Citrus Sinensis ID: 015340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Secondary Structure (PSIPRED)
cccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccccccccccccccEEEEcccccccEEEEEEEEEccccccccHccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHEEEEHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEccccccHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlqmhlsssfslkyhplqkagciktlespvthihgVLNRSQEKKYAIKCSQSNSFYNLTNkiassrnckpfnshrapvtlqdgyasksedddhsnSFLNVFLKKFHALYRFMRAYACAGVIIAttsnsllpvqtladltpAYFTGLMEALVPAVLMHIYVVAINQlsdvevdkvnkpylplasgeismGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAysvqlpllrwkgnSFLAAFCMVSLNGLLTQFPVYVHIQKYvlgrpleiftrplMFATAFISCFCVVIAFIKdlhdvdgdkkfGIKTLSVMLgkerlffpqkVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Flexible Loop (DISEMBL)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINqlsdvevdKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Low Complexity Region (SEG)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYgaavvvgassPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered region (IsUnstruct)
***********LKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKI*********************************SFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFV*
Disordered Region (DISOPRED)
******************************************************************************************************KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered Region (DISEMBL)
********SFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGY********HSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered Region (DISPRO)
****HLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKI*SSRNCKPF*****P****DGY*********SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.781	0.811	0.486	1e-87
B7FA90	404	Probable homogentisate ph	yes	no	0.803	0.811	0.461	3e-80
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.742	0.739	0.422	7e-71
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.723	0.721	0.394	2e-59
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.742	0.784	0.327	1e-32
Q0D576	379	Probable homogentisate ph	no	no	0.598	0.643	0.349	1e-27
C5A1J7	276	Digeranylgeranylglyceryl	yes	no	0.345	0.510	0.302	4e-08
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.436	0.647	0.287	4e-08
B6YW76	276	Digeranylgeranylglyceryl	yes	no	0.360	0.532	0.329	7e-08
Q971A3	278	Digeranylgeranylglyceryl	yes	no	0.372	0.546	0.291	3e-07

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  323 bits (828), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 230/327 (70%), Gaps = 8/327 (2%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLS 381
           R+F+        V++L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS
Sbjct: 313 RVFWT------CVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLS 366

Query: 382 DNASILSFYMFIWKLYYAEYLLIPFVR 408
               I S YMFIWKL+YAEYLL+PF++
Sbjct: 367 SKTEITSCYMFIWKLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  299 bits (765), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 156/338 (46%), Positives = 221/338 (65%), Gaps = 10/338 (2%)

Query: 74  HRAPVTLQD--GYASKSEDDDH-SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLL 130
           HR   +  D  G   +S  + H S+S          A YRF R +   G  ++  S SLL
Sbjct: 74  HRPTSSSADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLL 133

Query: 131 PVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGT 190
            V+ L+D++P + TGL+EA+V A+ M+IY+V +NQL D+E+DKVNKP LPLASGE S  T
Sbjct: 134 AVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPAT 193

Query: 191 GIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS 250
           G+A+  A A MS      + S P   A+     +GTAYS+ LP LRWK ++ +AA C+++
Sbjct: 194 GVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILA 253

Query: 251 LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFG 310
           +  ++ Q   ++HIQ +V  RP  +FTRPL+FATAF++ F VVIA  KD+ D++GD+ FG
Sbjct: 254 VRAVIVQLAFFLHIQTFVFRRP-AVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFG 312

Query: 311 IKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASI 370
           IK+ SV LG+      +KVF + V +L +AY  A+++GA+S  L +K  T++GH ILA+I
Sbjct: 313 IKSFSVRLGQ------KKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAI 366

Query: 371 FWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 408
            W R R++DL+   +I SFYMFIWKL+YAEYLLIP VR
Sbjct: 367 LWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  268 bits (684), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 134/317 (42%), Positives = 202/317 (63%), Gaps = 14/317 (4%)

Query: 92  DHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALV 151
           D  N  L++F       Y+F R YA   +++  T  SL+ V+ L+DL+ A+F G ++ +V
Sbjct: 108 DSVNDALDIF-------YKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVV 160

Query: 152 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRS 211
             + +HI+ V +NQL D+E+DK+NKP LPLASG++S    + IT +S ++ L +A ++ S
Sbjct: 161 AVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDS 220

Query: 212 PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGR 271
            P  W V     V +AY+V LPLLRWK    L A   ++   +      ++H+Q  V  R
Sbjct: 221 WPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKR 280

Query: 272 PLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFR 331
           P   F RPL+F TA +S + +VIA  KD+ D++GD+KFGI++LS+ LG      P++VF 
Sbjct: 281 P-TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLG------PKRVFW 333

Query: 332 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM 391
           + VS+L + YG  ++VGA+SP L +K+IT++GH +LAS+ W   ++VDL+ N  + SFYM
Sbjct: 334 ICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYM 393

Query: 392 FIWKLYYAEYLLIPFVR 408
           FIWKL+ AEY LIP  R
Sbjct: 394 FIWKLHTAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  230 bits (586), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 185/302 (61%), Gaps = 7/302 (2%)

Query: 107 ALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQL 166
           A Y F   Y   G+ +   S+SLL V+ L+D++ ++  G+++ ++P + + IY+  +NQL
Sbjct: 115 AFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQL 174

Query: 167 SDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGT 226
            D+E+DK+NKP+LP+ASG+ S  TG+ I+ A   +S  +  +  S P I  ++      T
Sbjct: 175 YDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWT 234

Query: 227 AYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF 286
           AYS+ +PLLRWK   F+AA CM+S   L      + H+Q  VL RP+  F R L F  AF
Sbjct: 235 AYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIG-FPRSLGFLVAF 293

Query: 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVV 346
           ++ + + +A  KD+ DV+GDK+ GI + +V LG++R F+      + VS   +A+G  ++
Sbjct: 294 MTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFW------ICVSFFEMAFGVGIL 347

Query: 347 VGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPF 406
            GAS      K+ T +G+ +LASI W + ++VDLSD AS  SFYMFIWKL YA + L+  
Sbjct: 348 AGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKLLYAGFFLMAL 407

Query: 407 VR 408
           +R
Sbjct: 408 IR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/327 (32%), Positives = 173/327 (52%), Gaps = 24/327 (7%)

Query: 88  SEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGL- 146
           +E DD     L+   +  +A +RF+R +   G  + +T+   L  + L + T      L 
Sbjct: 77  AESDD---PVLDRIARFQNACWRFLRPHTIRGTALGSTA---LVTRALIENTHLIKWSLV 130

Query: 147 ---MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSL 203
              +  L+  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L
Sbjct: 131 LKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGL 190

Query: 204 AYAVMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262
              V     PFI ++ +  +F+GT YSV  P LR K     A   + ++ G L  F VY 
Sbjct: 191 -LVVGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY- 246

Query: 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER 322
           H  +  LG P + ++ P+ F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   
Sbjct: 247 HATRAALGLPFQ-WSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRN 305

Query: 323 LFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD 382
           + F      L   +L + Y +A+ +    P +    + I  H ILAS    +   ++ ++
Sbjct: 306 IAF------LGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKAN 359

Query: 383 --NASILSFYMFIWKLYYAEYLLIPFV 407
               +I  +Y FIW L+YAEYLL PF+
Sbjct: 360 YTKEAISGYYRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 142/266 (53%), Gaps = 22/266 (8%)

Query: 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG--IAITLASALMSLAYA 206
            LV  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ T   + +  A+A  S+   
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSI--- 185

Query: 207 VMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 265
           V+    PFI ++    +F+GT YSV  P  R K     A   + ++ G L  F VY +  
Sbjct: 186 VVTNFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YAT 242

Query: 266 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFF 325
           +  LG   + ++ P+ F T F++ F +VIA  KDL DV+GD+K+ I TL+  LG   + F
Sbjct: 243 RAALGLTFQ-WSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAF 301

Query: 326 PQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILAS--IF--WLRVRAVDLS 381
                 L   +L   Y AA+ V    P    + + +  H  LA   IF  W+  +A    
Sbjct: 302 ------LGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTK 355

Query: 382 DNASILSFYMFIWKLYYAEYLLIPFV 407
           D  +I  +Y FIW L+YAEY+  P +
Sbjct: 356 D--AISQYYRFIWNLFYAEYIFFPLI 379

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1764 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 21/162 (12%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN   D E+D++N+P  PL  G +   T +  +L    + LA A++I    F +A++A+I
Sbjct: 56  INDYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLALALLISLKAFAFALLAYI 115

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
            +   Y+ +L  L + GN  +AA   V+        P+Y  I    +G          + 
Sbjct: 116 TM-FLYAWKLKPLPFIGNIAVAALTGVT--------PLYGAIAVGKIG----------LA 156

Query: 283 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKER 322
            T  +  F V +A   +KD+ DV+GD K G KTL ++LG+ +
Sbjct: 157 GTLAVCAFLVNVAREIVKDIEDVEGDLKKGAKTLPIILGRRK 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 20/198 (10%)

Query: 132 VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG 191
           + T    TP +F  L+  +V  +    YV  IN + D+EVDK+NKP  PL SG I++   
Sbjct: 28  IATTWKFTPLFFLPLL--VVSLIAAGGYV--INDVYDIEVDKINKPERPLPSGRIAVNIA 83

Query: 192 IAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251
              ++    + L  ++ +   PF +A+I  + +   Y+  L  L   GN       +V+L
Sbjct: 84  RRFSIVLFAVGLIISIPLGLIPFGFALITIVLL-YEYARSLKKLGLVGN------FIVAL 136

Query: 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGI 311
              L+ +  Y  +     G  L  F  P    T +I  F +   F+K + D++GDK+ G+
Sbjct: 137 TSALSAY--YGGLAS---GSLLGNFIIP----TIYIFFFTLSREFVKGIEDIEGDKRNGV 187

Query: 312 KTLSVMLGKERLFFPQKV 329
            TL+V LG++  +   K+
Sbjct: 188 NTLAVKLGEKSTWIIAKI 205

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 29/176 (16%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASAL--MSLAYAVMIRSPPFIWAVIA 220
           IN   D E+DK+N+P  PL  G  +MG  +A+  +  L  + LA A MI    FI  VIA
Sbjct: 56  INDYFDYEIDKINRPERPLPRG--AMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIA 113

Query: 221 WI--FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           ++  F+   Y+ +L  L + GN  +A        GL    P+Y  +    LG        
Sbjct: 114 YVTMFI---YAWKLKPLPFVGNIVVA--------GLTGATPLYGAVAVEHLG-------- 154

Query: 279 PLMFATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL 332
             +     I  F V +A   IKD+ DV+GD   G KTL ++ GK+R  +   +F L
Sbjct: 155 --LAGYLAICAFLVNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKRAAYVGVLFAL 208

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_14510 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 16/168 (9%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN + D+E+DK+NKP  PL SG I +    ++++   L+ +  +V++    FI A++  +
Sbjct: 56  INDVFDIEIDKINKPNRPLPSGRIKISRARSLSIVLFLVGIVLSVLLNIYAFIIALLT-V 114

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVS-LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLM 281
                Y+  L      GN  +A    +S   G L  F        +V+        R L+
Sbjct: 115 LALYYYAKDLKKQGLVGNLIVALTSALSAFYGGLAFFE-----GSWVI--------RTLI 161

Query: 282 FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKV 329
             T +I  F +   F+K + DV GD   G+KTL+V +G E+ +F  K+
Sbjct: 162 -PTLYIFFFTLTREFVKGIEDVKGDMTNGVKTLAVRVGIEKTWFISKI 208

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
219842170	411	homogentisate geranylgeranyl transferase	0.936	0.929	0.476	5e-90
295656253	401	homogentisate geranylgeranyl transferase	0.963	0.980	0.471	1e-89
359476155	397	PREDICTED: probable homogentisate phytyl	0.904	0.929	0.453	1e-89
185487419	407	homogentisate phytyltransferase [Manihot	0.879	0.882	0.464	3e-87
171190284	317	homogentisate geranylgeranyl transferase	0.732	0.943	0.542	2e-86
377657555	394	homogentisate phytyltransferase [Brassic	0.742	0.769	0.503	6e-86
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.781	0.811	0.486	8e-86
297836742	393	predicted protein [Arabidopsis lyrata su	0.781	0.811	0.483	1e-85
299507806	393	homogentisate phytyltransferase [Solanum	0.781	0.811	0.483	2e-85
147858275	406	hypothetical protein VITISV_043992 [Viti	0.723	0.726	0.509	3e-85

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 196/411 (47%), Positives = 262/411 (63%), Gaps = 29/411 (7%)

Query: 13  KYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAI---------KCSQSNSFYNLTN-KI 62
           KY  L   G + T+      ++ +L  S  KK  I         K S+    Y L N +I
Sbjct: 15  KYQVLD-PGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNSRKKELYVLRNLRI 73

Query: 63  ASSRNCKPFNSHRAPVTLQDGY-ASKSEDDDH--SNSFLNVFLKKFHALYRFMRAYACAG 119
            + +N  P       + LQ+ + A  SED D   S+S     L+  ++LY+F R +   G
Sbjct: 74  LTRKNGIP------AIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIG 127

Query: 120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179
            II  TS SLLPV+T+ DL+P YF GL++ALVP+VLM+IYVV +NQL DVE+DKVNKPYL
Sbjct: 128 TIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYL 187

Query: 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKG 239
           PLASG+ SM TGI I  AS L+SL   +  +SPP + A++    +G+ YS++LP LRWK 
Sbjct: 188 PLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKK 247

Query: 240 NSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 299
           ++FLAA C++ +  ++ Q   +VHIQK+VLG+ + I  R LMFATAF+  F   IA  KD
Sbjct: 248 HAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFI-PRSLMFATAFMCFFSAAIALFKD 306

Query: 300 LHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSP--FLANK 357
           + DV+GD+ +GI++ SV LG+ER      V  L V+ML +AYGAAVV GASSP   L  K
Sbjct: 307 IPDVEGDRDYGIQSFSVSLGQER------VLWLCVNMLLVAYGAAVVHGASSPSSLLPVK 360

Query: 358 LITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 408
           LIT+IGH  +A I W++ + VDL+   SI SFYMFIWKL+YAEY LIPFVR
Sbjct: 361 LITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 196/416 (47%), Positives = 263/416 (63%), Gaps = 23/416 (5%)

Query: 1   MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNL-- 58
           M+Q H     S +       G I  L+ P  H+    N +  KK ++     +S  N+  
Sbjct: 1   MIQAHNHPFVSCRLQNPPNQGLITLLQRPQRHLK-FSNGNTAKKLSV-----HSCVNILA 54

Query: 59  -TNKIASSRNCKPFNSHRAPV-----TLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFM 112
            T  I+SSR+ KP    + P      TL+  +  +S+DD  +        +K  A YRF 
Sbjct: 55  ATLSISSSRS-KPTRGKKLPGQTLCGTLEHEFVIESKDDQLT-LLQGDLWRKIDAFYRFS 112

Query: 113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172
           R +   G II  TS SLLP+ ++ DL+PA+F G ++AL+P++ M+IYVV +NQL DVE+D
Sbjct: 113 RPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEID 172

Query: 173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQL 232
           KVNKP LPLASGE SMG G AI  A  LMS A  ++ +SPP  +A++     G+AYSV+L
Sbjct: 173 KVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVEL 232

Query: 233 PLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV 292
           PLLRWK N+FLAAF ++ +  +      + HIQKYVLGRP+ +F R L FAT  IS F  
Sbjct: 233 PLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPM-VFPRSLCFATVCISMFTT 291

Query: 293 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSP 352
           VIA  KD+ DVDGD+ FGI++ SV LG++R      VF L + +L IAY +A+V+GASS 
Sbjct: 292 VIALFKDIPDVDGDRDFGIQSFSVCLGQKR------VFWLCIGILLIAYASALVIGASSS 345

Query: 353 FLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 408
           FL +KL+T+IGH  LASI W R  +V+L DN+S+ SFYM IWKL+YAEYLLIPFVR
Sbjct: 346 FLLSKLVTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIWKLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/397 (45%), Positives = 252/397 (63%), Gaps = 28/397 (7%)

Query: 17  LQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCK--PFNSH 74
           LQ+ GC++  +  V   H  L           C  SN F   +   +SS N +   F SH
Sbjct: 24  LQQQGCVQPPQLSVKKTHNFLK---------SCYCSNPFKCCSEGFSSSVNIQHLTFKSH 74

Query: 75  -RAP--VTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLP 131
            R P  V+ + GY SK ED +H +       K+  A Y F R +   G +I  TS SLLP
Sbjct: 75  KRNPIHVSSEYGYPSKPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLP 127

Query: 132 VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG 191
           ++T++DL+PA+F GL++A+VP+VLM+IYVV +NQ+ DVE+DKVNKP LPLASG+ SM TG
Sbjct: 128 LETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETG 187

Query: 192 IAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251
             I   S LMS+   +M +SPP   A++    +GTAYS+++PLLRWK    LAA C++ +
Sbjct: 188 SQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIV 247

Query: 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGI 311
             ++ Q   + HIQK+VLGR + ++T+ ++F  AF+  F  VIA  KD+ DVDGD++FGI
Sbjct: 248 RAIVVQLAFFAHIQKHVLGRSI-VYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGI 306

Query: 312 KTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF 371
           ++ +V LG+      +KVF L V+ML +AYGAA V+GASS  +  K  T+  H  LA + 
Sbjct: 307 QSFTVKLGQ------KKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVL 360

Query: 372 WLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 408
           W+R ++VDLS   ++ SFYMFIWKL+YAEY LIP VR
Sbjct: 361 WVRAQSVDLSSKEAVTSFYMFIWKLFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/368 (46%), Positives = 244/368 (66%), Gaps = 9/368 (2%)

Query: 42  EKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHS-NSFLNV 100
           E+ Y  K       ++L + +  S   +  ++H   V    G   +SE D +S  S  N 
Sbjct: 48  ERHYFAKSQHHQMKHHLRHIVERSTIYQKSDAHFL-VHATSGQPLESEPDAYSPKSTSNS 106

Query: 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYV 160
            L    A YRF R +   G  ++  S SLL V+ L+DL+P +FTG++EA+V A+LM+IY+
Sbjct: 107 ILNALDAFYRFSRPHTVIGTALSILSVSLLAVEKLSDLSPLFFTGVLEAVVAALLMNIYI 166

Query: 161 VAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 220
           V +NQL+D+E+DKVNKPYLPLASGE S+G G+ I  + ++MS     ++ S P  WA+  
Sbjct: 167 VGLNQLTDIEIDKVNKPYLPLASGEYSVGIGVMIIASFSMMSFWLGWVVGSWPLFWALFV 226

Query: 221 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPL 280
              +GTAYS+ LPLLRWK  +F+AA C++++  ++ Q   Y+H+Q +V GRP  +F+RPL
Sbjct: 227 SFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLAFYLHMQTHVYGRP-AVFSRPL 285

Query: 281 MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIA 340
           +FATAF+S F VVIA  KD+ D++GDK FGI++ +V LG+ER+F+        +S+L IA
Sbjct: 286 IFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQERVFWT------CISLLEIA 339

Query: 341 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAE 400
           YG A++VGA+S    +K IT++GH ILASI W R ++VDL   A+I S YMFIWKL+YAE
Sbjct: 340 YGVAILVGAASSHTWSKCITVLGHAILASILWNRAKSVDLKSKAAITSCYMFIWKLFYAE 399

Query: 401 YLLIPFVR 408
           YLLIP VR
Sbjct: 400 YLLIPLVR 407

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/306 (54%), Positives = 219/306 (71%), Gaps = 7/306 (2%)

Query: 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVA 162
           +K  A YRF R +   G I+  TS SLLP+ +  DL+PA+F GL++ ++P V ++IYVV 
Sbjct: 19  RKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYVVG 78

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           +NQL DVE+DKVNKP LP+ASGE SM TG AI  A  LMS+   +M +SPP ++ ++   
Sbjct: 79  LNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLVCF 138

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
           F GTAYS+ +PL RWK N+FLAA C+V +  +  Q  V+ HIQ+YVLGRP+ +F+R L F
Sbjct: 139 FFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPV-LFSRSLAF 197

Query: 283 ATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYG 342
           A   ++ F  VIA  KD+ DVDGD+ FGI+T++V LGK+R      VF L +++L IAYG
Sbjct: 198 AIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKR------VFWLCITILLIAYG 251

Query: 343 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYL 402
           +AVV+G+SS  L +KL+T+ GH ILASI W R  +VDL  N SI SFYMFIWKL+YAEYL
Sbjct: 252 SAVVIGSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIWKLFYAEYL 311

Query: 403 LIPFVR 408
           LIPFVR
Sbjct: 312 LIPFVR 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 156/310 (50%), Positives = 223/310 (71%), Gaps = 7/310 (2%)

Query: 99  NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI 158
           N F     A YRF R +   G +++  S S L V+ ++D++P  FTG++EA+V A++M+I
Sbjct: 92  NSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNI 151

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAV 218
           Y+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++MS     ++ S P  WA+
Sbjct: 152 YIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPLFWAL 211

Query: 219 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
                +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y+HIQ +V GRP+ +FTR
Sbjct: 212 FVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPV-MFTR 270

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS 338
           PL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG+ER+F+        VS+L 
Sbjct: 271 PLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERVFWT------CVSLLQ 324

Query: 339 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYY 398
           +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I S YMFIWKL+Y
Sbjct: 325 MAYAVAILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLSSKTEITSCYMFIWKLFY 384

Query: 399 AEYLLIPFVR 408
           AEYLL+PF++
Sbjct: 385 AEYLLLPFLK 394

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  323 bits (828), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 159/327 (48%), Positives = 230/327 (70%), Gaps = 8/327 (2%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLS 381
           R+F+        V++L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS
Sbjct: 313 RVFWT------CVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLS 366

Query: 382 DNASILSFYMFIWKLYYAEYLLIPFVR 408
               I S YMFIWKL+YAEYLL+PF++
Sbjct: 367 SKTEITSCYMFIWKLFYAEYLLLPFLK 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/327 (48%), Positives = 230/327 (70%), Gaps = 8/327 (2%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D +NS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-ANSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLS 381
           R+F+        +S+L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS
Sbjct: 313 RVFWT------CISLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLS 366

Query: 382 DNASILSFYMFIWKLYYAEYLLIPFVR 408
               I S YMFIWKL+YAEYLL+PF++
Sbjct: 367 SKTEITSCYMFIWKLFYAEYLLLPFLK 393

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|299507806|gb|ADJ21814.1| homogentisate phytyltransferase [Solanum tuberosum]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 158/327 (48%), Positives = 230/327 (70%), Gaps = 8/327 (2%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIA+  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAMVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLS 381
           R+F+        V++L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS
Sbjct: 313 RVFWT------CVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLS 366

Query: 382 DNASILSFYMFIWKLYYAEYLLIPFVR 408
               I S YMFIWKL+YAEYLL+PF++
Sbjct: 367 SKTEITSCYMFIWKLFYAEYLLLPFLK 393

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 154/302 (50%), Positives = 220/302 (72%), Gaps = 7/302 (2%)

Query: 107 ALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQL 166
           A YRF R +   G  ++  S SLL V+ L+D +P +FTG++EA+V A+LM+IY+V +NQ+
Sbjct: 112 AFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLFFTGVLEAVVAALLMNIYIVGLNQI 171

Query: 167 SDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGT 226
           SD+E+DKVNKPYLPLASGE S+GTG+ I  + A+MS     ++ S P  WA+     +GT
Sbjct: 172 SDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAVMSFLVGWIVGSWPLFWALFVSFVLGT 231

Query: 227 AYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF 286
           AYS+ LPLLRWK  + +AA C++++  ++ Q   Y+H+Q +V GRP  +F+RPL+FATAF
Sbjct: 232 AYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYMHVQTFVYGRP-AVFSRPLIFATAF 290

Query: 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVV 346
           +S F VVIA  KD+ D++GDK FGI++ SV LG++R+F+      + + +L +AYGAAV 
Sbjct: 291 MSFFSVVIALFKDIPDIEGDKIFGIRSFSVRLGQKRVFW------ICILLLEMAYGAAVS 344

Query: 347 VGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPF 406
           VGA+S  L +KL+T++GH +LASI W R +++DL   A+I SFYMFIW+L+YAEY LIP 
Sbjct: 345 VGATSSCLWSKLVTVLGHAVLASILWTRAKSIDLKSKAAITSFYMFIWQLFYAEYFLIPL 404

Query: 407 VR 408
           VR
Sbjct: 405 VR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.774	0.804	0.475	1.1e-78
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.875	0.877	0.378	7.6e-64
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.718	0.714	0.416	5.4e-63
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.700	0.727	0.347	1.7e-36

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 154/324 (47%), Positives = 221/324 (68%)

Query:    85 ASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFT 144
             A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P  FT
Sbjct:    78 AGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFT 136

Query:   145 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLA 204
             G++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++MS  
Sbjct:   137 GILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFW 196

Query:   205 YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 264
                ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y+HI
Sbjct:   197 LGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHI 256

Query:   265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLF 324
             Q +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++R+F
Sbjct:   257 QTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query:   325 FPQKVFRLSVSMLSIAYXXXXXXXXXXPFLANKLITIIGHGILASIFWLRVRAVDLSDNA 384
             +        V++L +AY          PF+ +K+I+++GH ILA+  W R ++VDLS   
Sbjct:   316 WT------CVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKT 369

Query:   385 SILSFYMFIWKLYYAEYLLIPFVR 408
              I S YMFIWKL+YAEYLL+PF++
Sbjct:   370 EITSCYMFIWKLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 140/370 (37%), Positives = 212/370 (57%)

Query:    42 EKKY-AIKCSQSN--SFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFL 98
             +K+Y A+  S+ N    Y +    ++S+ C+      A       Y  ++ D  +    +
Sbjct:    48 QKEYCAVIFSRHNLKQHYKVNEGGSTSKECEKKYVVNAISEQSFEYEPQARDPKNIWGSV 107

Query:    99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI 158
             N  L  F   Y+F R YA   V++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI
Sbjct:   108 NDALDTF---YKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHI 164

Query:   159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAV 218
             + V +NQL D+E+DK+NKP LPLASG +S    + IT +S ++ L +A ++ S P  W V
Sbjct:   165 FDVGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTV 224

Query:   219 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
                     AY+V LPLLRWK    L A   ++   +      ++H+Q  V  RP   F R
Sbjct:   225 FICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTT-FPR 283

Query:   279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS 338
             PL+F TA +S + +VIA  KD+ D++GD+KFGI++LS+ LG      P++VF + VS+L 
Sbjct:   284 PLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLG------PKRVFWICVSLLE 337

Query:   339 IAYXXXXXXXXXXPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYY 398
             +AY          P L +K+IT++GH ILAS+ W   ++ DL+ N  + SFYMFIWKL+ 
Sbjct:   338 MAYGVTILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWKLHT 397

Query:   399 AEYLLIPFVR 408
             AEY LIP  R
Sbjct:   398 AEYCLIPLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 125/300 (41%), Positives = 188/300 (62%)

Query:   109 YRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSD 168
             Y+F R YA   +++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI+ V +NQL D
Sbjct:   118 YKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCD 177

Query:   169 VEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAY 228
             +E+DK+NKP LPLASG++S    + IT +S ++ L +A ++ S P  W V     V +AY
Sbjct:   178 IEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAY 237

Query:   229 SVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFIS 288
             +V LPLLRWK    L A   ++   +      ++H+Q  V  RP   F RPL+F TA +S
Sbjct:   238 NVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTT-FPRPLIFCTAIVS 296

Query:   289 CFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYXXXXXXX 348
              + +VIA  KD+ D++GD+KFGI++LS+ LG      P++VF + VS+L + Y       
Sbjct:   297 IYAIVIALFKDIPDMEGDEKFGIQSLSLRLG------PKRVFWICVSLLEMTYGVTILVG 350

Query:   349 XXXPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 408
                P L +K+IT++GH +LAS+ W   ++VDL+ N  + SFYMFIWKL+ AEY LIP  R
Sbjct:   351 ATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 108/311 (34%), Positives = 165/311 (53%)

Query:   106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI----YVV 161
             +A +RF+R +   G  + +T+   L  + L + T      L+   +  +L  I    Y+V
Sbjct:    99 NACWRFLRPHTIRGTALGSTA---LVTRALIENTHLIKWSLVLKALSGLLALICGNGYIV 155

Query:   162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
              INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L   V     PFI ++ + 
Sbjct:   156 GINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLL-VVGFNFGPFITSLYSL 214

Query:   222 -IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPL 280
              +F+GT YSV  P LR K     A   + ++ G L  F VY H  +  LG P + ++ P+
Sbjct:   215 GLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQ-WSAPV 270

Query:   281 MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIA 340
              F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   + F      L   +L + 
Sbjct:   271 AFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAF------LGSGLLLVN 324

Query:   341 YXXXXXXXXXXPFLANKLITIIGHGILAS--IF--WLRVRAVDLSDNASILSFYMFIWKL 396
             Y          P +    + I  H ILAS  IF  W+  +A + +  A I  +Y FIW L
Sbjct:   325 YVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKA-NYTKEA-ISGYYRFIWNL 382

Query:   397 YYAEYLLIPFV 407
             +YAEYLL PF+
Sbjct:   383 FYAEYLLFPFL 393


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      408       398   0.00097  117 3  11 22  0.43    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  242 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.46u 0.10s 31.56t   Elapsed:  00:00:01
  Total cpu time:  31.46u 0.10s 31.56t   Elapsed:  00:00:01
  Start:  Fri May 10 19:22:50 2013   End:  Fri May 10 19:22:51 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7FA90	HPT1_ORYSJ	2, ., 5, ., 1, ., n, 8	0.4615	0.8039	0.8118	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-130
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	5e-69
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	1e-20
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	8e-18
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	7e-12
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	3e-10
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	6e-10
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	1e-08
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	3e-08
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	1e-07
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	2e-06
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	9e-06
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	1e-04
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-04
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	8e-04
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	0.001
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  375 bits (964), Expect = e-130
 Identities = 160/287 (55%), Positives = 217/287 (75%), Gaps = 7/287 (2%)

Query: 122 IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL 181
           +  TS SLL V++L+D +P +FTGL+EALVPA+LM+IY+V +NQL D+E+DKVNKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNS 241
           ASGE S+ TG+AI  + A+MS     ++ S P  WA+     +GTAYS+ LPLLRWK ++
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 242 FLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 301
             AA C++++  ++ Q   ++H+Q +VLGRP  +FTRPL+FATAF+  F VVIA  KD+ 
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIFATAFMCFFSVVIALFKDIP 179

Query: 302 DVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITI 361
           DV+GD+ FGI++ SV LG++R      VF L V++L +AY AA++VGASS FL +K+IT+
Sbjct: 180 DVEGDRIFGIRSFSVRLGQKR------VFWLCVNLLEMAYAAAILVGASSSFLWSKIITV 233

Query: 362 IGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 408
           +GHGILASI W R ++VDLS  A+I SFYMFIWKL+YAEY LIP VR
Sbjct: 234 LGHGILASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  220 bits (562), Expect = 5e-69
 Identities = 106/319 (33%), Positives = 173/319 (54%), Gaps = 24/319 (7%)

Query: 94  SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTG-------L 146
             + L       +AL++F R +     II T S S+L +  +A +  +  T        L
Sbjct: 2   PKNPLQPMTSWLYALWKFSRPHT----IIGT-SLSVLGLYLIA-IAASSNTIALANLGLL 55

Query: 147 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206
           + A +  +  ++Y+V +NQL+D+E+D++NKP+LPLA+GE S   G  I + + +++L  A
Sbjct: 56  LGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILA 115

Query: 207 VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK 266
             +  P  +  V   + +GTAYS  LP +R K    LAA C+ ++ G++    +++H Q 
Sbjct: 116 -ALLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ- 171

Query: 267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFP 326
           ++LG  + I    +   T F+  F   IA  KD+ D++GD+++ I T ++ LGK+     
Sbjct: 172 WLLGGSVLIPP-TVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQA---- 226

Query: 327 QKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI 386
             VF+LS  +L+  Y   + VG  S    N    I+ H IL ++ W R + VDL D  +I
Sbjct: 227 --VFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAI 284

Query: 387 LSFYMFIWKLYYAEYLLIP 405
             FY FIWKL++ EYLL P
Sbjct: 285 AQFYQFIWKLFFLEYLLFP 303

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 25/249 (10%)

Query: 153 AVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210
            +L+      +N   D E+D    NKP  PL SG IS    + + LA  L+ L  A+++ 
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLL- 90

Query: 211 SPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLG 270
            P  +   +  + +G  YS   P LR K    L    +    GLL      + +  Y +G
Sbjct: 91  GPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLL------ILLGAYAVG 141

Query: 271 RPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVF 330
                   PL+     +    + I    D+ DV+GD+K GI+TL V LG++R        
Sbjct: 142 G---DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKR-------- 190

Query: 331 RLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFY 390
             ++++ ++   AA+++      L   L+ ++   +LA    +  R +   +       +
Sbjct: 191 --ALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTF 248

Query: 391 MFIWKLYYA 399
           +FI  L+  
Sbjct: 249 LFIALLFGL 257

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 82.7 bits (205), Expect = 8e-18
 Identities = 60/315 (19%), Positives = 110/315 (34%), Gaps = 36/315 (11%)

Query: 98  LNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMH 157
           L   LK    L R  R      +++      LL    L  L          A +   L  
Sbjct: 6   LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLL-----AFLAFFLAR 60

Query: 158 IYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
                IN L+D E+D++N      PL SG +S+   + + +   L+ LA A+++ +P   
Sbjct: 61  SAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLL-NPLAF 119

Query: 216 WAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEI 275
              +A + +  AY         K  +FL    +    GL              L      
Sbjct: 120 LLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPL------ 167

Query: 276 FTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS 335
                         + +    I  + D++GD+K G+K+L V+ G ++             
Sbjct: 168 ---LAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKAL----------- 213

Query: 336 MLSIAYGAAVVVGASSPFLA--NKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFI 393
            L++    A  +      LA    LI ++G  + A +   ++  VD+ D  +  + +   
Sbjct: 214 ALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVN 273

Query: 394 WKLYYAEYLLIPFVR 408
             L    ++ +    
Sbjct: 274 LLLGLLLFIGLILAV 288

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
           A+N   D EVD++N+P  P+ SG IS    + + +   ++ L  A +I    F+  ++  
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 222 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           +  G  Y+ +L      GN   +FL     +                   +G   E    
Sbjct: 115 VL-GILYNWKLKEYGLIGNLYVAFLTGMTFI--------------FGGIAVGELNEAVI- 158

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS 338
            L+ A AF+      I   KD+ DV+GD+  G +TL+++ G       +   R++ ++  
Sbjct: 159 -LLAAMAFLMTLGREIM--KDIEDVEGDRLRGARTLAILYG------EKIAGRIAAALFI 209

Query: 339 IAYGAAVVVGASSPFLAN 356
           +A     V+ +  P+L  
Sbjct: 210 LA-----VLLSPLPYLFG 222

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 21/162 (12%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN   D E+DK+N+P  PL  G +S    +  +L    + LA A +I    F++A+ A++
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
            +   Y+ +L  L + GN  +A     +        P+Y  I    +G          + 
Sbjct: 116 LM-FLYAWKLKPLPFIGNVVVALLTGAT--------PIYGAIAVGRIG----------LA 156

Query: 283 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKER 322
               I  F V +A   +KD+ D++GDK  G KTL +++GK+R
Sbjct: 157 GYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKR 198

Length = 277

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 39/182 (21%), Positives = 75/182 (41%), Gaps = 21/182 (11%)

Query: 146 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205
           L+  L+   L   +  +IN   D +VD +N+P  P+ SG IS+       L   +  L  
Sbjct: 40  LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLV 99

Query: 206 AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLR---WKGNSFLAAFCMVSLNGLLTQFPVYV 262
           A+++ +   +   +  I +   YS+    L+   W G   +       L  +        
Sbjct: 100 ALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGL-SYEGLPWM-------- 150

Query: 263 HIQKYVLGRPL--EIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 320
               + +  PL  +     L+++          I  + D   V+GD++ G+++L VM+G 
Sbjct: 151 --AGHAIFAPLTWQSVVVALIYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVMIGV 203

Query: 321 ER 322
           +R
Sbjct: 204 KR 205

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 30/193 (15%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
            +N   D EVD +N+PY P+ SG IS+   + +     ++ LA A ++    F+ A++  
Sbjct: 83  TLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLG- 141

Query: 222 IFVGTAYSVQLPLLR-----WKGNSFLAAFCMVSLNGL--LTQFPVYVHIQKYVLGRPLE 274
           +F+   YS   P LR     W GN  +      S  GL        +             
Sbjct: 142 LFLAWIYSA--PPLRLKQNGWLGNYAVGL----SYEGLPWWAGAAAFGAGLP-----SWP 190

Query: 275 IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV 334
           I    L+++          I  + D   V+GD++ G+++L V+ G       +   R++ 
Sbjct: 191 IVILALLYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVVFG------EKNAARIAC 239

Query: 335 SMLSIAYGAAVVV 347
            ++ +   A + +
Sbjct: 240 VVIDLFQLAVIAL 252

Length = 314

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 30/204 (14%)

Query: 153 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP 212
             L+   V  IN L+D+E D +NKP   + S   + G  + + +    +      +I  P
Sbjct: 45  TFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGP 104

Query: 213 PFIWAVIAWIFVGTAYSV-------QLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 265
            F    I  + +G  YSV       ++PL     N  ++      L  L        + Q
Sbjct: 105 KFALIFIIPLILGILYSVFFKRRLKRIPLF---KNLVVS-----LLWALSPLILGVYYYQ 156

Query: 266 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFF 325
             +           L+    FI     +   + D+ D++GD+K G+KTL ++LGKER   
Sbjct: 157 LTI--------FSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT-- 206

Query: 326 PQKVFRLSVSMLSIAYGAAVVVGA 349
                   + +L++ +   +++G 
Sbjct: 207 -----LKFLLILNLLFLILLILGV 225

Length = 285

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 23/164 (14%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
            IN + D+E+DK+NKP  P+ SG IS+      ++   ++ L  ++ I    F+ A++  
Sbjct: 55  VINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNS 114

Query: 222 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           I +   Y+  L      GN   ++L       + G L  F V   I              
Sbjct: 115 ILL-YLYAKDLKKTGLIGNLIVAYLTGL--SFIFGGLAVFNVLRII-------------- 157

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER 322
            ++F  AF S +   I  +KD+ D++GD K  + TL +  G ++
Sbjct: 158 -ILFLCAFFSTWSREI--VKDIEDIEGDLKENVITLPIKYGIKK 198

Length = 279

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 20/171 (11%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPF 214
           ++N   D+E+D+VN+P  P+ SG +S    +  ++   L+++   V +       R    
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127

Query: 215 IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE 274
           I +++A +FV   YS   P L+ K N   +A  +    G +T          ++    L 
Sbjct: 128 ISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFIT----------FLSANALF 175

Query: 275 IFTRPLMFATAFISCF-CVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLF 324
              RP +   A ++ F  + +  + D   V+GDK+ G+K+L+VM+G +  F
Sbjct: 176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTF 226

Length = 331

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 48/212 (22%), Positives = 82/212 (38%), Gaps = 25/212 (11%)

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI------RSP 212
           Y   IN   D ++D +N+PY P+ SG IS    I   +   +  +A A ++        P
Sbjct: 69  YTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFP 128

Query: 213 PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRP 272
                 +   F+   YS   P L+ K N +L  F + +          Y+ +  +     
Sbjct: 129 NVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGA---------SYIALPWWAGHAL 177

Query: 273 LEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL 332
                  +   T   S   + IA + D   V+GD+  G+++L V  G E   +      +
Sbjct: 178 FGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAW------I 231

Query: 333 SVSMLSIAYG--AAVVVGASSPFLANKLITII 362
            V  + I  G  AA ++       A  L+ +I
Sbjct: 232 CVGAIDIFQGLIAAYLLAIGENLYAAALVALI 263

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 47/223 (21%)

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMG---TGIAITLASALMSLAYAVMIRS---- 211
           Y   IN   D E+D +N+PY P+ SG IS     T I + L   L  LAY + + +    
Sbjct: 138 YTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL-GLAYTLDVWAGHDF 196

Query: 212 PPFIWAVIAWIFVGTAYSVQLPLLR-----WKGNSFLAA-------FCMVSLNGLLTQFP 259
           P   +  +    +   YS   P L+     W GN  L A       +   +L G LT   
Sbjct: 197 PIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLT--- 251

Query: 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG 319
                         ++    L+++ A +      IA + D   ++GD+  G+++L V  G
Sbjct: 252 -------------PDVVVLTLLYSIAGLG-----IAIVNDFKSIEGDRALGLQSLPVAFG 293

Query: 320 KERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITII 362
            E   +   V  + ++ LS+   A  ++    P+ A  L+ +I
Sbjct: 294 VETAKWIC-VGSIDITQLSV---AGYLLAIGKPYYALALLGLI 332

Length = 375

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 61/184 (33%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEIS-------------MGTGIAITL-----ASALMSL 203
           AIN   D E+D++N+P  P+ SG +S              G  +A  L     A AL + 
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 204 ----AYAVMIRSPPFIW-AVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258
                YA  ++  P +  A +A++                G++FL     V   GLL   
Sbjct: 116 LLLVLYAETLKGTPGLGNASVAYL---------------TGSTFLFGGAAVGTEGLLALL 160

Query: 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML 318
                                 +FA A ++     I  IKD+ D++GD+  G +TL +++
Sbjct: 161 V---------------------LFALAALATLAREI--IKDVEDIEGDRAEGARTLPILI 197

Query: 319 GKER 322
           G  +
Sbjct: 198 GVRK 201

Length = 276

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 158 IYVVAINQLSDVEVDK--VNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
           +Y+  +N L D+E D+    K   P ASG + +  G+A      L  LA A+ +  P F+
Sbjct: 242 VYI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL-GPAFL 298

Query: 216 WAVIAWIFVGTAYSVQL 232
             ++A++ +  AYS++L
Sbjct: 299 LVLLAYLALTLAYSLRL 315

Length = 479

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 51/247 (20%), Positives = 96/247 (38%), Gaps = 35/247 (14%)

Query: 134 TLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGI 192
           ++ADL +PA        L PA   ++++  +N + D + D++N               G 
Sbjct: 37  SVADLFSPAAVALFAYFLFPA---NVFLYGVNDVFDADTDELNPKK---DREREVRYRGD 90

Query: 193 AITLASALMS--LAYAVMIRSPPFIWAVI-AWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249
              L +  +S  LA A ++  PP  W  + A++ +   YS   P LR+K    L +    
Sbjct: 91  RRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDS---- 144

Query: 250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKF 309
             NGL        +I   V    L   + P + A A    + + +     + D++ D+  
Sbjct: 145 LSNGL--------YILPGVAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAA 196

Query: 310 GIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILAS 369
           GI+T + +LG+ R       +    +       AA    A    L    + ++   ++ +
Sbjct: 197 GIRTTATVLGERR------TYAYCAACWL---LAAAAFAAVDLRLG--ALLLVYPALVLA 245

Query: 370 IFWLRVR 376
           I    + 
Sbjct: 246 ILRAGIA 252

Length = 282

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 158 IYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
           +Y+  +N + DVE D++   K   P+ASG +S+     + +   + SLA A ++ SP   
Sbjct: 62  VYL--VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLL-SPKLA 118

Query: 216 WAVIAWIFVGTAYSVQL 232
             ++ ++ +  AYS +L
Sbjct: 119 LVLLVYLVLNLAYSFKL 135

Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	99.98
PRK13595	292	ubiA prenyltransferase; Provisional	99.98
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.97
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.96
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
PRK08238	479	hypothetical protein; Validated	99.95
PRK13105	282	ubiA prenyltransferase; Reviewed	99.95
PLN02922	315	prenyltransferase	99.95
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.95
PLN02776	341	prenyltransferase	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PRK12872	285	ubiA prenyltransferase; Reviewed	99.94
PRK12875	282	ubiA prenyltransferase; Reviewed	99.94
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.94
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.93
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.92
PRK13591	307	ubiA prenyltransferase; Provisional	99.92
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.91
PRK13592	299	ubiA prenyltransferase; Provisional	99.91
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.38
KOG4581	359	consensus Predicted membrane protein [Function unk	99.19
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	89.97
PRK12872	285	ubiA prenyltransferase; Reviewed	86.92
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	86.74
PRK13591	307	ubiA prenyltransferase; Provisional	86.72
PLN00012	375	chlorophyll synthetase; Provisional	86.33
PLN02922	315	prenyltransferase	85.79
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	85.7
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	84.38
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	84.31
PRK13105	282	ubiA prenyltransferase; Reviewed	83.3
PRK12875	282	ubiA prenyltransferase; Reviewed	82.84
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	82.66
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	81.9
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	81.65
PRK12392	331	bacteriochlorophyll c synthase; Provisional	80.88
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	80.67

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=7.9e-56  Score=424.07  Aligned_cols=275  Identities=57%  Similarity=1.020  Sum_probs=252.7

Q ss_pred             HHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHH
Q 015340          127 NSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA  206 (408)
Q Consensus       127 g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~l~~l~l~la  206 (408)
                      ..++|.+..+|.++.++.+++.+++++.+++.+..++||++|+|+||+|||+||+|||++|+++|+.++..+.++|++++
T Consensus         6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la   85 (280)
T PLN02878          6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG   85 (280)
T ss_pred             HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            35667676677776677788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHH
Q 015340          207 VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF  286 (408)
Q Consensus       207 ~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~  286 (408)
                      +.+|++++.+++..+++++++||.++||+|+||++++...|...++++..++|+|.|++++++|++ ..++++.++..++
T Consensus        86 ~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~-~~~~~~~~~~~~f  164 (280)
T PLN02878         86 WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRP-AVFTRPLIFATAF  164 (280)
T ss_pred             HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCc-cccchhHHHHHHH
Confidence            999988888877788789999998889999999999999999888889999999999999999975 3455566666667


Q ss_pred             HHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Q 015340          287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGI  366 (408)
Q Consensus       287 ~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i  366 (408)
                      ++++..+++++||++|+|||++.|+||+|+++|++++      .+++..++.++|+..++.|..++..+.+.++..+|.+
T Consensus       165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~------~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~  238 (280)
T PLN02878        165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRV------FWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGI  238 (280)
T ss_pred             HHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHH------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            7888899999999999999999999999999999999      9999999999999999999888888888899999999


Q ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhccccCC
Q 015340          367 LASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR  408 (408)
Q Consensus       367 ~a~~l~~~~~~vd~~~~~~~~~f~~~iw~l~~~ey~~~p~~~  408 (408)
                      ++..+|+|.+++|.+++++..+|||||||+||+||+++|++|
T Consensus       239 l~~~L~~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        239 LASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HHHHHHHHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=3.6e-53  Score=417.45  Aligned_cols=304  Identities=32%  Similarity=0.578  Sum_probs=254.3

Q ss_pred             chhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 015340           94 SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD  172 (408)
Q Consensus        94 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~-~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~D  172 (408)
                      |++.+++.++.+++|+|++|||+++++.++++.+.+++.....+. ....+...+.++++...++.+++.+||++|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            456678888899999999999999999999988887764322221 1112333445555556666666669999999999


Q ss_pred             ccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340          173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (408)
Q Consensus       173 r~nk~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~  252 (408)
                      |+|||+||++||++|+++++.+..++.++++.+++.+|++.+ +..+++.+++++||  .||+|+||+++.++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~-~~~~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLL-ITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHc--CCchhhcccchhHHHHHHHHH
Confidence            999999999999999999999999999999999999985544 44467888999999  599999999999999998888


Q ss_pred             hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL  332 (408)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i  332 (408)
                      |.++.+|.+.+......+.  ..++...+++.++.++|+.+++++||++|+|||++.|+||+|+++|+|++      .++
T Consensus       159 g~i~~~g~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a------~~l  230 (308)
T PRK12887        159 GVIVNLGLFLHFQWLLGGS--VLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAV------FKL  230 (308)
T ss_pred             HHHHHHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHH------HHH
Confidence            9888888876544322222  13456666777788899999999999999999999999999999999999      999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhccccCC
Q 015340          333 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR  408 (408)
Q Consensus       333 ~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~iw~l~~~ey~~~p~~~  408 (408)
                      +..++.++|+..++.+......+...++.++|++++.++++|.+++|.+|+++.++|||||||+||+||+++|+.|
T Consensus       231 ~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        231 SCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888887776666666677799999999999999999999999999999999999999999999865

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-36  Score=296.33  Aligned_cols=260  Identities=16%  Similarity=0.131  Sum_probs=205.3

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCCcc
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL  181 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~RPl  181 (408)
                      ++|+|+|++||++...+....+.|.++|.+...+  +.   .+++.+++.+++++++|++||+.|+|+|++|+  |+||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~--~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIH--PI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            4789999999999998888888899888543222  21   24456678889999999999999999999995  49999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHH
Q 015340          182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (408)
Q Consensus       182 asG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~  261 (408)
                      |+|++|+++|+.+..+++++++.+++.+|+.++.++. ....+...|++      +||+++++++.+|+..|..+..|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999999987766553 44555566774      7999999999998877754444443


Q ss_pred             HHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY  341 (408)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y  341 (408)
                           ++.|+.  +.....+++.+...+|+.++|++|++||+|+|+|.|+||+|+++|++++      .++...+..++.
T Consensus       150 -----Av~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~------~~i~~~~~~~~~  216 (286)
T PRK12895        150 -----AVIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNG------LYISDIFHISSL  216 (286)
T ss_pred             -----HHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccH------HHHHHHHHHHHH
Confidence                 234432  1223345667788999999999999999999999999999999999999      777766666666


Q ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHHH
Q 015340          342 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYMF  392 (408)
Q Consensus       342 ~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~-~~f~~~  392 (408)
                      ......|.... .+   +|.++.++.+..+.+|+..+|.+|+++| ..||..
T Consensus       217 ~~~~~~g~~~~-~~---~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~  264 (286)
T PRK12895        217 ILFWISGIYIR-TL---WYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNA  264 (286)
T ss_pred             HHHHHHHHHHh-hH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            66666665443 33   4557888889999999999999999999 666653

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=6.7e-36  Score=292.74  Aligned_cols=261  Identities=17%  Similarity=0.195  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHHHccchhHHHHH---HHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC
Q 015340          101 FLKKFHALYRFMRAYACAGVII---ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP  177 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l---~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~  177 (408)
                      .++++++|+|++|++++.+..+   +.+.|.++|.+..++  +.   .+++.+++.+++++++|++||++|+|+|++++|
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            4568899999999999887774   556788887554333  22   245677888999999999999999999987553


Q ss_pred             --CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhH
Q 015340          178 --YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (408)
Q Consensus       178 --~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~  255 (408)
                        +||+|||++|++++..+..++.++++.+++.+|+.++.+++ .+.++.+.||+      .||++.++++.+++.+|..
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence              89999999999999999999999999999989876666553 45556788985      6999989998887776654


Q ss_pred             HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS  335 (408)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~  335 (408)
                      +..|+..     +.|.    .+...+++.+..++|+.+++++|+++|+|+|+|+|+||+|+++|++++      .+++. 
T Consensus       153 ~l~g~~a-----~~g~----~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~------~~~~~-  216 (290)
T PRK12870        153 VLISWSA-----VTGH----LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAP------EAIGL-  216 (290)
T ss_pred             HHHHHHH-----HcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccH------HHHHH-
Confidence            4444332     3444    355566677788999999999999999999999999999999999998      66655 


Q ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHc--cCCCHHHHHHHHHH
Q 015340          336 MLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASILSFYMF  392 (408)
Q Consensus       336 ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~v--d~~~~~~~~~f~~~  392 (408)
                      +..+....+...++..+.++   .|..+..+.+..+.+++..+  |.+|++.|.+||..
T Consensus       217 ~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~  272 (290)
T PRK12870        217 FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQ  272 (290)
T ss_pred             HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence            33334444445566655555   33356677788889999888  87889888888764

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=1.8e-35  Score=289.15  Aligned_cols=260  Identities=18%  Similarity=0.161  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHHccchhHHHHHHH---HHHHHhcc--ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 015340          102 LKKFHALYRFMRAYACAGVIIAT---TSNSLLPV--QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (408)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~---~~g~llA~--~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk  176 (408)
                      ++++++|+|++|.+++.+..+..   ..|..++.  +..++  +.   .+++.+++..++++++|++||++|+|+|++|+
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~--~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~   77 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD--LK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVE   77 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            46899999999999987776655   34555543  22222  21   24567888899999999999999999999876


Q ss_pred             --CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340          177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (408)
Q Consensus       177 --~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~  254 (408)
                        |+||+|+|++|+++++.+..++.++++.+++.+|..++.++ +++.++.+.||+      +||++.++++.+++..+.
T Consensus        78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~  150 (289)
T PLN02809         78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW  150 (289)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence              49999999999999999999999999999998887666555 355666789985      799999999988776554


Q ss_pred             HHHHHHHHHHHHHHhcCCcccCcHHHH-HHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHH
Q 015340          255 LTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLS  333 (408)
Q Consensus       255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i-~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~  333 (408)
                      .+.+|+.     ++.|+.    +...+ .++....+|+.+++++++++|+|||+|.|+||+|+++|++..      .+++
T Consensus       151 ~~l~g~~-----av~g~~----~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~------~~i~  215 (289)
T PLN02809        151 GALLGWA-----AVKGSL----DPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTK------LWLT  215 (289)
T ss_pred             HHHHHHH-----HHhCCC----ChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHH------HHHH
Confidence            4444432     344542    33333 366678889999999999999999999999999999999977      6666


Q ss_pred             HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340          334 VSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  392 (408)
Q Consensus       334 ~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~  392 (408)
                      . +..+++..+..+|......+   .+.+++.+.+..+++|++.+|.+|+++|.++|..
T Consensus       216 ~-~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~~  270 (289)
T PLN02809        216 G-FGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFVS  270 (289)
T ss_pred             H-HHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4 56666776667777666655   3335788888899999999999999999888763

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=1.6e-35  Score=289.11  Aligned_cols=261  Identities=20%  Similarity=0.227  Sum_probs=203.4

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC--CCCCcc
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPL  181 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~n--k~~RPl  181 (408)
                      ++++|+|++||++...+.+....|.++|.+..++  +.   ..++.+++.+++++++|++||++|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            3689999999999999877777788888554333  22   2556788999999999999999999999998  569999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHH
Q 015340          182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (408)
Q Consensus       182 asG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~  261 (408)
                      |+|++|++++..+..++.++++.+++.+|..+..++. .+.++.+.|+.      +||++.++++++++..|..+..|+.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~  148 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV  148 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888888888888866655443 44555788984      7999999999988776655545543


Q ss_pred             HHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY  341 (408)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y  341 (408)
                      .     +.|..  +.....+++....++|+.+++++||++|+|+|+++|+||+|+++|+|++      .+++.....+++
T Consensus       149 a-----~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a------~~~~~~~~~~~~  215 (282)
T TIGR01475       149 A-----VIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAA------LKIASLSHVITF  215 (282)
T ss_pred             H-----HhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHH------HHHHHHHHHHHH
Confidence            2     33442  1114455666778899999999999999999999999999999999988      777777677777


Q ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHH-HHHH
Q 015340          342 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS-FYMF  392 (408)
Q Consensus       342 ~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~-f~~~  392 (408)
                      .+.++.+...+.++   .|.++..+.+..+.++.+.+|.+|+++|++ |+..
T Consensus       216 ~~~~~~~~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~  264 (282)
T TIGR01475       216 ILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA  264 (282)
T ss_pred             HHHHHHHHHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            76666666555555   333455566678889999999999988876 5554

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-35  Score=291.16  Aligned_cols=275  Identities=15%  Similarity=0.175  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--C
Q 015340          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--P  177 (408)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~  177 (408)
                      ..++++++|+|++||++.+...++.+.|.++|.+..++  +.   .+++.+++.+++++++|++||++|+|+|++|+  |
T Consensus        10 ~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~   84 (300)
T PRK13106         10 NTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK   84 (300)
T ss_pred             hhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence            35668999999999999999988888899888654333  22   24567789999999999999999999999985  5


Q ss_pred             CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHH
Q 015340          178 YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (408)
Q Consensus       178 ~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~  257 (408)
                      +||+|+|++|+++++.+..++.+.++.+++.+|+.+..++. +..++...|++      +||++.++++.+++.+|..+.
T Consensus        85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~  157 (300)
T PRK13106         85 NRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAVF  157 (300)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHHH
Confidence            89999999999999999877777777777888876665553 44455678984      799999999999887775555


Q ss_pred             HHHHHHHHHHHhcCCcc----cCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHH
Q 015340          258 FPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLS  333 (408)
Q Consensus       258 lg~~~~~~~~v~g~~~~----~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~  333 (408)
                      .|+..     +.|....    ..+...+++....++|+.++|++|++||+|+|+|.|+||+|+++| +++      .+++
T Consensus       158 ~G~~a-----~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a------~~~~  225 (300)
T PRK13106        158 SGAVA-----VLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWA------LTFA  225 (300)
T ss_pred             HHHHH-----HcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhH------HHHH
Confidence            55533     2342200    112334555667889999999999999999999999999999999 777      6777


Q ss_pred             HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH-------HHHHHHHHHhc
Q 015340          334 VSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF-------IWKLYYAEYLL  403 (408)
Q Consensus       334 ~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~-------iw~l~~~ey~~  403 (408)
                      ..+..++-.+..+.+.....++   .|..+..+...++.+|+..++.+  +.|...|..       ++.++.+++++
T Consensus       226 ~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F~~n~~ig~~~~~~~~~~~~~  297 (300)
T PRK13106        226 GLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK--GDFGRAFYYNIYSSIVLGLGIIIDVLL  297 (300)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            7776666666666676666665   34457777888999999999876  556444442       55556666543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.3e-35  Score=286.39  Aligned_cols=265  Identities=18%  Similarity=0.173  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccC---CCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 015340          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL---ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (408)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~---~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk  176 (408)
                      +.++++++|+|++||++.+.+....+.|.++|....   ...++.   .+++++++.+++++++|++||++|+|+|++|+
T Consensus         3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~   79 (291)
T PRK12874          3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNP   79 (291)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence            355689999999999999999888888888775211   112332   25667888899999999999999999999998


Q ss_pred             C--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340          177 P--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (408)
Q Consensus       177 ~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~  254 (408)
                      |  +||+|||++|+++++.++.++.++++.+++.+|+.+..+. +..+++...||+      +||++.++++.+++..|.
T Consensus        80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~  152 (291)
T PRK12874         80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGL  152 (291)
T ss_pred             CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHH
Confidence            4  8999999999999999999888888888888887766555 345556788995      799999999999887776


Q ss_pred             HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHH
Q 015340          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV  334 (408)
Q Consensus       255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~  334 (408)
                      .+.+|+..     +.|.    .+.+.+++.+..++|+.+++++|+++|+|+|+++|+||+|+++|++++      .++..
T Consensus       153 ~~l~G~~a-----v~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~------~~~~~  217 (291)
T PRK12874        153 APIAGVVA-----VLGE----IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKAT------LFISR  217 (291)
T ss_pred             HHHHHHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhH------HHHHH
Confidence            66566543     4444    355556666778899999999999999999999999999999999998      55554


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340          335 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  392 (408)
Q Consensus       335 ~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~  392 (408)
                      ....+.....+..+......+   ++.++..+.+..+.++.+.++.+|++.|+.||..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~s  272 (291)
T PRK12874        218 LFHLLAVLFWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTL  272 (291)
T ss_pred             HHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            444444444444444333333   3445666778888899888887778789888775

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.3e-35  Score=283.74  Aligned_cols=268  Identities=17%  Similarity=0.161  Sum_probs=206.1

Q ss_pred             HHHHHHHHccchhHHHHHHHHHHHHhcc---ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCC
Q 015340          105 FHALYRFMRAYACAGVIIATTSNSLLPV---QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (408)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~---~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~R  179 (408)
                      +++++++.|+++.+......+.+.+.+.   ++.  +++.   .+++.+++.+++++++|++||++|+|+|++|+  |+|
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~R   76 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGS--VHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGR   76 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCC
Confidence            6789999999998876665555555553   222  2232   24567889999999999999999999999998  589


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHH
Q 015340          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (408)
Q Consensus       180 PlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg  259 (408)
                      |+|+|++|+++++.+..++..+++.++..+|+.++.++. ++++....|++      .||++.++++.+++..+..+..|
T Consensus        77 PL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g  149 (284)
T PRK12888         77 ELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGA  149 (284)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHH
Confidence            999999999999999988888888888888876665543 44445678985      69999999999887766444444


Q ss_pred             HHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHH
Q 015340          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSI  339 (408)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~  339 (408)
                      ++.     +.|.    .++..+++.+..++|+.+++++|++||+|+|++.|+||+|+++|+|++      .+++..+..+
T Consensus       150 ~~a-----~~g~----~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a------~~~~~~~~~~  214 (284)
T PRK12888        150 WIA-----VTGT----WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAA------LWASRVAHVV  214 (284)
T ss_pred             HHH-----HcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhH------HHHHHHHHHH
Confidence            332     3344    355667777788999999999999999999999999999999999999      6766666666


Q ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHH-H------HHHHHHHHHh
Q 015340          340 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFYM-F------IWKLYYAEYL  402 (408)
Q Consensus       340 ~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~-~f~~-~------iw~l~~~ey~  402 (408)
                      .+.+..+.+.....++   .|..+..+.+..+.+|++.+|.+|++.|. .||. .      ++.++.++++
T Consensus       215 ~~~ll~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ig~~~~~~~~~~~~  282 (284)
T PRK12888        215 TFALFVWFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGFVGIALFGFALLDLL  282 (284)
T ss_pred             HHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            6666666666666666   33457778889999999999999999886 6562 2      5555555553

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.4e-35  Score=284.78  Aligned_cols=266  Identities=15%  Similarity=0.047  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHccchhHHHHHHHH---HHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC-
Q 015340          102 LKKFHALYRFMRAYACAGVIIATT---SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP-  177 (408)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~---~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~-  177 (408)
                      ++++++|+|++|+++|.++.+.++   .|.+++.+..++  ..   .++..+++.+++++++|++||+.|+|+|++|+| 
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~--~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT   78 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS--LL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT   78 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence            346889999999999999888764   566666433222  21   256788899999999999999999999998765 


Q ss_pred             -CCcccccccChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340          178 -YLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (408)
Q Consensus       178 -~RPlasG~is~~~a~~~~~~l~~l~l~la~~l----~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~  252 (408)
                       +||+|+|++|+++|+.+..++.++++.+++.+    |..++.+++ ++++....||+      +||++.+.++.+++..
T Consensus        79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~  151 (294)
T PRK12873         79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCW  151 (294)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHH
Confidence             99999999999999999999999998887765    444555443 44456788995      7999999999998776


Q ss_pred             hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL  332 (408)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i  332 (408)
                      +..+.+|+.     ++.|+.  +.....+++++..++|+.++|++++++|+|||+|+|+||+|+++|++..       .+
T Consensus       152 a~~~l~gw~-----Av~g~~--~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-------~~  217 (294)
T PRK12873        152 GFAVLIPWA-----AAEGSL--NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-------KT  217 (294)
T ss_pred             HhHHHHHHH-----HHhCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-------HH
Confidence            655555543     344543  2222344555778999999999999999999999999999999997544       55


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCC--HHHHHHHHHH-HHHH
Q 015340          333 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASILSFYMF-IWKL  396 (408)
Q Consensus       333 ~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~--~~~~~~f~~~-iw~l  396 (408)
                      ...+..++..++..+|.....++   .|.++.++.+..+.+|+..+|.+|  +++|.++|.. .|-+
T Consensus       218 ~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G  281 (294)
T PRK12873        218 VQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILG  281 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHH
Confidence            56666666666677787777766   344677777889999999999887  4788666553 4443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.7e-34  Score=278.68  Aligned_cols=266  Identities=17%  Similarity=0.163  Sum_probs=199.6

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC--C
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y  178 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~--~  178 (408)
                      .-+++++|+|++||++...+......|.++|..+.++  +.   .+++..++.+++++++|++||++|+|+|++|+|  +
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            3467889999999999998888788898888544333  21   245677889999999999999999999999985  8


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHH
Q 015340          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (408)
Q Consensus       179 RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~l  258 (408)
                      ||+|+|++|++++..+...+.+.++.+++.+|+++..+++ +..++...||+      +||++.++++.+++.++..+..
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~  151 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence            9999999999999998766666666666778876665553 34555788995      6999999999988776655444


Q ss_pred             HHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHH
Q 015340          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS  338 (408)
Q Consensus       259 g~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~  338 (408)
                      |++.     +.|+    .+.+.+++.+..++|+.+++++++++|+|||+|+|+||+|+++|++++      .++......
T Consensus       152 g~~a-----~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~------~~~~~~~~~  216 (291)
T PRK12886        152 AWIA-----IRGT----IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGS------LWIARVFHL  216 (291)
T ss_pred             HHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhH------HHHHHHHHH
Confidence            4332     3344    355666777778999999999999999999999999999999999998      666655555


Q ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCH-HHHHHHH-HHHHHH
Q 015340          339 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASILSFY-MFIWKL  396 (408)
Q Consensus       339 ~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~-~~~~~f~-~~iw~l  396 (408)
                      +.+.+.+..+.....++   .|.++..+....+.++.+.++.+|+ +.|+++| ..+|.+
T Consensus       217 ~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~  273 (291)
T PRK12886        217 LMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYIS  273 (291)
T ss_pred             HHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHHH
Confidence            55555555555444454   3344555666666678888888884 5776644 444444

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=4e-34  Score=279.33  Aligned_cols=259  Identities=17%  Similarity=0.174  Sum_probs=196.5

Q ss_pred             HHHHHHHHHHHccchhHHHHHH---HHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--
Q 015340          102 LKKFHALYRFMRAYACAGVIIA---TTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (408)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~---~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--  176 (408)
                      ++++++|++++|++++.++.+.   .+.|.++|.+..++  ..   .+++.+++.+++++++|++||++|+|+|++++  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            3578999999999888766654   45677777543333  21   24556778889999999999999999999765  


Q ss_pred             CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (408)
Q Consensus       177 ~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~  256 (408)
                      |+||+|||++|++++..++.++.++++.+++.+|+..+.++ +++.++.+.|++      .||++.++++.+++..|..+
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence            48999999999999999999999999998888886665554 455566788974      69998889998887777555


Q ss_pred             HHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHH
Q 015340          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSM  336 (408)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~l  336 (408)
                      .+++..     +.|.    .+...+++.....+|+...+++++++|+|||+++|+||+|+++|+|++      .++.. +
T Consensus       150 ~~g~~a-----~~~~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~------~~~~~-~  213 (282)
T PRK12848        150 PMAFAA-----VQGS----VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDK------LIIGL-L  213 (282)
T ss_pred             HHHHHH-----HhCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccH------HHHHH-H
Confidence            444432     2333    355666777778999999999999999999999999999999999988      55543 3


Q ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Q 015340          337 LSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM  391 (408)
Q Consensus       337 l~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~  391 (408)
                      ..+......+.+.....++   .|.++..+....+.+++..+|.+|+++|.++|.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~  265 (282)
T PRK12848        214 QLATLALLAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKAFL  265 (282)
T ss_pred             HHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            3333333344454444444   344567778888899999999999888866664

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.3e-34  Score=277.38  Aligned_cols=278  Identities=12%  Similarity=0.146  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHHhcc------cc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 015340          103 KKFHALYRFMRAYACAGVIIATTSNSLLPV------QT---LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDK  173 (408)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~------~~---~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr  173 (408)
                      ++++.|.++.|.++.+........|.++|.      ++   .++     +..+++..++.+++++++|++||+.|+|+|+
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~   76 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGG-----IKTISLGGSAFFCARTVGIIVNQIIDCAIDK   76 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCC-----HHHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Confidence            358899999998776666555567888885      22   222     2235678899999999999999999999999


Q ss_pred             cCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHh
Q 015340          174 VNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL  251 (408)
Q Consensus       174 ~nk~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~  251 (408)
                      +|+|  +||+|+|++|+++++.+..++.++++.+++.+|+.++.++. +++++...||+      +||+++++++.+++.
T Consensus        77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~  149 (300)
T PRK12876         77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLV  149 (300)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHH
Confidence            9985  99999999999999999988888888888889977776664 45555688985      799999999998876


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCcccCcH----HHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCch
Q 015340          252 NGLLTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQ  327 (408)
Q Consensus       252 ~g~~~~lg~~~~~~~~v~g~~~~~~~~----~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~  327 (408)
                      .+..+..++.     ++.|++   .++    ..+++.....+|+.++|++|++||+|+|++.|+||+|+++|++++    
T Consensus       150 ~~~~~l~~~~-----Av~~~~---~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a----  217 (300)
T PRK12876        150 YYLAILMNFF-----AIIETP---LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKA----  217 (300)
T ss_pred             HHHHHHHHHH-----HHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhH----
Confidence            6544434433     234442   222    233445566778889999999999999999999999999999988    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HHHHHHccCCCHHHHHHHHHH---HHHHHHHHHh
Q 015340          328 KVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF--WLRVRAVDLSDNASILSFYMF---IWKLYYAEYL  402 (408)
Q Consensus       328 ~l~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l--~~~~~~vd~~~~~~~~~f~~~---iw~l~~~ey~  402 (408)
                        .++......++...+++.|.....++  .++..+.++.+..+  .+|.+.+|.++++.|..||..   |--.+++.++
T Consensus       218 --~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~  293 (300)
T PRK12876        218 --IRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMI  293 (300)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHH
Confidence              67777666666666666776666555  23444554333333  455577888889999998875   4445556666


Q ss_pred             ccccCC
Q 015340          403 LIPFVR  408 (408)
Q Consensus       403 ~~p~~~  408 (408)
                      ..|+.|
T Consensus       294 ~~~~~~  299 (300)
T PRK12876        294 GLFLLR  299 (300)
T ss_pred             HHHccC
Confidence            655544

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=4.5e-34  Score=279.90  Aligned_cols=271  Identities=23%  Similarity=0.315  Sum_probs=210.8

Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHH---HHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q 015340          100 VFLKKFHALYRFMRAYACAGVIIATT---SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (408)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~---~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk  176 (408)
                      ..+++++.+.+++|+++++++.+.+.   .|..++....++     +...++++++++++++++|++||+.|+|+||+|+
T Consensus         5 ~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~   79 (289)
T COG0382           5 SLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINP   79 (289)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCC
Confidence            45567778888888888887776654   455555422222     2246778899999999999999999999999999


Q ss_pred             C--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340          177 P--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (408)
Q Consensus       177 ~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~  254 (408)
                      |  +||+|||++|+++++.+.++++++++.+++.+|++.+.+. +++.++.++|+      ++||.+++++++++..+|.
T Consensus        80 rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~  152 (289)
T COG0382          80 RTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAYP------FLKRFTFLPQLVLGLAFGL  152 (289)
T ss_pred             CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH------HhhcCCchHHHHHHHHHHH
Confidence            8  9999999999999999999999999999999997665544 57788889995      4899999999999988876


Q ss_pred             HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHH
Q 015340          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV  334 (408)
Q Consensus       255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~  334 (408)
                      .+..|+..     +.|.    .+.+.++++++..+|+.+++++||++|+|+|++.|+||+|+.+|++++      .+++.
T Consensus       153 ~~~~g~~a-----~~~~----~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a------~~l~~  217 (289)
T COG0382         153 GALAGAAA-----VGGS----LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKA------LALAL  217 (289)
T ss_pred             HHHHHHHH-----HhCc----cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhH------HHHHH
Confidence            66555543     2332    255667788889999999999999999999999999999999999999      77777


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 015340          335 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAE  400 (408)
Q Consensus       335 ~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~iw~l~~~e  400 (408)
                      ... ........++.......  ..+..+..+.+..+.+|...+|.+|++.|+.++..-...-...
T Consensus       218 ~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (289)
T COG0382         218 LLL-LASALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLL  280 (289)
T ss_pred             HHH-HHHHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHH
Confidence            655 44444444444333221  2445677788888999999999889999999887644433333

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-33  Score=275.22  Aligned_cols=267  Identities=17%  Similarity=0.192  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHHHccchhHHH---HHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC-
Q 015340          101 FLKKFHALYRFMRAYACAGV---IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-  176 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~---~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk-  176 (408)
                      .++++++|++++||+++.+.   .++.+.|.++|.... ..++.   ..++.+++.+++++++|++||++|+|.|++|+ 
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            34578999999999988764   466677888875432 12222   25667888899999999999999999999866 


Q ss_pred             -CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhH
Q 015340          177 -PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (408)
Q Consensus       177 -~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~  255 (408)
                       ++||+|+|++|++++..++.++.++++.+++.+|+..+..+ +++.++.+.||+      .||++.+++++.++.++..
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~  151 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMG  151 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence             48999999999999999999999999998888886665554 455666889985      6999888998887765543


Q ss_pred             HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS  335 (408)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~  335 (408)
                      +..++..     +.|.    .+...+++.+..++|+.+++++++++|+|+|+|+|+||+|+++|++++      .+++..
T Consensus       152 ~l~~~~a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a------~~~~~~  216 (285)
T PRK12847        152 ILMAFAA-----VQNQ----LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTR------KYILRL  216 (285)
T ss_pred             HHHHHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccH------HHHHHH
Confidence            3333322     3343    355666777788999999999999999999999999999999999999      777665


Q ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH-HHHHHH
Q 015340          336 MLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWKLY  397 (408)
Q Consensus       336 ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~-~iw~l~  397 (408)
                      .....+.+. +.+...+..+  .++ ++.++....+.++...+|.+|+++|+++|. .++.++
T Consensus       217 ~~~~~~~~~-~~~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  275 (285)
T PRK12847        217 YIISLILWL-ILGIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVGL  275 (285)
T ss_pred             HHHHHHHHH-HHHHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHH
Confidence            554444433 3344444332  233 244445668888888999888877765554 455443

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.6e-34  Score=275.80  Aligned_cols=265  Identities=18%  Similarity=0.204  Sum_probs=191.3

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccc
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlas  183 (408)
                      ++++|++++||++...+.++.+.|.+++.+..++  ..   ..++.+++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            3789999999999999999999999988543221  11   145678888999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHH
Q 015340          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (408)
Q Consensus       184 G~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~  263 (408)
                      |++|+++++.++.++.++++.+++.+|+..+... +++.++.+.||.     |+||++.+++++++...|..+.+|..  
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~--  149 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA--  149 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999998886555444 455566789984     68999999999887766654444432  


Q ss_pred             HHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHH
Q 015340          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGA  343 (408)
Q Consensus       264 ~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~  343 (408)
                          ..+..   .....+.+....++|+.+++++||++|+|||+++|+||+|+++|+|++      .+++.....+....
T Consensus       150 ----~~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t------~~~~~~~~~~~~~~  216 (276)
T PRK12882        150 ----AVGTE---GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKA------LYVAAAFLLVAVAA  216 (276)
T ss_pred             ----Hhccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHH------HHHHHHHHHHHHHH
Confidence                22321   122334445556678889999999999999999999999999999999      66655443333322


Q ss_pred             HHHHHH-hcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH-HHHHHH
Q 015340          344 AVVVGA-SSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWKLY  397 (408)
Q Consensus       344 ~i~~g~-~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~-~iw~l~  397 (408)
                      . ..++ ....++  .++..........+....+..|.+|++.|+++|. .+|-++
T Consensus       217 ~-~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~g~  269 (276)
T PRK12882        217 S-PLPYLLSTFGL--WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMFLAL  269 (276)
T ss_pred             H-HHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            2 2221 122233  2222222333444555667778888888866554 455544

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=1.9e-33  Score=279.38  Aligned_cols=255  Identities=19%  Similarity=0.297  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL-ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~-~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~R  179 (408)
                      ..+++|+|++++||+++. ..++.+.|.++|.+.. ++.....+ .+...++...+..+++|++||++|+|+|++|||.|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            445689999999999888 6677777777775422 22211111 12222334445667789999999999999999999


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340          180 PLASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (408)
Q Consensus       180 PlasG~is~~~a~~~~~~l~~l~l~la~~l~~-------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~  252 (408)
                      |+++|++|+++++.+..++.++++.+++.++.       +.+++..+++++++++||  .||+++||+++++...+++.+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~  163 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYS--APPLKLKKNILTSAPAVGFSY  163 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhc--CCchhhhccchhHHHHHHHHH
Confidence            99999999999999999999888887776542       223333346677889999  489999999988888887766


Q ss_pred             hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL  332 (408)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i  332 (408)
                      +.....+.     ...+|.    .+...+++.+..++|+.+++++||++|+|||++.|+||+|+++|++++      .++
T Consensus       164 ~~~~~~~~-----~a~~g~----~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a------~~i  228 (331)
T PRK12392        164 GFITFLSA-----NALFSD----IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT------FLV  228 (331)
T ss_pred             HHHHHHHH-----HHHhcC----CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhH------HHH
Confidence            64333222     223443    345555666678889999999999999999999999999999999999      787


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Q 015340          333 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRA  377 (408)
Q Consensus       333 ~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~  377 (408)
                      +.....+.....+..+......+.  + ....++.+..+++|.+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~q~~l  270 (331)
T PRK12392        229 SFIIIDLVFAVFAWLAWSWGFTVL--M-YFILVGLVLNIVIQIQL  270 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHH--H-HHHHHHHHHHHHHHHHH
Confidence            776665666666666666665542  2 23444555666666654

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=274.61  Aligned_cols=259  Identities=19%  Similarity=0.267  Sum_probs=195.3

Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccc
Q 015340          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA  182 (408)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPla  182 (408)
                      +++++|++++||+++..+.++.+.|.++|.+..+   +.   .+++.+++.+++++++|++||++|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            4789999999999999999999999988865332   11   24567788999999999999999999999999999999


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHH
Q 015340          183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV  262 (408)
Q Consensus       183 sG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~  262 (408)
                      +|++|+++++.++.++.+++++++..+|+..+... +++.++++.||.     ++||+++++++++++.+|.....++..
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988886555444 456677899995     579999989999887777554444322


Q ss_pred             HHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHH
Q 015340          263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYG  342 (408)
Q Consensus       263 ~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~  342 (408)
                            .+..    +...+++....++|+.+.++++|++|+|||+++|+||+|+++|+|++      .+++.....+.+.
T Consensus       150 ------~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~------~~~~~~~~~~~~~  213 (279)
T PRK12884        150 ------VGEL----NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIA------GRIAAALFILAVL  213 (279)
T ss_pred             ------hCCC----chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHH------HHHHHHHHHHHHH
Confidence                  2322    22445555667788899999999999999999999999999999999      7777666666665


Q ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH-HHccCCCHHHHHHHHHH
Q 015340          343 AAVVVGASSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSFYMF  392 (408)
Q Consensus       343 ~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~-~~vd~~~~~~~~~f~~~  392 (408)
                      ..++.+.....++   .|.....+....+.++. +..+.+|++.++.+...
T Consensus       214 ~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  261 (279)
T PRK12884        214 LSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKI  261 (279)
T ss_pred             HHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            4443333222233   23344445555555664 55666677776666433

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=2.2e-33  Score=273.92  Aligned_cols=259  Identities=17%  Similarity=0.174  Sum_probs=191.2

Q ss_pred             HHHHHHHHccchhHHHHHHH---HHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCC
Q 015340          105 FHALYRFMRAYACAGVIIAT---TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (408)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~---~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~R  179 (408)
                      +++|.|++|++++.++.+..   +.|..+|.......++.   ..++..++..++++++|++||++|+|.|++|+  |+|
T Consensus         1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R   77 (281)
T TIGR01474         1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR   77 (281)
T ss_pred             ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence            35789999988887765544   46777774311111121   14556678889999999999999999999765  489


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHH
Q 015340          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (408)
Q Consensus       180 PlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg  259 (408)
                      |+|+|++|++++..+..++.++++.+++.+|+....++ ++++++.+.||.      .||++.++++..++.++..+..|
T Consensus        78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g  150 (281)
T TIGR01474        78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGALMG  150 (281)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988886666555 456667899994      79999999998887666555555


Q ss_pred             HHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHH
Q 015340          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSI  339 (408)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~  339 (408)
                      ++.     +.|.    .+...+++.....+|+.+++++|+++|+|+|+|+|+||+|+++|++++       ++...+..+
T Consensus       151 ~~a-----~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~-------~~~~~~~~~  214 (281)
T TIGR01474       151 WAA-----VTGD----LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTK-------PWLGGLYAL  214 (281)
T ss_pred             HHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhH-------HHHHHHHHH
Confidence            432     3443    355555566778899999999999999999999999999999998877       333333333


Q ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340          340 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  392 (408)
Q Consensus       340 ~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~  392 (408)
                      +.....+.+.....++   .|.++..+.+..+.++...+|.+|+++|+++|..
T Consensus       215 ~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~  264 (281)
T TIGR01474       215 MILLLALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKA  264 (281)
T ss_pred             HHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3333334444444444   3345666778888889888888888877776653

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=4.5e-33  Score=275.37  Aligned_cols=267  Identities=15%  Similarity=0.098  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHHHH---ccchhHHHHHHHHHHHHhccccCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 015340           97 FLNVFLKKFHALYRFM---RAYACAGVIIATTSNSLLPVQTLA---DLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE  170 (408)
Q Consensus        97 ~~~~~~~~l~~~~~l~---Rp~~~~~~~l~~~~g~llA~~~~~---~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e  170 (408)
                      +.+..++++++|++++   ||+......++.+.|.++|.+...   ..++.   ..+++.++.+++++++|++||++|+|
T Consensus        22 ~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~   98 (314)
T PRK12878         22 VDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRD   98 (314)
T ss_pred             hhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344778999999999   666777778888889998865311   22322   25567889999999999999999999


Q ss_pred             ccccCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHH
Q 015340          171 VDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCM  248 (408)
Q Consensus       171 ~Dr~nk~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l  248 (408)
                      +|++++|  +||+|+|++|++++..+..++.++|+.+.+..|++.+.++ ++++++.+.|+.      .||++.+++...
T Consensus        99 iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~  171 (314)
T PRK12878         99 IDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFL  171 (314)
T ss_pred             cccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHH
Confidence            9998764  8999999999999999999999999998888886655554 456666889984      799888888877


Q ss_pred             HHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchh
Q 015340          249 VSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQK  328 (408)
Q Consensus       249 ~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~  328 (408)
                      ++..+..+..|++.     +.|+    ++...+++++..++|+.+.+.+++++|+|+|+|+|+||+|+++|++++     
T Consensus       172 Gl~~~~~~l~g~~a-----~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~-----  237 (314)
T PRK12878        172 GLAFSWGALMGWAA-----HFGS----LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTK-----  237 (314)
T ss_pred             HHHHHHHHHHHHHH-----HhCC----CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhH-----
Confidence            76555444445432     3344    355566667778899999999999999999999999999999999998     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340          329 VFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  392 (408)
Q Consensus       329 l~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~  392 (408)
                       .++.... .+......+.+.....++   .+.++.......+.++...+|.+|++.|+++|..
T Consensus       238 -~~~~~~~-~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~  296 (314)
T PRK12878        238 -TWLVLFY-GLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS  296 (314)
T ss_pred             -HHHHHHH-HHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence             5655433 333333333443333444   2334555556678899999988888888777763

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.6e-33  Score=274.76  Aligned_cols=254  Identities=20%  Similarity=0.252  Sum_probs=188.1

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccc
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlas  183 (408)
                      ++++|++++||+++..+.++.+.|.+++.+...+  +.   .+++++++.+++++++|++||++|+|+|++|+|+||+||
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKID--LK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcc--hH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            3688999999999999999999998888543222  21   255678889999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHH
Q 015340          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (408)
Q Consensus       184 G~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~  263 (408)
                      |++|+++++.++.++.++++.+++.+|++.+..+ +++.++.+.||.     ++||++.+++++++...|..+..|+.. 
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-  149 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-  149 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999988887666555 455666789984     489999999999988887665555432 


Q ss_pred             HHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHH
Q 015340          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGA  343 (408)
Q Consensus       264 ~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~  343 (408)
                          +.+      ....+++....++|+.+++++||++|+|+|+++|+||+|+++|+|++      .+++.....+....
T Consensus       150 ----~~~------~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a------~~~~~~~~~~~~~~  213 (279)
T PRK09573        150 ----VFN------VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKS------WYIAKILLILAIVL  213 (279)
T ss_pred             ----Hcc------chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHH------HHHHHHHHHHHHHH
Confidence                222      12234455566788889999999999999999999999999999999      66655444333332


Q ss_pred             HHHHHHhcC-cchHHHHHHHHHHHHHHHHHHHH-HHccCCCHHHHHHH
Q 015340          344 AVVVGASSP-FLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSF  389 (408)
Q Consensus       344 ~i~~g~~~~-~~~~~~~~~~~~~i~a~~l~~~~-~~vd~~~~~~~~~f  389 (408)
                      .. ...... .++   .|..+..+....+.++. +..+.+|++.|+..
T Consensus       214 ~~-~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (279)
T PRK09573        214 SP-LPYFLGIFGI---YYLIVVIICDILFIIAMLILLKNPSIEGASKA  257 (279)
T ss_pred             HH-HHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence            22 121111 223   34445555555555553 34455566665544

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=5.8e-33  Score=279.54  Aligned_cols=224  Identities=20%  Similarity=0.302  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCC
Q 015340          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY  178 (408)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~  178 (408)
                      ...+++++|++++||++|..+++++++|.... +.+ ++.+. ....++.++++..++++++|++|||+|+|+|++|+|+
T Consensus        80 ~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~  157 (375)
T PLN00012         80 QETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY  157 (375)
T ss_pred             cchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence            35678899999999999999999988888753 322 22211 1112356777888999999999999999999999999


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (408)
Q Consensus       179 RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~  252 (408)
                      ||+++|++|+++++....++.++++.+++.++.      +......+++++++++||  .||+++||+++++++.++..+
T Consensus       158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~  235 (375)
T PLN00012        158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYS--APPLKLKQNGWIGNYALGASY  235 (375)
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhc--CCchhhhHhccHhHHHHHHHH
Confidence            999999999999999777777766666655421      222222345667789999  489999999999998877655


Q ss_pred             hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL  332 (408)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i  332 (408)
                      +.++   ++..  ..++|.    ++...+++.+..++|..+++++||++|+|+|++.|+||+||++|++++      .++
T Consensus       236 ~~lp---~~~g--~a~~g~----~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a------~~l  300 (375)
T PLN00012        236 ISLP---WWAG--QALFGT----LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETA------KWI  300 (375)
T ss_pred             HHHH---HHHH--HHHcCC----CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHH------HHH
Confidence            4332   2211  123454    355566666677788899999999999999999999999999999999      777


Q ss_pred             HHHHHHHHHH
Q 015340          333 SVSMLSIAYG  342 (408)
Q Consensus       333 ~~~ll~~~y~  342 (408)
                      +..++.+.+.
T Consensus       301 ~~~~l~l~~l  310 (375)
T PLN00012        301 CVGSIDITQL  310 (375)
T ss_pred             HHHHHHHHHH
Confidence            7655555543

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=8.7e-33  Score=273.66  Aligned_cols=227  Identities=21%  Similarity=0.275  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~R  179 (408)
                      .++++++|++++||+++.+++++++.|.+.+. .. +.... .+..++..+++..++++++|++||++|+|+|++|||+|
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R  100 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-AF-GWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR  100 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence            34578899999999999999999887877653 21 22221 11113445677888999999999999999999999999


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHH
Q 015340          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (408)
Q Consensus       180 PlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg  259 (408)
                      |+++|++|+++++.+..++.++++++++.+|++.+.++ +++++++++||  .||+++||+++++++.+++.+|..+.++
T Consensus       101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYS--APPLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhc--CCccccccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988886554444 46677789999  4889999999999999887665433222


Q ss_pred             HHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHH
Q 015340          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSI  339 (408)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~  339 (408)
                      .+    ..+.+..   .+...++.....+++..+++++||++|+|+|+++|+||+|+++|++++      .+++..++.+
T Consensus       178 g~----~~~~~~~---~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a------~~l~~~l~~~  244 (314)
T PRK07566        178 GA----AAFGAGL---PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNA------ARIACVVIDL  244 (314)
T ss_pred             HH----HHhccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHH------HHHHHHHHHH
Confidence            11    1122221   345555555667778888999999999999999999999999999999      7887777777


Q ss_pred             HHHHHH
Q 015340          340 AYGAAV  345 (408)
Q Consensus       340 ~y~~~i  345 (408)
                      +|.+.+
T Consensus       245 ~~~~~~  250 (314)
T PRK07566        245 FQLAVI  250 (314)
T ss_pred             HHHHHH
Confidence            776543

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=4.1e-33  Score=272.29  Aligned_cols=222  Identities=20%  Similarity=0.211  Sum_probs=174.4

Q ss_pred             HHHHHHHccchhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccccc
Q 015340          106 HALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG  184 (408)
Q Consensus       106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG  184 (408)
                      |+|++++||+++..++++++.|.+++.....+ +++.  ..++.++++..+.++++|.+|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46889999999999999999999887322122 2221  12444677888999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHHH
Q 015340          185 EISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI  264 (408)
Q Consensus       185 ~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~  264 (408)
                      ++|+++++.+..++..+++.+++.++.+......+++++.+++||  .||+|+||+++++++.+++.++.....+.+   
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~---  153 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGH---  153 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheec--CchhhhccCCCccHHHHHHHHHHHHHHHHH---
Confidence            999999999999999999999888876653334456677789999  589999999999998887655433222211   


Q ss_pred             HHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHHHHH
Q 015340          265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAA  344 (408)
Q Consensus       265 ~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~~  344 (408)
                        ...+.    .++..++.....++++.+++++||++|+|+|+++|+||+|+++|+|++      .+++..++.++|...
T Consensus       154 --~~~~~----~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a------~~l~~~l~~~~~~~~  221 (283)
T TIGR01476       154 --AIFAP----LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRA------AIVAVTTINVFQAMV  221 (283)
T ss_pred             --HHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHH------HHHHHHHHHHHHHHH
Confidence              12232    345555555667778888999999999999999999999999999999      888887777777655


Q ss_pred             HH
Q 015340          345 VV  346 (408)
Q Consensus       345 i~  346 (408)
                      +.
T Consensus       222 ~~  223 (283)
T TIGR01476       222 IG  223 (283)
T ss_pred             HH
Confidence            43

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=6.8e-32  Score=265.35  Aligned_cols=268  Identities=13%  Similarity=0.062  Sum_probs=187.9

Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCC
Q 015340          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (408)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~R  179 (408)
                      ++++++|++++||+++..+.++.++|.++|.+..  .++.   ..++++++..++++++|++||++|+|.|++|+  |+|
T Consensus         7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~--~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~R   81 (296)
T PRK04375          7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPGV--PPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNR   81 (296)
T ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCC
Confidence            3569999999999999999999999999986432  2232   24567889999999999999999999999987  699


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHH
Q 015340          180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (408)
Q Consensus       180 PlasG~is~~~a~~~~~~l~~l~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~l  258 (408)
                      |+|+|++|++++..++.++.++++.+++. .|..+..+..+......+.||.     ++||+++......++..+..+..
T Consensus        82 pl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~  156 (296)
T PRK04375         82 PLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTPQNIVIGGAAGAMPPLI  156 (296)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCccchHHHHHHHHhHHHH
Confidence            99999999999999999999999888755 5655554443333334678985     58999965444443333333333


Q ss_pred             HHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHH
Q 015340          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS  338 (408)
Q Consensus       259 g~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~  338 (408)
                      |++.     +.|.    .+...+++.+..++|+.+.+..++++|+|||+++|+||+|+++|++++      .+++.....
T Consensus       157 g~~a-----~~g~----~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~------~~~~~~~~~  221 (296)
T PRK04375        157 GWAA-----VTGS----LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVT------KRQILLYTV  221 (296)
T ss_pred             HHHH-----hCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHH------HHHHHHHHH
Confidence            4332     2343    355566777788999999999999999999999999999999999988      554443322


Q ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH-HHHHHHHHHH
Q 015340          339 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYMFIWKL  396 (408)
Q Consensus       339 ~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~-~~f~~~iw~l  396 (408)
                      +.-...++.......++  .++..+....+..+.++.+.++.+|++.| +.|+...|.+
T Consensus       222 ~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~  278 (296)
T PRK04375        222 LLVAVSLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL  278 (296)
T ss_pred             HHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence            22222222111112333  22222344556666677778877777766 4555555554

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=2e-31  Score=259.97  Aligned_cols=267  Identities=14%  Similarity=0.130  Sum_probs=187.7

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCCcc
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL  181 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~RPl  181 (408)
                      ++++|+|++||++.....++.+.|.++|.+..  .++.   .+++.+++.+++++++|++||++|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            46899999999998888899899998885432  2232   24567788899999999999999999999987  58999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHH
Q 015340          182 ASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV  260 (408)
Q Consensus       182 asG~is~~~a~~~~~~l~~l~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~  260 (408)
                      |+|++|++++..++.++.++++.+++. +|+.+.....+..++..+.||.     ++||+++.+.+..++..+ .+.++.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~-~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGGFAGN-AAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHHHHHH-HHHHHH
Confidence            999999999999999999999988877 7755433333455567788995     489999876665554433 333333


Q ss_pred             HHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHH
Q 015340          261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIA  340 (408)
Q Consensus       261 ~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~  340 (408)
                      +.    ...|.    .+...+++.+..++|+.+.....+++|+|||+++|+||+|+++|+|++      .++......+.
T Consensus       150 ~~----a~~g~----~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a------~~~~~~~~~~~  215 (279)
T PRK12869        150 YA----SGTGS----LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTS------VRAISISNALM  215 (279)
T ss_pred             HH----HHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHH------HHHHHHHHHHH
Confidence            32    22343    355666666778889988877778899999999999999999999988      55544433333


Q ss_pred             HHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHHccCCCHHHH-HHHHHHHHHHHHH
Q 015340          341 YGAAVVVGASSPFLANKLITIIGHG-ILASIFWLRVRAVDLSDNASI-LSFYMFIWKLYYA  399 (408)
Q Consensus       341 y~~~i~~g~~~~~~~~~~~~~~~~~-i~a~~l~~~~~~vd~~~~~~~-~~f~~~iw~l~~~  399 (408)
                      .......+. ...++   .|..+.. ..+..+..+.+..+.+|++.| +.|..++|++...
T Consensus       216 ~~~~~~~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~~~  272 (279)
T PRK12869        216 IPYILLLYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLALF  272 (279)
T ss_pred             HHHHHHHHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Confidence            222222222 23344   2333333 334455565566665566555 5566778887543

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=2.4e-31  Score=262.56  Aligned_cols=228  Identities=21%  Similarity=0.301  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCC
Q 015340          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY  178 (408)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~-~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~  178 (408)
                      ...+++++|++++||++|..++++++.|...+ +.+ ++... ....++..+++..++++++|.+|||+|+|.|+.|+|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~   88 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY   88 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence            34566889999999999999999998888764 222 12111 0111344557778999999999999999999999999


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhh
Q 015340          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (408)
Q Consensus       179 RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~  252 (408)
                      ||+++|++|+++++.++.++..+++.+++.+..      +..+...+++++++++||  .||+++||+++++++.++..+
T Consensus        89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~  166 (306)
T TIGR02056        89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYS--APPLKLKQNGWLGNFALGASY  166 (306)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHc--CChhhhhhcccHHHHHHHHHH
Confidence            999999999999999998888888877765531      222333356677799999  489999999988988877655


Q ss_pred             hhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHH
Q 015340          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRL  332 (408)
Q Consensus       253 g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i  332 (408)
                      +..+..+.+     .++|.    ++...++..+..++|+.++++.||++|+|+|++.|+||+|+++|+|++      .++
T Consensus       167 ~~~~~~~~~-----a~~g~----~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a------~~~  231 (306)
T TIGR02056       167 IALPWWAGH-----ALFGE----LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETA------AWI  231 (306)
T ss_pred             HHHHHHHHH-----HHhCC----CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHH------HHH
Confidence            533322211     23343    355555666677789999999999999999999999999999999999      788


Q ss_pred             HHHHHHHHHHHHHH
Q 015340          333 SVSMLSIAYGAAVV  346 (408)
Q Consensus       333 ~~~ll~~~y~~~i~  346 (408)
                      +..++..+|...+.
T Consensus       232 ~~~l~~~~~~~~~~  245 (306)
T TIGR02056       232 CVGAIDIFQGLIAA  245 (306)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777776764443

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=1.4e-30  Score=254.19  Aligned_cols=267  Identities=17%  Similarity=0.123  Sum_probs=188.4

Q ss_pred             HHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CCCcccc
Q 015340          106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLAS  183 (408)
Q Consensus       106 ~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~RPlas  183 (408)
                      |+|+|++||+++..+.++++.|.++|.... +.++.   .+++++++.+++++++|++||++|+|.|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            468999999999999999999999985432 22332   24567889999999999999999999999976  6999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHH-HHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHH
Q 015340          184 GEISMGTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIF-VGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (408)
Q Consensus       184 G~is~~~a~~~~~~l~~l~l~l-a~~l~~~~~~~~l~~~~~-l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~  261 (408)
                      |++|++++..++.++.++|+.+ ...+|+....++. ++.+ ..++||.     .+||+++.+++..++. |....++.+
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~-g~~~~l~g~  149 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-FGIFFYVIVYTI-----WLKRRTPQNTVIGGFA-GAVPPLIGW  149 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhcCh-----hhccCCchhHHHHHHH-HHHHHHHHH
Confidence            9999999999999999998884 4457755554443 3443 4788994     3799988877766544 333333322


Q ss_pred             HHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY  341 (408)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y  341 (408)
                      .    ...|.    .+...+++.....+|+...+...+++|+|||+++|+||+|+++|+|++      .++......+..
T Consensus       150 ~----a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a------~~~~~~~~~~~~  215 (280)
T TIGR01473       150 A----AVTGS----ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERIT------KRQIALYTAALL  215 (280)
T ss_pred             H----HhcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHH------HHHHHHHHHHHH
Confidence            2    12343    355566666778889988877888999999999999999999999988      555443332222


Q ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCC-CHH-HHHHHHHHHHHHHHH
Q 015340          342 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLS-DNA-SILSFYMFIWKLYYA  399 (408)
Q Consensus       342 ~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~-~~~-~~~~f~~~iw~l~~~  399 (408)
                      ....+.+.....++  .++..+..+.+..+.++.+..|.+ |++ ..+.|+...+.+...
T Consensus       216 ~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~  273 (280)
T TIGR01473       216 PVSLLLAFLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALL  273 (280)
T ss_pred             HHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            22222233333444  233345556677777888777766 555 446666667776543

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=1.2e-30  Score=254.07  Aligned_cols=198  Identities=25%  Similarity=0.337  Sum_probs=157.2

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccc
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlas  183 (408)
                      ++++|++++||+++..+.++.+.|.+++.+..++  +.   ..+..+++.++.++++|++||++|+|+|++|||+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3678999999999999999988899887543332  11   134566788888999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHH
Q 015340          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (408)
Q Consensus       184 G~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~  263 (408)
                      |++|++++..+..++.++|+.+++.+|++.+.+. +.+.++++.|+.     ++||.+.++++.++...|..+..|+.. 
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-  149 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-  149 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-
Confidence            9999999999999999999999988886666554 455667899996     578988889999888777554444321 


Q ss_pred             HHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccc
Q 015340          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERL  323 (408)
Q Consensus       264 ~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a  323 (408)
                          + +.    .+...++ ....++++.++++.||++|+|+|+++|+||+|+++|+|++
T Consensus       150 ----~-~~----~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a  199 (277)
T PRK12883        150 ----V-GR----IGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRA  199 (277)
T ss_pred             ----h-cc----ccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHH
Confidence                1 32    2333222 2335556678889999999999999999999999999998

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.98  E-value=3.2e-30  Score=253.42  Aligned_cols=267  Identities=14%  Similarity=0.159  Sum_probs=191.7

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC-----CC
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----PY  178 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk-----~~  178 (408)
                      +++.|++++||+++..+..+.+.|.++|.....++++.   ..++++++..++++++|.+|||+|.+.|+.|+     |+
T Consensus         3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~   79 (296)
T PRK05951          3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ   79 (296)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence            68899999999999999999999998886543455543   35677889999999999999999965554444     78


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340          179 LPLASGEISMGTGIAITLASALMSLAYAV----MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (408)
Q Consensus       179 RPlasG~is~~~a~~~~~~l~~l~l~la~----~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~  254 (408)
                      ||+++|++|+++++....++..+++.++.    ..+ +..+...+++++.++.||  .||+++|+++ +|++..++.+|.
T Consensus        80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~-~~~l~l~~~~~~~~~~Yt--~~P~~lky~g-lGe~~v~~~~g~  155 (296)
T PRK05951         80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRG-IGAVTLALLGVFLWTCYM--GPPFFLKYRW-LGEHLVFYAWSH  155 (296)
T ss_pred             CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHc--CCCcccCCCC-chHHHHHHHHHH
Confidence            99999999999999988887766654433    235 333333457788899999  5899999775 588888887886


Q ss_pred             HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHH
Q 015340          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV  334 (408)
Q Consensus       255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~  334 (408)
                      .+.+|.+..     .+..   ++...+.......+++.....+||++|+|+|++.|+||+|+++|+|++       ++..
T Consensus       156 ~~vlg~~~~-----~~~~---~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-------~~~~  220 (296)
T PRK05951        156 MLVMGLIYV-----WLGN---LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-------ALYI  220 (296)
T ss_pred             HHHHHHHHH-----HhCc---ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-------HHHH
Confidence            666666542     2221   344555555566777788899999999999999999999999999998       5554


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340          335 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  392 (408)
Q Consensus       335 ~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~  392 (408)
                      .....+|...+........++..+.+.++.......+.++.+..|.++...+.+.+..
T Consensus       221 ~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        221 FALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence            5566677655443332212222233444554455555666666676666666666655

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.98  E-value=5.3e-30  Score=248.73  Aligned_cols=266  Identities=18%  Similarity=0.197  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCc
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP  180 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RP  180 (408)
                      ....++.+++++||..|+.+..++.+|.+.+.+. .|..+..   +++.+......+.+.|.+||++|+|+|++|+|+||
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            3456778899999999999999999999777542 2321222   33444555667789999999999999999999999


Q ss_pred             ccccccChHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340          181 LASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (408)
Q Consensus       181 lasG~is~~~a~~~~~~l~~l----~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~  256 (408)
                      +++|++|++++..+..++...    ++.+++.+|++.+.+. +++.++.++||  .||+|+|++|++++++.. ..|...
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~-~v~~~l~~~YS--~pPlRlK~rp~l~~l~~~-~~g~p~  159 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLL-LLYAALFVGYS--LPPLRFKARPFLDGLSNA-AYALPL  159 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHc--cCccchhcCcchhHHHHH-HHHHHH
Confidence            999999999998865444433    5566777776555443 56778899999  599999999999988863 334322


Q ss_pred             HHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHH
Q 015340          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSM  336 (408)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~l  336 (408)
                      ..+      ..+.|..    ..+.  ......+|..+++++++++|+|||++.|+||+|+++|+|++      .+++..+
T Consensus       160 ~~~------~~~~g~~----~~~~--~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a------~~~a~~~  221 (292)
T PRK13595        160 ALP------ALALGAP----VPWP--PLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGT------ALYALAW  221 (292)
T ss_pred             HHH------HHHcCCc----chHH--HHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhH------HHHHHHH
Confidence            211      1234432    2222  23456788899999999999999999999999999999999      8888765


Q ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHh
Q 015340          337 LSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYL  402 (408)
Q Consensus       337 l~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~iw~l~~~ey~  402 (408)
                      .+++-.++...   ....+.  ...+...+.+.-++     .|.+..+.-+.|-.|||--+...++
T Consensus       222 ~~~a~~~~~~~---~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~  277 (292)
T PRK13595        222 FLLAGALLWPV---SRLTAL--ALWLICGGMALALW-----RRPTPETAHRLYPLSIVTPWIVGTV  277 (292)
T ss_pred             HHHHHHHHHHh---cchHHH--HHHHHHHHHHHHHh-----cCCCHHHHhccchHHHHHhHHHHHH
Confidence            54443322221   111221  11222233332222     5766666777777888876665543

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=1.9e-29  Score=248.57  Aligned_cols=204  Identities=16%  Similarity=0.218  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC--CC
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY  178 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk--~~  178 (408)
                      .+.++++|++++||+++..+.++.+.|.+++.+.  +.++.   ..++++++.+++++++|++||++|+|+|++++  ++
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            4456889999999999999999999999888433  23332   14456778899999999999999999999764  48


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHH
Q 015340          179 LPLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (408)
Q Consensus       179 RPlasG~is~~~a~~~~~~l~~l~l~la~-~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~  257 (408)
                      ||+|||++|++++..++.++.++|+.++. ..|.....+..+..+...+.||.     ++||+++.+++..++..+..+.
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l  158 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV  158 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence            99999999999999999999999988654 45755444443334445678984     4899999999988776665555


Q ss_pred             HHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccc
Q 015340          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERL  323 (408)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a  323 (408)
                      .|+..     +.|.    .+...+++....++|+.+.+...+++|.|||+++|+||+|+++|++++
T Consensus       159 ~G~~a-----~~g~----~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t  215 (306)
T PRK13362        159 VGYCA-----VTGQ----FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKT  215 (306)
T ss_pred             HHHHH-----HcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHH
Confidence            55543     3343    356667778889999999999999999999999999999999999988

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=4.1e-29  Score=245.16  Aligned_cols=230  Identities=17%  Similarity=0.188  Sum_probs=176.3

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccc--ccccc--CCCCC
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKV--NKPYL  179 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~--e~Dr~--nk~~R  179 (408)
                      .+++|++++||+++..+.++++.|.++|... .++++.   ..++++++..++++++|.+|||+|+  +.|+.  ++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3678999999999999999999999888532 234432   2566788999999999999999999  46754  67899


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhH
Q 015340          180 PLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (408)
Q Consensus       180 PlasG~is~~~a~~~~~~l~~l~l~la~~----l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~  255 (408)
                      |+++|++|++++..++.++.++++.++..    .++ ...+..+++++++++||  .||.++|+++ ++++..++.+|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Ys--~~p~~~~~~g-lge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW-WLLLLGLLCIAAAILYT--GGPKPYGYTG-LGELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhc--CCCCccCCCC-cHHHHHHHHHHHH
Confidence            99999999999998887777766555543    353 33333356677889999  4888888876 4888888777765


Q ss_pred             HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS  335 (408)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~  335 (408)
                      ...+.+..    ..|.    .+.+.++..+..++|+.+++++||++|+|+|+++|+||+|+++|+|++      .+++..
T Consensus       154 ~~~~~~~~----~~~~----~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a------~~~~~~  219 (293)
T PRK06080        154 IVLGTYYL----QAGT----VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNA------RRLHAA  219 (293)
T ss_pred             HHHHHHHH----hcCC----CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhH------HHHHHH
Confidence            55544321    1122    355666667778889999999999999999999999999999999999      899999


Q ss_pred             HHHHHHHHHHHHHHhcCcch
Q 015340          336 MLSIAYGAAVVVGASSPFLA  355 (408)
Q Consensus       336 ll~~~y~~~i~~g~~~~~~~  355 (408)
                      +..++|...+........++
T Consensus       220 l~~~~~~~~~~~~~~~~~~~  239 (293)
T PRK06080        220 LLALAYLCIVLLALLGLASP  239 (293)
T ss_pred             HHHHHHHHHHHHHHHhhhhH
Confidence            99999987666544433333

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.97  E-value=5.8e-31  Score=246.61  Aligned_cols=270  Identities=17%  Similarity=0.129  Sum_probs=205.1

Q ss_pred             hhHHHHHHHHHHHHHHHHccchhHHHHHHHH---HHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 015340           95 NSFLNVFLKKFHALYRFMRAYACAGVIIATT---SNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV  171 (408)
Q Consensus        95 ~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~---~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~  171 (408)
                      ++..+..+.++++|.|++|.+.++++.+.+.   ...++|...  ...+.+ .-+.+.-++.++|++++|++||+.|+|+
T Consensus        54 ss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdl  130 (353)
T KOG1381|consen   54 SSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPSI-KMLALFGVGALLMRGAGCTINDLWDKDL  130 (353)
T ss_pred             hhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccchh-HHHHHhcccHHHhccCCceehhhhhhhh
Confidence            3445556667999999999999999998774   455555421  111221 1122344678899999999999999999


Q ss_pred             cccCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHH
Q 015340          172 DKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMV  249 (408)
Q Consensus       172 Dr~nk~--~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~  249 (408)
                      |+..+|  .||++||++|+++|+.+..+.+.+|+.+...+|+....+. ..++.+.+.|+.      +||.++++++.++
T Consensus       131 D~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl------~kr~TY~pq~vLg  203 (353)
T KOG1381|consen  131 DAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL------MKRFTYWPQLVLG  203 (353)
T ss_pred             hhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh------hhhcchhHHHHHh
Confidence            998665  8999999999999999999999999999999996665443 567777788996      7999999999886


Q ss_pred             HhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhH
Q 015340          250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKV  329 (408)
Q Consensus       250 ~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l  329 (408)
                      .    .+++|... ++.++-|..   .+...+.+++-..+|++.+|++|++||.++|.+.|+|+.+.++|+++.      
T Consensus       204 l----tfnwGAll-Gw~A~~g~~---~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK------  269 (353)
T KOG1381|consen  204 L----TFNWGALL-GWCALKGSL---SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTK------  269 (353)
T ss_pred             h----hcchhhhh-cchhhcCcc---ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCc------
Confidence            4    33344332 233344543   222334567778899999999999999999999999999999999999      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Q 015340          330 FRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  392 (408)
Q Consensus       330 ~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~~  392 (408)
                      .|++.. -......+..+|+.+...|.  +| .+....+..+..|..++|++|+++|..+|..
T Consensus       270 ~wl~gf-~a~~ia~La~aG~~s~q~~p--yy-~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~s  328 (353)
T KOG1381|consen  270 PWLSGF-GAAQIASLAAAGIASDQTWP--YY-AALGAVAARLGSQIYKVDIDNPSDCWKKFKS  328 (353)
T ss_pred             hHHhhh-hHHHHHHHHHhhhccCCCch--HH-HHHHHHHHHHHhheeeeecCChHHHHHHHHh
Confidence            777552 22223355567888888772  33 4577889999999999999999999888864

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=1.5e-27  Score=234.27  Aligned_cols=260  Identities=13%  Similarity=0.114  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC-------
Q 015340          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN-------  175 (408)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~n-------  175 (408)
                      +++++|++++||+.......+++.|.++|......+++..   +++.+++..++.+++|++||+.|+|.|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4688999999999887777777778877731111233321   232344455556778999999999999864       


Q ss_pred             --C--CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhhccCCcCccccccccc--hhHH
Q 015340          176 --K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGNSF--LAAF  246 (408)
Q Consensus       176 --k--~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~---~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~--l~~l  246 (408)
                        |  ++||+++|++|+++++.+..++.++|+.++..++..   ..+...+.+.++++.|+.      .||...  ...+
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p~~~l  153 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYPVAQL  153 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccccccHHHH
Confidence              3  489999999999999999999999998887765532   122222344566777884      234311  1222


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCc
Q 015340          247 CMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFP  326 (408)
Q Consensus       247 ~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~  326 (408)
                      ..++..+.++..+ +.     ..|.    .+...++...+.++|+.+++++||++|+|||++.|+||+|+++|++++   
T Consensus       154 ~G~~~~~~~~~~g-~~-----~~g~----~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t---  220 (297)
T PRK12871        154 LGRTDFTLFPAAG-YL-----CYGQ----PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGT---  220 (297)
T ss_pred             HHHHHHHHHHHHH-HH-----HhCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHH---
Confidence            2222223222222 21     2343    355556666778899999999999999999999999999999999988   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Q 015340          327 QKVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM  391 (408)
Q Consensus       327 ~~l~~i~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~~~~~~f~~  391 (408)
                         .++...+..+.....  ++.....++  ..+....++.+..+.+|.+..+.+|++.|-+-|.
T Consensus       221 ---~~~i~~~~~l~~l~~--~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  278 (297)
T PRK12871        221 ---MYWVTGFTALHFLAA--IFFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILP  278 (297)
T ss_pred             ---HHHHHHHHHHHHHHH--HHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence               544443333333222  232333333  1222334566778889999999999999966554

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=1.7e-27  Score=235.97  Aligned_cols=223  Identities=13%  Similarity=0.055  Sum_probs=172.6

Q ss_pred             HHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC----CCCc
Q 015340          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYLP  180 (408)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk----~~RP  180 (408)
                      ++.|++++||++...++++++.|..+|.....++++.   ..+++++++++++.++|.+|||+|.+.|..++    +.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            6789999999999999999999998886433455543   25677888899999999999999988665554    6899


Q ss_pred             ccccccChHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340          181 LASGEISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (408)
Q Consensus       181 lasG~is~~~a~~~~~~l~~l~l~----la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~  256 (408)
                      +++|.+|+++++..+..+.+++..    +.+..| |..+...+++++.+++||  .||+++||++ +|++..++.+|..+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g-~~~l~igl~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTS-WLLLVIGLICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999988777777666    555566 445544567888899999  5899999999 68888888888666


Q ss_pred             HHHHHHHHHHHHhcCCcccCcHHHH--------------------HHHHHHHHHHHHHHHHhhccChhhhHhcCCcccce
Q 015340          257 QFPVYVHIQKYVLGRPLEIFTRPLM--------------------FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSV  316 (408)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~i--------------------~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv  316 (408)
                      ..+.+....    +.    ++...+                    +..+...+.+...+.+||++|+|+|+++|+||+|+
T Consensus       156 v~g~~yv~t----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v  227 (317)
T PRK13387        156 FLLAVYINT----NT----ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY  227 (317)
T ss_pred             HHHHHHHhc----CC----CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee
Confidence            555543211    11    111111                    13344556667789999999999999999999999


Q ss_pred             eeccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 015340          317 MLGKERLFFPQKVFRLSVSMLSIAYGAAVVVG  348 (408)
Q Consensus       317 ~lG~k~a~~~~~l~~i~~~ll~~~y~~~i~~g  348 (408)
                      ++|+|++      .+++..+..++|...+...
T Consensus       228 ~lG~~~a------~~l~~~l~~~a~l~~~~~v  253 (317)
T PRK13387        228 YIGREKG------VVLFAILFYASYLAIAVIV  253 (317)
T ss_pred             eEcHHhH------HHHHHHHHHHHHHHHHHHH
Confidence            9999999      8999999999998665543

>PRK08238 hypothetical protein; Validated

Probab=99.95  E-value=8.7e-27  Score=242.09  Aligned_cols=221  Identities=18%  Similarity=0.240  Sum_probs=171.7

Q ss_pred             ccc-cCCceEecCCccccccccCCCCCCcccchhHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHH
Q 015340           64 SSR-NCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAY  142 (408)
Q Consensus        64 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~  142 (408)
                      .|+ ++++++||++++.++.+++.+     .+...+++.+.++++|++++|||||.+|++.++ +.+++ +.+.+  +..
T Consensus       154 ~~~~A~~av~Vn~~~~l~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~--~~~  224 (479)
T PRK08238        154 VWAAARRAIVVGASPGVARAARALG-----PVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGD--LQA  224 (479)
T ss_pred             HHHhCCCeEEECCCHHHHHHHHHcC-----CcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCC--hHH
Confidence            799 999999999998777776444     566778888889999999999999999999866 44444 44433  222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccccC--CCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 015340          143 FTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA  220 (408)
Q Consensus       143 l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~n--k~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~  220 (408)
                      +...++++++++++++++|++||++|+|+||+|  ||+||+|||++|+++|+.++.+++++|+++++.+|+ .....+++
T Consensus       225 ~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~-~~~~~~~~  303 (479)
T PRK08238        225 LLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP-AFLLVLLA  303 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence            334677888999999999999999999999997  679999999999999999999999999999999885 44455568


Q ss_pred             HHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhc
Q 015340          221 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDL  300 (408)
Q Consensus       221 ~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di  300 (408)
                      +++++++||+     ++||.++++++++++.++.-+..|+.      ..+     .+...|++. +..++.....+.|..
T Consensus       304 ~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~------a~~-----~~~s~wll~-~~~~~~l~la~~KR~  366 (479)
T PRK08238        304 YLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAA------AIG-----VALSFWLLA-FSMFFFLSLALVKRY  366 (479)
T ss_pred             HHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHH------Hhc-----cCHHHHHHH-HHHHHHHHHHHHHhH
Confidence            8888999996     58999999999998765543333332      122     233334332 233334556788999


Q ss_pred             cChhhhHhcCC
Q 015340          301 HDVDGDKKFGI  311 (408)
Q Consensus       301 ~DiegD~k~Gi  311 (408)
                      .|.++++..|.
T Consensus       367 ~El~~~~~~~~  377 (479)
T PRK08238        367 TELRRALQRGK  377 (479)
T ss_pred             HHHHHHHhcCC
Confidence            99999988886

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=4.5e-26  Score=221.75  Aligned_cols=218  Identities=20%  Similarity=0.177  Sum_probs=154.3

Q ss_pred             HHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHH-HHHHHHHHHHhhhcccccccccCCCCCcccc
Q 015340          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVP-AVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (408)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va-~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlas  183 (408)
                      +|.+++++||.+|+.+.+++..|.++|. +.++  +.    +++..++ ....+.+.|.+|||+|.|.|+.|+|.+.. .
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~-~~~~--~~----~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~   72 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAG-GEID--WL----FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E   72 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHC-CCCC--hH----HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence            3678999999999999999998999983 3322  22    2233333 23333444677999999999999775443 4


Q ss_pred             cccChHHHHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHH
Q 015340          184 GEISMGTGIAITLASAL-----MSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (408)
Q Consensus       184 G~is~~~a~~~~~~l~~-----l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~l  258 (408)
                      |.+++++..........     .++.+....+ +.++....++++.++.||  .||.|+|++++.|+++.+..+......
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~l~~~ai~~~~~YS--~~p~rlk~~gl~d~~t~~~~f~~~~v~  149 (282)
T PRK13105         73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGS-WASGLVLAVSVFAVVAYS--APGLRFKERPFLDSLTSSTHFVSPALY  149 (282)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhc--CCCccccccchHHHHHHHHHHHHHHHH
Confidence            88999987443333322     2223333334 444444467788899999  489999999999987655433212223


Q ss_pred             HHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHH
Q 015340          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLS  338 (408)
Q Consensus       259 g~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~  338 (408)
                      |.+     .+ |+.   .+...++....+.+|+.+++++||+||+|+|++.|+||+|+++|+|++      .+++..++.
T Consensus       150 G~~-----~~-~~~---~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a------~~~~~~l~~  214 (282)
T PRK13105        150 GLV-----LA-GAP---FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRT------VRLAVGLYA  214 (282)
T ss_pred             HHH-----Hh-hcc---ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHH------HHHHHHHHH
Confidence            322     22 332   345556666778889999999999999999999999999999999999      899999999


Q ss_pred             HHHHHHHHHH
Q 015340          339 IAYGAAVVVG  348 (408)
Q Consensus       339 ~~y~~~i~~g  348 (408)
                      +++.+.+..+
T Consensus       215 ~a~~~~~~~~  224 (282)
T PRK13105        215 AAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHH
Confidence            8888776444

>PLN02922 prenyltransferase

Probab=99.95  E-value=2.1e-25  Score=220.63  Aligned_cols=233  Identities=18%  Similarity=0.210  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCCCc
Q 015340          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYLP  180 (408)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e--~Dr~nk~~RP  180 (408)
                      ++++.|++++||++...++.|++.|.++|.....++++.   ..+++++++++.+.++|.+|||+|.+  .|+.++..+.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            467889999999999999999999999986544456653   35678899999999999999999986  5764322212


Q ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340          181 LASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (408)
Q Consensus       181 lasG~is~~~a~~~~~~l~~l~l~la~~l----~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~  256 (408)
                      -..|  |+++....+..++++++...+.+    +.|.+++..+++++.+++||  .||+++|++++ |++..++.+|.++
T Consensus        90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~  164 (315)
T PLN02922         90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLA  164 (315)
T ss_pred             Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHH
Confidence            2234  89998887777666655322221    22555555568888999999  58999999986 7777788888777


Q ss_pred             HHHHHHHHHHHHhcCC-cc--cCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHH
Q 015340          257 QFPVYVHIQKYVLGRP-LE--IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLS  333 (408)
Q Consensus       257 ~lg~~~~~~~~v~g~~-~~--~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~  333 (408)
                      ..+.|.... ...+.. ..  .++...++..+.+.+++.+++.+||++|+|+|+++|+||+|+++|+|++      .+++
T Consensus       165 v~g~y~~~~-~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a------~~l~  237 (315)
T PLN02922        165 TTAFYLALA-SGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKG------SRVV  237 (315)
T ss_pred             HHHHHHHhc-ccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHH------HHHH
Confidence            666655311 000110 00  1244455566678888889999999999999999999999999999999      8899


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 015340          334 VSMLSIAYGAAVVVGAS  350 (408)
Q Consensus       334 ~~ll~~~y~~~i~~g~~  350 (408)
                      ..+...+|...+.....
T Consensus       238 ~~l~~~~y~~~i~~v~~  254 (315)
T PLN02922        238 RWAVLLLYSLLAALGLL  254 (315)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88889999877655444

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.95  E-value=4.7e-25  Score=216.98  Aligned_cols=227  Identities=15%  Similarity=0.101  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--ccccCCCC
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPY  178 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e--~Dr~nk~~  178 (408)
                      .+++++.|++.+||+++..++.+++.|.++|.....++++.   ..++++++..+++.++|.+|||+|.+  .|+. ++.
T Consensus         8 ~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~   83 (304)
T PRK07419          8 SPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH   83 (304)
T ss_pred             CccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc
Confidence            34568889999999999999999999999986543456653   35678889999999999999999987  6774 222


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh
Q 015340          179 LPLASGEISMGTGIAITLASALMSLAY----AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (408)
Q Consensus       179 RPlasG~is~~~a~~~~~~l~~l~l~l----a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~  254 (408)
                       ...++..++++....+.+++.+++.+    .+..| |+++...+++++.+++||  .||+++|++++ |++..++.+|.
T Consensus        84 -~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~  158 (304)
T PRK07419         84 -SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGP  158 (304)
T ss_pred             -CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHH
Confidence             23345557888887776666655544    34445 555555567888899999  58999999985 88888888887


Q ss_pred             HHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHH
Q 015340          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSV  334 (408)
Q Consensus       255 ~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~  334 (408)
                      .+..+.+..     ...   .++...++..+...+.+..+..+||++|+|+|+++|+||+|+++|+|++      .+++.
T Consensus       159 l~v~g~~yv-----~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a------~~ly~  224 (304)
T PRK07419        159 LAVAAALYS-----QTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRG------AQLLP  224 (304)
T ss_pred             HHHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhH------HHHHH
Confidence            777666542     222   2455566666667778888999999999999999999999999999999      88988


Q ss_pred             HHHHHHHHHHHHHHHh
Q 015340          335 SMLSIAYGAAVVVGAS  350 (408)
Q Consensus       335 ~ll~~~y~~~i~~g~~  350 (408)
                      .+...+|...+.....
T Consensus       225 ~l~~~ay~~~i~~v~~  240 (304)
T PRK07419        225 WIVGLIYALELLPVLL  240 (304)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8889999877655443

>PLN02776 prenyltransferase

Probab=99.95  E-value=3e-25  Score=220.04  Aligned_cols=259  Identities=15%  Similarity=0.009  Sum_probs=180.8

Q ss_pred             HHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC--CCcccccccCh
Q 015340          111 FMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISM  188 (408)
Q Consensus       111 l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~--~RPlasG~is~  188 (408)
                      ++||.....+++..+.|.++|.+...+  +.   .+++..++..++++++|++||++|+|+|++|+|  +||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAID--LP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            467888888888888999998543333  21   255677899999999999999999999999774  99999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhh-HHHHHHHHHHHH
Q 015340          189 GTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL-LTQFPVYVHIQK  266 (408)
Q Consensus       189 ~~a~~~~~~l~~l~l~l-a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~-~~~lg~~~~~~~  266 (408)
                      ++++.+++++.++|+.+ ++.+|..+..++.+..++....||.      +||++.+. ..+|...|. .+.+||.     
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~-----  143 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWA-----  143 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHHH-----
Confidence            99999999999988854 5667866665554333444568984      79999875 466666663 4444443     


Q ss_pred             HHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeec--cccccCchhHHHHHHHHHHHHHHHH
Q 015340          267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG--KERLFFPQKVFRLSVSMLSIAYGAA  344 (408)
Q Consensus       267 ~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG--~k~a~~~~~l~~i~~~ll~~~y~~~  344 (408)
                      ++.|.    ++...+++...+++|+........+.|.|||+++|++++|+.-+  .+.+      ..+....+.+.-..+
T Consensus       144 Avtg~----~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta------~~i~~~~~~l~~~~l  213 (341)
T PLN02776        144 AASGQ----LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTA------LVALRNCLYLAPLGF  213 (341)
T ss_pred             HHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHH------HHHHHHHHHHHHHHH
Confidence            34454    46677788888999999877778889999999999999999763  4444      333332222222222


Q ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHH
Q 015340          345 VVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASILSFYMFIWKLYYA  399 (408)
Q Consensus       345 i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~vd~~~~-~~~~~f~~~iw~l~~~  399 (408)
                      +..+... .++  .++..+.++.+..+.+.++..+.+|+ ...+.|+.+++++...
T Consensus       214 l~~~~g~-~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~~l  266 (341)
T PLN02776        214 LAYDWGV-TSS--PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLPAF  266 (341)
T ss_pred             HHHHHHh-hhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence            2211111 122  24455566666677777777755554 4567788888887654

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=5e-26  Score=217.35  Aligned_cols=186  Identities=26%  Similarity=0.412  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--CCCCCcccccccChHHHHHHHHH
Q 015340          120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLA  197 (408)
Q Consensus       120 ~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~--nk~~RPlasG~is~~~a~~~~~~  197 (408)
                      .+.+++.|...+.+..  .++.   .....++++++++.++|.+||+.|+|+|+.  |||+||+++|+++.+++...+.+
T Consensus         4 ~~~~~l~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASGGP--FNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHcCC--CCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            4455555644443322  2222   244556666789999999999999999999  89999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccCc
Q 015340          198 SALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFT  277 (408)
Q Consensus       198 l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~  277 (408)
                      +.++++.+++..++..+.+. +++.+.+++||   ||+|+||++++++++.++.++....++++.      .++.   .+
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~  145 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD---PP  145 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc---cc
Confidence            99999999988885555444 56666779999   788999999999999988777555555443      2221   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccc
Q 015340          278 RPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERL  323 (408)
Q Consensus       278 ~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a  323 (408)
                      .+.++......++.......+|++|+|+|++.|+||+|+++|++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~  191 (257)
T PF01040_consen  146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKA  191 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHH
Confidence            3444444455667777788889999999999999999999999999

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.95  E-value=2e-25  Score=217.91  Aligned_cols=216  Identities=17%  Similarity=0.113  Sum_probs=167.1

Q ss_pred             ccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--ccc--CCCCCcccccccCh
Q 015340          113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV--DKV--NKPYLPLASGEISM  188 (408)
Q Consensus       113 Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~--Dr~--nk~~RPlasG~is~  188 (408)
                      ||+++..++.|++.|..+|.... .+++.   ..+++++++.+++.++|.+|||+|.+.  |+.  .+|.|++++|.+|+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999986543 56653   356778899999999999999999853  543  25789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH----HHhch-----HHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHH
Q 015340          189 GTGIAITLASALMSLAYA----VMIRS-----PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (408)
Q Consensus       189 ~~a~~~~~~l~~l~l~la----~~l~~-----~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg  259 (408)
                      +++...+.+++++++.++    +..++     +++....+++++.+++||  .||+++|++++ |++..++.+|.+...|
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHH
Confidence            999988877776555444    33442     144444457778889999  58999999885 8888888888777666


Q ss_pred             HHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHH
Q 015340          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSI  339 (408)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~  339 (408)
                      .+..     ..+.   ++...++..+...+++.+++.+||++|+|+|+++|+||+|+++|+|++      .++...+...
T Consensus       154 ~~yv-----q~~~---~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a------~~l~~~l~~~  219 (284)
T TIGR00751       154 TQYL-----QAHR---VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDART------RMYHQGLLAV  219 (284)
T ss_pred             HHHH-----hcCC---CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhH------HHHHHHHHHH
Confidence            5542     2222   455555545556777788999999999999999999999999999999      7888888888


Q ss_pred             HHHHHHHHHH
Q 015340          340 AYGAAVVVGA  349 (408)
Q Consensus       340 ~y~~~i~~g~  349 (408)
                      +|...++...
T Consensus       220 ay~~~~~~~~  229 (284)
T TIGR00751       220 AGVCTFVFML  229 (284)
T ss_pred             HHHHHHHHHH
Confidence            8876655443

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=1.5e-25  Score=218.99  Aligned_cols=222  Identities=20%  Similarity=0.201  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCccc
Q 015340          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA  182 (408)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPla  182 (408)
                      +-+++++++.|..+..........+...  ....+..+     ....+++.++.+.++|++||+.|+|+|+.|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMA--SLLLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHH--HHHHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            3568899999998766555444322111  00111111     2345667788899999999999999999999999999


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCcCcc-ccccccchhHHHHHHhhhhHHHHHH
Q 015340          183 SGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLL-RWKGNSFLAAFCMVSLNGLLTQFPV  260 (408)
Q Consensus       183 sG~is~~~a~~~~~~l~~l~l~la~-~l~~~~~~~~l~~~~~l~~~Ys~~lpp~-rlKr~~~l~~l~l~~~~g~~~~lg~  260 (408)
                      +++.....+..+..+...+++.+.. ..|++.+.. .+++.++++.||.  ||. ++||.|.+++++++..+|..+.++.
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALI-FIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            6655544444444444444444432 336444433 3566677999995  454 5899999999999998885554433


Q ss_pred             HHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHH
Q 015340          261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIA  340 (408)
Q Consensus       261 ~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~  340 (408)
                      +.     ..+.   .++...++.....+++.++.+.++|++|+|+|+++|+||+|+++|+|++      .+++..+..++
T Consensus       152 ~~-----~~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t------~~~~~~~~~~~  217 (285)
T PRK12872        152 VY-----YYQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT------LKFLLILNLLF  217 (285)
T ss_pred             HH-----hccc---ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHH------HHHHHHHHHHH
Confidence            22     1122   1344444445556667788899999999999999999999999999999      78888887777


Q ss_pred             HHHHHHHH
Q 015340          341 YGAAVVVG  348 (408)
Q Consensus       341 y~~~i~~g  348 (408)
                      +...+...
T Consensus       218 ~~~~~~~~  225 (285)
T PRK12872        218 LILLILGV  225 (285)
T ss_pred             HHHHHHHH
Confidence            77665443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=2.2e-24  Score=210.27  Aligned_cols=221  Identities=19%  Similarity=0.270  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~-~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~R  179 (408)
                      .++.++.++++.||++|..++.+.++|..+|.++.++ +++. +..++..+.  +..+.+.|++||++|+|+||.|+|++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-~~~ll~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-AVALFAYFL--FPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-HHHHHHHHH--HHHHHHHhcchhhhhhhccccCCCcc
Confidence            4567888999999999999999999999999764332 3331 111111111  22445667799999999999987754


Q ss_pred             c---cc-ccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhH
Q 015340          180 P---LA-SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (408)
Q Consensus       180 P---la-sG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~  255 (408)
                      .   ++ +|+.+...   ...+...+++.+.+..+. .....+++++++.++||  .||+|+|++++.+..+.++. . .
T Consensus        81 ~~r~~~~s~~~~~~~---~~~l~~~l~l~l~~~~~~-~~~~~ll~~i~~~~~YS--~pP~rlk~~p~~~~~~~g~~-~-~  152 (282)
T PRK12875         81 REREVRYRGDRRVLV---AVALSGALALAFLLVLPP-AAWPALLAFLVLSVEYS--APPLRFKTTPVLDSLSNGLY-I-L  152 (282)
T ss_pred             CCCCccHHHHHHHHH---HHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHc--CCCccchhccHHHHHHHHHH-H-H
Confidence            3   33 22221111   112222334444444442 22223356788899999  58999999999876554321 1 1


Q ss_pred             HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS  335 (408)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~  335 (408)
                      ..++.|.    ...|.    .+...  +....++|+.+++++||++|+|+|+++|+||+|+++|+|++      .+++..
T Consensus       153 ~~~~~y~----~~tg~----~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a------~~~~~~  216 (282)
T PRK12875        153 PGVAAYA----LVSGS----LPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRT------YAYCAA  216 (282)
T ss_pred             HHHHHHH----HHcCC----CcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhH------HHHHHH
Confidence            1122221    12232    23332  33445789999999999999999999999999999999999      777777


Q ss_pred             HHHHHHHHHHHHH
Q 015340          336 MLSIAYGAAVVVG  348 (408)
Q Consensus       336 ll~~~y~~~i~~g  348 (408)
                      ...++-...+.++
T Consensus       217 ~~~~a~~~~~~~~  229 (282)
T PRK12875        217 CWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666655555544

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.94  E-value=7.2e-24  Score=207.11  Aligned_cols=220  Identities=14%  Similarity=0.099  Sum_probs=166.3

Q ss_pred             HHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccCCCCCcccccc
Q 015340          108 LYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEV--DKVNKPYLPLASGE  185 (408)
Q Consensus       108 ~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~--Dr~nk~~RPlasG~  185 (408)
                      |++.+||+++..++.|++.|..+|.....++++.   ..++++++..+.+.++|.+|||+|.+.  |+.+. .+ ..++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~~-~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKL-HS-IVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-CC-ccccc
Confidence            6799999999999999999999986543456654   256678899999999999999999864  77422 11 22222


Q ss_pred             cChHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHHHHHH
Q 015340          186 ISMGTGIAITLASALMSLAY----AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (408)
Q Consensus       186 is~~~a~~~~~~l~~l~l~l----a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg~~  261 (408)
                      .++++......++..++..+    .+..+ |+++...+++++.++.||  .||+++|++++ |+++.++.+|.++..+.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence            35677776666665555443    34445 555555567888899999  58999999986 888888888877766655


Q ss_pred             HHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHHH
Q 015340          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAY  341 (408)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y  341 (408)
                      ..     ...   .+++..++..+..++.+.++..+||++|+|+|+++|+||+|+++|+|++      .++...+...+|
T Consensus       153 yv-----qt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a------~~l~~~l~~~~y  218 (285)
T TIGR02235       153 YA-----QSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLA------AKIVPWVISLSY  218 (285)
T ss_pred             HH-----hCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhH------HHHHHHHHHHHH
Confidence            42     222   2466666666667788888999999999999999999999999999999      899999999999


Q ss_pred             HHHHHHHHh
Q 015340          342 GAAVVVGAS  350 (408)
Q Consensus       342 ~~~i~~g~~  350 (408)
                      ...+.....
T Consensus       219 ~~~i~~v~~  227 (285)
T TIGR02235       219 VVLLIAVIG  227 (285)
T ss_pred             HHHHHHHHH
Confidence            876655443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.93  E-value=2.2e-23  Score=201.72  Aligned_cols=231  Identities=16%  Similarity=0.140  Sum_probs=169.7

Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhccccc--cccc----CCC
Q 015340          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NKP  177 (408)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e--~Dr~----nk~  177 (408)
                      +.+.|++++|||++...+.|++.|.++|......+++.   ..+++++++.+++..+|..|||.|.+  .|..    .+.
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~   83 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ   83 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence            45789999999999999999999999997654345443   46778999999999999999999976  4643    233


Q ss_pred             CCcccccccChHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhh
Q 015340          178 YLPLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (408)
Q Consensus       178 ~RPlasG~is~~~a~~~~~~l~~l~l~la----~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g  253 (408)
                      ++-+...+++++..+.+.+.+...+..++    ...+ |.+++..+++++.++.|+.  +|+++.+.|+ |++..++.+|
T Consensus        84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~-~~~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG  159 (303)
T COG1575          84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSD-WLVLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFG  159 (303)
T ss_pred             cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHH
Confidence            45555566677777666655554444333    3445 4455555788899999994  7889998885 7787877788


Q ss_pred             hHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHH
Q 015340          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLS  333 (408)
Q Consensus       254 ~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~  333 (408)
                      .+...+.|..     ..+   .+++..++..+.+.+.+..++..|+++|+|+|+|+|++|+||++|++++      ....
T Consensus       160 ~l~v~g~~yi-----qt~---~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~------~~l~  225 (303)
T COG1575         160 PLIVLGAYYI-----QTG---RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNA------RKLY  225 (303)
T ss_pred             HHHHHHHHHH-----hcc---cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhH------HHHH
Confidence            6666555542     222   2455555555556667778899999999999999999999999999999      7888


Q ss_pred             HHHHHHHHHHHHHHHHhcCcch
Q 015340          334 VSMLSIAYGAAVVVGASSPFLA  355 (408)
Q Consensus       334 ~~ll~~~y~~~i~~g~~~~~~~  355 (408)
                      ..++..+|.+.++........+
T Consensus       226 ~~l~~~a~l~~~~~~i~~~~~~  247 (303)
T COG1575         226 AALLVVAYLAIVIFVILGLFPV  247 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHhchH
Confidence            8888888876655433333333

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1e-23  Score=203.58  Aligned_cols=204  Identities=17%  Similarity=0.146  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC--C
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y  178 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~--~  178 (408)
                      .+.++|+|++++||.....+++..+.|.++|...  ..++.   .++++.++..++.++++++|+++|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            5678999999999999999999999999999752  23332   256788899999999999999999999999776  9


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHHH
Q 015340          179 LPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (408)
Q Consensus       179 RPlasG~is~~~a~~~~~~l~~l~l~la-~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~~  257 (408)
                      ||+++|++++++++.++.++.++|+.+. +..|+..-.+.++..++..+.||..     +||++....+..++..+.++.
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~NiviGg~aGa~Ppl  163 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQNIVIGGFAGAMPPL  163 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCcccceeeeecccccccc
Confidence            9999999999999999999999999887 6677665555555666778899973     799988665555444344455


Q ss_pred             HHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccc
Q 015340          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERL  323 (408)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a  323 (408)
                      +||.     ++.|.    .+...+++.+.+++|+...--.-++.-.||-+++|+..+|++-|++.+
T Consensus       164 iGwa-----Avtg~----~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t  220 (304)
T COG0109         164 IGWA-----AVTGS----ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRT  220 (304)
T ss_pred             ceee-----eeeCC----CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHH
Confidence            5553     35565    366667777888999855433445667778899999999999999998

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=5.1e-23  Score=200.89  Aligned_cols=173  Identities=21%  Similarity=0.189  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCC-
Q 015340          153 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQ-  231 (408)
Q Consensus       153 ~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~-  231 (408)
                      +.+...++|++||++|+|+|++|+|+||.+    +++.+..++.+..++|+.+++..|+ .+ ++ +++.+.++.||.+ 
T Consensus        67 ~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~-~l-l~-ll~~l~g~lYS~Gl  139 (307)
T PRK13591         67 GGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGM-LL-LA-FLPFITGYLYSKGI  139 (307)
T ss_pred             HHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhH-HH-HH-HHHHHHHHHhcCCC
Confidence            445678999999999999999999999987    7888999999999999999998884 33 23 4667779999953 


Q ss_pred             -cCc--cccccccchhHHHHHHhhhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHh
Q 015340          232 -LPL--LRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKK  308 (408)
Q Consensus       232 -lpp--~rlKr~~~l~~l~l~~~~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k  308 (408)
                       .+|  +|+|+.+.++++.+++.+|.....+.   +.  ..+.    . .+.....++.....++++.+||++|+|||++
T Consensus       140 k~~P~plklK~~~glGnl~V~i~~G~~i~g~~---g~--~~~~----~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~  209 (307)
T PRK13591        140 KIGKFALKLKGGLGVKNIVVGITWGGFIAGIA---GS--YCGS----L-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTL  209 (307)
T ss_pred             CCCCccccccCCCchhHHHHHHHHHHHHHHHH---Hh--hhhh----H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence             124  47899999999999988885332110   00  0111    0 1111111112222356778999999999999


Q ss_pred             cCCcccceeeccccccCchhHHHHHHHHHHHHHHHHHHHH
Q 015340          309 FGIKTLSVMLGKERLFFPQKVFRLSVSMLSIAYGAAVVVG  348 (408)
Q Consensus       309 ~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~y~~~i~~g  348 (408)
                      .|+||+|+++|++++      .++...+..++|++.++..
T Consensus       210 ~G~kTLPV~lG~~~A------~~l~~~l~~~~~l~li~~~  243 (307)
T PRK13591        210 AGIKTLPVSLGEQKT------RNLLLGIHLFSHLVLGIAL  243 (307)
T ss_pred             cCCeeEEEEECHHHH------HHHHHHHHHHHHHHHHHHH
Confidence            999999999999999      8898888888887665543

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.91  E-value=2.4e-22  Score=196.86  Aligned_cols=146  Identities=21%  Similarity=0.292  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC--CCC
Q 015340          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPY  178 (408)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~n--k~~  178 (408)
                      ..+++++|++++|||+|.+|.+.+..+ +++. ...+..  .+...++++++++++++++|++||++|+|+||+|  ||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~-~~~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAG-NLLNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHH-hhcccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            345788999999999999999876633 4442 222211  1223567788888999999999999999999995  789


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhhhHH
Q 015340          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (408)
Q Consensus       179 RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g~~~  256 (408)
                      ||+|||++|++++..++.++.++|+.+++.+|+..... .++++++.++||.     ++||++++++++++..++..+
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~  154 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRA  154 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHH
Confidence            99999999999999999999999999998888544433 4677888899996     589999999999887555333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.91  E-value=3.9e-22  Score=193.21  Aligned_cols=175  Identities=12%  Similarity=0.138  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 015340          145 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV  224 (408)
Q Consensus       145 ~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~~~~~~~~l~~~~~l  224 (408)
                      ..+++++..++..+++|++||++|+|+||+|+|+||+|||++|++++..++.++.++++.++.... ...     ...+.
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~-i~i-----~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLFM-NNV-----GWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HHHHH
Confidence            355666777888899999999999999999999999999999999999999888777777665441 111     11222


Q ss_pred             Hhhc-----cCCcCccccccccchhHHHHHHhhhhHHHHH--HHHHH-HHHHhcCCcccCcHHHHHHHHHHHHHHHHHHH
Q 015340          225 GTAY-----SVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP--VYVHI-QKYVLGRPLEIFTRPLMFATAFISCFCVVIAF  296 (408)
Q Consensus       225 ~~~Y-----s~~lpp~rlKr~~~l~~l~l~~~~g~~~~lg--~~~~~-~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~  296 (408)
                      .+.|     +.     ++|+.++.+|+.++...|..+..|  ++... .....|.+  ......+++.+..++.+.++|+
T Consensus       121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~--~~~~~~~~l~l~afl~~l~rEI  193 (299)
T PRK13592        121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP--LLSLPTVLLAFTMYFPSLIWEV  193 (299)
T ss_pred             HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc--hhhHHHHHHHHHHHHHHHHHHH
Confidence            3444     64     589999999999988777444222  22210 01112322  1111112333334445588999


Q ss_pred             HhhccChhhhHhcCCcccceeeccccccCchhHHHHHHHHHHHH
Q 015340          297 IKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVSMLSIA  340 (408)
Q Consensus       297 i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~ll~~~  340 (408)
                      .+|++| |||++ |.+|+|+++|.|++      .+++..+..++
T Consensus       194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA------~~ia~~l~ii~  229 (299)
T PRK13592        194 CRKIRA-PKDET-EYVTYSKLFGYKKA------TRFIEVVTLLD  229 (299)
T ss_pred             HHhhcC-Ccccc-CCeeechhccchhH------HHHHHHHHHHH
Confidence            999999 88886 59999999999999      77766554433

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.38  E-value=9.4e-13  Score=127.22  Aligned_cols=264  Identities=14%  Similarity=0.106  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHHhccccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCC--CC
Q 015340          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YL  179 (408)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~--~R  179 (408)
                      .+..+.|+|+.+|+--+..++....|..+|...+ +++     .+++..++..++.+++|.+||+++.+.|++++|  .|
T Consensus        91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~R  164 (409)
T KOG1380|consen   91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNR  164 (409)
T ss_pred             cchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhccc
Confidence            3567899999999987777777777888886543 222     356788899999999999999999999999776  89


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCcCccccccccchhHHHHHHhhh-hHHH
Q 015340          180 PLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG-LLTQ  257 (408)
Q Consensus       180 PlasG~is~~~a~~~~~~l~~l~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~~g-~~~~  257 (408)
                      |+++|++|+..|+.++.+....|+.+.++ +|+....++..-.++.+.+|+      ++||..++ +..+|.+-| +.+.
T Consensus       165 plv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihii-nTWvGavVGAIPPL  237 (409)
T KOG1380|consen  165 PLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHII-NTWVGAVVGAIPPL  237 (409)
T ss_pred             ccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhhh-hhHHHHHhccCCcc
Confidence            99999999999999998888888765544 664433333222344566677      37887643 333333334 3344


Q ss_pred             HHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHH--HHHHhhccChhhhHhcCCcccceeeccccccCchhHHHHHHH
Q 015340          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV--IAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFRLSVS  335 (408)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~--~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~i~~~  335 (408)
                      +||-.     ..|.    ..+..+++......|.+-  ..+..+++  +|..+.|.+.+++.=-.-..   +-.++-+.+
T Consensus       238 MGwAA-----asg~----l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~r---r~alr~s~a  303 (409)
T KOG1380|consen  238 MGWAA-----ASGL----LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCR---RVALRYSLA  303 (409)
T ss_pred             chhhh-----hccC----CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhh---HHHHHHHHH
Confidence            45432     2343    244456666667778743  33444443  34589999999885321111   001444444


Q ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHH
Q 015340          336 MLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRA--VDLSDNASILSFYMFIWKLYYA  399 (408)
Q Consensus       336 ll~~~y~~~i~~g~~~~~~~~~~~~~~~~~i~a~~l~~~~~~--vd~~~~~~~~~f~~~iw~l~~~  399 (408)
                      ++.++|..-. .+...  .|    +.+-...+...+.+...+  .|.+..++.+.|+.++|.|=..
T Consensus       304 ~~~L~~~~~~-~~lT~--~w----f~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhLP~l  362 (409)
T KOG1380|consen  304 FLPLSYAAPS-TDLTT--WW----FAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHLPLL  362 (409)
T ss_pred             Hhhhhccccc-cCccc--ce----eeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence            4444432111 11111  11    111111222223333322  2556677888999998886443

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.19  E-value=2.7e-11  Score=112.23  Aligned_cols=228  Identities=14%  Similarity=0.146  Sum_probs=149.6

Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHHhcccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccccCCC
Q 015340          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQT--LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKVNKP  177 (408)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~~~g~llA~~~--~~~~~~~~l~~~l~~~va~~l~~~a~~~~ND~~D~--e~Dr~nk~  177 (408)
                      ..+.+.|+...||+....++.|...|+.+|...  ..|++  .. ...++.++....+.++|.+|.|+|.  .+|++...
T Consensus        58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~--l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkad  134 (359)
T KOG4581|consen   58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR--LA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKAD  134 (359)
T ss_pred             HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh--HH-HHHHHHhhheeeecccchhhhhhhhhhcccccccc
Confidence            456788999999999999999999999999643  33433  22 2344556777789999999999996  47887777


Q ss_pred             CCcccccccChHHHHHHHHHHHHHHHHHH---HHhchHHH---HHHHHHHHHHHhhccCCcCccccccccchhHHHHHHh
Q 015340          178 YLPLASGEISMGTGIAITLASALMSLAYA---VMIRSPPF---IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL  251 (408)
Q Consensus       178 ~RPlasG~is~~~a~~~~~~l~~l~l~la---~~l~~~~~---~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~l~~~  251 (408)
                      +|.+....+.+.+...+.+.+..+|...+   ..+++...   .+.-+.++--.+.|+.+   +.+|...+ +.+++.+.
T Consensus       135 drtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyial-gdliili~  210 (359)
T KOG4581|consen  135 DRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIAL-GDLIILIL  210 (359)
T ss_pred             chhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEec-cCEEEEEe
Confidence            99999999999998888887777654432   33442221   11222334456778853   45676554 44444444


Q ss_pred             hhhHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHHHHHHHHHHhhccChhhhHhcCCcccceeeccccccCchhHHH
Q 015340          252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERLFFPQKVFR  331 (408)
Q Consensus       252 ~g~~~~lg~~~~~~~~v~g~~~~~~~~~~i~l~~~~~~~~~~~~~i~di~DiegD~k~GirTlpv~lG~k~a~~~~~l~~  331 (408)
                      +|.+..+-.|.. +   .|.. .-++.   -..+...+-+-++...|+.+|.|.||++|+-|+++.+|+..+      -.
T Consensus       211 fgpiavlfaf~~-q---~g~l-~~~~l---~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s------~i  276 (359)
T KOG4581|consen  211 FGPIAVLFAFAI-Q---TGHL-AIFPL---GYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTAS------HI  276 (359)
T ss_pred             echHHHHHHHHH-h---cCce-eEEee---hheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHH------HH
Confidence            554433222221 1   2322 11110   001112223345678899999999999999999999999999      77


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 015340          332 LSVSMLSIAYGAAVVVGAS  350 (408)
Q Consensus       332 i~~~ll~~~y~~~i~~g~~  350 (408)
                      ++..++.+-|.+..+.+..
T Consensus       277 ly~~llf~py~lf~i~~~~  295 (359)
T KOG4581|consen  277 LYAMLLFAPYLLFFIFALH  295 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888888866655543

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=89.97  E-value=0.98  Score=44.72  Aligned_cols=47  Identities=17%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccccCCCCCcccccccChHHHHHH
Q 015340          146 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI  194 (408)
Q Consensus       146 ~l~~~va~~l~~~a~~~~ND~~D~e~Dr~nk~~RPlasG~is~~~a~~~  194 (408)
                      .++.-+.+....+.++..|++.|.|+|+.|+|+-+..  ++..+.+..+
T Consensus       178 ~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l  224 (303)
T COG1575         178 ILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL  224 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence            3444556667777888999999999999987754322  3334444443

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=86.92  E-value=3.2  Score=40.41  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340          153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (408)
Q Consensus       153 ~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~  185 (408)
                      .++.......+||.-|+|.||.+ .+.-|..=|+
T Consensus       170 ~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        170 IFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            33445566688999999999984 4566766665

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=86.74  E-value=2.5  Score=42.19  Aligned_cols=48  Identities=19%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCC-CCCcccccccChHHHHHHHHHHH
Q 015340          149 ALVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASA  199 (408)
Q Consensus       149 ~~va~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a~~~~~~l~  199 (408)
                      ..+...+..+.....||+-|+|.||.+. +.-|.-=|   ++.+..+...+.
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l~~~l~  242 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVLFAILF  242 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHHHHHHH
Confidence            3455556667778899999999999864 45554334   455544433333

>PRK13591 ubiA prenyltransferase; Provisional

Probab=86.72  E-value=2.6  Score=41.97  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=19.0

Q ss_pred             HhhhcccccccccCC-CCCcccccc
Q 015340          162 AINQLSDVEVDKVNK-PYLPLASGE  185 (408)
Q Consensus       162 ~~ND~~D~e~Dr~nk-~~RPlasG~  185 (408)
                      .+||+-|.|.||.+. +.-|..=|+
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~  221 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE  221 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH
Confidence            689999999999864 466766564

>PLN00012 chlorophyll synthetase; Provisional

Probab=86.33  E-value=3.6  Score=42.20  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhhhccccccccc-CCCCCcccccc
Q 015340          153 AVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE  185 (408)
Q Consensus       153 ~~l~~~a~~~~ND~~D~e~Dr~-nk~~RPlasG~  185 (408)
                      .++...+....||+-|+|.|+. +++.-|..-|+
T Consensus       261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            3456667788999999999997 46777776665

>PLN02922 prenyltransferase

Probab=85.79  E-value=3.5  Score=41.18  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHhhhcccccccccCCC-CCcccccccChHHHHHHH
Q 015340          149 ALVPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT  195 (408)
Q Consensus       149 ~~va~~l~~~a~~~~ND~~D~e~Dr~nk~-~RPlasG~is~~~a~~~~  195 (408)
                      .-+...+..+.....||+-|+|+||.+++ .-|.-=|   ++.+..+.
T Consensus       193 ~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~  237 (315)
T PLN02922        193 ASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRVV  237 (315)
T ss_pred             HHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHHH
Confidence            33444556667888999999999999754 4454334   44444443

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=85.70  E-value=3.6  Score=40.90  Aligned_cols=39  Identities=15%  Similarity=0.112  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhhhcccccccccCC-CCCcccccccChHHHHHH
Q 015340          153 AVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAI  194 (408)
Q Consensus       153 ~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a~~~  194 (408)
                      ..+........||+-|+|+||.+. +.-|.-=|   ++.+..+
T Consensus       183 ~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l  222 (304)
T PRK07419        183 LGLATSLILFCSHFHQVEDDLAAGKRSPIVRLG---TKRGAQL  222 (304)
T ss_pred             HHHHHHHHHHHcCCcchhhHHHcCCcceeeeec---hHhHHHH
Confidence            345566778899999999999864 45554333   4444443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=84.38  E-value=8.4  Score=37.70  Aligned_cols=37  Identities=19%  Similarity=0.140  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHhhhccccccccc-CCCCCccccccc
Q 015340          150 LVPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGEI  186 (408)
Q Consensus       150 ~va~~l~~~a~~~~ND~~D~e~Dr~-nk~~RPlasG~i  186 (408)
                      +++.++-...-..+|++.|+|.|+. +.|.-|..-|+-
T Consensus       166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~  203 (281)
T TIGR01474       166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDN  203 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhh
Confidence            3455555666778999999999997 456777777753

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=84.31  E-value=4.1  Score=40.58  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             HHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340          155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (408)
Q Consensus       155 l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~  185 (408)
                      +...+....||+-|+|.||.. +|.-|..-|+
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            445566789999999999984 5677776665

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=83.30  E-value=6.2  Score=38.85  Aligned_cols=57  Identities=9%  Similarity=0.089  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhhhcccccccccC-CCCCcccccccChHHHHHHHHHHHHHHHHHHHHhc
Q 015340          151 VPAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR  210 (408)
Q Consensus       151 va~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~l~~l~l~la~~l~  210 (408)
                      +++.+...+...+||+-|.|.||.+ ++.-|.   ++..+.+..+...+.+++.++...++
T Consensus       167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344446677889999999999975 444443   45567777776666666655444444

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=82.84  E-value=13  Score=36.67  Aligned_cols=51  Identities=16%  Similarity=0.105  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhhhcccccccccC-CCCCcccccccChHHHHHHHHHHHHHHHHH
Q 015340          152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAY  205 (408)
Q Consensus       152 a~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~l~~l~l~l  205 (408)
                      +..+...+...+||+-|+|.|+.. ++.-|.-   +..+.+..+..++.+++..+
T Consensus       173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~---lG~~~a~~~~~~~~~~a~~~  224 (282)
T PRK12875        173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATV---LGERRTYAYCAACWLLAAAA  224 (282)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHcCCccchhh---ccHhhHHHHHHHHHHHHHHH
Confidence            344556666889999999999974 4555553   33455555555554444443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=82.66  E-value=6  Score=39.26  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340          154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (408)
Q Consensus       154 ~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~  185 (408)
                      ++...+....||+-|+|.|+.+ +|.-|..-|+
T Consensus       193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~  225 (306)
T TIGR02056       193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI  225 (306)
T ss_pred             HHHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence            3456677789999999999975 4566665554

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=81.90  E-value=18  Score=37.37  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHhhhcccccc
Q 015340          151 VPAVLMHIYVVAINQLSDVEV  171 (408)
Q Consensus       151 va~~l~~~a~~~~ND~~D~e~  171 (408)
                      -+..++..--.++|++++.+.
T Consensus       112 ta~~~~~~ie~a~N~Iw~v~~  132 (412)
T PRK04214        112 TLLILLHTIEQTFNRIWRVNS  132 (412)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC
Confidence            344556667788999998654

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=81.65  E-value=7.2  Score=38.18  Aligned_cols=47  Identities=23%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccCC-CCCcccccccChHHHHHHHHHHH
Q 015340          150 LVPAVLMHIYVVAINQLSDVEVDKVNK-PYLPLASGEISMGTGIAITLASA  199 (408)
Q Consensus       150 ~va~~l~~~a~~~~ND~~D~e~Dr~nk-~~RPlasG~is~~~a~~~~~~l~  199 (408)
                      .+...+........||+-|+|.||.+. +.-|.-=|   .+.+..+...+.
T Consensus       174 ~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~  221 (293)
T PRK06080        174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALL  221 (293)
T ss_pred             HHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHH
Confidence            334445666777899999999999853 44454334   444444433333

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=80.88  E-value=6.3  Score=39.69  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340          152 PAVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (408)
Q Consensus       152 a~~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~  185 (408)
                      ..++...+...+||+-|+|.|+.. ++.-|+.=|+
T Consensus       188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~  222 (331)
T PRK12392        188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence            344556667779999999999985 4566665554

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=80.67  E-value=7.7  Score=37.85  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhhhcccccccccC-CCCCcccccc
Q 015340          154 VLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (408)
Q Consensus       154 ~l~~~a~~~~ND~~D~e~Dr~n-k~~RPlasG~  185 (408)
                      .+...+....||+-|.|.||.+ ++.-|..=|+
T Consensus       171 ~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~  203 (283)
T TIGR01476       171 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV  203 (283)
T ss_pred             HHHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence            3445566789999999999985 4566665554

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00