Citrus Sinensis ID: 015342

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY
ccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHEEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccEEEEEEHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHEEHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MFLFSFVTYYTSslltdcyrtadpvfgkrnytYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKrsncfhesggnnpchmssnpymILFGVMEIFlsqipdfdqIWWLSIVAAVMSFTYSAIGLALGIVQVAangafkgsltgisigTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQdtlksppaesktMKKAAKLSIAVTTAFYMLCGCmgyaafgdfapgnlltgfgfynpfwllDIANAAIVVHLVGAYQVFCQPIFAFVEKQvaeswpdsyflskefkipvpgllpyklnLFRLVWRSCFVILTTVISMLLPFFNDVVGILGalgfwpltvyFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGagsivgvvndvkaytpfktty
MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY
MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY
*FLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDT**************AKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPF****
MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY
MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKS***********AKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY
MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPF****
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
ooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
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MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
Q38967493 Amino acid permease 2 OS= yes no 1.0 0.827 0.833 0.0
Q9FN04466 Amino acid permease 4 OS= no no 1.0 0.875 0.804 0.0
Q39134476 Amino acid permease 3 OS= no no 1.0 0.857 0.757 0.0
Q8GUM3480 Amino acid permease 5 OS= no no 0.997 0.847 0.665 1e-168
Q42400485 Amino acid permease 1 OS= no no 1.0 0.841 0.574 1e-148
P92934481 Amino acid permease 6 OS= no no 0.992 0.841 0.588 1e-144
O80592475 Amino acid permease 8 OS= no no 0.987 0.848 0.556 1e-141
Q9FF99467 Probable amino acid perme no no 0.955 0.835 0.483 1e-101
Q9C733453 Lysine histidine transpor no no 0.740 0.666 0.282 1e-26
Q9FKS8446 Lysine histidine transpor no no 0.720 0.659 0.276 1e-25
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function desciption
 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/409 (83%), Positives = 375/409 (91%), Gaps = 1/409 (0%)

Query: 1   MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGI 60
           M LFS VT Y+S+LL+DCYRT D V GKRNYTYMDAVRSILGG K K CGLIQYLNLFGI
Sbjct: 85  MLLFSLVTLYSSTLLSDCYRTGDAVSGKRNYTYMDAVRSILGGFKFKICGLIQYLNLFGI 144

Query: 61  AIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWL 120
           AIGYTIAASISMMAIKRSNCFH+SGG +PCHMSSNPYMI+FGV EI LSQ+PDFDQIWW+
Sbjct: 145 AIGYTIAASISMMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWI 204

Query: 121 SIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFA 180
           SIVAAVMSFTYSAIGLALGIVQVAANG FKGSLTGISIGTVTQTQKIWR+FQALGDIAFA
Sbjct: 205 SIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFA 264

Query: 181 YSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLT 240
           YSYSV+LIEIQDT++SPPAESKTMKKA K+SIAVTT FYMLCG MGYAAFGD APGNLLT
Sbjct: 265 YSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLT 324

Query: 241 GFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVP 300
           GFGFYNPFWLLDIANAAIVVHLVGAYQVF QPIFAF+EK VAE +PD+ FLSKEF+I +P
Sbjct: 325 GFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIP 384

Query: 301 GLL-PYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQ 359
           G   PYK+N+FR+V+RS FV+ TTVISML+PFFNDVVGILGALGFWPLTVYFPVEMYI Q
Sbjct: 385 GFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQ 444

Query: 360 KKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY 408
           +K+ KWSTRW+CLQMLS+ACLV+S++AG GSI GV+ D+K Y PFK+TY
Sbjct: 445 RKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKSTY 493
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
224083500463 amino acid permease [Populus trichocarpa 1.0 0.881 0.833 0.0
15242347493 amino acid permease 2 [Arabidopsis thali 1.0 0.827 0.833 0.0
297806953493 hypothetical protein ARALYDRAFT_487723 [ 1.0 0.827 0.833 0.0
21536895493 amino acid transport protein AAP2 [Arabi 1.0 0.827 0.828 0.0
297793975466 hypothetical protein ARALYDRAFT_496573 [ 1.0 0.875 0.809 0.0
20260650466 amino acid transporter AAP4 [Arabidopsis 1.0 0.875 0.806 0.0
15237539466 amino acid permease 4 [Arabidopsis thali 1.0 0.875 0.804 0.0
608671466 amino acid transporter [Arabidopsis thal 1.0 0.875 0.804 0.0
41367038487 amino acid permease [Brassica napus] 1.0 0.837 0.809 0.0
21536979466 amino acid transporter AAP4 [Arabidopsis 1.0 0.875 0.799 0.0
>gi|224083500|ref|XP_002307053.1| amino acid permease [Populus trichocarpa] gi|222856502|gb|EEE94049.1| amino acid permease [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/408 (83%), Positives = 374/408 (91%)

Query: 1   MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGI 60
           MFLFS VTYYTSSLLTDCYRT DP  GKRNYTYMDAV+SILGG KV  CGL+QY+ LFGI
Sbjct: 56  MFLFSLVTYYTSSLLTDCYRTGDPDTGKRNYTYMDAVQSILGGVKVNLCGLVQYIGLFGI 115

Query: 61  AIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWL 120
           AIGYTIA+SISMMAIKRSNCFH+SGG NPCH+SSNPYMI+FG+ EI LSQIPDFDQ+WWL
Sbjct: 116 AIGYTIASSISMMAIKRSNCFHQSGGQNPCHISSNPYMIIFGITEILLSQIPDFDQLWWL 175

Query: 121 SIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFA 180
           SIVAAVMSFTYS IGL LGI +VAANG FKGSLTGISIGTVT+T+KIWRSFQALG IAFA
Sbjct: 176 SIVAAVMSFTYSTIGLGLGIGKVAANGTFKGSLTGISIGTVTETEKIWRSFQALGAIAFA 235

Query: 181 YSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLT 240
           YSYSVILIEIQDT+KSPPAESKTMKKAAK+SI VTT FYMLCGCMGYAAFGD APGNLLT
Sbjct: 236 YSYSVILIEIQDTIKSPPAESKTMKKAAKISIVVTTTFYMLCGCMGYAAFGDQAPGNLLT 295

Query: 241 GFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVP 300
           GFGFYNP+WL+DIAN AIV+HL+GAYQVFCQP+FAF+EK   + WP++YF++KEFKIPVP
Sbjct: 296 GFGFYNPYWLIDIANVAIVIHLIGAYQVFCQPLFAFIEKWANQKWPENYFITKEFKIPVP 355

Query: 301 GLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQK 360
           G  PYKLNLFR+VWR+ FV+LTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYI QK
Sbjct: 356 GFRPYKLNLFRMVWRTIFVLLTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIVQK 415

Query: 361 KITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY 408
           KI KWSTRW+CLQMLSMACLV+S++A AGSI GVV D+K Y PFKT+Y
Sbjct: 416 KIPKWSTRWICLQMLSMACLVISLVAVAGSIAGVVLDLKVYKPFKTSY 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15242347|ref|NP_196484.1| amino acid permease 2 [Arabidopsis thaliana] gi|75220717|sp|Q38967.1|AAP2_ARATH RecName: Full=Amino acid permease 2; AltName: Full=Amino acid transporter AAP2 gi|510236|emb|CAA50672.1| amine acid permease [Arabidopsis thaliana] gi|9955509|emb|CAC05448.1| amino acid transport protein AAP2 [Arabidopsis thaliana] gi|19699271|gb|AAL91247.1| AT5g09220/T5E8_20 [Arabidopsis thaliana] gi|332003969|gb|AED91352.1| amino acid permease 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806953|ref|XP_002871360.1| hypothetical protein ARALYDRAFT_487723 [Arabidopsis lyrata subsp. lyrata] gi|297317197|gb|EFH47619.1| hypothetical protein ARALYDRAFT_487723 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21536895|gb|AAM61227.1| amino acid transport protein AAP2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297793975|ref|XP_002864872.1| hypothetical protein ARALYDRAFT_496573 [Arabidopsis lyrata subsp. lyrata] gi|297310707|gb|EFH41131.1| hypothetical protein ARALYDRAFT_496573 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|20260650|gb|AAM13223.1| amino acid transporter AAP4 [Arabidopsis thaliana] gi|28059439|gb|AAO30058.1| amino acid transporter AAP4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15237539|ref|NP_201190.1| amino acid permease 4 [Arabidopsis thaliana] gi|75262737|sp|Q9FN04.1|AAP4_ARATH RecName: Full=Amino acid permease 4; AltName: Full=Amino acid transporter AAP4 gi|10177673|dbj|BAB11033.1| amino acid transporter AAP4 [Arabidopsis thaliana] gi|332010421|gb|AED97804.1| amino acid permease 4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|608671|emb|CAA54631.1| amino acid transporter [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|41367038|emb|CAF22024.1| amino acid permease [Brassica napus] Back     alignment and taxonomy information
>gi|21536979|gb|AAM61320.1| amino acid transporter AAP4 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2184707493 AAP2 "amino acid permease 2" [ 1.0 0.827 0.833 5.6e-187
TAIR|locus:2163981466 AAP4 "amino acid permease 4" [ 1.0 0.875 0.804 2.9e-183
TAIR|locus:2031402476 AAP3 "amino acid permease 3" [ 1.0 0.857 0.757 7.3e-178
TAIR|locus:2205876480 AAP5 "amino acid permease 5" [ 0.997 0.847 0.665 1e-155
TAIR|locus:2168912481 AAP6 "amino acid permease 6" [ 0.992 0.841 0.588 6.5e-138
TAIR|locus:2016600485 AAP1 "amino acid permease 1" [ 1.0 0.841 0.574 5.8e-137
TAIR|locus:2201871475 AAP8 "amino acid permease 8" [ 0.985 0.846 0.558 6.4e-131
TAIR|locus:2172868467 AAP7 "amino acid permease 7" [ 0.963 0.841 0.48 1.4e-103
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.426 0.394 0.320 3.5e-29
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.458 0.417 0.301 7.6e-29
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1813 (643.3 bits), Expect = 5.6e-187, P = 5.6e-187
 Identities = 341/409 (83%), Positives = 375/409 (91%)

Query:     1 MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGI 60
             M LFS VT Y+S+LL+DCYRT D V GKRNYTYMDAVRSILGG K K CGLIQYLNLFGI
Sbjct:    85 MLLFSLVTLYSSTLLSDCYRTGDAVSGKRNYTYMDAVRSILGGFKFKICGLIQYLNLFGI 144

Query:    61 AIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWL 120
             AIGYTIAASISMMAIKRSNCFH+SGG +PCHMSSNPYMI+FGV EI LSQ+PDFDQIWW+
Sbjct:   145 AIGYTIAASISMMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWI 204

Query:   121 SIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFA 180
             SIVAAVMSFTYSAIGLALGIVQVAANG FKGSLTGISIGTVTQTQKIWR+FQALGDIAFA
Sbjct:   205 SIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFA 264

Query:   181 YSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLT 240
             YSYSV+LIEIQDT++SPPAESKTMKKA K+SIAVTT FYMLCG MGYAAFGD APGNLLT
Sbjct:   265 YSYSVVLIEIQDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLT 324

Query:   241 GFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVP 300
             GFGFYNPFWLLDIANAAIVVHLVGAYQVF QPIFAF+EK VAE +PD+ FLSKEF+I +P
Sbjct:   325 GFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIP 384

Query:   301 GLL-PYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQ 359
             G   PYK+N+FR+V+RS FV+ TTVISML+PFFNDVVGILGALGFWPLTVYFPVEMYI Q
Sbjct:   385 GFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQ 444

Query:   360 KKITKWSTRWMCLQMLSMACLVLSIIAGAGSIVGVVNDVKAYTPFKTTY 408
             +K+ KWSTRW+CLQMLS+ACLV+S++AG GSI GV+ D+K Y PFK+TY
Sbjct:   445 RKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKSTY 493
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS
GO:0016020 "membrane" evidence=ISS
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
GO:0015800 "acidic amino acid transport" evidence=IDA
GO:0015804 "neutral amino acid transport" evidence=IDA
GO:0005887 "integral to plasma membrane" evidence=TAS
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN04AAP4_ARATHNo assigned EC number0.80441.00.8755nono
Q39134AAP3_ARATHNo assigned EC number0.75731.00.8571nono
Q38967AAP2_ARATHNo assigned EC number0.83371.00.8275yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-97
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  296 bits (761), Expect = 2e-97
 Identities = 120/396 (30%), Positives = 188/396 (47%), Gaps = 31/396 (7%)

Query: 1   MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGI 60
           + +   ++ YT  LL  C +  D V GKR  +Y D    + G            +NLFG+
Sbjct: 40  LVIVGLISLYTLHLLVQCSKYVDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGV 99

Query: 61  AIGYTIAASISMMAIKRSNCFHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWL 120
            I Y I A  ++ AI  S           CH+S   ++I+FG++ I LS IP+   +  L
Sbjct: 100 CISYLIFAGDNLPAIFDSFFDT-------CHISLVYFIIIFGLIFIPLSFIPNLSALSIL 152

Query: 121 SIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTVTQTQKIWRSFQALGDIAFA 180
           S+VAAV S       + + ++ VA  G    +  G+         K+ R F A+G I FA
Sbjct: 153 SLVAAVSSLY-----IVILVLSVAELG--VLTAQGVGSLGAKTNIKLARLFLAIGIIVFA 205

Query: 181 YSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLT 240
           +    +L+ IQ+T+KSP    K M K    +I + T  Y+L G +GY AFG+   GN+L 
Sbjct: 206 FEGHAVLLPIQNTMKSPSKF-KAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILL 264

Query: 241 GFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVP 300
                   WL+DIAN  +V+HL+ +Y +   PI   VE  +             F+    
Sbjct: 265 NLP--KSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLL-------------FRKGAS 309

Query: 301 GLLPYKLNLFRLVWRSCFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQK 360
           G    K  L R+V RS  V++T +I++ +PF  D + ++GA    PLT   P   ++  K
Sbjct: 310 GKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLK 369

Query: 361 KITKWSTRWMCLQM-LSMACLVLSIIAGAGSIVGVV 395
           K  K S   +     L + C+V+ ++  A  + G++
Sbjct: 370 KTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLI 405

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.69
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.58
PRK15132403 tyrosine transporter TyrP; Provisional 99.49
PRK10483414 tryptophan permease; Provisional 99.41
PRK09664415 tryptophan permease TnaB; Provisional 99.35
PRK13629443 threonine/serine transporter TdcC; Provisional 99.29
TIGR00814397 stp serine transporter. The HAAAP family includes 99.23
PRK10655438 potE putrescine transporter; Provisional 98.58
PRK10746461 putative transport protein YifK; Provisional 98.58
PRK10249458 phenylalanine transporter; Provisional 98.49
PRK10644445 arginine:agmatin antiporter; Provisional 98.49
PRK11021410 putative transporter; Provisional 98.49
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.48
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 98.43
TIGR00909429 2A0306 amino acid transporter. 98.42
TIGR00913478 2A0310 amino acid permease (yeast). 98.4
PRK10238456 aromatic amino acid transporter; Provisional 98.39
PRK15049499 L-asparagine permease; Provisional 98.34
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 98.33
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.33
PRK10580457 proY putative proline-specific permease; Provision 98.32
PRK10197446 gamma-aminobutyrate transporter; Provisional 98.31
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 98.3
PRK11387471 S-methylmethionine transporter; Provisional 98.28
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 98.28
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.24
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 98.17
PRK11357445 frlA putative fructoselysine transporter; Provisio 98.15
TIGR00911501 2A0308 L-type amino acid transporter. 98.11
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.08
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.07
TIGR00906557 2A0303 cationic amino acid transport permease. 98.01
TIGR00930 953 2a30 K-Cl cotransporter. 97.97
TIGR00912359 2A0309 spore germination protein (amino acid perme 97.94
PRK10836489 lysine transporter; Provisional 97.88
COG0531466 PotE Amino acid transporters [Amino acid transport 97.83
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 97.81
KOG1287479 consensus Amino acid transporters [Amino acid tran 97.73
COG3949349 Uncharacterized membrane protein [Function unknown 97.66
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 97.42
PRK15238496 inner membrane transporter YjeM; Provisional 97.39
PF03845320 Spore_permease: Spore germination protein; InterPr 96.88
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 96.66
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 96.64
PRK11375484 allantoin permease; Provisional 96.6
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 96.41
PRK09442483 panF sodium/panthothenate symporter; Provisional 96.2
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 96.11
COG1457442 CodB Purine-cytosine permease and related proteins 96.08
PRK11017404 codB cytosine permease; Provisional 95.0
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 94.54
KOG1289550 consensus Amino acid transporters [Amino acid tran 93.83
KOG1286554 consensus Amino acid transporters [Amino acid tran 93.3
TIGR00813407 sss transporter, SSS family. have different number 92.97
COG0591493 PutP Na+/proline symporter [Amino acid transport a 92.92
COG0833541 LysP Amino acid transporters [Amino acid transport 92.77
PRK12488549 acetate permease; Provisional 91.8
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 89.18
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 81.91
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-54  Score=425.45  Aligned_cols=362  Identities=37%  Similarity=0.669  Sum_probs=317.1

Q ss_pred             ChhHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcc
Q 015342            1 MFLFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNC   80 (408)
Q Consensus         1 l~~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~   80 (408)
                      |++.++++.||..||.+|.+..++..++|.++|.|+++++||+++++++.+++.+.++|.|+.|++..||++..+.+..|
T Consensus        75 Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~  154 (437)
T KOG1303|consen   75 LLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVS  154 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46789999999999999999888888889999999999999999999999999999999999999999999999998765


Q ss_pred             ccCCCCCCCCccCCchhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccccccc
Q 015342           81 FHESGGNNPCHMSSNPYMILFGVMEIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGT  160 (408)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~  160 (408)
                      .+..      ..+.+.|+++++++.+|++++||+++++++|..|.++++.|..+.+..++.++.+...++.+....+   
T Consensus       155 ~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~---  225 (437)
T KOG1303|consen  155 LNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLG---  225 (437)
T ss_pred             Cccc------cccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCC---
Confidence            4321      2346778999999999999999999999999999999998888888877777655432222221110   


Q ss_pred             ccchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCcccc
Q 015342          161 VTQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDFAPGNLLT  240 (408)
Q Consensus       161 ~~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~v~~~il~  240 (408)
                      ..  ..   .|+++|++.|+|++|.++||||++||+|    ++|+|++..++.+++.+|+.+++.||++|||++++|++.
T Consensus       226 ~~--~~---~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~  296 (437)
T KOG1303|consen  226 TI--PT---VFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILL  296 (437)
T ss_pred             CC--cc---hhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhh
Confidence            01  10   1799999999999999999999999999    779999999999999999999999999999999999999


Q ss_pred             ccCcCCChHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHhhhCCCCccCCccccccCCCCCCcccchhhHHHHHHHHH
Q 015342          241 GFGFYNPFWLLDIANAAIVVHLVGAYQVFCQPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRLVWRSCFVI  320 (408)
Q Consensus       241 n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~  320 (408)
                      |++  .|.|....+|+++.+|++.+|++..+|.++.+|+....++++  +..             +....|.+.|+.+++
T Consensus       297 s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~~-------------~~~~~R~~~Rt~~v~  359 (437)
T KOG1303|consen  297 SLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FKK-------------RSLVLRLLVRTFFVA  359 (437)
T ss_pred             ccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--ccc-------------cccceeeehhhHHHH
Confidence            974  689999999999999999999999999999999998765322  100             124689999999999


Q ss_pred             HHHHHHHHccchHHHHHHhhhhhhhhhHhhhhHHHHHHhhccCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 015342          321 LTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCLQML-SMACLVLSIIAGAGSIVGVVND  397 (408)
Q Consensus       321 ~~~~lA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~~lk~~~~~~~~~~~~~~~~~-~~~g~~~~v~gt~~si~~ii~~  397 (408)
                      .+..+|+.+|+|+++++++||+...++++++|+++|++.+|+++++.+|+.++.+ .++|+++++.++.++++.++.+
T Consensus       360 ~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  360 VTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999988888 7999999999999999988763

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 40/266 (15%), Positives = 73/266 (27%), Gaps = 84/266 (31%)

Query: 161 VTQTQKIWRSFQALGDIAFAYSYSV----ILIEIQDTLKSPPAESKTMKKAAKLSIAVTT 216
           + Q  +++   Q          Y+V      ++++  L         ++ A  + I    
Sbjct: 113 IEQRDRLYNDNQVFAK------YNVSRLQPYLKLRQALLE-------LRPAKNVLI---- 155

Query: 217 AFY-ML-CG--CMGYAAFGDFAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFC-- 270
               +L  G   +       +    +     F   FWL ++ N      ++   Q     
Sbjct: 156 --DGVLGSGKTWVALDVCLSYK---VQCKMDF-KIFWL-NLKNCNSPETVLEMLQKLLYQ 208

Query: 271 -------QPIFAFVEKQVAESWPDSYFLSKEFKIPVPGLLPYKLNLFRL--VWRS----- 316
                  +   +   K    S      L +  K       PY+  L  L  V  +     
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSK-----PYENCLLVLLNVQNAKAWNA 261

Query: 317 ----CFVILTTVISMLLPFFNDVVGILGALGFWPLTVYFPVEMYIAQKKITKWSTRWMCL 372
               C ++LTT        F  V   L A           + +      +T    + + L
Sbjct: 262 FNLSCKILLTTR-------FKQVTDFLSA------ATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 373 QMLSM--------AC----LVLSIIA 386
           + L                  LSIIA
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIA 334

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.92
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.59
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 98.43
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 96.95
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 93.43
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 84.0
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=98.92  E-value=1.4e-07  Score=93.60  Aligned_cols=205  Identities=10%  Similarity=-0.041  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHhhccccCCCcCCcccccHHHHHHHHccCCcceehHHHHHHHHhhhHHHHHHhhhhhHHHHHhhcccc
Q 015342            3 LFSFVTYYTSSLLTDCYRTADPVFGKRNYTYMDAVRSILGGAKVKACGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFH   82 (408)
Q Consensus         3 ~~~~~~~ys~~lL~~~~~~~~~~~~~~~~sY~dl~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~d~l~~i~~~~~~~   82 (408)
                      +.+++.........+...+. |.    .-++-+.+++.+||+...+......+.......++....++.+...++.    
T Consensus        48 i~~~~~~~~a~~~~el~~~~-p~----~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  118 (445)
T 3l1l_A           48 VTIIGALGLSMVYAKMSFLD-PS----PGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI----  118 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-CC----TTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG----
T ss_pred             HHHHHHHHHHHHHHHHHccC-CC----CCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc----
Confidence            34455555555555554331 22    2256667899999998888888887776666666666666655433221    


Q ss_pred             CCCCCCCCccCCchhHHHHHHH-HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCccccccccc
Q 015342           83 ESGGNNPCHMSSNPYMILFGVM-EIFLSQIPDFDQIWWLSIVAAVMSFTYSAIGLALGIVQVAANGAFKGSLTGISIGTV  161 (408)
Q Consensus        83 ~~~~~~~~~~~~~~~~~i~~~v-~~pl~~~~~l~~L~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~  161 (408)
                       .      ..+...+.+...++ .+-....+..+..+.+..+.....+.   ..+...+ -+....+.+ ...+ ++. +
T Consensus       119 -~------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~---~~~~~~i-~~~~~~~~~-~~~~-~~~-~  184 (445)
T 3l1l_A          119 -L------KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI---PIVGIAV-FGWFWFRGE-TYMA-AWN-V  184 (445)
T ss_dssp             -G------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHHHHH-TTSTTCCCC-CCCC-C----
T ss_pred             -c------cccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHhChh-hccc-ccC-c
Confidence             0      00001111111111 11112233445555554333222221   1111111 111111111 1110 110 1


Q ss_pred             cchhHHHHHHHHhhhHHhhccccchhHhhhhhhCCCCchhhhhHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 015342          162 TQTQKIWRSFQALGDIAFAYSYSVILIEIQDTLKSPPAESKTMKKAAKLSIAVTTAFYMLCGCMGYAAFGDF  233 (408)
Q Consensus       162 ~~~~~~~~~~~a~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~s~~~~~~~Y~~vg~~gY~~fG~~  233 (408)
                      .......+.+.++....|+|.|........+|+|||   +|+.+|++..+...+.++|...........+.+
T Consensus       185 ~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          185 SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             --------HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            111123456688889999999999999999999999   478999999999999999999988766666543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00