0.968 0.348 8.4e-26
TAIR|locus:2041519 AT2G42710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 203/425 (47%), Positives = 262/425 (61%)

Query:     1 MAAVRLLLSQARRHCLTKPHASPSVTFQRTLCSSTAVQDDDESQ---NP-P------KQP 50
             MAA++LLLSQARR  L KP +SP     R   SS++      S    NP P      K+ 
Sbjct:     1 MAAMKLLLSQARRQGLIKPFSSPFQQIPRLFSSSSSSSSSSSSSSDSNPSPDSNESRKKA 60

Query:    51 IPV--VSYASKPKDESNAPIENAQQQQNELQSDNPPHDFQAEEARTGLTREDIRYLKDVP 108
             + +  VSYA+KPKD+ + P +N +  +N LQS  P      E A    TRE+IRY+KD P
Sbjct:    61 VTIEPVSYAAKPKDQKSEP-KNVESTEN-LQS--P------ESANW--TREEIRYVKDSP 108

Query:   109 TITPVSYPSRVX---XXXXXXXXXXXXXXXXXXXXRRRIQSEKKTLR-FMRVP--EQAQV 162
             +I PVSY  RV                        R+RI+ E +  R F+R    E+   
Sbjct:   109 SINPVSYAQRVAPLPEDRVAGENEGDRTPEEMERERKRIELENRARRRFLRANAVEEDTS 168

Query:   163 SVPYPLLIKPESKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVR 222
             S+P P L+KPE K  + +P+ DLM+AI+++K NAKA FDET+EAHVRL I   ++ELIVR
Sbjct:   169 SLPLPTLLKPELKHGK-KPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVR 227

Query:   223 GTMNLPHGDKKAVRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQ 282
             GT+ LPH  KK V+V                  +VGGLELIEEI  SGK+D ++C +T +
Sbjct:   228 GTLALPHSVKKDVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPK 287

Query:   283 FMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVS 342
              MPR++KIS+ILN HGLMPNPKQG+VT DV +AV++AK GH KF+MD TS +H  LGK+S
Sbjct:   288 MMPRVYKISRILNNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMS 347

Query:   343 LKEELLRENVGAFVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALD 402
               EE LRENVGAF+N            TSK+AGYVN+FH+CSTMG  +PVSIQSLSRA D
Sbjct:   348 FSEEALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTMGKGYPVSIQSLSRAAD 407

Query:   403 QYNKV 407
              + K+
Sbjct:   408 LHTKL 412
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0015934 "large ribosomal subunit" evidence=IEA;ISS
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
TIGR_CMR|SPO_3513 SPO_3513 "ribosomal protein L1" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0525 CJE_0525 "ribosomal protein L1" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|P96932 rplA "50S ribosomal protein L1" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2866 GSU_2866 "ribosomal protein L1" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0227 CBU_0227 "ribosomal protein L1" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0992 DET_0992 "ribosomal protein L1" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TAIR|locus:2087388 EMB3126 "EMBRYO DEFECTIVE 3126" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0098 BA_0098 "ribosomal protein L1" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0955 ECH_0955 "ribosomal protein L1" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
PRK05424230 PRK05424, rplA, 50S ribosomal protein L1; Validate 1e-84
TIGR01169227 TIGR01169, rplA_bact, ribosomal protein L1, bacter 2e-75
COG0081228 COG0081, RplA, Ribosomal protein L1 [Translation, 2e-66
CHL00129229 CHL00129, rpl1, ribosomal protein L1; Reviewed 1e-57
cd00403208 cd00403, Ribosomal_L1, Ribosomal protein L1 2e-55
pfam00687200 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10 1e-42
TIGR01170141 TIGR01170, rplA_mito, ribosomal protein L1, mitoch 3e-17
PRK04203215 PRK04203, rpl1P, 50S ribosomal protein L1P; Review 4e-13
PTZ00029216 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Pr 9e-08
pfam03739354 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ 0.002
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated Back     alignment and domain information 
 Score =  257 bits (659), Expect = 1e-84
 Identities = 108/224 (48%), Positives = 142/224 (63%), Gaps = 6/224 (2%)

Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
           +K +   +  L +AI  VK  A A FDETV+  V L + PRK +  VRG + LPHG  K 
Sbjct: 12  EKVDRTKLYSLEEAIALVKETATAKFDETVDVAVNLGVDPRKADQQVRGAVVLPHGTGKT 71

Query: 235 VRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKIL 294
           VRVA FA+G  AEEA+AAGADIVGG +LIE+I   G LD +   +T   M ++ K+ +IL
Sbjct: 72  VRVAVFAKGEKAEEAKAAGADIVGGEDLIEKIKG-GWLDFDVVIATPDMMGKVGKLGRIL 130

Query: 295 NQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGA 354
              GLMPNPK GTVT DVA+AV+EAK G ++F++D    +HA +GKVS   E L+EN+ A
Sbjct: 131 GPRGLMPNPKTGTVTMDVAKAVKEAKAGKVEFRVDKAGIIHAPIGKVSFDAEKLKENLKA 190

Query: 355 FVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLS 398
            ++A+  AKPA  K T     Y+ S  + STMGP   V   SL+
Sbjct: 191 LIDAIKKAKPATAKGT-----YIKSVSLSSTMGPGVKVDPSSLA 229

Length = 230
>gnl|CDD|211630 TIGR01169, rplA_bact, ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|177051 CHL00129, rpl1, ribosomal protein L1; Reviewed Back     alignment and domain information
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1 Back     alignment and domain information
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family Back     alignment and domain information
>gnl|CDD|233298 TIGR01170, rplA_mito, ribosomal protein L1, mitochondrial Back     alignment and domain information
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>gnl|CDD|217705 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 409
CHL00129229 rpl1 ribosomal protein L1; Reviewed 100.0
COG0081228 RplA Ribosomal protein L1 [Translation, ribosomal 100.0
PRK05424230 rplA 50S ribosomal protein L1; Validated 100.0
TIGR01169227 rplA_bact ribosomal protein L1, bacterial/chloropl 100.0
PRK04203215 rpl1P 50S ribosomal protein L1P; Reviewed 100.0
PTZ00225214 60S ribosomal protein L10a; Provisional 100.0
PTZ00029216 60S ribosomal protein L10a; Provisional 100.0
cd00403208 Ribosomal_L1 Ribosomal protein L1. The L1 protein, 100.0
KOG1569323 consensus 50S ribosomal protein L1 [Translation, r 100.0
TIGR01170141 rplA_mito ribosomal protein L1, mitochondrial. Thi 100.0
PF00687220 Ribosomal_L1: Ribosomal protein L1p/L10e family; I 100.0
KOG1570218 consensus 60S ribosomal protein L10A [Translation, 99.95
KOG1685343 consensus Uncharacterized conserved protein [Funct 99.74
PF13003133 MRL1: Ribosomal protein L1; InterPro: IPR024663 Th 95.89
>CHL00129 rpl1 ribosomal protein L1; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2.5e-60  Score=453.23  Aligned_cols=214  Identities=42%  Similarity=0.675  Sum_probs=206.2

Q ss_pred             CCCCCccCHHHHHHHHHHHcccCCCccEEEEEEeCCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCCCe
Q 015333          177 KESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGADI  256 (409)
Q Consensus       177 ~~~~~~~~l~EAI~~lK~~ak~kF~ETVeL~V~L~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGAd~  256 (409)
                      .+ ...|++.|||+++|+.+.++|+||||++|+|++|++|+++++||+|.|||++++..+|||||+++.+++|+++||++
T Consensus        15 ~~-~~~y~l~eAi~~~k~~~~~kF~esvel~i~L~id~kk~~~~irg~v~LP~~~gk~~kV~Vfa~~~~~~eAk~aGad~   93 (229)
T CHL00129         15 IE-KKLYSPEEAINLLKETATAKFIETAEAHISLNIDPKYADQQLRTTVTLPKGTGKTIRIAVLTNEEKITEAKNAGADI   93 (229)
T ss_pred             cc-ccccCHHHHHHHHHHhCcCCCCccEEEEEEECCCCCCCCCceeeEEECCCCCCCCcEEEEECChHhHHHHHHcCCCE
Confidence            45 67999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccHhHHHHHHhcCcccccEEEEcCcchhhHHhhhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCeEEE
Q 015333          257 VGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHA  336 (409)
Q Consensus       257 VGgeeLIekI~~~~kL~fD~fLAtpd~mp~L~kLGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~i~V  336 (409)
                      ||++||+++|+ +++++||+||||++||+.|++||++||||||||+++.|||++||.++|+++++|++.||+++.|++|+
T Consensus        94 vg~edLi~~ik-~~~~~fd~~iAt~d~m~~l~kLgriLGprGlMP~pk~gTvt~di~~~V~~~k~G~v~~r~dk~g~i~~  172 (229)
T CHL00129         94 VGSDDLIEEIT-KGNLDFDLLIATPDMMPKLAKLGRVLGPRGLMPSPKSGTVTTDLASAINEFKKGKLEYRADKTGIVHV  172 (229)
T ss_pred             eCHHHHHHHHH-cCcccCCEEEECHHHHHHHHHhcCcccccCCCCCCCCCCccccHHHHHHHHhcCcEEEEecCCcEEEE
Confidence            99999999998 58999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             EecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEehhhh
Q 015333          337 GLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSL  397 (409)
Q Consensus       337 ~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~~~  397 (409)
                      +||+++|+++||.|||.+++++|.+++|.+.||.     ||+++||||||||+++|++.++
T Consensus       173 ~VG~~~m~~~~l~eNi~a~l~~i~~~~p~~~kg~-----~ik~v~issTMGp~v~i~~~~~  228 (229)
T CHL00129        173 LFGKSNFTEEDLLENLQAIYESIEQNRPSGVKGK-----YWKSFYICSTMGPSIQIDISLL  228 (229)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCc-----eEEEEEEECCCCCCEEeccccc
Confidence            9999999999999999999999999999987764     9999999999999999998765

>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05424 rplA 50S ribosomal protein L1; Validated Back     alignment and domain information
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast Back     alignment and domain information
>PRK04203 rpl1P 50S ribosomal protein L1P; Reviewed Back     alignment and domain information
>PTZ00225 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>PTZ00029 60S ribosomal protein L10a; Provisional Back     alignment and domain information
>cd00403 Ribosomal_L1 Ribosomal protein L1 Back     alignment and domain information
>KOG1569 consensus 50S ribosomal protein L1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01170 rplA_mito ribosomal protein L1, mitochondrial Back     alignment and domain information
>PF00687 Ribosomal_L1: Ribosomal protein L1p/L10e family; InterPro: IPR002143 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG1570 consensus 60S ribosomal protein L10A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1685 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13003 MRL1: Ribosomal protein L1; InterPro: IPR024663 This entry represents a ribosomal protein L1 domain found mainly in chordates Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
3bbo_D352 Homology Model For The Spinach Chloroplast 50s Subu 3e-30
2j01_C229 Structure Of The Thermus Thermophilus 70s Ribosome 4e-29
3qoy_A242 Crystal Structure Of Ribosomal Protein L1 From Aqui 4e-29
1ml5_c228 Crystal Structure Of The Ribosome At 5.5 A Resoluti 1e-28
2hgj_C229 Fitting Of Components With Known Structure Into An 1e-28
3zvp_C229 Crystal Structure Of The Hybrid State Of Ribosome I 2e-28
2v49_C229 Structure Of The Ribosome Recycling Factor Bound To 2e-28
3umy_A228 Crystal Structure Of Mutant Ribosomal Protein T217a 4e-28
1ad2_A228 Ribosomal Protein L1 Mutant With Serine 179 Replace 4e-28
4f9t_A229 Ribosomal Protein L1 From Thermus Thermophilus With 5e-28
3u42_A229 Mutant Ribosomal Protein L1 From Thermus Thermophil 5e-28
487d_H224 Seven Ribosomal Proteins Fitted To A Cryo-Electron 5e-28
3tg8_A228 Mutant Ribosomal Protein L1 Lacking Ala158 From The 3e-27
2hw8_A228 Structure Of Ribosomal Protein L1-Mrna Complex At 2 1e-26
1zho_A228 The Structure Of A Ribosomal Protein L1 In Complex 1e-26
3fin_C191 T. Thermophilus 70s Ribosome In Complex With Mrna, 1e-22
2rdo_9233 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 4e-22
3fik_5234 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 4e-22
2gya_2222 Structure Of The 50s Subunit Of A Pre-Translocation 1e-21
2ov7_A137 The First Domain Of The Ribosomal Protein L1 From T 9e-07
2ov7_A137 The First Domain Of The Ribosomal Protein L1 From T 7e-04
3j21_A216 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-05
>pdb|3BBO|D Chain D, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 352 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (324), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)
Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
           K +E +   DL  A+  +K  +   F ET EAH RL I P+  +  +R T++LP G  K 
Sbjct: 127 KLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKT 186
Query: 235 VRVXXXXXXXXXXXXXXXXXXIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKIL 294
           V++                  IVGG ELIE+I   G +D +K  +T   M ++  + +IL
Sbjct: 187 VKIAVLAQGDKIDEAKAAGADIVGGEELIEQI-KGGFMDFDKLIATSDMMAKVASLGRIL 245
Query: 295 NQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVGA 354
              GLMP PK GTVT +VA+AV+E K+G ++F++D T  VH   GK++ +EE L  N+ A
Sbjct: 246 GPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFA 305
Query: 355 FVNXXXXXXXXXXXXTSKFAGYVNSFHMCSTMGPSFPVSIQSL 397
            +             T     Y  S H+ S+MGPS  ++I+ +
Sbjct: 306 TIK-----SVETNKPTGAKGVYWKSAHISSSMGPSIRLNIREM 343
>pdb|2J01|C Chain C, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 229 Back     alignment and structure
>pdb|3QOY|A Chain A, Crystal Structure Of Ribosomal Protein L1 From Aquifex Aeolicus Length = 242 Back     alignment and structure
>pdb|1ML5|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 228 Back     alignment and structure
>pdb|2HGJ|C Chain C, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 229 Back     alignment and structure
>pdb|3ZVP|C Chain C, Crystal Structure Of The Hybrid State Of Ribosome In Complex With The Guanosine Triphosphatase Release Factor 3 Length = 229 Back     alignment and structure
>pdb|2V49|C Chain C, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 4 Of 4). This File Contains The 50s Subunit Of Molecule 2 Length = 229 Back     alignment and structure
>pdb|3UMY|A Chain A, Crystal Structure Of Mutant Ribosomal Protein T217a Tthl1 In Complex With 80nt 23s Rna From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|1AD2|A Chain A, Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine Length = 228 Back     alignment and structure
>pdb|4F9T|A Chain A, Ribosomal Protein L1 From Thermus Thermophilus With Substitution Thr217ala Length = 229 Back     alignment and structure
>pdb|3U42|A Chain A, Mutant Ribosomal Protein L1 From Thermus Thermophilus With Threonine 217 Replaced By Valine Length = 229 Back     alignment and structure
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 224 Back     alignment and structure
>pdb|3TG8|A Chain A, Mutant Ribosomal Protein L1 Lacking Ala158 From Thermus Thermophilus Length = 228 Back     alignment and structure
>pdb|2HW8|A Chain A, Structure Of Ribosomal Protein L1-Mrna Complex At 2.1 Resolution Length = 228 Back     alignment and structure
>pdb|1ZHO|A Chain A, The Structure Of A Ribosomal Protein L1 In Complex With Mrna Length = 228 Back     alignment and structure
>pdb|3FIN|C Chain C, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 191 Back     alignment and structure
>pdb|2RDO|9 Chain 9, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound Length = 233 Back     alignment and structure
>pdb|3FIK|5 Chain 5, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 234 Back     alignment and structure
>pdb|2GYA|2 Chain 2, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 222 Back     alignment and structure
>pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From Thermus Thermophilus Length = 137 Back     alignment and structure
>pdb|2OV7|A Chain A, The First Domain Of The Ribosomal Protein L1 From Thermus Thermophilus Length = 137 Back     alignment and structure
>pdb|3J21|A Chain A, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 2e-80
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 3e-79
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 9e-79
4f9t_A229 50S ribosomal protein L1; rossman fold, RNA; HET: 2e-78
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 2e-62
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 3e-62
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 1e-60
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 2e-58
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 5e-57
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 6e-55
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 3e-37
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Length = 234 Back     alignment and structure
 Score =  246 bits (629), Expect = 2e-80
 Identities = 83/229 (36%), Positives = 132/229 (57%), Gaps = 6/229 (2%)

Query: 174 SKKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKK 233
            +K ++    D+ +AI  +K  A A F E+V+  V L I  RK++  VRG   LPHG  +
Sbjct: 12  REKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGR 71

Query: 234 AVRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFKISKI 293
           +VRVA F +GA+AE A+AAGA++VG  +L ++I   G+++ +   ++   M  + ++ ++
Sbjct: 72  SVRVAVFTQGANAEAAKAAGAELVGMEDLADQI-KKGEMNFDVVIASPDAMRVVGQLGQV 130

Query: 294 LNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVG 353
           L   GLMPNPK GTVT +VA AV+ AK G ++++ D    +H  +GKV    + L+EN+ 
Sbjct: 131 LGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLE 190

Query: 354 AFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQSLSRALD 402
           A + AL  AKP   K       Y+    + +TMG    V    LS +++
Sbjct: 191 ALLVALKKAKPTQAKGV-----YIKKVSISTTMGAGVAVDQAGLSASVN 234
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 352 Back     alignment and structure
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Length = 242 Back     alignment and structure
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A {Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C ... Length = 229 Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Length = 217 Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 189 Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Length = 219 Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 212 Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Length = 217 Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Length = 137 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
3u42_A229 50S ribosomal protein L1; rossmann fold, rRNA bind 100.0
3qoy_A242 50S ribosomal protein L1; beta-alpha-beta, structu 100.0
2wwq_5234 50S ribosomal protein L1; ribosomal protein, ribon 100.0
3bbo_D352 Ribosomal protein L1; large ribosomal subunit, spi 100.0
3j21_A216 50S ribosomal protein L1P; archaea, archaeal, KINK 100.0
2zkr_5212 60S ribosomal protein L10A; protein-RNA complex, 6 100.0
1i2a_A219 50S ribosomal protein L1P; primary rRNA-binding pr 100.0
1mzp_A217 50S ribosomal protein L1P; ribosome, RNA-protein c 100.0
3iz5_A216 60S ribosomal protein L1 (L1P); eukaryotic ribosom 100.0
2ftc_A189 Mitochondrial ribosomal protein L1; mitochondrial 100.0
3o58_A217 L10A, 60S ribosomal protein L1; ribosomal RNA and 100.0
2ov7_A137 50S ribosomal protein L1; 2.30A {Thermus thermophi 99.97
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ... Back     alignment and structure
Probab=100.00  E-value=1.2e-61  Score=460.91  Aligned_cols=216  Identities=41%  Similarity=0.643  Sum_probs=207.5

Q ss_pred             ccCCCCCccCHHHHHHHHHHHcccCCCccEEEEEEeCCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCC
Q 015333          175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGA  254 (409)
Q Consensus       175 ~k~~~~~~~~l~EAI~~lK~~ak~kF~ETVeL~V~L~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGA  254 (409)
                      .+.+....|++.|||+++|+.+.++|+||||++|+|++|++|++++|||+|.|||++++..+|||||+++++++|+++||
T Consensus        13 ~~~d~~k~y~~~eAi~~lk~~~~~kF~etvel~i~L~vd~~k~dq~vrg~v~LP~g~gk~~kV~Vfa~~~~~~eAk~aGA   92 (229)
T 3u42_A           13 EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGA   92 (229)
T ss_dssp             GSSCTTCCBCHHHHHHHHHHHCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTC
T ss_pred             hccCccCCCCHHHHHHHHHHhCCCCCCccEEEEEEEccCCCCCCCceeEEEECCCCCCCceEEEEecChHhHHHHHhcCC
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeccHhHHHHHHhcCcccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCe
Q 015333          255 DIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSN  333 (409)
Q Consensus       255 d~VGgeeLIekI~~~~kL~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~  333 (409)
                      ++||++||+++|+ ++|++||+|||||+||+.|++ ||++||||||||+|+.|||+.|+.++|+++++|+++||+++.|+
T Consensus        93 d~vG~~dLi~kIk-~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~dk~g~  171 (229)
T 3u42_A           93 DYVGGEEIIQKIL-DGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGA  171 (229)
T ss_dssp             SEEECTHHHHHHH-TTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECCTTSE
T ss_pred             ceeCcHHHHHHHh-cCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeCCCCe
Confidence            9999999999998 599999999999999999975 99999999999999999999999999999999999999999999


Q ss_pred             EEEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEehhh
Q 015333          334 VHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQS  396 (409)
Q Consensus       334 i~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~~  396 (409)
                      +|++||+++|++|||.|||.+++++|.+.+|.+.||.     ||+++||||||||+++|+..|
T Consensus       172 i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~-----~ik~v~lssTmGp~i~id~~s  229 (229)
T 3u42_A          172 IHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGT-----FLRSVYVTTVMGPSVRINPHS  229 (229)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSC-----SEEEEEEECSSSCCEEBCTTC
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCC-----eEEEEEEECCCCcCeEeCCCC
Confidence            9999999999999999999999999999999987764     899999999999999998764
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus} Back     alignment and structure
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2 Back     alignment and structure
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A Back     alignment and structure
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z Back     alignment and structure
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Back     alignment and structure
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A Back     alignment and structure
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 409
d1ad2a_224 e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermo 9e-52
d1mzpa_217 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfo 4e-34
d1i2aa_212 e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Metha 3e-32
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Length = 224 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Thermus thermophilus [TaxId: 274]

 Score =  170 bits (433), Expect = 9e-52
 Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKA 234
           +K +   +  + +A   VK  A A FDETVE H +L I PR+++  VRGT++LPHG  K 
Sbjct: 8   EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQ 67

Query: 235 VRVAFFAEGADAEEARAAGADIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK-ISKI 293
           VRV   A+G   +EA  AGAD VGG E I +    G +D +   +T   M  +   + +I
Sbjct: 68  VRVLAIAKGEKIKEAEEAGADYVGG-EEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRI 126

Query: 294 LNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSNVHAGLGKVSLKEELLRENVG 353
           L   GL+PNPK GTV  ++   ++E K G I+F+ D T  +HA +GK     E L +N+ 
Sbjct: 127 LGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIR 186

Query: 354 AFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQS 396
           AF+ AL   KP G K T     ++ S ++ +TMGPS  ++  S
Sbjct: 187 AFIRALEAHKPEGAKGT-----FLRSVYVTTTMGPSVRINPHS 224
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 217 Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
d1ad2a_224 Ribosomal protein L1 {Thermus thermophilus [TaxId: 100.0
d1mzpa_217 Ribosomal protein L1 {Archaeon Sulfolobus acidocal 100.0
d1i2aa_212 Ribosomal protein L1 {Archaeon Methanococcus janna 100.0
>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Ribosomal protein L1
superfamily: Ribosomal protein L1
family: Ribosomal protein L1
domain: Ribosomal protein L1
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.6e-58  Score=431.36  Aligned_cols=216  Identities=41%  Similarity=0.644  Sum_probs=206.4

Q ss_pred             ccCCCCCccCHHHHHHHHHHHcccCCCccEEEEEEeCCCCCCCCCceeeeEEcCCCCCCCcEEEEEcCchhHHHHHHcCC
Q 015333          175 KKKESRPVLDLMDAIKQVKANAKATFDETVEAHVRLAIPPRKTELIVRGTMNLPHGDKKAVRVAFFAEGADAEEARAAGA  254 (409)
Q Consensus       175 ~k~~~~~~~~l~EAI~~lK~~ak~kF~ETVeL~V~L~id~kK~~~~IRG~V~LPH~~~k~~kIcVFadd~~aeeAkeaGA  254 (409)
                      .+.+....|++.|||+.+|+++.++|+||||++|+|++|++|++++|+|+|.|||++++..+|||||+++.+++|+++||
T Consensus         8 ~~~d~~k~ysi~EAi~~lk~~~~~kF~esvel~i~L~~~~~k~~~~i~g~v~LP~~~~k~~ki~v~~~~e~~~~Ak~aGa   87 (224)
T d1ad2a_           8 EKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGA   87 (224)
T ss_dssp             TSCCTTCCBCHHHHHHHHHTTCCSSSCCEEEEEEEESSCTTCGGGCCEEEEECSSSCSTTSCEEEECCTHHHHHHHHTTC
T ss_pred             hccCccCCcCHHHHHHHHHHcCCCCCCceEEEEEEEcccccccccccceeEEeccccccceeEEEecchHHHHHHHhcCc
Confidence            55667778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeccHhHHHHHHhcCcccccEEEEcCcchhhHHh-hhhhhhcCCCCCCCCCCCccccHHHHHHHHHcCceEEEecCCCe
Q 015333          255 DIVGGLELIEEIASSGKLDVEKCFSTRQFMPRLFK-ISKILNQHGLMPNPKQGTVTNDVARAVQEAKQGHIKFKMDNTSN  333 (409)
Q Consensus       255 d~VGgeeLIekI~~~~kL~fD~fLAtpd~mp~L~k-LGriLGpKGkMP~pK~GTVt~DI~~~I~~~k~Gsv~fr~~k~g~  333 (409)
                      ++||++||+++|+ +++++||+|||++++|+.|++ ||++||||||||+++.||+++|+.++|+++++|++.||+++.|+
T Consensus        88 ~~vg~~eli~ki~-~~~~~fd~~ia~~~~m~~v~~~lgriLGprGlMP~pk~Gtv~~di~~~v~~~k~g~v~~r~~k~g~  166 (224)
T d1ad2a_          88 DYVGGEEIIQKIL-DGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGA  166 (224)
T ss_dssp             SEEECGGGHHHHH-TTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCSCCTTTTCBCSCHHHHHHHHHTTEEEEECCTTSE
T ss_pred             cccCcHHHHHHHh-cCCccchhHHhHHHHHHHHHHhhhhccCcccCCCCCCCCCcchhHHHHHHHHhCCeEEEeeCCCce
Confidence            9999999999998 599999999999999999975 99999999999999999999999999999998999999999999


Q ss_pred             EEEEecccCCChHHHHHhHHHHHHHHHHhCCCCCCCCcccccceeEEEEecCCCCceEEehhh
Q 015333          334 VHAGLGKVSLKEELLRENVGAFVNALLLAKPAGLKKTSKFAGYVNSFHMCSTMGPSFPVSIQS  396 (409)
Q Consensus       334 i~V~IGklsms~eeL~ENI~Avi~aL~~~kP~~lKk~sk~~~nIksVyLkSTmGP~i~I~~~~  396 (409)
                      +|++||+++|+++||+|||.+++++|.+++|.+.++.     ||++||||||||||++|+.+|
T Consensus       167 i~~~IG~~~m~~e~i~eNi~~~i~~i~~~~p~~~k~~-----~ik~v~l~sTmGp~~~id~~s  224 (224)
T d1ad2a_         167 IHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGT-----FLRSVYVTTTMGPSVRINPHS  224 (224)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSC-----SEEEEEEECTTSCCEEECTTC
T ss_pred             eeeeeccccCCHHHHHHHHHHHHHHHHHhCccccCCC-----eEeEEEEECCCCCCEEeCCCC
Confidence            9999999999999999999999999999999886653     899999999999999998764
>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure