Citrus Sinensis ID: 015413

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
Protein Sequence
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCYAEDFK
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEcEEEEcccHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHcccccEEEEEEEccEEEEcccccEEEccccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHcccEEEcccccEEEEEccccccEEEEEEccccEEEEEEEEEccccccccccccccHHHHHHHccccccccccEEEEEEEEEccccccccccEEEEEcccccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccEEcHHHHHHHHccccccccHccccccccccccccccHHHccccccccEEccccHHHHccccHHHEEEEcccEEEEEEEEEccEEEEEcccEEEEccccHHHHHHcccHcHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHccEEEccccccEEEEEccccEEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccEEEccEEEEEEEEEccccccccccEEEEEcccccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mtgneseselpvppyppieptafDLIVIGTGLPESVISAAAsasgksvlhldpnpfygshfsslSIADLTHflnshstpssvcpdplysdveiSNYASRLLsqhprnfnldvsgprvlFCADHAVDLMLKSGASHYlefksidatfmldadaklcsvpdsraaifkdkslglmEKNQLMRFFKLVQGhlsldeseennvriseedldspFAEFLtkmklphkIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGAliypiygqgelpqaFCRRAAVKGCLYVLRMPvislltdqnsgsykgvrlasgqdilshklvldpsftvpgslasSHQQLQESFQAfslsdnkgkvargicitrsslkpdlsnflvifpprckidswyfclcyaedfk
Flexible Loop (DISEMBL)
mtgneseselpvppyppIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISlltdqnsgsYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAfslsdnkgKVARGICItrsslkpdlsnfLVIFPPRCKIDSWYFCLCYAEDFK
Low Complexity Region (SEG)
MTGNeseselpvppyppiepTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCYAEDFK
Disordered region (IsUnstruct)
******************EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHS***SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLS******************PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV************************GKVARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCYAE***
Disordered Region (DISOPRED)
**************YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF**KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSL*****************DNKGKVARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCYAED**
Disordered Region (DISEMBL)
***********VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCYAEDFK
Disordered Region (DISPRO)
******ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHST*SS****PLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGS************QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCYA**F*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCYAEDFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	407	2.2.26 [Sep-21-2011]
Q9V8W3	511	Rab proteins geranylgeran	yes	no	0.737	0.587	0.340	5e-41
Q10305	440	Probable secretory pathwa	yes	no	0.732	0.677	0.28	5e-29
P50396	447	Rab GDP dissociation inhi	yes	no	0.800	0.729	0.265	8e-29
P21856	447	Rab GDP dissociation inhi	yes	no	0.800	0.729	0.265	1e-28
Q6Q7J2	445	Rab GDP dissociation inhi	no	no	0.687	0.629	0.279	2e-28
O97555	447	Rab GDP dissociation inhi	yes	no	0.800	0.729	0.263	3e-28
Q8HXX7	447	Rab GDP dissociation inhi	N/A	no	0.776	0.706	0.269	3e-28
Q7YQM0	447	Rab GDP dissociation inhi	N/A	no	0.776	0.706	0.269	4e-28
P50398	447	Rab GDP dissociation inhi	yes	no	0.805	0.733	0.264	4e-28
Q5RCE1	445	Rab GDP dissociation inhi	no	no	0.687	0.629	0.283	6e-28

>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1

 Score =  169 bits (427), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 26/326 (7%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P  FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P
Sbjct: 6   PEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEP 65

Query: 80  SSVCPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS 131
            S   +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS
Sbjct: 66  HSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKS 124

Query: 132 GASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSL 191
               Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F          
Sbjct: 125 NICRYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACN----- 178

Query: 192 DESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251
           D  E+     S E     F E+L   ++  KI S V+ AIAM        E       G+
Sbjct: 179 DYGEDKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GM 231

Query: 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS 311
            R   +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS
Sbjct: 232 QRTQRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNS 289

Query: 312 GSYKGVRLASGQDILSHKLVLDPSFT 337
             +  +  ++G+ + +  +V  P +T
Sbjct: 290 NEF--LLSSAGKTLRAKNVVSAPGYT 313

Binds unprenylated Rab proteins, presents it to the catalytic component B, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab to a protein acceptor.
Drosophila melanogaster (taxid: 7227)

>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1

 Score =  129 bits (323), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 166/350 (47%), Gaps = 52/350 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E V+S   S  GK VLH+D N +YG+  +SL++  L         P   
Sbjct: 5   YDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFR----PGEQ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  D               R++ +D+  P+ L       ++++ +  + Y+EFK I
Sbjct: 61  RPESLGRD---------------RDWCVDLV-PKFLMANGDLTNILIYTDVTRYIEFKQI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
             +++   D ++  VP +     K   + L EK +  +F + V  +   D S   ++ I 
Sbjct: 105 AGSYVY-RDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINID 163

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
            + ++S F +F     L    +  + +A+A+   D  + +   +TR+   R+ LY SSI 
Sbjct: 164 RDSMESVFKKF----GLQSGTQDFIGHAMALYLDDAYLKKPARETRE---RILLYASSIA 216

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           +F  +    IYP+YG GELPQ F R +A+ G  Y+L  PV  ++   + G   GVR  SG
Sbjct: 217 KFGKS--PYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYG-DDGVAIGVR--SG 271

Query: 323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICI 371
             +   K ++ DPS+             +E  ++       G++ R ICI
Sbjct: 272 DQVAKAKQIIGDPSY------------FREKVRSV------GRLVRAICI 303

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  128 bits (322), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 181/384 (47%), Gaps = 58/384 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   +I       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQILEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PD 379
            G+     +L+ DPS+ +P  +  +                 G+V R ICI    +K  +
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVQKA-----------------GQVIRIICILSHPIKNTN 312

Query: 380 LSNFLVIFPPRCKID---SWYFCL 400
            +N   I  P+ +++     Y C+
Sbjct: 313 DANSCQIIIPQNQVNRKSDIYVCM 336

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 181/384 (47%), Gaps = 58/384 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PD 379
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K  +
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312

Query: 380 LSNFLVIFPPRCKID---SWYFCL 400
            +N   I  P+ +++     Y C+
Sbjct: 313 DANSCQIIIPQNQVNRKSDIYVCM 336

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 151/318 (47%), Gaps = 38/318 (11%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   +S++ + DL    N    P +
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPA 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V ++L +  + YL+FK 
Sbjct: 65  SM-------------------GRGRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYLDFKV 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
            + +F+     K+  VP + A       +GL EK +  +F   V         +EN+ R 
Sbjct: 105 TEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANF------DENDPRT 157

Query: 202 SE--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            E  +   +   E   K  L   +     +A+A+   D  + +   +T   INR+ LY+ 
Sbjct: 158 FEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET---INRIKLYSE 214

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  ++    +G   GV+ 
Sbjct: 215 SLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVK- 269

Query: 320 ASGQDILSHKLVLDPSFT 337
           + G+     +L+ DPS+ 
Sbjct: 270 SEGEIARCKQLICDPSYV 287

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Sus scrofa (taxid: 9823)

>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 180/384 (46%), Gaps = 58/384 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPEAMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFIYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +   +   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PD 379
            G+     +L+ DPS+ +P  +  +                 G+V R ICI    +K  +
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTN 312

Query: 380 LSNFLVIFPPRCKID---SWYFCL 400
            +N   I  P+ +++     Y C+
Sbjct: 313 DANSCQIIIPQNQVNRKSDIYVCM 336

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Canis familiaris (taxid: 9615)

>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 52/368 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V    + DE++       
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA---NFDENDPKTFEGV 161

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
           +    S   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ 
Sbjct: 162 DPQTTS-MRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLA 217

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ + G
Sbjct: 218 RYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEG 272

Query: 323 QDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDL 380
           +     +L+ DPS+ +P  +  +                 G+V R ICI    +K   D 
Sbjct: 273 EVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTNDA 314

Query: 381 SNFLVIFP 388
           ++  +I P
Sbjct: 315 NSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 173/368 (47%), Gaps = 52/368 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V    + DE++       
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA---NFDENDPKTFEGV 161

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
           +    S   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ 
Sbjct: 162 DPQTTS-MRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLA 217

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ + G
Sbjct: 218 RYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEG 272

Query: 323 QDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDL 380
           +     +L+ DPS+ +P  +  +                 G+V R ICI    +K   D 
Sbjct: 273 EVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTNDA 314

Query: 381 SNFLVIFP 388
           ++  +I P
Sbjct: 315 NSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pongo pygmaeus (taxid: 9600)

>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 179/382 (46%), Gaps = 54/382 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V    + DE++       
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVA---NFDENDPKTFEGV 161

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
           +    S   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S+ 
Sbjct: 162 DPQTTS-MRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSESLA 217

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ + G
Sbjct: 218 RYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEG 272

Query: 323 QDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PDLS 381
           +     +L+ DPS+ +P  +  +                 G+V R ICI    +K  + +
Sbjct: 273 EVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTNDA 314

Query: 382 NFLVIFPPRCKID---SWYFCL 400
           N   I  P+ +++     Y C+
Sbjct: 315 NSCQIIIPQNQVNRKSDIYVCM 336

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q5RCE1|GDIB_PONAB Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 151/318 (47%), Gaps = 38/318 (11%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG    S SI  L      +  P S 
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGE--SASITPLEDLYKRYKIPGS- 61

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ +                  R++N+D+  P+ L      V ++L +  + YL+FK  
Sbjct: 62  PPESM---------------GRGRDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVT 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP + A       +GL EK +  +F   V    + DE +       
Sbjct: 106 EGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVA---NFDEKDPRTF--- 158

Query: 203 EEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            E +D   +   +   K  L   +     +A+A+   D  + +   +T   INR+ LY+ 
Sbjct: 159 -EGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYET---INRIKLYSE 214

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  ++    +G   GV+ 
Sbjct: 215 SLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV--QNGKVIGVK- 269

Query: 320 ASGQDILSHKLVLDPSFT 337
           + G+     +L+ DPS+ 
Sbjct: 270 SEGEIARCKQLICDPSYV 287

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
224113201	553	predicted protein [Populus trichocarpa]	0.928	0.683	0.658	1e-142
359476981	556	PREDICTED: rab proteins geranylgeranyltr	0.928	0.679	0.664	1e-142
255561411	551	protein with unknown function [Ricinus c	0.921	0.680	0.641	1e-135
147798203	812	hypothetical protein VITISV_019372 [Viti	0.928	0.465	0.569	1e-131
357484143	552	Rab proteins geranylgeranyltransferase c	0.911	0.672	0.59	1e-128
356496561	553	PREDICTED: rab proteins geranylgeranyltr	0.914	0.672	0.615	1e-127
356538383	551	PREDICTED: rab proteins geranylgeranyltr	0.914	0.675	0.611	1e-127
388517443	552	unknown [Medicago truncatula]	0.911	0.672	0.587	1e-127
22330883	563	Rab escort protein [Arabidopsis thaliana	0.931	0.673	0.592	1e-127
20453227	563	AT3g06540/F5E6_13 [Arabidopsis thaliana]	0.931	0.673	0.592	1e-127

>gi|224113201|ref|XP_002332635.1| predicted protein [Populus trichocarpa] gi|222832862|gb|EEE71339.1| predicted protein [Populus trichocarpa]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/401 (65%), Positives = 315/401 (78%), Gaps = 23/401 (5%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           PPYP IEPT FDLI +GTGL E +++AAASASGK+VLHLD NPFYGSH+SSLS+ +LT F
Sbjct: 5   PPYPQIEPTTFDLIAVGTGLAECIVAAAASASGKTVLHLDTNPFYGSHYSSLSVPELTSF 64

Query: 73  LNSHSTPSSV---------CPD---------PLYSDVEISNYASRLLSQHPRNFNLDVSG 114
           L S+ST SS           PD         P+YSDVEIS +   L+ ++ R FNLD+ G
Sbjct: 65  LISNSTASSPPSSTSTTTDIPDYSIVNLITQPVYSDVEISCFYPELIEENLRKFNLDLCG 124

Query: 115 PRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLME 174
           PRVLFCAD ++DLMLKSGAS+Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LME
Sbjct: 125 PRVLFCADKSIDLMLKSGASNYVEFKSIDASFVGDGNGKLWNVPDSRAAIFKDKSLTLME 184

Query: 175 KNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           KNQLMRFFKLVQGHL  ++       ++IS+EDL  PF E+L+KM+LP KI+SI+LYAIA
Sbjct: 185 KNQLMRFFKLVQGHLVATVGAGTSGKMKISDEDLQRPFVEYLSKMRLPPKIRSIILYAIA 244

Query: 233 MADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA 289
           MADYDQ+   V + +LKT+DGI+RLALY SS+GRF NA GALIYPIYGQGELPQAF RR+
Sbjct: 245 MADYDQDDMGVCQNLLKTKDGIDRLALYQSSVGRFTNASGALIYPIYGQGELPQAFSRRS 304

Query: 290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL 349
           AVKGC++VLRMPV +LL +++SGSYKGVRLASGQDI S KLVLDPSFT+    AS    L
Sbjct: 305 AVKGCIHVLRMPVTALLMEKDSGSYKGVRLASGQDIFSQKLVLDPSFTLASPSASPSDLL 364

Query: 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390
            ESF   S  D KGKVARGICITR+SLKPD+SN LV++PPR
Sbjct: 365 HESFNFLSTRDVKGKVARGICITRNSLKPDMSNLLVVYPPR 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476981|ref|XP_002273131.2| PREDICTED: rab proteins geranylgeranyltransferase component A 2-like [Vitis vinifera] gi|296088658|emb|CBI37649.3| unnamed protein product [Vitis vinifera]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 269/405 (66%), Positives = 317/405 (78%), Gaps = 27/405 (6%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  + +H R FNLD
Sbjct: 64  FLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPV-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS++LY
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSMILY 242

Query: 230 AIAMADYDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAMADYDQ   EV + VL T+ GI+RLALY+SS+GRF NALGALIYPIYGQGEL QAFC
Sbjct: 243 AIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGALIYPIYGQGELTQAFC 302

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSH 346
           RRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP  +A S 
Sbjct: 303 RRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPVPVAPSQ 362

Query: 347 QQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390
              + ES Q  +L D K KVARGICI +SSLKPD+SNF+ ++PPR
Sbjct: 363 PDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPR 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561411|ref|XP_002521716.1| protein with unknown function [Ricinus communis] gi|223539107|gb|EEF40703.1| protein with unknown function [Ricinus communis]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/402 (64%), Positives = 316/402 (78%), Gaps = 27/402 (6%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           P YP I+PT FDLI+IGTGL ES+I+AAASASGKSVLH+D N FYGSHFSSLSI DLT F
Sbjct: 5   PSYPSIDPTTFDLILIGTGLSESIIAAAASASGKSVLHIDQNKFYGSHFSSLSIPDLTSF 64

Query: 73  LNSHS----------------TPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPR 116
           LNS+S                T  ++    LYS+VEIS++++ L+ Q+   F+LD+SGPR
Sbjct: 65  LNSNSVPTPSPPPPQTPHPDFTVVNLTTQSLYSNVEISSFSNELIEQNCSKFSLDISGPR 124

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
           VL+CAD+++DLM+K+GA+ Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LMEKN
Sbjct: 125 VLYCADNSIDLMIKTGANQYVEFKSIDASFVGDENGKLWNVPDSRAAIFKDKSLSLMEKN 184

Query: 177 QLMRFFKLVQGHLSLDESEEN----NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           +LMRFFKLVQ  ++ +E++E     +VRISE+DL+SPF +FL KMKL  KIKSI+LYAI 
Sbjct: 185 RLMRFFKLVQSQIATNENQEQQEEEDVRISEQDLESPFVDFLNKMKLSSKIKSIILYAIV 244

Query: 233 MADYDQE----VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRR 288
           MAD DQE     ++ +LKT+DGI+RLALY SSIGRF NALGA IYPIYGQGELP AFCRR
Sbjct: 245 MADCDQENTGGANKDLLKTKDGIDRLALYQSSIGRFTNALGAFIYPIYGQGELPPAFCRR 304

Query: 289 AAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQ 348
           AAVKGC+YVLRMPV++LL D+N+G+YKG+RLASGQ+I S KLVLDPSFTVP   +S    
Sbjct: 305 AAVKGCIYVLRMPVVALLMDKNNGNYKGIRLASGQEIYSQKLVLDPSFTVP---SSPSDP 361

Query: 349 LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390
           L ESF   S+ D K KVAR ICIT+ SLKPD SNFL ++PPR
Sbjct: 362 LHESFCFLSVRDVKQKVARAICITKCSLKPDTSNFLAVYPPR 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798203|emb|CAN62777.1| hypothetical protein VITISV_019372 [Vitis vinifera]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/471 (56%), Positives = 316/471 (67%), Gaps = 93/471 (19%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  L +H R FNLD
Sbjct: 64  FLTSQSAVYSSHPNPPSSVTADAAEYVALDLKTRPMYSDVEITSHSSDPL-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKS---- 225
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS    
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSYRSH 242

Query: 226 ----------------------------IVLYAIAMADYDQ---EVSEYVLKTRDGINRL 254
                                       ++LYAIAMADYDQ   EV + VL T+ GI+RL
Sbjct: 243 RPSLSFYANSLLGMYKMQLKTMRDVSLKMILYAIAMADYDQDSIEVCKDVLDTKIGIDRL 302

Query: 255 ALYNSSIG----------------------------------RFQNALGALIYPIYGQGE 280
           ALY+SS+G                                  +F NALGALIYPIYGQGE
Sbjct: 303 ALYHSSVGSQGRRQVCVDVGFDXGGFFGLIFKVHLYKSQNIRKFPNALGALIYPIYGQGE 362

Query: 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPG 340
           L QAFCRRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP 
Sbjct: 363 LTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPV 422

Query: 341 SLASSHQQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390
            +A S    + ES Q  +L   K KVARGICI +SSLKPD+SNF+ ++PPR
Sbjct: 423 PVAPSQPDCMPESSQVINLVYAKQKVARGICIMKSSLKPDVSNFVFVYPPR 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484143|ref|XP_003612358.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula] gi|355513693|gb|AES95316.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/400 (59%), Positives = 297/400 (74%), Gaps = 29/400 (7%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK IDA+ + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPR
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPR 402

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496561|ref|XP_003517135.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/398 (61%), Positives = 299/398 (75%), Gaps = 26/398 (6%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L 
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLT 69

Query: 75  S-HSTPS----------------SVCPDPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPR 116
           S HS PS                 +   PL +D E + Y  S  LS++ R FN+D+ GPR
Sbjct: 70  SPHSLPSAATAAASSDSDDIVVVDLVHQPLCTDAETATYDESAFLSENSRKFNIDLGGPR 129

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
            LFCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR AIF+DK L L EKN
Sbjct: 130 ALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGAIFRDKKLSLKEKN 189

Query: 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236
           QLMRFFKLVQ HL  D+++E   +I +EDL+ PF  FL KMKLP KIKSI+LYAIAM DY
Sbjct: 190 QLMRFFKLVQQHL--DDTQEE--KIPKEDLEIPFVSFLEKMKLPPKIKSILLYAIAMLDY 245

Query: 237 DQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG 293
           DQ   EV E +LKT+DGI+ LA Y+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKG
Sbjct: 246 DQDNNEVCEELLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKG 305

Query: 294 CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QES 352
           C+YVLRMPV+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSFT+P  L+ S      E 
Sbjct: 306 CIYVLRMPVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSLGDFPSER 365

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390
            Q  S  D KG VARGICITRSS+KPD+S+  V++PPR
Sbjct: 366 LQMLSQRDIKGMVARGICITRSSIKPDVSSCSVVYPPR 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538383|ref|XP_003537683.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/396 (61%), Positives = 300/396 (75%), Gaps = 24/396 (6%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L+
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLS 69

Query: 75  S-HSTPSSVCP--------------DPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPRVL 118
           S HS PS+                  PL SD EI+ Y  S  LS++ R F++D+ GP+ L
Sbjct: 70  SPHSLPSAAATTTDSDDVVVIDFVQQPLCSDAEIATYDESAFLSENSRKFSIDLGGPKAL 129

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
           FCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR +IF+DK L L EKNQL
Sbjct: 130 FCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGSIFRDKKLSLKEKNQL 189

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQ 238
           MRFFKLVQ HL  D+++E   +I EEDL+  F  FL KMKLP KIKSI+LYAIAM DYDQ
Sbjct: 190 MRFFKLVQQHL--DDTQEE--KIPEEDLEIAFVSFLEKMKLPPKIKSILLYAIAMLDYDQ 245

Query: 239 EVSEY---VLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
           + +E    +LKT+DGI+ LALY+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKGC+
Sbjct: 246 DNNEVCIELLKTKDGIDSLALYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCI 305

Query: 296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QESFQ 354
           YVLRM V+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSF +P  L+SS +    E  Q
Sbjct: 306 YVLRMSVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFMIPSPLSSSPRDFPSEKLQ 365

Query: 355 AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390
                D KG VARGICITRSS+KPD+SN  V++PPR
Sbjct: 366 MLGQRDIKGMVARGICITRSSIKPDVSNCSVVYPPR 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517443|gb|AFK46783.1| unknown [Medicago truncatula]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/400 (58%), Positives = 296/400 (74%), Gaps = 29/400 (7%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK ID + + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDVSLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPR
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPR 402

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330883|ref|NP_187306.2| Rab escort protein [Arabidopsis thaliana] gi|51317418|gb|AAN03631.2|AF409086_1 Rab escort protein [Arabidopsis thaliana] gi|332640889|gb|AEE74410.1| Rab escort protein [Arabidopsis thaliana]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/407 (59%), Positives = 314/407 (77%), Gaps = 28/407 (6%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
           +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DLT 
Sbjct: 4   IPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTS 63

Query: 72  FLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFNLD 111
           FL+S+S                        +    LYS VEIS++ S +L +H R FN+D
Sbjct: 64  FLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFNVD 123

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           ++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKSL 
Sbjct: 124 LAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKSLT 183

Query: 172 LMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+LY
Sbjct: 184 LLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSIILY 243

Query: 230 AIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQAFC
Sbjct: 244 AIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQAFC 303

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLASS 345
           RRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+S 
Sbjct: 304 RRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLSSL 363

Query: 346 HQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPR 390
             Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+
Sbjct: 364 TDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPK 410

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20453227|gb|AAM19852.1| AT3g06540/F5E6_13 [Arabidopsis thaliana] gi|23463085|gb|AAN33212.1| At3g06540/F5E6_13 [Arabidopsis thaliana]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/407 (59%), Positives = 314/407 (77%), Gaps = 28/407 (6%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
           +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DLT 
Sbjct: 4   IPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTS 63

Query: 72  FLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFNLD 111
           FL+S+S                        +    LYS VEIS++ S +L +H R FN+D
Sbjct: 64  FLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFNVD 123

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           ++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKSL 
Sbjct: 124 LAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKSLT 183

Query: 172 LMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+LY
Sbjct: 184 LLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSIILY 243

Query: 230 AIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQAFC
Sbjct: 244 AIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQAFC 303

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLASS 345
           RRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+S 
Sbjct: 304 RRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLSSL 363

Query: 346 HQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPR 390
             Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+
Sbjct: 364 TDQQNETLNVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPK 410

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
TAIR|locus:2084289	563	REP "AT3G06540" [Arabidopsis t	0.746	0.539	0.621	9.4e-122
FB|FBgn0026378	511	Rep "Rab escort protein" [Dros	0.729	0.581	0.337	1.6e-38
UNIPROTKB|E2RKG1	652	CHM "Uncharacterized protein"	0.555	0.346	0.329	2.7e-38
MGI|MGI:101913	621	Chml "choroideremia-like" [Mus	0.552	0.362	0.325	5.3e-38
UNIPROTKB|P24386	653	CHM "Rab proteins geranylgeran	0.557	0.347	0.326	1.2e-37
UNIPROTKB|K7GR66	653	CHM "Uncharacterized protein"	0.503	0.313	0.330	3.4e-37
MGI|MGI:892979	665	Chm "choroidermia" [Mus muscul	0.503	0.308	0.334	1.1e-36
DICTYBASE|DDB_G0280143	661	DDB_G0280143 "Rab escort prote	0.609	0.375	0.302	1.8e-36
UNIPROTKB|F1N2I0	651	CHML "Uncharacterized protein"	0.557	0.348	0.314	9.1e-35
RGD|2340	650	Chm "choroideremia (Rab escort	0.557	0.349	0.318	2.1e-34

TAIR|locus:2084289 REP "AT3G06540" [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
 Identities = 194/312 (62%), Positives = 252/312 (80%)

Query:    87 LYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATF 146
             LYS VEIS++ S +L +H R FN+D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F
Sbjct:    99 LYSSVEISSFESEILEEHSRRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASF 158

Query:   147 MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEE 204
             + D+  +L +VPDSRAAIFKDKSL L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEE
Sbjct:   159 VGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEE 218

Query:   205 DLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSI 261
             D++SPF +FL+KM+LP KIKSI+LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+
Sbjct:   219 DMESPFVDFLSKMRLPPKIKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSM 278

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
             GRF NALGALIYPIYGQGELPQAFCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLAS
Sbjct:   279 GRFSNALGALIYPIYGQGELPQAFCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLAS 338

Query:   322 GQDILSHKLVLDPSFTVP-GSLASSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKP 378
             GQ+I S KL+LDP  TV   SL+S   Q  E+          NK K+ARG+C+ R S+K 
Sbjct:   339 GQEIFSQKLILDPCVTVGLESLSSLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKA 398

Query:   379 DLSNFLVIFPPR 390
             ++SN LV++PP+
Sbjct:   399 NVSNALVVYPPK 410

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:2000541 "positive regulation of protein geranylgeranylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

FB|FBgn0026378 Rep "Rab escort protein" [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 109/323 (33%), Positives = 167/323 (51%)

Query:    23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
             FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P S 
Sbjct:     9 FDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSA 68

Query:    83 CPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGAS 134
               +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS   
Sbjct:    69 LRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKSNIC 127

Query:   135 HYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
              Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F      +   D+ 
Sbjct:   128 RYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDY-GEDKC 185

Query:   195 EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254
              E+++    E     F E+L   ++  KI S V+ AIAM        E       G+ R 
Sbjct:   186 NEDSL----EFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GMQRT 234

Query:   255 ALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY 314
               +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS  +
Sbjct:   235 QRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEF 292

Query:   315 KGVRLASGQDILSHKLVLDPSFT 337
               +  ++G+ + +  +V  P +T
Sbjct:   293 --LLSSAGKTLRAKNVVSAPGYT 313

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS;NAS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000922 "spindle pole" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=ISS

GO:0005818 "aster" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=NAS

UNIPROTKB|E2RKG1 CHM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 287 (106.1 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
 Identities = 81/246 (32%), Positives = 124/246 (50%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   233 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 291

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   292 RMLMKFLTFCMEY----EKHPDEYKAYEE---ITFSEYLKTQKLTPNLQYFVLHSIAMT- 343

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   344 -----SETASNTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 396

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILS-HKLVLDPSFTVPGSLASSHQQLQESFQ 354
             Y LR  V  L+ D+ S   K +    GQ I+S H LV D  F+       SH Q ++  +
Sbjct:   397 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISKHFLVEDSYFS---ENTCSHVQYRQISR 453

Query:   355 AFSLSD 360
             +  ++D
Sbjct:   454 SVLITD 459

GO:0001568 "blood vessel development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

MGI|MGI:101913 Chml "choroideremia-like" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 5.3e-38, Sum P(2) = 5.3e-38
 Identities = 79/243 (32%), Positives = 127/243 (52%)

Query:   118 LFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177
             L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K L ++EK  
Sbjct:   237 LYSQGSLIDLLIKSNVSRYAEFKNV-TRILAFWEGKVEQVPCSRADVFNSKELSMVEKRM 295

Query:   178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237
             LM+F         LD  + ++    ++     F+++L   KL   ++  +L++IAM    
Sbjct:   296 LMKFLTFC-----LDYEQHSDEY--QDFKQCSFSDYLKTKKLTPNLQHFILHSIAMT--- 345

Query:   238 QEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYV 297
                SE    T DG+     +   +GRF N     I+P+YG GE+PQ FCR  AV G +Y 
Sbjct:   346 ---SESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHGEIPQCFCRMCAVFGGVYC 400

Query:   298 LRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFS 357
             LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P    S+ Q  Q S +A  
Sbjct:   401 LRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LPKETCSNVQYKQIS-RAVL 458

Query:   358 LSD 360
             ++D
Sbjct:   459 ITD 461

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|P24386 CHM "Rab proteins geranylgeranyltransferase component A 1" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
 Identities = 80/245 (32%), Positives = 125/245 (51%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F E+L   KL   ++ IV+++IAM  
Sbjct:   293 RMLMKFLTFCMEY----EKYPDEYKGYEE---ITFYEYLKTQKLTPNLQYIVMHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S  Q  Q S +A
Sbjct:   398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSRVQYRQIS-RA 455

Query:   356 FSLSD 360
               ++D
Sbjct:   456 VLITD 460

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=TAS

UNIPROTKB|K7GR66 CHM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
 Identities = 73/221 (33%), Positives = 114/221 (51%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   293 RMLMKFLTFCMDY----EEYPDEYKAYEE---ISFSEYLKTQKLTPNLQYFVLHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATQNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
             Y LR  V  L+ D+ SG  K +    GQ I++   +++ S+
Sbjct:   398 YCLRHSVQCLVVDKESGKCKAIIDHFGQRIIAKHFIVEDSY 438

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

MGI|MGI:892979 Chm "choroidermia" [Mus musculus (taxid:10090)]

 Score = 284 (105.0 bits), Expect = 1.1e-36, Sum P(2) = 1.1e-36
 Identities = 74/221 (33%), Positives = 113/221 (51%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   246 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 304

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE   + F+E+L   KL   ++  VL++IAM  
Sbjct:   305 RMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQYFVLHSIAMT- 356

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   357 -----SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 409

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
             Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+
Sbjct:   410 YCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSY 450

GO:0001568 "blood vessel development" evidence=IMP

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

DICTYBASE|DDB_G0280143 DDB_G0280143 "Rab escort protein (REP)" [Dictyostelium discoideum (taxid:44689)]

 Score = 307 (113.1 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
 Identities = 81/268 (30%), Positives = 141/268 (52%)

Query:    91 VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
             +++   + + L +  R F++D+S P +L+     V L++ S AS YLEFKS+D  ++   
Sbjct:   162 IDVPLVSDKSLEELGRLFSIDIS-PTLLYGRGALVKLLISSSASRYLEFKSLDQNYLF-T 219

Query:   151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV-----QGHLSLDESE-ENNVRISEE 204
             + K+  +P ++ +IFKD +  L EK  +M+F + +     +G   LD++E E + ++S  
Sbjct:   220 NGKVHEIPSTKGSIFKDSTFSLKEKRLIMKFMESIRELKKEGS-DLDDAEKEAHFKLSII 278

Query:   205 DLDSPFAEFLT---KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSI 261
             +L   F  F+      K    ++S +LY +++   D E     L+T  GI  + LY SS+
Sbjct:   279 ELGKQFKSFIDYIKSFKFTQLVESFILYGLSLIHEDLE--SIPLET--GIESVFLYTSSL 334

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
               +   +   + P YG G++PQAFCR  AV G  YVL   V S+  +Q +G  K +  + 
Sbjct:   335 LVY--GVSPFLIPYYGVGDIPQAFCRLCAVFGGSYVLGRTVDSIQFNQETGKVKSIICSE 392

Query:   322 GQDILSHKLVLDPSFTVPGSLASSHQQL 349
             GQ I +   +  P +    +++SS   L
Sbjct:   393 GQTIQTTHFITSPKYL--NTISSSQNNL 418

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0018344 "protein geranylgeranylation" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

UNIPROTKB|F1N2I0 CHML "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 277 (102.6 bits), Expect = 9.1e-35, Sum P(2) = 9.1e-35
 Identities = 77/245 (31%), Positives = 124/245 (50%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K L ++EK
Sbjct:   231 KLLYSQGLLIDLLIKSNVSRYAEFKNV-TRILAFREGKVEQVPCSRADVFNSKELTMVEK 289

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F       L  ++  E     ++      F+E+L    L   ++  +L++IAM  
Sbjct:   290 RMLMKFLTFC---LDYEQHPEEYQAFTQ----CSFSEYLKTKNLTPSLQHFILHSIAM-- 340

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                 +SE    T DG+     +   +GRF N     ++P+YGQGE+PQ FCR  AV G +
Sbjct:   341 ----MSESSCTTVDGLKATKTFLQCLGRFGNT--PFLFPLYGQGEIPQCFCRMCAVFGGI 394

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ SG  K +    GQ I +   +++ S+ +     SS Q  Q S +A
Sbjct:   395 YCLRHKVQCLVVDRESGRCKAIIDHLGQRINAKYFIVEDSY-LSEETCSSVQYKQIS-RA 452

Query:   356 FSLSD 360
               ++D
Sbjct:   453 VLITD 457

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

RGD|2340 Chm "choroideremia (Rab escort protein 1)" [Rattus norvegicus (taxid:10116)]

 Score = 278 (102.9 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 78/245 (31%), Positives = 122/245 (49%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   231 QLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 289

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  R  E    + F+E+L   KL   ++  VL++IAM  
Sbjct:   290 RMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQYFVLHSIAMT- 341

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   342 -----SETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 394

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    +   S  Q ++  +A
Sbjct:   395 YCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC--SRVQYRQISRA 452

Query:   356 FSLSD 360
               ++D
Sbjct:   453 VLITD 457

GO:0001568 "blood vessel development" evidence=IEA;ISO

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.256.25.1 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	407
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	3e-56
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	2e-48
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	6e-46

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  190 bits (485), Expect = 3e-56
 Identities = 98/354 (27%), Positives = 158/354 (44%), Gaps = 59/354 (16%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL-THFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S  GK VLH+D N +YG   +SLS+  L   F      P S
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEEKPPS 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V L++ +  + YLEFK+
Sbjct: 65  K-------------LGRS------RDWNVDLI-PKFLMANGELVKLLIHTDVTRYLEFKA 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
           ++ +++     K+  VP +         +G+ EK +  +F   VQ     DE +      
Sbjct: 105 VEGSYVYK-GGKIHKVPANEMEALSSPLMGIFEKRRFRKFLTYVQ---DYDEDDPK---- 156

Query: 202 SEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258
           + + LD       E   K  L       + +A+A+   D  +++        + R+ LY+
Sbjct: 157 THDGLDPRKRTMLEVYKKFGLDENTIDFIGHALALYRDDDYLNQ---PALPTVERIKLYS 213

Query: 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318
            S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ D+N G   GV+
Sbjct: 214 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDEIVYDEN-GKVVGVK 270

Query: 319 LASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICI 371
             SG ++   K V+ DPS+  P  +                    G+V R ICI
Sbjct: 271 --SGGEVARAKQVICDPSYF-PDKVRK-----------------VGQVIRAICI 304

Length = 439

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  169 bits (430), Expect = 2e-48
 Identities = 104/378 (27%), Positives = 161/378 (42%), Gaps = 60/378 (15%)

Query: 17  PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
             E T +D+I++GTGL ES++SAA S  GK+VLH+D N +YGS  +SL++  L  + +  
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFD-- 58

Query: 77  STPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHY 136
                  P     D               R+ N+D+  P+ LF     + +++++G + Y
Sbjct: 59  --ECEKRPSKGGGD---------------RDLNIDLI-PKFLFANSELLKILIETGVTEY 100

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEE 196
           LEFK I  +F+     K+  VP + A IF    L L EK ++MRF K V  +       E
Sbjct: 101 LEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNY------AE 153

Query: 197 NNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLA 255
               + E        EFL  K  L    +  + + IA++  D ++       R+ + R+ 
Sbjct: 154 QKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLDI-----PAREALERIL 207

Query: 256 LYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP-VISLLTDQNSGSY 314
            Y  S G +  +    +YP YG GEL Q F R +AV G  Y+L         T       
Sbjct: 208 RYMRSFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKDVETVD 265

Query: 315 KGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRS 374
           KG          + K++  P++       S                   ++ R ICI   
Sbjct: 266 KG-----SLTQKAGKIISSPTY---FREDSKSVGQFY------------RIIRAICILLV 305

Query: 375 SLKP---DLSNFLVIFPP 389
              P    L +  +IFPP
Sbjct: 306 HPVPFTTGLDSLQIIFPP 323

Length = 434

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  163 bits (415), Expect = 6e-46
 Identities = 100/351 (28%), Positives = 164/351 (46%), Gaps = 52/351 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV GTGL E ++S   S +GK VLH+D NP+YG   +SL++  L        TP   
Sbjct: 5   YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP--- 61

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  +               R++N+D+  P+ +  +   V ++L +  + YLEFK I
Sbjct: 62  -PESLGRN---------------RDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           D +++   + K+  VP +         +G  EKN+   F + V  +      +EN+    
Sbjct: 105 DGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNY------DENDPETH 158

Query: 203 EE-DLDS-PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           +  +L +   A+   K  L       V +A+A+   D  +++  ++T   + R+ LY  S
Sbjct: 159 KGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIET---VMRIKLYMDS 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    IYP+YG G LPQAF R  A+ G  Y+L  PV  ++ D+N G   GV+  
Sbjct: 216 LSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSE 272

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICI 371
            G+      ++ DPS+  P  +                    GKV R ICI
Sbjct: 273 GGEVAKCKLVICDPSY-FPDKVKK-----------------VGKVIRCICI 305

Length = 443

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	407
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.96
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.96
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.95
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.95
PLN02576	496	protoporphyrinogen oxidase	99.95
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.95
PRK07233	434	hypothetical protein; Provisional	99.95
PLN02268	435	probable polyamine oxidase	99.95
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.94
PRK07208	479	hypothetical protein; Provisional	99.94
PLN02529	738	lysine-specific histone demethylase 1	99.94
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.94
PLN02612	567	phytoene desaturase	99.94
PLN02676	487	polyamine oxidase	99.94
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.94
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.94
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.92
PLN02568	539	polyamine oxidase	99.92
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.92
PLN02487	569	zeta-carotene desaturase	99.92
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.92
PLN03000	881	amine oxidase	99.91
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.91
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.88
PLN02976	1713	amine oxidase	99.88
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.85
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.78
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.77
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.77
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.75
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.7
COG3349	485	Uncharacterized conserved protein [Function unknow	99.56
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.47
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.41
COG2081	408	Predicted flavoproteins [General function predicti	99.36
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.3
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.22
COG0579	429	Predicted dehydrogenase [General function predicti	99.19
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.18
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.14
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.11
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.04
PRK08274	466	tricarballylate dehydrogenase; Validated	99.02
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.99
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.98
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.98
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.97
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.96
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.93
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.89
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.87
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.86
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.85
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.85
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.82
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.8
PRK05257	494	malate:quinone oxidoreductase; Validated	98.79
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.77
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.72
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.72
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.7
PRK10157	428	putative oxidoreductase FixC; Provisional	98.66
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.63
PRK10015	429	oxidoreductase; Provisional	98.62
PRK07121	492	hypothetical protein; Validated	98.59
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.58
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.55
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.54
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.54
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.53
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.52
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.51
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.51
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.51
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.5
PTZ00058	561	glutathione reductase; Provisional	98.49
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.49
PRK06370	463	mercuric reductase; Validated	98.48
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.48
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.47
PLN02463	447	lycopene beta cyclase	98.46
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.46
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.46
PRK06116	450	glutathione reductase; Validated	98.46
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.45
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.45
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.45
PRK08013	400	oxidoreductase; Provisional	98.44
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.43
PRK09126	392	hypothetical protein; Provisional	98.43
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.42
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.42
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.42
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.41
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.41
PRK07045	388	putative monooxygenase; Reviewed	98.4
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.4
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.4
PLN02661	357	Putative thiazole synthesis	98.39
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.39
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.39
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.38
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.38
PRK06184	502	hypothetical protein; Provisional	98.37
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.37
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.37
PRK07236	386	hypothetical protein; Provisional	98.37
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.36
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.36
PRK12831	464	putative oxidoreductase; Provisional	98.36
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.35
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.35
PRK08163	396	salicylate hydroxylase; Provisional	98.34
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.34
COG3573	552	Predicted oxidoreductase [General function predict	98.34
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.34
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.34
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.34
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.33
PRK14694	468	putative mercuric reductase; Provisional	98.32
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.32
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.32
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.32
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.31
PLN02985	514	squalene monooxygenase	98.31
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.31
PRK13748	561	putative mercuric reductase; Provisional	98.3
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.3
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.3
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.29
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.29
PRK06834	488	hypothetical protein; Provisional	98.28
PLN02697	529	lycopene epsilon cyclase	98.28
PRK14727	479	putative mercuric reductase; Provisional	98.28
PRK06185	407	hypothetical protein; Provisional	98.27
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.27
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.27
TIGR02053	463	MerA mercuric reductase. This model represents the	98.27
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.26
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.26
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.26
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.26
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.25
PRK06847	375	hypothetical protein; Provisional	98.25
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.25
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.25
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.24
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.24
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.24
PTZ00367	567	squalene epoxidase; Provisional	98.24
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.24
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.24
PRK07190	487	hypothetical protein; Provisional	98.23
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.23
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.23
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.22
PTZ00052	499	thioredoxin reductase; Provisional	98.21
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.21
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.21
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.21
PRK12839	572	hypothetical protein; Provisional	98.21
PRK11445	351	putative oxidoreductase; Provisional	98.2
PRK06753	373	hypothetical protein; Provisional	98.2
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.2
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.2
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.19
PRK07804	541	L-aspartate oxidase; Provisional	98.19
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.19
PRK06126	545	hypothetical protein; Provisional	98.19
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.18
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.18
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.18
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.18
PLN02507	499	glutathione reductase	98.17
PRK08244	493	hypothetical protein; Provisional	98.17
PRK07395	553	L-aspartate oxidase; Provisional	98.16
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.16
PRK07538	413	hypothetical protein; Provisional	98.15
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.15
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.15
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.15
PRK06175	433	L-aspartate oxidase; Provisional	98.14
PLN02815	594	L-aspartate oxidase	98.14
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.14
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.14
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.13
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.13
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.13
PRK02106	560	choline dehydrogenase; Validated	98.13
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.12
PRK07588	391	hypothetical protein; Provisional	98.12
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.12
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.11
PRK10262	321	thioredoxin reductase; Provisional	98.11
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.11
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.1
PLN02546	558	glutathione reductase	98.1
PRK05868	372	hypothetical protein; Validated	98.1
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.09
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.09
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.08
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.08
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.08
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.07
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.07
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.07
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.06
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.06
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.06
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.06
PLN02852	491	ferredoxin-NADP+ reductase	98.05
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.05
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.04
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.03
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.03
PRK06475	400	salicylate hydroxylase; Provisional	98.03
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.03
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.03
PRK08071	510	L-aspartate oxidase; Provisional	98.03
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.01
PRK08294	634	phenol 2-monooxygenase; Provisional	98.01
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.01
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.0
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.99
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.99
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.99
PRK08401	466	L-aspartate oxidase; Provisional	97.98
PRK06996	398	hypothetical protein; Provisional	97.98
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.96
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.96
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.96
PRK08275	554	putative oxidoreductase; Provisional	97.95
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.95
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.95
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.95
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.93
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.92
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.92
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.91
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.9
PRK09077	536	L-aspartate oxidase; Provisional	97.9
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.84
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.82
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.82
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.78
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.77
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.74
PTZ00188	506	adrenodoxin reductase; Provisional	97.72
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.71
PRK13984	604	putative oxidoreductase; Provisional	97.7
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.7
PRK07512	513	L-aspartate oxidase; Provisional	97.69
PLN02785	587	Protein HOTHEAD	97.69
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.69
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.68
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.67
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.66
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.65
PRK07846	451	mycothione reductase; Reviewed	97.64
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.63
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.61
KOG2853	509	consensus Possible oxidoreductase [General functio	97.6
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.56
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.48
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.4
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.39
PRK09897	534	hypothetical protein; Provisional	97.3
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.25
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.2
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.15
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.15
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.06
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.05
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.02
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.01
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.95
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.92
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.92
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.87
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.68
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.48
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.48
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	96.46
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.37
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.35
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.33
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.25
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.2
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.13
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.05
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	96.04
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.84
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.83
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.83
KOG2852	380	consensus Possible oxidoreductase [General functio	95.74
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.67
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.65
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.61
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.59
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	95.58
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.47
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.44
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.37
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.36
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.27
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.25
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.25
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.21
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.2
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.19
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.07
TIGR02053	463	MerA mercuric reductase. This model represents the	95.06
PRK06370	463	mercuric reductase; Validated	95.01
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.99
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	94.97
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.89
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	94.88
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.85
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.84
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.83
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	94.81
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.81
PRK07846	451	mycothione reductase; Reviewed	94.8
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	94.8
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.74
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.66
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.65
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.65
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.64
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.64
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.59
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	94.52
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.51
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.45
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.39
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	94.38
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.23
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.17
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.13
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.11
PRK04148	134	hypothetical protein; Provisional	94.04
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.0
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.99
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.99
PRK09564	444	coenzyme A disulfide reductase; Reviewed	93.98
PRK10262	321	thioredoxin reductase; Provisional	93.84
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.84
PRK14989	847	nitrite reductase subunit NirD; Provisional	93.78
PTZ00153	659	lipoamide dehydrogenase; Provisional	93.78
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	93.76
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	93.74
PTZ00058	561	glutathione reductase; Provisional	93.74
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.7
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.63
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.56
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	93.55
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.46
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.44
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.43
PLN02507	499	glutathione reductase	93.41
PRK12831	464	putative oxidoreductase; Provisional	93.41
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	93.39
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.39
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.37
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.36
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.32
PRK06116	450	glutathione reductase; Validated	93.28
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.27
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.22
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.13
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	93.07
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	93.03
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	93.02
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.99
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.98
PLN02546	558	glutathione reductase	92.97
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.96
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.95
PRK13748	561	putative mercuric reductase; Provisional	92.85
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	92.79
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	92.77
PRK14694	468	putative mercuric reductase; Provisional	92.7
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.65
PRK14727	479	putative mercuric reductase; Provisional	92.53
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.45
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.44
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	92.41
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	92.37
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.37
PRK07121	492	hypothetical protein; Validated	92.34
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	92.33
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.32
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.26
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.24
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.22
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	92.09
PTZ00052	499	thioredoxin reductase; Provisional	91.97
PRK07417	279	arogenate dehydrogenase; Reviewed	91.93
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	91.92
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.87
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	91.8
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.78
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.74
PRK06719	157	precorrin-2 dehydrogenase; Validated	91.71
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	91.68
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.65
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	91.63
PRK10157	428	putative oxidoreductase FixC; Provisional	91.61
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	91.59
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.55
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	91.54
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	91.45
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.39
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	91.31
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.31
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.25
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.23
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	91.18
PLN02464	627	glycerol-3-phosphate dehydrogenase	91.16
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	91.13
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	91.1
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	91.08
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	91.0
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.98
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	90.96
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	90.96
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	90.93
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	90.92
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.9
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	90.88
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.83
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.8
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.78
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	90.76
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.73
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	90.62
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	90.46
PRK06847	375	hypothetical protein; Provisional	90.45
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	90.44
PRK06223	307	malate dehydrogenase; Reviewed	90.43
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	90.41
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	90.38
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	90.33
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	90.31
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.23
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.21
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	90.19
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	90.16
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.12
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.01
PRK13339	497	malate:quinone oxidoreductase; Reviewed	89.97
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	89.94
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	89.86
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.76
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	89.75
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	89.71
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	89.62
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	89.43
PRK08306	296	dipicolinate synthase subunit A; Reviewed	89.38
PRK07045	388	putative monooxygenase; Reviewed	89.24
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	89.23
PRK10015	429	oxidoreductase; Provisional	89.17
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.15
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	89.14
PRK12779	944	putative bifunctional glutamate synthase subunit b	89.14
PRK06834	488	hypothetical protein; Provisional	89.1
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	89.02
PTZ00082	321	L-lactate dehydrogenase; Provisional	88.95
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	88.93
PRK12842	574	putative succinate dehydrogenase; Reviewed	88.84
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	88.78
TIGR00275	400	flavoprotein, HI0933 family. The model when search	88.71
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	88.69
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.68
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.65
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	88.65
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	88.58
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	88.55
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	88.41
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	88.3
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	88.26
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	88.25
PRK06175	433	L-aspartate oxidase; Provisional	88.25
PLN02256	304	arogenate dehydrogenase	88.14
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	88.1
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	88.08
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	88.04
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.01
PRK12839	572	hypothetical protein; Provisional	87.98
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	87.73
PRK07190	487	hypothetical protein; Provisional	87.71
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	87.7
PLN02712	667	arogenate dehydrogenase	87.61

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=3.1e-55  Score=425.76  Aligned_cols=337  Identities=35%  Similarity=0.626  Sum_probs=259.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      |+++|||||+||||.+++.|++|+++|++|+|+|+|++|||.+.|+++.++.+|.......                  .
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~------------------~   62 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT------------------P   62 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH------------------H
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc------------------c
Confidence            3578999999999999999999999999999999999999999999999887786543110                  0


Q ss_pred             ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                      ......+|+|++||. |+++++++.++++|.++++.+|+||+.+++.|++. +|++.++|+++.++|+++.+++.+||++
T Consensus        63 ~~~~~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l  140 (438)
T PF00996_consen   63 PESLGRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL  140 (438)
T ss_dssp             HHHHHTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred             ccccccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence            111246799999997 99999999999999999999999999999999887 8999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (407)
                      |+|++.+.++....+..+.    ..+....++.++++++++++.+++++.+++++..-+..   ..-++..++.+++.|+
T Consensus       141 mkFl~~v~~~~~~~~~~~~----~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl  213 (438)
T PF00996_consen  141 MKFLKFVANYEEDDPSTHK----GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL  213 (438)
T ss_dssp             HHHHHHHHHGCTTBGGGST----TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCcchhh----ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence            9999999887543221111    11234689999999999999999999998888642211   1125678899999999


Q ss_pred             HhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 015413          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (407)
Q Consensus       259 ~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (407)
                      .|+++||++  +++||.||.++|+|+|||++++.||+++||++|++|..+ ++|++++|. ++|++++|++||++|+++.
T Consensus       214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~-~~g~~~gV~-s~ge~v~~k~vI~dpsy~p  289 (438)
T PF00996_consen  214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVD-EDGKVIGVK-SEGEVVKAKKVIGDPSYLP  289 (438)
T ss_dssp             HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEE-TTTEEEEEE-ETTEEEEESEEEEEGGGBG
T ss_pred             HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeee-cCCeEEEEe-cCCEEEEcCEEEECCccCc
Confidence            999999974  699999999999999999999999999999999999997 478888997 5999999999999998873


Q ss_pred             CCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC--CCCcEEEEeCCCCC---CceEEEEeeccC
Q 015413          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRCK---IDSWYFCLCYAE  404 (407)
Q Consensus       339 ~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~--~~~~~~~~~p~~~~---~~~~~~~~~~~~  404 (407)
                      .+                  ....|.++|+|||+++|+..  +.+.++|+||+.+.   .|.|..+++++|
T Consensus       290 ~~------------------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~~~~dIyv~~~ss~~  342 (438)
T PF00996_consen  290 EK------------------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVGRKSDIYVLQLSSST  342 (438)
T ss_dssp             CG------------------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCTSSS-EEEEEEEGGG
T ss_pred             cc------------------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCcccCCCCCeEEEEECCCc
Confidence            11                  12257899999999999985  35568899998774   467777776665

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=7.3e-52  Score=407.67  Aligned_cols=338  Identities=28%  Similarity=0.511  Sum_probs=276.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      |+++||||||||||+||++|+.|+++|++|+|||+|++|||+++|+++.++..|+.. +.+.                 .
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~-~~~~-----------------~   62 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKP-GETP-----------------P   62 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcc-cCCC-----------------c
Confidence            467899999999999999999999999999999999999999999998876444322 1110                 0


Q ss_pred             ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                      +.+ ...+.|++|+. |+++++++.++++|.++++.+|++|+.+++.|++..+|+++++|+++.++|+++.+++.+|+++
T Consensus        63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l  140 (443)
T PTZ00363         63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC  140 (443)
T ss_pred             hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence            122 35789999996 9999999999999999999999999999999987338899999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (407)
                      |+|++.+.++....+..+.    ...+..+|+.+|++++++++.+++++.+++++.. ..+.  .+.++..++.+++.|.
T Consensus       141 ~kfl~~v~~~~~~~~~~~~----~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~-~~~~--~~~pa~~tl~ri~~y~  213 (443)
T PTZ00363        141 KNFLQYVSNYDENDPETHK----GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYT-NDDY--LNKPAIETVMRIKLYM  213 (443)
T ss_pred             HHHHHHHHhhccCChhhhc----ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhc-cccc--ccCCHHHHHHHHHHHH
Confidence            9999999877543221111    0113468999999999999999999888776642 1110  0124667788899999


Q ss_pred             HhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 015413          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (407)
Q Consensus       259 ~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (407)
                      .|+++|+.  +++.||+||+++|+++|+|.++++||+|+|+++|++|.++ +++++++|++++|++++|++||++|++. 
T Consensus       214 ~S~~~~g~--~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~-~~g~~~~V~~~~Ge~i~a~~VV~~~s~~-  289 (443)
T PTZ00363        214 DSLSRYGK--SPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFD-ENGKVCGVKSEGGEVAKCKLVICDPSYF-  289 (443)
T ss_pred             HHHhhccC--CcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEc-CCCeEEEEEECCCcEEECCEEEECcccc-
Confidence            99999985  3488999999999999999999999999999999999987 3577889999999999999999999886 


Q ss_pred             CCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC--CCCcEEEEeCCCCC---CceEEEEeeccC
Q 015413          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRCK---IDSWYFCLCYAE  404 (407)
Q Consensus       339 ~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~--~~~~~~~~~p~~~~---~~~~~~~~~~~~  404 (407)
                      +..                 ..+.|.|+|+|||+++|+..  +.+.++|+||+.+.   ++.|..++|++|
T Consensus       290 p~~-----------------~~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~~~~i~v~~~s~~~  343 (443)
T PTZ00363        290 PDK-----------------VKKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGRKNDIYIMLVSSNH  343 (443)
T ss_pred             ccc-----------------cccccEEEEEEEEEcccccccCcCccEEEEECCcccCCCCCEEEEEecCCC
Confidence            321                 12478999999999999963  35678999999874   477777777665

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-47  Score=352.83  Aligned_cols=336  Identities=32%  Similarity=0.533  Sum_probs=280.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      +++|||||+|+|+..++.+.+|+.+|++|+|+|+|++|||-.+|+++.++..|+.......                 .+
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~   64 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE   64 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence            4569999999999999999999999999999999999999999999888777776331100                 01


Q ss_pred             cccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (407)
                      . ....++|++|+. |+++++.+.++.+|.+.++.+|++|+.+.+.|++. +|+++++|.++.+++.++.+++.+|+++|
T Consensus        65 ~-~~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~  141 (440)
T KOG1439|consen   65 K-LGRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM  141 (440)
T ss_pred             c-cccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence            1 135789999998 99999999999999999999999999999999987 77999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCcccccccccccccc-CCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413          180 RFFKLVQGHLSLDESEENNVRISEEDL-DSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (407)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (407)
                      ||+..+.++.+..+..+.     ..+. ..++.+++.++++.+..+++..+++++...+  ... +.++..++.++..|.
T Consensus       142 kFl~~V~n~~e~~~~~~~-----~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd--~~l-d~p~~~~~~ri~~Y~  213 (440)
T KOG1439|consen  142 KFLKFVLNYDEEDPKTWQ-----GYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDD--SYL-DQPAKETLERILLYV  213 (440)
T ss_pred             HHHHHHhhhhhhcccccc-----ccccccchHHHHHHHhcccccceeeeeeeeEEEecc--hhc-cCccHHHHHHHHHHH
Confidence            999999987654332111     1122 2489999999999999999887766654322  111 246778899999999


Q ss_pred             HhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 015413          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (407)
Q Consensus       259 ~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (407)
                      +|+++|+.++  ++||+||.++|+|+|||.++..||+++||.++.+|..+ ++|++.+|. +.++..+++.||++|++..
T Consensus       214 ~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~-~~gk~igvk-~~~~v~~~k~vi~dpSY~~  289 (440)
T KOG1439|consen  214 RSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINET-KNGKVIGVK-SGGEVAKCKKVICDPSYFP  289 (440)
T ss_pred             HHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeecc-CCccEEEEe-cCCceeecceEEecCccch
Confidence            9999999654  89999999999999999999999999999999999885 368888887 5667789999999999973


Q ss_pred             CCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC--CCCCcEEEEeCCCCC---CceEEEEeeccCC
Q 015413          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDLSNFLVIFPPRCK---IDSWYFCLCYAED  405 (407)
Q Consensus       339 ~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~--~~~~~~~~~~p~~~~---~~~~~~~~~~~~~  405 (407)
                      .+                  ....|.++|++||.++|..  .+..+++++||+.+.   .|.+.+|++.+|.
T Consensus       290 ~~------------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~rksdi~v~~~ss~~~  343 (440)
T KOG1439|consen  290 QK------------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVGRKSDIYVFGLSSAHN  343 (440)
T ss_pred             HH------------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhCCcccEEEEEeccCCC
Confidence            22                  1235789999999999864  667889999999884   5999999999885

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-47  Score=352.75  Aligned_cols=355  Identities=36%  Similarity=0.588  Sum_probs=277.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchh--------hhhhhhc---cCC----------
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHS----------   77 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~--------~~~~~~~---~~~----------   77 (407)
                      .++.|||||||+|+.+.+.|++.+|.|.+|++||+|.+|||.|.+|++.        .+..+.+   +..          
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~   84 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA   84 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence            3578999999999999999999999999999999999999999999987        3322321   111          


Q ss_pred             CCCCCCCCCccccccccc-c--------------ccccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccc
Q 015413           78 TPSSVCPDPLYSDVEISN-Y--------------ASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI  142 (407)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~  142 (407)
                      ++.+++.+.+|.+++..+ .              ....+.+..|+|++||. |+++++.+.++++|+.+++.+|.||+.+
T Consensus        85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V  163 (547)
T KOG4405|consen   85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV  163 (547)
T ss_pred             CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence            122233345555555441 0              11122346899999998 9999999999999999999999999999


Q ss_pred             cceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChh
Q 015413          143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK  222 (407)
Q Consensus       143 ~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~  222 (407)
                      +..+.+. +|++..+|++++++|.++.|+..+|+.||+|+.++.++..+     ...+...+..+.||.+||++++++++
T Consensus       164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tE-----k~~~~~~~~~e~~F~EyL~~~rltp~  237 (547)
T KOG4405|consen  164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTE-----KDPDEYVEFRERPFSEYLKTMRLTPK  237 (547)
T ss_pred             chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhc-----cCcHHHHHhhcCcHHHHHHhcCCChh
Confidence            9988776 78999999999999999999999999999999999988522     11122334567899999999999999


Q ss_pred             hHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCce
Q 015413          223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV  302 (407)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V  302 (407)
                      ++.+++++|+|..+.+      .++..++.+.+.|+.++|+||+++  |++|.||-|+|+|+|||+|++.||.|+|+++|
T Consensus       238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V  309 (547)
T KOG4405|consen  238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV  309 (547)
T ss_pred             hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence            9999999999975432      578889999999999999999754  99999999999999999999999999999999


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC-C
Q 015413          303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-S  381 (407)
Q Consensus       303 ~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~-~  381 (407)
                      +.|..+.+..++..+..+.|+++.|+.+|+.|.++ +.-.    +          .+..+..++|+++|++.++...+ .
T Consensus       310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~----~----------~~~~~K~Israv~itd~sil~~e~~  374 (547)
T KOG4405|consen  310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV----C----------SRVQLKQISRAVLITDPSILKTELD  374 (547)
T ss_pred             hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc----c----------cccchhhcceeEEecCccccchhHH
Confidence            99999844443322333679999999999999987 4321    1          12224579999999999976322 2


Q ss_pred             c--EEEEeCCCCC--------CceEEEEeecc
Q 015413          382 N--FLVIFPPRCK--------IDSWYFCLCYA  403 (407)
Q Consensus       382 ~--~~~~~p~~~~--------~~~~~~~~~~~  403 (407)
                      .  .++..|+...        +..+.+|.||-
T Consensus       375 q~~~ll~~~~~epg~~avr~iel~~~t~tc~k  406 (547)
T KOG4405|consen  375 QQLSLLSLLAVEPGAMAVRLIELCSSTMTCPK  406 (547)
T ss_pred             hhhhhhhccccCcchhhHHHHHhhcccccCcc
Confidence            2  3445555443        34555666653

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-43  Score=320.97  Aligned_cols=330  Identities=30%  Similarity=0.508  Sum_probs=270.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      +.|||||+|+|+..++.+++|+.+|++|+|+|+|++||+-.+|++...+..|++....-.                   .
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p-------------------~   65 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRP-------------------S   65 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccc-------------------c
Confidence            469999999999999999999999999999999999999999999988888876652210                   0


Q ss_pred             ccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHH
Q 015413          101 LSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~  180 (407)
                      -....++|++|+. |+++++.++++.+|.+.|+.+|++|+++.+.|++. +|+++++|.++.++|.++.+++.+|+++||
T Consensus        66 k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~vmr  143 (434)
T COG5044          66 KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVMR  143 (434)
T ss_pred             ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHHHH
Confidence            1124688999998 99999999999999999999999999999999887 679999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCccccccccccccccCCcHHHHHH-hcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHH
Q 015413          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS  259 (407)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~  259 (407)
                      |++++.++.+...      .....+.+.++.+++. +++++.....++.++++++ ++.+     ++++.++.++..|++
T Consensus       144 Fl~~V~n~~~~~~------~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~-ldl~-----~p~re~~erIl~Y~~  211 (434)
T COG5044         144 FLKWVSNYAEQKS------TLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLD-----IPAREALERILRYMR  211 (434)
T ss_pred             HHHHHHhHHhhhh------hchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh-cccc-----CCchHHHHHHHHHHH
Confidence            9999888764211      1112345567777775 7999999999998888775 3332     578899999999999


Q ss_pred             hhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCC
Q 015413          260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP  339 (407)
Q Consensus       260 s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~  339 (407)
                      |++.||.+  +++||++|.++|+|.|||.++..||+++||+++.+|...   ..+.+|. .++.+..|.+||.+|++.-.
T Consensus       212 Sf~~yg~~--pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~~~  285 (434)
T COG5044         212 SFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYFRE  285 (434)
T ss_pred             hhcccCCC--cceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccccc
Confidence            99999964  599999999999999999999999999999999999643   3334665 56778999999999988622


Q ss_pred             CCCccchhhhhhhhhhhcccCCCceEEEEEEEeC-CC--CCCCCCcEEEEeCCCCC---CceEEEEeeccC
Q 015413          340 GSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRCK---IDSWYFCLCYAE  404 (407)
Q Consensus       340 ~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~-~p--~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~  404 (407)
                      + + ...+          |   ...++|++||.. .|  +....+.++++|||.+.   +|.+.++++-.|
T Consensus       286 ~-~-~~~~----------q---~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~~~~i~v~~lgs~~  341 (434)
T COG5044         286 D-S-KSVG----------Q---FYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKRKNDIQVAGLGSGS  341 (434)
T ss_pred             c-c-cccc----------h---hhhhhHhhhhhhcCccccccccccceeeechhhhcccCceEEEEecCCC
Confidence            2 1 0111          1   136899999988 54  55778999999999994   578887776554

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.96  E-value=3.9e-27  Score=237.20  Aligned_cols=288  Identities=15%  Similarity=0.159  Sum_probs=193.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (407)
                      +.||+|||||++||+||+.|+++    |++|+|||+++++||+++|.+.+                              
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------   51 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------   51 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence            36999999999999999999999    99999999999999999997543                              


Q ss_pred             cccccCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHH
Q 015413           98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN  176 (407)
Q Consensus        98 ~~~~~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~  176 (407)
                               .|.+|+ |+++++... .+.+++.++|+.+++.+......+++..+|+.+++|.+..+.+....+++.++.
T Consensus        52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~  121 (462)
T TIGR00562        52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL  121 (462)
T ss_pred             ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence                     245777 688886655 588999999988776543333345444238888888776666655555555544


Q ss_pred             HHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHH
Q 015413          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL  256 (407)
Q Consensus       177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~  256 (407)
                      ++.  +......              ....++|+.+|+++. +.+.+.+.+...+...-+..++  +++|+..++..+..
T Consensus       122 ~~~--~~~~~~~--------------~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~  182 (462)
T TIGR00562       122 RAG--MDFIRPA--------------SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ  182 (462)
T ss_pred             Hhh--hhhccCC--------------CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence            332  1111000              012358999999865 3444444333222222234443  34676655543322


Q ss_pred             HHH-------hh------------ccccCCCcc-eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEE
Q 015413          257 YNS-------SI------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (407)
Q Consensus       257 ~~~-------s~------------~~~~~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (407)
                      ...       .+            ..+....+. +.+++||+++|+++|++.+.  .++|++|++|++|..+  +++ +.
T Consensus       183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~  257 (462)
T TIGR00562       183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT  257 (462)
T ss_pred             HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence            111       00            001111122 67799999999999987553  2789999999999876  444 46


Q ss_pred             EEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          317 VRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       317 V~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      |++++|+++.||+||+ .|...+..+    -|++|+...+..++..++.+.++++.|++|++
T Consensus       258 v~~~~g~~~~ad~VI~t~P~~~~~~l----l~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~  315 (462)
T TIGR00562       258 LELDNGVTVETDSVVVTAPHKAAAGL----LSELSNSASSHLDKIHSPPVANVNLGFPEGSV  315 (462)
T ss_pred             EEECCCcEEEcCEEEECCCHHHHHHH----hcccCHHHHHHHhcCCCCceEEEEEEEchHHc
Confidence            7777888899999995 466555554    35666666666677889999999999998865

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.96  E-value=2.6e-27  Score=240.80  Aligned_cols=290  Identities=15%  Similarity=0.153  Sum_probs=190.4

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccCC
Q 015413           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH  104 (407)
Q Consensus        25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (407)
                      |||||||++||+||++|+++|++|+||||++++||+++|++.+                                     
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~-------------------------------------   43 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD-------------------------------------   43 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence            6999999999999999999999999999999999999998654                                     


Q ss_pred             CCceEEecCCCeEEeeCcHHHHHHHhcCc--cccccccccccee-eEccCCceeecCCCHHHHhhh-ccCChHHHHHHHH
Q 015413          105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR  180 (407)
Q Consensus       105 ~~~~~idl~Gp~~~~~~~~~~~~l~~~g~--~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l~~  180 (407)
                        .|.+|. |++++..++.+.+++.+.|.  .+++++...+..+ ++..+|+.+.++.+....... ..+++.+...+.+
T Consensus        44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  120 (502)
T TIGR02734        44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR  120 (502)
T ss_pred             --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence              356788 58888766667777787774  5677887776655 333467778888765432211 2234556666666


Q ss_pred             HHHHHHhhcC-------CCcccc--cc-----ccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhc
Q 015413          181 FFKLVQGHLS-------LDESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (407)
Q Consensus       181 ~~~~~~~~~~-------~~~~~~--~~-----~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  246 (407)
                      |++.++....       ..+...  ..     ..........|+.+|++++..++.++.++......  +..++  .+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~--~g~~p--~~~~  196 (502)
T TIGR02734       121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALF--LGGNP--FRTP  196 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhccccee--eccCc--ccch
Confidence            6655443221       001000  00     01112335689999999888888888876532111  12222  1122


Q ss_pred             hhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 015413          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (407)
Q Consensus       247 ~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~  326 (407)
                      +.   ..+..+..    +.   +..++|.||++.++++|.+.+++.|++|+++++|++|..+  ++++++|++.+|++++
T Consensus       197 ~~---~~l~~~~~----~~---~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~  264 (502)
T TIGR02734       197 SI---YALISALE----RE---WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD  264 (502)
T ss_pred             HH---HHHHHHHH----hh---ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence            21   11211211    11   1267899999999999999999999999999999999986  6777899988999999


Q ss_pred             cCEEEEC--CCCCCCCCCccchhhh-hhhh-hhhcccCCCceEEEEEEEeC
Q 015413          327 SHKLVLD--PSFTVPGSLASSHQQL-QESF-QAFSLSDNKGKVARGICITR  373 (407)
Q Consensus       327 Ad~VI~~--p~~~~~~~~~~~~p~l-p~~~-~~~~~~~~~g~~~k~i~i~~  373 (407)
                      ||+||++  +..++..+.   .+++ |... +.+.+.....+...+.+.++
T Consensus       265 ad~VI~a~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~  312 (502)
T TIGR02734       265 ADAVVSNADLHHTYRRLL---PNHPRRRYPAARLSRKRPSPSLFVLYFGLL  312 (502)
T ss_pred             CCEEEECCcHHHHHHHhc---CccccccccccccccCCcCCeeeEEEEeec
Confidence            9999953  334433332   1222 2222 22323333456677777877

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.95  E-value=1.2e-26  Score=233.58  Aligned_cols=285  Identities=14%  Similarity=0.195  Sum_probs=184.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhC------CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY   96 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~------G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (407)
                      .+|||||||++||+||+.|+++      |++|+|||+++|+||+++|.+.+|                            
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g----------------------------   53 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKD----------------------------   53 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCC----------------------------
Confidence            3699999999999999999986      379999999999999999976432                            


Q ss_pred             ccccccCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCC--------HHHHhhh
Q 015413           97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD  167 (407)
Q Consensus        97 ~~~~~~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~  167 (407)
                                 |.+|+ |+++++.. ..+.+++.++|+.+++.+......|++. +|...++|.+        ..+.++.
T Consensus        54 -----------~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~  120 (463)
T PRK12416         54 -----------FIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS  120 (463)
T ss_pred             -----------EEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence                       44677 58877544 4678999999998776655544455554 5666665542        2233333


Q ss_pred             ccCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhch
Q 015413          168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (407)
Q Consensus       168 ~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  247 (407)
                      ..+++..|...      +...... .        ...+.++|+.+|+++. +.+++.+.+...+...-+..++  +++|+
T Consensus       121 ~~~~~~~~~~~------~~~~~~~-~--------~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~--~~ls~  182 (463)
T PRK12416        121 TLVSTKGKIVA------LKDFITK-N--------KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKL--NELTM  182 (463)
T ss_pred             CcCCHHHHHHh------hhhhccC-C--------CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCc--ccccH
Confidence            33333222211      1111100 0        0113578999999975 4444443332222222234443  34666


Q ss_pred             hhHHHHHHHHHHhhccc-----------c-CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEE
Q 015413          248 RDGINRLALYNSSIGRF-----------Q-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (407)
Q Consensus       248 ~~~l~~~~~~~~s~~~~-----------~-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~  315 (407)
                      ...+..+..+....+..           . .....+.+++||+++|+++|++.+..  ++|++|++|++|..+  +++ +
T Consensus       183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~  257 (463)
T PRK12416        183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y  257 (463)
T ss_pred             HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence            54445444443222110           0 11123778999999999999876543  689999999999986  444 4


Q ss_pred             EEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          316 GVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       316 gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      .|++.+|+++.||+||+ .|...+.++.  ++|+++....++    .+..+.++.+.|+++++
T Consensus       258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~  314 (463)
T PRK12416        258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDE  314 (463)
T ss_pred             EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhc
Confidence            77777888899999995 4666666654  467777665444    35689999999998754

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=5.4e-27  Score=236.23  Aligned_cols=257  Identities=20%  Similarity=0.227  Sum_probs=164.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      |..+||||||||++||+||++|||+|++|+||||++++||+++|++++                                
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------------------   48 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------------------   48 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence            456999999999999999999999999999999999999999998764                                


Q ss_pred             cccCCCCceEEecCCCeEEeeCcHHHHHHHhcC-cccc-ccccccccee-eEccCCceeecCCCHHHHhh-hccCChHHH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK  175 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g-~~~~-~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~-~~~l~~~~k  175 (407)
                             .|.+|+ ||+++...... .++.+++ ...+ +++...+..+ .+..+|....+..+...... ....++.+.
T Consensus        49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~  119 (487)
T COG1233          49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG  119 (487)
T ss_pred             -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence                   356777 58777655544 5555555 4443 6666666655 33345777777766543322 123344555


Q ss_pred             HHHHHHHHHHHhhcC----CC--ccccc---ccccc------ccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcch
Q 015413          176 NQLMRFFKLVQGHLS----LD--ESEEN---NVRIS------EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (407)
Q Consensus       176 ~~l~~~~~~~~~~~~----~~--~~~~~---~~~~~------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (407)
                      ..+.+++..+.+...    ..  +....   .....      ......+..+++.....++.++..+.+..... . ..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~-~-~~p  197 (487)
T COG1233         120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG-G-APP  197 (487)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCC
Confidence            555555443322110    00  00000   00000      01123566667765555566776665532222 1 222


Q ss_pred             hhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC
Q 015413          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (407)
Q Consensus       241 ~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~  320 (407)
                      ..  .+   ++..+..+.  ....|     +.||+||++.|+++|++.+++.||+|+++++|++|.++  +|+.++|++.
T Consensus       198 ~~--~~---a~~~~~~~~--~~~~G-----~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~  263 (487)
T COG1233         198 ST--PP---ALYLLLSHL--GLSGG-----VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS  263 (487)
T ss_pred             Cc--hh---HHHHHHHHh--cccCC-----eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence            11  11   122222111  11122     77999999999999999999999999999999999997  7766788877


Q ss_pred             CCcEEEcCEEEEC
Q 015413          321 SGQDILSHKLVLD  333 (407)
Q Consensus       321 ~G~~i~Ad~VI~~  333 (407)
                      +|+.+.||.||++
T Consensus       264 ~g~~~~ad~vv~~  276 (487)
T COG1233         264 DGENIEADAVVSN  276 (487)
T ss_pred             ccceeccceeEec
Confidence            7778999999954

>PLN02576 protoporphyrinogen oxidase

Probab=99.95  E-value=2.6e-26  Score=233.21  Aligned_cols=293  Identities=17%  Similarity=0.163  Sum_probs=191.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      ..++||||||||++||+||++|+++ |++|+|||+++++||+++|.+.+|                              
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g------------------------------   59 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG------------------------------   59 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC------------------------------
Confidence            4467999999999999999999999 999999999999999999976433                              


Q ss_pred             ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccc-cceeeEccCCceeecCCCHHHHhhhccCChHHHHH
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (407)
                               |.+|. ||+++...+..+..+.+.|+.+++.|... ...|++. +|+.+++|.+..+.+....+++.+|.+
T Consensus        60 ---------~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~  128 (496)
T PLN02576         60 ---------FIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIR  128 (496)
T ss_pred             ---------eEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHH
Confidence                     44677 58887766655555555588777666432 2345554 788999998766666556666655554


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHH
Q 015413          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (407)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (407)
                      +...  .. .+...          .....++|+.+|+++. +++.+.+.+...+...-+..++  +++|+..++..+..+
T Consensus       129 ~~~~--~~-~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~  192 (496)
T PLN02576        129 AGLG--AF-GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNL  192 (496)
T ss_pred             HhHH--Hh-hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHH
Confidence            3221  11 11000          0113578999999975 5666655444332222344454  457776655543322


Q ss_pred             HHhhcc--------c----------------c-CCCcceEeecCCcchHHHHHHHHHHhcC-cEEEeCCceeEEEEecCC
Q 015413          258 NSSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS  311 (407)
Q Consensus       258 ~~s~~~--------~----------------~-~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~  311 (407)
                      ....+.        .                . .......+++||+++|+++|++.   .+ ++|++|++|++|+.+  +
T Consensus       193 e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~---l~~~~i~l~~~V~~I~~~--~  267 (496)
T PLN02576        193 EKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKR---LGKDKVKLNWKVLSLSKN--D  267 (496)
T ss_pred             HHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHh---hCcCcEEcCCEEEEEEEC--C
Confidence            110000        0                0 01123567899999999998753   45 789999999999986  3


Q ss_pred             CcEEEEEe--CCCc-EEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413          312 GSYKGVRL--ASGQ-DILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (407)
Q Consensus       312 g~~~gV~~--~~G~-~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~  378 (407)
                      +..+.|++  .+|+ ++.||+||+ .|...+..+.    +++++......+...+..++++++.|+++++.
T Consensus       268 ~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll----~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~  334 (496)
T PLN02576        268 DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEML----RPKSPAAADALPEFYYPPVAAVTTSYPKEAVK  334 (496)
T ss_pred             CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHh----cccCHHHHHHhccCCCCceEEEEEEEchHHcc
Confidence            33123433  3453 699999995 5766666654    22334444444667789999999999998764

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.95  E-value=1.2e-25  Score=228.05  Aligned_cols=297  Identities=12%  Similarity=0.059  Sum_probs=174.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (407)
                      .||||||||++||+||++|+++|++|+|||+++++||+++|++.+                                   
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~-----------------------------------   46 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR-----------------------------------   46 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence            589999999999999999999999999999999999999998754                                   


Q ss_pred             CCCCceEEecCCCeEEee---CcHHHHHHHhcCccccccccccccee-eEccCC-ceeecCCCHHHHhhh-ccCChHHHH
Q 015413          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN  176 (407)
Q Consensus       103 ~~~~~~~idl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~-~~~~~g-~~~~~p~~~~~~~~~-~~l~~~~k~  176 (407)
                          .|.+|. |++++..   .+.+-+++.++|+... ++...++.+ ++..+| ..+.++.+....... ....+.+.+
T Consensus        47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~  120 (492)
T TIGR02733        47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER  120 (492)
T ss_pred             ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence                356777 5888754   3345566777886522 123333322 223356 445566654332210 111233321


Q ss_pred             HHHH---HHHHHHhhcCCCc----c-ccc----------cccccccccCCcHHHHHHhc--CCChhhHHHHHHHHHhccC
Q 015413          177 QLMR---FFKLVQGHLSLDE----S-EEN----------NVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY  236 (407)
Q Consensus       177 ~l~~---~~~~~~~~~~~~~----~-~~~----------~~~~~~~~~~~s~~~~l~~~--~~~~~~~~~~~~~~~~~~~  236 (407)
                      -+..   ............+    . ...          .......+...|+.+|++++  ..++.++.++........ 
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~-  199 (492)
T TIGR02733       121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYS-  199 (492)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhc-
Confidence            1111   1111000000000    0 000          00000113358999999986  456778887653222111 


Q ss_pred             CcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEE
Q 015413          237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (407)
Q Consensus       237 ~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (407)
                      ...+  .+.++..++. +..+    .....  | .++++||+++|+++|++.+++.|++|+++++|++|.++  ++++++
T Consensus       200 ~~~~--~~~~~~~~~~-~~~~----~~~~~--G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g  267 (492)
T TIGR02733       200 QEDA--DETAALYGAT-VLQM----AQAPH--G-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW  267 (492)
T ss_pred             cCCh--hhhhHHHHHH-Hhhc----cccCC--C-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence            1111  1222221111 1111    11110  1 56899999999999999999999999999999999987  666677


Q ss_pred             EEeCCC-----cEEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhcccCCCce-EEEEEEEeCCC
Q 015413          317 VRLASG-----QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGK-VARGICITRSS  375 (407)
Q Consensus       317 V~~~~G-----~~i~Ad~VI~~-p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~-~~k~i~i~~~p  375 (407)
                      |.+.+|     +++.||+||++ |...+.++.  ..+.+|+......++.++.. ...+.+.+++.
T Consensus       268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll--~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~  331 (492)
T TIGR02733       268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELL--GPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRA  331 (492)
T ss_pred             EEEecCCCCceEEEECCEEEECCCHHHHHHhc--CcccCCHHHHHHHhcCCCCCceEEEEEeeccc
Confidence            876665     57999999963 333334443  23566665444334444443 55777888873

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK07233 hypothetical protein; Provisional

Probab=99.95  E-value=6.1e-26  Score=226.56  Aligned_cols=287  Identities=15%  Similarity=0.151  Sum_probs=183.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (407)
                      +|||||||++||+||+.|+++|++|+|||+++++||+++++..+|   +                               
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g---~-------------------------------   46 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG---L-------------------------------   46 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC---c-------------------------------
Confidence            589999999999999999999999999999999999999987543   2                               


Q ss_pred             CCCceEEecCCCeEEee-CcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHHHH
Q 015413          104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (407)
Q Consensus       104 ~~~~~~idl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~  182 (407)
                           .+|. |.++++. ...+.+++.++|+...+.+......+.+  +|+.++++. ...++..+.+++.++.++....
T Consensus        47 -----~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  117 (434)
T PRK07233         47 -----PIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLGT-PLELLRFPHLSLIDKFRLGLLT  117 (434)
T ss_pred             -----chhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCCC-HHHHHcCCCCCHHHHHHhHHHH
Confidence                 2344 3444433 3478888999998766555443333333  565554432 2234444455555555433222


Q ss_pred             HHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhc
Q 015413          183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG  262 (407)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~  262 (407)
                      ...... .          ...+..+.++.+|++++..++..+.++... ....+..++  +++|+..++..+..+...  
T Consensus       118 ~~~~~~-~----------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~s~~~~~~~~~~~~~~--  181 (434)
T PRK07233        118 LLARRI-K----------DWRALDKVPAEEWLRRWSGEGVYEVFWEPL-LESKFGDYA--DDVSAAWLWSRIKRRGNR--  181 (434)
T ss_pred             Hhhhhc-c----------cccccccccHHHHHHHhcCHHHHHHHHHHH-HhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence            111110 0          012345689999999765444444443321 111122332  346765544444322110  


Q ss_pred             cccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCC
Q 015413          263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGS  341 (407)
Q Consensus       263 ~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~  341 (407)
                      ........+.+|+||++.|+++|++.+...|++|++|++|++|..+  +++++.+. .++++++||+||+ .|...+.++
T Consensus       182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l  258 (434)
T PRK07233        182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL  258 (434)
T ss_pred             ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence            0100011267899999999999999999999999999999999986  56655555 6778899999995 455554554


Q ss_pred             CccchhhhhhhhhhhcccCCCceEEEEEEEeCCCC
Q 015413          342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (407)
Q Consensus       342 ~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~  376 (407)
                      .    |++|+......+...+..+.++.+.+++|+
T Consensus       259 l----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  289 (434)
T PRK07233        259 V----PDLPADVLARLRRIDYQGVVCMVLKLRRPL  289 (434)
T ss_pred             c----CCCcHHHHhhhcccCccceEEEEEEecCCC
Confidence            2    445554444445566777888899999985

>PLN02268 probable polyamine oxidase

Probab=99.95  E-value=3.8e-26  Score=228.27  Aligned_cols=276  Identities=13%  Similarity=0.145  Sum_probs=170.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (407)
                      +|||||||++||+||+.|+++|++|+||||++|+|||++|.+..|                                   
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g-----------------------------------   46 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFG-----------------------------------   46 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCC-----------------------------------
Confidence            799999999999999999999999999999999999999864322                                   


Q ss_pred             CCCceEEecCCCeEEee---CcHHHHHHHhcCcccccccccccceeeEccCC-ceeecCCCHHHHhhhccCChHHHHHH-
Q 015413          104 HPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADA-KLCSVPDSRAAIFKDKSLGLMEKNQL-  178 (407)
Q Consensus       104 ~~~~~~idl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~l~~~~k~~l-  178 (407)
                          +.+|+ |+++++.   +..+.+++.++|+..+...  .+..+++. ++ ..+.+...  .   ...++......+ 
T Consensus        47 ----~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~-~~~~~~~~~~~--~---~~~~~~~~~~~~~  113 (435)
T PLN02268         47 ----FPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYD-HDLESYALFDM--D---GNQVPQELVTKVG  113 (435)
T ss_pred             ----cccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCcccccc-ccccccceecC--C---CCCCCHHHHHHHH
Confidence                33677 6898864   2357888999998644221  11112221 11 10000000  0   001111111111 


Q ss_pred             ---HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCC-------hhhHHHHHHHH-Hh-ccCCcchhhhhhc
Q 015413          179 ---MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP-------HKIKSIVLYAI-AM-ADYDQEVSEYVLK  246 (407)
Q Consensus       179 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~-------~~~~~~~~~~~-~~-~~~~~~~~~~~~s  246 (407)
                         .+++..+....            .....+.|+.+|++++...       ...+.++.+.+ .+ ..+..++  +++|
T Consensus       114 ~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls  179 (435)
T PLN02268        114 ETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTIS  179 (435)
T ss_pred             HHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCc
Confidence               22222221110            0124567888987654211       12233332211 11 1123333  2344


Q ss_pred             hhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 015413          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (407)
Q Consensus       247 ~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~  326 (407)
                      +..       +.. ...+.   |...++.+|++.|+++|++     |..|++|++|++|..+  ++. +.|++.+|+++.
T Consensus       180 ~~~-------~~~-~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~  240 (435)
T PLN02268        180 LKS-------WDQ-EELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTFV  240 (435)
T ss_pred             hhh-------cCC-ccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEEE
Confidence            431       000 00011   1134688899999998864     5579999999999986  344 467778888999


Q ss_pred             cCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC
Q 015413          327 SHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL  380 (407)
Q Consensus       327 Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~  380 (407)
                      ||+||+ .|...+.+..+.|.|+||+.+.+..++..||.+.|+++.|++|||++.
T Consensus       241 ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~  295 (435)
T PLN02268        241 ADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV  295 (435)
T ss_pred             cCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC
Confidence            999994 677766654467899999988888788889999999999999999754

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.94  E-value=8.8e-25  Score=219.51  Aligned_cols=293  Identities=17%  Similarity=0.162  Sum_probs=186.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (407)
                      +|+|||||++||+||+.|+++|++|+|||+++++||+++|++..                                    
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------   44 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------   44 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence            58999999999999999999999999999999999999986421                                    


Q ss_pred             CCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEc-cCCcee--ecC---CCH---HHHhh-hccCCh
Q 015413          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--SVP---DSR---AAIFK-DKSLGL  172 (407)
Q Consensus       104 ~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~-~~g~~~--~~p---~~~---~~~~~-~~~l~~  172 (407)
                        ..+.+|. |+++++.. ..+.+++.++|+.+.+.|......|... .++...  .+|   ...   .++++ ...+++
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (453)
T TIGR02731        45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW  121 (453)
T ss_pred             --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence              1234666 57776543 4788999999988777665533322211 112221  222   111   12222 123555


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHH--HHHhccCCcchhhhhhchhhH
Q 015413          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY--AIAMADYDQEVSEYVLKTRDG  250 (407)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~  250 (407)
                      .++.++..-+..  .....       .+...++.++|+.+|+++.+.++.+.+.+..  ..++.  ..++  +++|+..+
T Consensus       122 ~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~--~~~p--~~~S~~~~  188 (453)
T TIGR02731       122 PEKIKFAIGLLP--AIVRG-------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALN--FINP--DELSMTVV  188 (453)
T ss_pred             HHHHHHHHHhHH--HHhcC-------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHC--CCCH--HHHHHHHH
Confidence            555543321111  00000       0112345689999999999999987764332  22332  2343  34777776


Q ss_pred             HHHHHHHHHhhccccCCCcceEeecCC-cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-----E
Q 015413          251 INRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----D  324 (407)
Q Consensus       251 l~~~~~~~~s~~~~~~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-----~  324 (407)
                      +..+..++.  ..++.   ...+..|| ++.++++|++.++..|++|++|++|++|+.+ +++++++|++.+|+     +
T Consensus       189 ~~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~-~~~~v~~v~~~~~~~~~~~~  262 (453)
T TIGR02731       189 LTALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLN-EDGSVKHFVLADGEGQRRFE  262 (453)
T ss_pred             HHHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEEC-CCCCEEEEEEecCCCCceeE
Confidence            665554442  12221   13344554 5789999999998999999999999999875 36677788887665     7


Q ss_pred             EEcCEEEE-CCCCCCCCCCccchhhhh-h-hhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413          325 ILSHKLVL-DPSFTVPGSLASSHQQLQ-E-SFQAFSLSDNKGKVARGICITRSSLKP  378 (407)
Q Consensus       325 i~Ad~VI~-~p~~~~~~~~~~~~p~lp-~-~~~~~~~~~~~g~~~k~i~i~~~p~~~  378 (407)
                      +.||.||+ .|...+.++.   .+.++ . ..+++ +..+++.++++.+.|++|++.
T Consensus       263 ~~a~~VI~a~p~~~~~~lL---~~~~~~~~~~~~~-~~~~~~~~~~v~l~~~~~~~~  315 (453)
T TIGR02731       263 VTADAYVSAMPVDIFKLLL---PQPWKQMPFFQKL-NGLEGVPVINVHIWFDRKLTT  315 (453)
T ss_pred             EECCEEEEcCCHHHHHhhC---chhhhcCHHHHHh-hcCCCCcEEEEEEEEccccCC
Confidence            99999995 3555556653   11221 1 22333 334477999999999999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07208 hypothetical protein; Provisional

Probab=99.94  E-value=5.3e-25  Score=222.68  Aligned_cols=292  Identities=14%  Similarity=0.190  Sum_probs=183.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      ||.+.||||||||++||+||+.|+++|++|+|+|+++++||++.|...++                              
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------   50 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------   50 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC------------------------------
Confidence            36678999999999999999999999999999999999999999875433                              


Q ss_pred             ccccCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHH
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (407)
                               +.+|+ |+++++..+ .+.+++.+++..+.+..... ..+++. +|+...+|.+..+.+.  .+++.++.+
T Consensus        51 ---------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~  116 (479)
T PRK07208         51 ---------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK  116 (479)
T ss_pred             ---------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence                     33666 588776544 67888888876332222221 223333 6788888865333332  233333222


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHH-HHHHhccCCcchhhhhhchhhHHHHH-
Q 015413          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRL-  254 (407)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~l~~~-  254 (407)
                      +..  ..+....            .....+.++.+|+++. +.+.+.+ ++. +...+  +..++  +++|+.+++.++ 
T Consensus       117 ~~~--~~~~~~~------------~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~  177 (479)
T PRK07208        117 CGA--SYLKARL------------RPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIK  177 (479)
T ss_pred             HHH--HHHHHhc------------CCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCccc
Confidence            111  1111110            0012468999999964 3444443 332 22222  33444  347766533221 


Q ss_pred             --------HHHHHhh-c-------cccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEE
Q 015413          255 --------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR  318 (407)
Q Consensus       255 --------~~~~~s~-~-------~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~  318 (407)
                              ....... +       ........+.||+||+++|+++|++.++..|++|++|++|++|..+ +++.++++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~  256 (479)
T PRK07208        178 GLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVV  256 (479)
T ss_pred             CCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEE
Confidence                    1111110 0       0000012377899999999999999999999999999999999986 234343444


Q ss_pred             e--CCCc--EEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          319 L--ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       319 ~--~~G~--~i~Ad~VI~~-p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      .  .+|+  ++.||+||++ |...+.++.   .|++|+......+..++..++++.+.++++..
T Consensus       257 ~~~~~g~~~~~~ad~VI~a~p~~~l~~~l---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~  317 (479)
T PRK07208        257 VNDTDGTEETVTADQVISSMPLRELVAAL---DPPPPPEVRAAAAGLRYRDFITVGLLVKELNL  317 (479)
T ss_pred             EEcCCCCEEEEEcCEEEECCCHHHHHHhc---CCCCCHHHHHHHhCCCcceeEEEEEEecCCCC
Confidence            3  2353  5899999963 544334432   35566666665567778889999999998753

>PLN02529 lysine-specific histone demethylase 1

Probab=99.94  E-value=8.5e-25  Score=225.98  Aligned_cols=282  Identities=13%  Similarity=0.093  Sum_probs=177.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      ...||+|||||++||+||..|+++|++|+|||+++++||++.|....+                                
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~--------------------------------  206 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR--------------------------------  206 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence            467999999999999999999999999999999999999999976421                                


Q ss_pred             ccCCCCceEEecCCCeEEeeCc--HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                         ....+.+|+ |++|+++..  .+..+..+.|+.-+.. ..  ...++..+|.......+  +.     +    ...+
T Consensus       207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~~~-~~--~~~~~~~~G~~v~~~~~--~~-----~----~~~~  268 (738)
T PLN02529        207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLHKV-RD--NCPLYKPDGALVDKEID--SN-----I----EFIF  268 (738)
T ss_pred             ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcccc-CC--CceEEeCCCcCcchhhh--hh-----H----HHHH
Confidence               001235788 699986543  4666777777643311 11  11133335544321110  00     0    0011


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC------CChhhHHHHHHHHHhccCCcchhhhhhchhhHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~  252 (407)
                      .+++..+..+....         ...+.+.|+.+|+++..      +++..+.++.+.+....+....   .++..    
T Consensus       269 ~~~l~~~~~l~~~~---------~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~---~~s~L----  332 (738)
T PLN02529        269 NKLLDKVTELRQIM---------GGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAG---CLSDL----  332 (738)
T ss_pred             HHHHHHHHHHHHhc---------ccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCC---ChHHh----
Confidence            22222222211100         01245789999997543      5555555555432211111110   11211    


Q ss_pred             HHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       253 ~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+..+....+ +. ..|...++.||++.|+++|++     +..|+||++|++|..+  ++. +.|+ .++++++||+||+
T Consensus       333 Sl~~~~~~~~-~e-~~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VIV  401 (738)
T PLN02529        333 SAAYWDQDDP-YE-MGGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVLC  401 (738)
T ss_pred             hhhHhhhccc-cc-cCCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEEE
Confidence            1122222111 11 113467899999999999875     2359999999999986  333 4565 4566899999996


Q ss_pred             -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                       .|..++.+..+.|.|+||+.+.+..++..+|.+.|+++.|++|||+.
T Consensus       402 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~  449 (738)
T PLN02529        402 TVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGE  449 (738)
T ss_pred             CCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccC
Confidence             47777665557799999999888889999999999999999999954

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.94  E-value=7.4e-25  Score=219.95  Aligned_cols=283  Identities=14%  Similarity=0.188  Sum_probs=174.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      +|||||||++||+||+.|+++|  ++|+|||+++++||+++|++.+|                                 
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g---------------------------------   48 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG---------------------------------   48 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence            6999999999999999999988  89999999999999999976543                                 


Q ss_pred             cCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCH--------HHHhhhccCCh
Q 015413          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL  172 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~~~~l~~  172 (407)
                            +.+|+ |+++++..+ .+.+++.++|+..+..+......+++. +|+.+.+|...        ...+..+.++.
T Consensus        49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~  120 (451)
T PRK11883         49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP  120 (451)
T ss_pred             ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence                  33666 466544433 578889999987654443212234443 67777776421        01111112221


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHH
Q 015413          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (407)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~  252 (407)
                      .++.+.      ......         .......++|+.+|+++. +++...+.+...+....+..++  +++|+...+.
T Consensus       121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~  182 (451)
T PRK11883        121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP  182 (451)
T ss_pred             HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence            111111      001100         001234578999999863 5555544333222222233343  3466655443


Q ss_pred             HHHHHHHhhc-----------ccc-CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC
Q 015413          253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (407)
Q Consensus       253 ~~~~~~~s~~-----------~~~-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~  320 (407)
                      .+..+....+           ... .....+.+++||+++|+++|++.+...  +|++|++|++|..+  ++. +.|.++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~  257 (451)
T PRK11883        183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS  257 (451)
T ss_pred             HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence            3332221111           000 011236689999999999988755332  89999999999876  444 567778


Q ss_pred             CCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCC
Q 015413          321 SGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (407)
Q Consensus       321 ~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~  376 (407)
                      +|+++.||+||+ .|...+.++.  ..|++    ....++..++.+.++.+.|++|+
T Consensus       258 ~g~~~~~d~vI~a~p~~~~~~l~--~~~~~----~~~~~~~~~~~~~~v~l~~~~~~  308 (451)
T PRK11883        258 NGGEIEADAVIVAVPHPVLPSLF--VAPPA----FALFKTIPSTSVATVALAFPESA  308 (451)
T ss_pred             CCCEEEcCEEEECCCHHHHHHhc--cChhH----HHHHhCCCCCceEEEEEEecccc
Confidence            999999999995 4655556653  22332    23335667899999999999996

>PLN02612 phytoene desaturase

Probab=99.94  E-value=2.5e-24  Score=220.43  Aligned_cols=299  Identities=14%  Similarity=0.146  Sum_probs=188.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      ..||+|||+|++||+||+.|+++|++|+|+|+++++||++.+++..                                  
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~----------------------------------  138 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE----------------------------------  138 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence            4689999999999999999999999999999999999999987531                                  


Q ss_pred             cCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEc-cCCcee--e----cCCC---HHHHhh-hcc
Q 015413          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS  169 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~-~~g~~~--~----~p~~---~~~~~~-~~~  169 (407)
                          ..+.+|. |+++++.. ..+.+++.++|+.+.++|......+.+. .++...  .    .|..   ..++++ ...
T Consensus       139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~  213 (567)
T PLN02612        139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM  213 (567)
T ss_pred             ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence                1233666 58877554 3688999999998877776544333221 112221  2    2222   112222 233


Q ss_pred             CChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhh
Q 015413          170 LGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (407)
Q Consensus       170 l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  249 (407)
                      +++.+|.++..-+  ......       ..+...++++.|+.+|+++.+.++.+.+-++..+...-+..++  +++|+..
T Consensus       214 ls~~~kl~~~~~~--~~~~~~-------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p--~~~S~~~  282 (567)
T PLN02612        214 LTWPEKIKFAIGL--LPAIVG-------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINP--DELSMQC  282 (567)
T ss_pred             CCHHHHHHHHHhh--hHHhcc-------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCH--HHhhHHH
Confidence            4444544432211  000000       0011234567899999999999987776333221111122233  3467766


Q ss_pred             HHHHHHHHHHhhccccCCCcceEeecCCc-chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 015413          250 GINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (407)
Q Consensus       250 ~l~~~~~~~~s~~~~~~~~~~~~~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad  328 (407)
                      .+..+..++.  ...+   ....++.|+. ..|+++|++.++..|++|++|++|++|+.+ +++++++|++++|++++||
T Consensus       283 ~l~~l~~~l~--~~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~v~~~~G~~~~ad  356 (567)
T PLN02612        283 ILIALNRFLQ--EKHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELN-DDGTVKHFLLTNGSVVEGD  356 (567)
T ss_pred             HHHHHHHHHh--ccCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEEC-CCCcEEEEEECCCcEEECC
Confidence            5555444422  1222   1255666664 679999999888899999999999999986 3666778888899999999


Q ss_pred             EEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413          329 KLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (407)
Q Consensus       329 ~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~  378 (407)
                      +||+ .|...+..+.....++. +...++ +...+..++++.+.|++||+.
T Consensus       357 ~VI~a~p~~~l~~Ll~~~~~~~-~~~~~l-~~l~~~~v~~v~l~~dr~~~~  405 (567)
T PLN02612        357 VYVSATPVDILKLLLPDQWKEI-PYFKKL-DKLVGVPVINVHIWFDRKLKN  405 (567)
T ss_pred             EEEECCCHHHHHHhCcchhcCc-HHHHHH-HhcCCCCeEEEEEEECcccCC
Confidence            9995 46665555432111111 122222 223467899999999999974

>PLN02676 polyamine oxidase

Probab=99.94  E-value=6.7e-25  Score=220.68  Aligned_cols=285  Identities=11%  Similarity=0.066  Sum_probs=171.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      ..+||||||||++||+||..|+++|. +|+|||+++++||++.+.+..|                               
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g-------------------------------   73 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG-------------------------------   73 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC-------------------------------
Confidence            46899999999999999999999998 6999999999999999865432                               


Q ss_pred             cccCCCCceEEecCCCeEEee-----CcHHHHHHHhcCcccccc-cccccceeeEccCCceeecCCCHHHHhhhccCChH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM  173 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~-----~~~~~~~l~~~g~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~  173 (407)
                              +.+|+ |++++..     ...+.+++.+.|+..+.. +... ...++..+|+..  +.   +...      .
T Consensus        74 --------~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~------~  132 (487)
T PLN02676         74 --------VSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ------K  132 (487)
T ss_pred             --------eEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH------H
Confidence                    34677 5787743     346778888888865532 2221 222333245433  11   1100      0


Q ss_pred             HHHHHHHHHHHHHhhcCCCccccccccccccccCCcH--HHHHHhcC-CChhhHHHHHHHHHhccCCcchhhhhhchhhH
Q 015413          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (407)
Q Consensus       174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (407)
                      -...+..+.+.+.......    .    ..++.+.++  .+++.+.. ....... ..+......+..++  .++|+...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~----~----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~~  201 (487)
T PLN02676        133 SMKVADASDEFGENLSISL----S----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKNT  201 (487)
T ss_pred             HHHHHHHHHHHHHHHHHhh----c----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhhc
Confidence            0011111111111111100    0    112344555  33444322 1211111 11111101012222  22343221


Q ss_pred             HHHHHHHHHhhccccCCCcceEee--cCCcchHHHHHHHHHHh------cCcEEEeCCceeEEEEecCCCcEEEEEeCCC
Q 015413          251 INRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (407)
Q Consensus       251 l~~~~~~~~s~~~~~~~~~~~~~p--~gG~~~l~~al~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G  322 (407)
                             .. ...+...++...+.  ++|++.|+++|++....      .++.|+||++|++|..+  ++. +.|++.+|
T Consensus       202 -------~~-~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~G  270 (487)
T PLN02676        202 -------EP-NPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTEDG  270 (487)
T ss_pred             -------Cc-ccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECCC
Confidence                   10 01111111122343  68999999999875422      23689999999999986  333 57888899


Q ss_pred             cEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       323 ~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                      ++++||+||+ .|..++....+.|+|+||+.+.+..++..||.+.|+++.|++|||+.
T Consensus       271 ~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~  328 (487)
T PLN02676        271 SVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPS  328 (487)
T ss_pred             CEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCC
Confidence            9999999995 57777665446799999999888888899999999999999999975

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.94  E-value=1.2e-25  Score=214.20  Aligned_cols=312  Identities=13%  Similarity=0.056  Sum_probs=176.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      +...||||||+|++||+||+.|.|+|++|+|||+++|+|||+.+.+- + .+|++..|+.                    
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~-~~~~d~gG~~--------------------   62 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-G-GEYTDLGGQY--------------------   62 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-c-ceeeccCCcc--------------------
Confidence            56789999999999999999999999999999999999999999765 2 3454433332                    


Q ss_pred             cccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (407)
                                       +...++.+.....+.|+.........+....+  .+.....|.    .+..   .+.+.+...
T Consensus        63 -----------------i~p~~~~~l~~~k~~gv~~~~fi~~g~~~~~~--~~~~~~~p~----~~~~---~~~d~~~~~  116 (450)
T COG1231          63 -----------------INPTHDALLAYAKEFGVPLEPFIRDGDNVIGY--VGSSKSTPK----RSLT---AAADVRGLV  116 (450)
T ss_pred             -----------------cCccchhhhhhHHhcCCCCCceeccCcccccc--cccccccch----hccc---hhhhhcchh
Confidence                             22244455555555555432111111110000  111111111    1100   011111111


Q ss_pred             -HHHHHHHhhcCCCccccccccccccccCCcHHHH----HHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHH
Q 015413          180 -RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEF----LTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL  254 (407)
Q Consensus       180 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~  254 (407)
                       .+...........+.   ......+.+.+++.+|    ++.+.....++-      ...  ..++  .+++....+.. 
T Consensus       117 ~~~~~~a~~~~~~~~~---~t~~~~e~~~~~~~~W~~~~~~~~~~~~~a~~------~~g--~~~~--~~~~~~~d~~~-  182 (450)
T COG1231         117 AELEAKARSAGELDPG---LTPEDRELDLESLAAWKTSSLRGLSRDPGARV------SPG--PIEP--GDVSLLHDALP-  182 (450)
T ss_pred             hhhhhhhhcccccCcc---cCcchhhhhhHHHHhhhhccccccccCcccee------ccC--CCCc--ccccchhhhhh-
Confidence             111111111111111   0011234455777787    221111111110      000  0111  01111110110 


Q ss_pred             HHHHHhhccccC--CCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          255 ALYNSSIGRFQN--ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       255 ~~~~~s~~~~~~--~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ........+..+  ...+.+.+.|||+.|+++|+   ...|..|.++++|.+|.++ ++|  +.|++.+.+++.||.|||
T Consensus       183 ~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~-~~g--V~Vt~~~~~~~~ad~~i~  256 (450)
T COG1231         183 LRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQD-GDG--VTVTADDVGQYVADYVLV  256 (450)
T ss_pred             hhhhhhccccccccccchhhccCccHHHHHHHHH---HHhhceEEecCceeeEEEc-CCe--EEEEeCCcceEEecEEEE
Confidence            111111212111  11224456699999999997   4678999999999999997 244  578766657899999996


Q ss_pred             -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCC-----------cEEEEeCCCCCCceEEEEe
Q 015413          333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS-----------NFLVIFPPRCKIDSWYFCL  400 (407)
Q Consensus       333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~-----------~~~~~~p~~~~~~~~~~~~  400 (407)
                       .|..++.+  +.|+|+||+.+++..+..+|++..|..+.|++|||.+.+           ...+.+|+..-.++...++
T Consensus       257 tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~  334 (450)
T COG1231         257 TIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLL  334 (450)
T ss_pred             ecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEE
Confidence             46666677  458999999999999999999999999999999995444           3567777774445544444


Q ss_pred             e
Q 015413          401 C  401 (407)
Q Consensus       401 ~  401 (407)
                      +
T Consensus       335 g  335 (450)
T COG1231         335 G  335 (450)
T ss_pred             e
Confidence            4

>TIGR02730 carot_isom carotene isomerase

Probab=99.94  E-value=5.6e-25  Score=222.93  Aligned_cols=297  Identities=15%  Similarity=0.163  Sum_probs=182.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (407)
                      |||||||||++||+||+.|+++|++|+||||++.+||++++++.+|                                  
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG----------------------------------   46 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence            6999999999999999999999999999999999999999987654                                  


Q ss_pred             CCCCceEEecCCCeEEee------CcHHHHHHHhcCccccccccccccee-eEccCCceeecCCCHHHHhhh-ccCChHH
Q 015413          103 QHPRNFNLDVSGPRVLFC------ADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME  174 (407)
Q Consensus       103 ~~~~~~~idl~Gp~~~~~------~~~~~~~l~~~g~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~  174 (407)
                           |.+|. |++++..      ...+.+.|...+.  .+++...+..+ +..++|..+.++.+....... ....+.+
T Consensus        47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~  118 (493)
T TIGR02730        47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE  118 (493)
T ss_pred             -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence                 33444 3554321      2234445554442  24443333222 222356667777765433321 2234677


Q ss_pred             HHHHHHHHHHHHhhcC------CCcc--ccccc----c------ccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccC
Q 015413          175 KNQLMRFFKLVQGHLS------LDES--EENNV----R------ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY  236 (407)
Q Consensus       175 k~~l~~~~~~~~~~~~------~~~~--~~~~~----~------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~  236 (407)
                      ...+.+|++.+++...      ..+.  .....    .      ....+..+++.++++++..++.++.++.........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~  198 (493)
T TIGR02730       119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV  198 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence            7778887766443211      0000  00000    0      011233478899999998999999976532111111


Q ss_pred             CcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEE
Q 015413          237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (407)
Q Consensus       237 ~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (407)
                      ...   ++.+.   +..+..+.  ...++    ..++|.||++.|+++|.+.+++.|++|+++++|++|..+  ++++++
T Consensus       199 ~p~---~~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g  264 (493)
T TIGR02730       199 VPA---DQTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAVG  264 (493)
T ss_pred             CCc---ccchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEEE
Confidence            110   01222   11111111  11122    267899999999999999999999999999999999986  678889


Q ss_pred             EEeCCCcEEEcCEEEEC--CCCCCCCCCccchhhhhhhhhhh-cccCCCceEEEEEEEeCCCCC
Q 015413          317 VRLASGQDILSHKLVLD--PSFTVPGSLASSHQQLQESFQAF-SLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       317 V~~~~G~~i~Ad~VI~~--p~~~~~~~~~~~~p~lp~~~~~~-~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      |++.+|++++||+||++  |..++.++. + ...+|...... .+.....+...+.+.+++++.
T Consensus       265 v~~~~g~~~~ad~vV~a~~~~~~~~~Ll-~-~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~  326 (493)
T TIGR02730       265 VKLADGEKIYAKRIVSNATRWDTFGKLL-K-AENLPKKEKNWQRNYVKSPSFLSLHLGVKADVL  326 (493)
T ss_pred             EEeCCCCEEEcCEEEECCChHHHHHHhC-C-ccccchhhHHHHhhccCCCceEEEEEEecCccC
Confidence            99989999999999964  444444442 1 11233222211 122223456778888887543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.92  E-value=3.5e-23  Score=214.89  Aligned_cols=284  Identities=12%  Similarity=0.103  Sum_probs=174.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      ...||+|||||++||+||+.|++.|++|+|+|+++++||++.+++..+.                               
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~-------------------------------  285 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD-------------------------------  285 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence            3579999999999999999999999999999999999999999876430                               


Q ss_pred             ccCCCCceEEecCCCeEEeeCc--HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                          .-.+.+|+ |+++++...  .+..++.++|+..+. .... .. ++..+|+.+.....  +.         ....+
T Consensus       286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~~-~~~~-~~-~~~~dG~~~~~~~~--~~---------v~~~f  346 (808)
T PLN02328        286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLHK-VRDI-CP-LYLPDGKAVDAEID--SK---------IEASF  346 (808)
T ss_pred             ----CcceeccC-CceeecCCCccHHHHHHHHcCCceEe-cCCC-ce-EEeCCCcCcchhhh--hh---------HHHHH
Confidence                01234677 588886542  566778888875331 1111 11 22235654321100  00         01112


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhc------CCChhhHHHHHHHHHhccCCcchhhhhhchhhHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~  252 (407)
                      .+++..+.++.....   .    .....+.|+.+|++++      ..++..+.++.+.++..-+....   .++.   + 
T Consensus       347 ~~lL~~~~klr~~~~---~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs---~ls~---L-  412 (808)
T PLN02328        347 NKLLDRVCKLRQAMI---E----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS---LMSN---L-  412 (808)
T ss_pred             HHHHHHHHHHHHhhh---h----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh---hHHH---H-
Confidence            233332222111000   0    0112457888888742      23444444443322211111100   0111   1 


Q ss_pred             HHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       253 ~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+..+.... .+ ...+...++.||++.|+++|++.+   +  |++|++|++|..+  ++. +.| +.+|++++||+||+
T Consensus       413 Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~VIv  481 (808)
T PLN02328        413 SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDMVLC  481 (808)
T ss_pred             Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCEEEE
Confidence            111111100 11 111336678999999999998643   3  9999999999986  333 345 35788999999996


Q ss_pred             -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                       .|..++.+..+.|.|+||+.+.+..++..+|.+.|+++.|+++||..
T Consensus       482 TvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~  529 (808)
T PLN02328        482 TVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGG  529 (808)
T ss_pred             CCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccC
Confidence             57777775556789999999888889999999999999999999964

>PLN02568 polyamine oxidase

Probab=99.92  E-value=2.1e-23  Score=211.47  Aligned_cols=300  Identities=10%  Similarity=0.044  Sum_probs=172.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-----CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI   93 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G-----~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (407)
                      ++...||||||||++||+||..|+++|     ++|+|||+++++||+++|.+..+                         
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g-------------------------   56 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGG-------------------------   56 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCC-------------------------
Confidence            456689999999999999999999988     99999999999999999976432                         


Q ss_pred             cccccccccCCCCceEEecCCCeEEee--CcHHHHHHHhcCccccc-ccccccc----eeeEccCCceeecCCCHHHHhh
Q 015413           94 SNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAAIFK  166 (407)
Q Consensus        94 ~~~~~~~~~~~~~~~~idl~Gp~~~~~--~~~~~~~l~~~g~~~~~-~f~~~~~----~~~~~~~g~~~~~p~~~~~~~~  166 (407)
                                    +.+|+ |+++++.  ...+.+++.+.|+.... .|...+.    ...+..+|..+  +.   ++..
T Consensus        57 --------------~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~---~~~~  116 (539)
T PLN02568         57 --------------ERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFEV--DP---SIVE  116 (539)
T ss_pred             --------------eEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcCC--CH---HHHH
Confidence                          34777 5888764  34778888898885442 2222111    11222233211  11   1100


Q ss_pred             hccCChHHHHHHHHHHHHHHhhcCCCccc--cccccc-------cccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCC
Q 015413          167 DKSLGLMEKNQLMRFFKLVQGHLSLDESE--ENNVRI-------SEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD  237 (407)
Q Consensus       167 ~~~l~~~~k~~l~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (407)
                            .-...+..++..+..........  .+...+       .....+.++.+||++.. .+.+.....-... ..+.
T Consensus       117 ------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l-~~~~~~~~~p~~~-~~~~  188 (539)
T PLN02568        117 ------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGL-DAYWDSVSADEQI-KGYG  188 (539)
T ss_pred             ------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHH-HHHHhhcccchhh-cccc
Confidence                  00111122222221110000000  000000       00012347888887411 0000000000000 0000


Q ss_pred             cchhhhhhchhhHHHHHHHHHH-----------hh---ccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCcee
Q 015413          238 QEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI  303 (407)
Q Consensus       238 ~~~~~~~~s~~~~l~~~~~~~~-----------s~---~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~  303 (407)
                      .++  .+.+....+..+..+..           +.   ..+...+|...++.||++.|.++|++.+  .+..|++|++|+
T Consensus       189 ~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V~  264 (539)
T PLN02568        189 GWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLGRKVT  264 (539)
T ss_pred             chh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeEE
Confidence            000  01111111111111110           00   1111112446789999999999998754  356899999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCC----CccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413          304 SLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGS----LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (407)
Q Consensus       304 ~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~----~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~  378 (407)
                      +|..+  ++. +.|++++|++++||+||+ .|..++...    .+.|+|+||+.+.+..++..+|.+.|+++.|++|||.
T Consensus       265 ~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~  341 (539)
T PLN02568        265 RIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDG  341 (539)
T ss_pred             EEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCC
Confidence            99986  443 467788998999999995 576666632    2468999999888888999999999999999999875

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.92  E-value=5.8e-23  Score=206.49  Aligned_cols=298  Identities=17%  Similarity=0.162  Sum_probs=189.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (407)
                      +|+|||||++||+||..|+++|++|+|+|+++++||+++++...                                    
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------   44 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------   44 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence            58999999999999999999999999999999999999986321                                    


Q ss_pred             CCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCcee--------ecC-CCHHHHhhhccCChH
Q 015413          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLC--------SVP-DSRAAIFKDKSLGLM  173 (407)
Q Consensus       104 ~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~--------~~p-~~~~~~~~~~~l~~~  173 (407)
                        ..|.+|. |+++++... .+.+++.+.|+.+.+.+......|.. .+++..        ..| .....+++.+.+++.
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~  120 (474)
T TIGR02732        45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV  120 (474)
T ss_pred             --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence              1344677 588876544 67788888998766555432222322 133321        123 123356666778888


Q ss_pred             HHHHHHHHHHH---HHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhH
Q 015413          174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (407)
Q Consensus       174 ~k~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (407)
                      +|.++......   .+....- .   ...+......++|+.+|+++++.++.+.+.++..+....+..++  +++|+..+
T Consensus       121 dklr~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~  194 (474)
T TIGR02732       121 DKLRNALALGTSPIVRGLVDY-D---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM  194 (474)
T ss_pred             HHHHHHHHhhhhHHHhhcccc-c---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence            88776553311   1111000 0   00011223456999999999999987555444322222223333  35777766


Q ss_pred             HHHHHHHHHhhccccCCCcceEeecCCcch-HHHHHHHHHHhcCcEEEeCCceeEEEEecC-CC--cEEEEEeCCC---c
Q 015413          251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q  323 (407)
Q Consensus       251 l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~~~G---~  323 (407)
                      +..+..+.  .++.+   ....+++||.++ +++.+.+.+++.|++|+++++|++|+.+.. ++  ++++|++.+|   +
T Consensus       195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~  269 (474)
T TIGR02732       195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK  269 (474)
T ss_pred             HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence            55444322  12222   226788999877 678899999999999999999999998621 12  3677777544   5


Q ss_pred             EEEcCEEEE-CCCCCCCCCCccchhhhh---hhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          324 DILSHKLVL-DPSFTVPGSLASSHQQLQ---ESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       324 ~i~Ad~VI~-~p~~~~~~~~~~~~p~lp---~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      ++.||+||+ .|.....++.    |+++   +....+ +......++-+.+-|++|+.
T Consensus       270 ~~~aD~VVlA~p~~~~~~Ll----~~~~~~~~~~~~l-~~l~~~pi~~v~l~~~~~v~  322 (474)
T TIGR02732       270 VIKADAYVAACDVPGIKRLL----PQEWRQFEEFDNI-YKLDAVPVATVQLRYDGWVT  322 (474)
T ss_pred             EEECCEEEECCChHHHHhhC----ChhhhcCHHHhhH-hcCCCCCeEEEEEEeccccc
Confidence            689999995 4665556653    3322   223333 33445678888889987664

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02487 zeta-carotene desaturase

Probab=99.92  E-value=1.2e-22  Score=206.08  Aligned_cols=301  Identities=17%  Similarity=0.158  Sum_probs=189.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      +..+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...                                 
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~---------------------------------  120 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK---------------------------------  120 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence            34699999999999999999999999999999999999999987421                                 


Q ss_pred             ccCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCce------eecCCC---HHHHhhhccC
Q 015413          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKL------CSVPDS---RAAIFKDKSL  170 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~------~~~p~~---~~~~~~~~~l  170 (407)
                           ..+.+|. |+++++... .+.+++.+.|+.+.+.+......|.. .+|..      ++++..   ...+++.+.+
T Consensus       121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~-~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L  193 (569)
T PLN02487        121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVN-KGGDVGELDFRFPVGAPLHGIKAFLTTNQL  193 (569)
T ss_pred             -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEEe-cCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence                 1234666 588776543 78889999999776655432222322 24443      122221   1145556677


Q ss_pred             ChHHHHHHHHHH--H-HHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhch
Q 015413          171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (407)
Q Consensus       171 ~~~~k~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  247 (407)
                      ++.+|.++..-+  . .+....  .+.  ...+......+.|+.+|+++++.++++.+-++..+....+..++  +++|+
T Consensus       194 s~~dklr~~~~l~~~~~~~al~--~~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA  267 (569)
T PLN02487        194 EPYDKARNALALATSPVVRALV--DPD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA  267 (569)
T ss_pred             CHHHHHhhcccccccchhhhcc--Ccc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence            777776653211  1 011110  000  00011223456999999999988875555444333332233343  45787


Q ss_pred             hhHHHHHHHHHHhhccccCCCcceEeecCCcch-HHHHHHHHHHhcCcEEEeCCceeEEEEecC-CC--cEEEEEe---C
Q 015413          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A  320 (407)
Q Consensus       248 ~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~---~  320 (407)
                      ..++..+..+.  ... .  .+...|++||.++ |++.+++.++..||+|+++++|++|+.+.+ ++  ++++|++   .
T Consensus       268 ~~~~~vl~~~~--~~~-~--~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~  342 (569)
T PLN02487        268 RCMLTIFSLFA--TKT-E--ASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT  342 (569)
T ss_pred             HHHHHHHHHHh--hcC-C--cceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence            76665553221  111 1  1226799999995 999999999999999999999999998621 22  3778887   3


Q ss_pred             CCcEEEcCEEEE-CCCCCCCCCCccchhhhhhh---hhhhcccCCCceEEEEEEEeCCCCC
Q 015413          321 SGQDILSHKLVL-DPSFTVPGSLASSHQQLQES---FQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       321 ~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~---~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      +++++.||+||+ .|...+.++.    |+.+..   ...+. ....-.++-+.+-||+|+.
T Consensus       343 ~~~~~~aD~VV~A~p~~~~~~Ll----p~~~~~~~~~~~l~-~L~~~pi~tv~L~~d~~v~  398 (569)
T PLN02487        343 EKEIVKADAYVAACDVPGIKRLL----PEQWREYEFFDNIY-KLVGVPVVTVQLRYNGWVT  398 (569)
T ss_pred             CceEEECCEEEECCCHHHHHHhC----CchhhccHHHhHHh-cCCCeeEEEEEEEeccccc
Confidence            455789999995 3555556653    332222   33442 2224556667778887764

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.92  E-value=3.4e-23  Score=201.96  Aligned_cols=283  Identities=17%  Similarity=0.206  Sum_probs=182.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      .|+|||||++||+||++|+|+|  ..|+|||+.+++||...|++.+|                                 
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G---------------------------------   48 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG---------------------------------   48 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC---------------------------------
Confidence            4899999999999999999999  99999999999999999986654                                 


Q ss_pred             cCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHH
Q 015413          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~  180 (407)
                            |.+|. ||+.++.. ..+++++.++|.++.+.+......|++. +|+++++|...  ++.-+.+...+...+.+
T Consensus        49 ------~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~  118 (444)
T COG1232          49 ------FLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR  118 (444)
T ss_pred             ------EEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence                  44677 57766555 5788999999999998887666566665 89999999863  33333222212233333


Q ss_pred             HHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHH----
Q 015413          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL----  256 (407)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~----  256 (407)
                      ++........           .....+.++.+|++++ +.+++.+.+...+.-.-|..+.  +++|+..+...+..    
T Consensus       119 ~~~~~~~~~~-----------~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~~  184 (444)
T COG1232         119 ALQEFIRPKS-----------WEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAERK  184 (444)
T ss_pred             HHHhhhcccC-----------CCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence            3322211100           1235678999999854 3444444222211111133332  34776622222111    


Q ss_pred             HHHhh-c--ccc--C---CCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 015413          257 YNSSI-G--RFQ--N---ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (407)
Q Consensus       257 ~~~s~-~--~~~--~---~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad  328 (407)
                      |...+ +  +-+  +   ..+.+.+++||+++++++|++.+...   |+++++|++|..+  ... +++.+.+|.++.||
T Consensus       185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~D  258 (444)
T COG1232         185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITAD  258 (444)
T ss_pred             hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEcc
Confidence            11110 0  000  0   11347789999999999999876655   9999999999986  332 35556789999999


Q ss_pred             EEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCC
Q 015413          329 KLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS  375 (407)
Q Consensus       329 ~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p  375 (407)
                      .||+ .|.+.+.++.    ++ .+....+ ....+-+++.+++.++++
T Consensus       259 ~VI~t~p~~~l~~ll----~~-~~~~~~~-~~~~~~s~~~vv~~~~~~  300 (444)
T COG1232         259 GVISTAPLPELARLL----GD-EAVSKAA-KELQYTSVVTVVVGLDEK  300 (444)
T ss_pred             eEEEcCCHHHHHHHc----CC-cchhhhh-hhccccceEEEEEEeccc
Confidence            9995 5766666654    22 1122222 333466788889999986

>PLN03000 amine oxidase

Probab=99.91  E-value=1.5e-22  Score=210.12  Aligned_cols=283  Identities=13%  Similarity=0.098  Sum_probs=169.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      ...||||||||++||+||..|++.|++|+|+|+++++||++.|.+..+                                
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g--------------------------------  230 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA--------------------------------  230 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence            457999999999999999999999999999999999999999987543                                


Q ss_pred             ccCCCCceEEecCCCeEEeeCc--HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~~--~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                         ....+.+|+ |++|++...  .+..++.++|+.-+ .+......|  ..+|+..  |.+....+         ...+
T Consensus       231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~ly--~~~Gk~v--~~~~~~~v---------e~~f  292 (881)
T PLN03000        231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCPLY--RVDGKPV--DPDVDLKV---------EVAF  292 (881)
T ss_pred             ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCeEE--EeCCcCC--chhhhhhH---------HHHH
Confidence               012356888 589986654  45566778887633 222222222  2366543  21110000         0111


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHh------cCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~  252 (407)
                      ..++..+.++.....         ....+.++.++++.      ..+.++.+.++.+.+....+....   .++.   + 
T Consensus       293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as---~ls~---L-  356 (881)
T PLN03000        293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG---LVSK---L-  356 (881)
T ss_pred             HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc---CHHH---H-
Confidence            122222111110000         00112334333221      122333333332221111011000   0111   1 


Q ss_pred             HHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       253 ~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+..+.... .+. ..+...+++||++.|+++|++.+     .|+++++|++|.++  ++. +.|++ +++++.||+||+
T Consensus       357 Sl~~wdqd~-~~e-~~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv  425 (881)
T PLN03000        357 SLAFWDQDD-PYD-MGGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC  425 (881)
T ss_pred             HHHHhhhcc-ccc-CCCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence            111111100 111 11336678999999999998643     39999999999986  333 45664 446899999996


Q ss_pred             -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC
Q 015413          333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL  380 (407)
Q Consensus       333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~  380 (407)
                       .|..++....+.|.|+||+.+.+..++..+|.+.|+++.|+++||+..
T Consensus       426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d  474 (881)
T PLN03000        426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTD  474 (881)
T ss_pred             cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCC
Confidence             587777754577999999998888899999999999999999999643

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.91  E-value=1.3e-22  Score=201.60  Aligned_cols=278  Identities=15%  Similarity=0.150  Sum_probs=177.7

Q ss_pred             HHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccCCCCceEEecCCC
Q 015413           36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP  115 (407)
Q Consensus        36 ~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idl~Gp  115 (407)
                      +||+.|+++|++|+|||+++++||+++|++.++.                                     .+.+|. |+
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~   42 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ   42 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence            4899999999999999999999999999875431                                     123677 58


Q ss_pred             eEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCce-------eecCCCH-HHHhhhccCChHHHHHHHHHHHHHH
Q 015413          116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-------CSVPDSR-AAIFKDKSLGLMEKNQLMRFFKLVQ  186 (407)
Q Consensus       116 ~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~-------~~~p~~~-~~~~~~~~l~~~~k~~l~~~~~~~~  186 (407)
                      ++++.. ..+.+++.++|+.....+.. ....++..++..       .+.|... ..+...+.+++.++.++.+++..+.
T Consensus        43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  121 (419)
T TIGR03467        43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR  121 (419)
T ss_pred             EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            887654 47888899999887765422 222222223331       1122211 1223445677777777766554333


Q ss_pred             hhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccC
Q 015413          187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN  266 (407)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~  266 (407)
                      ...            ..++.++|+.+|+++++.++.+.+.+...+....+..++  +++|+..++..+..   .+.....
T Consensus       122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~  184 (419)
T TIGR03467       122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA  184 (419)
T ss_pred             hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence            211            123467899999999888887777544322222233444  34676554443322   1111111


Q ss_pred             CCcceEeecCCcchHH-HHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCcc
Q 015413          267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLAS  344 (407)
Q Consensus       267 ~~~~~~~p~gG~~~l~-~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~  344 (407)
                       ...+.||+||++++. ++|++.+++.|++|++|++|++|..+  ++++..+...+|+++.||+||+ .|...+.++.  
T Consensus       185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll--  259 (419)
T TIGR03467       185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL--  259 (419)
T ss_pred             -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC--
Confidence             122789999998876 55888888889999999999999986  4543322224788899999995 4666656542  


Q ss_pred             chhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413          345 SHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (407)
Q Consensus       345 ~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~  378 (407)
                        |+ + ...+..+...++.+.++.+.+++|+|.
T Consensus       260 --~~-~-~~~~~l~~~~~~~~~~v~l~~~~~~~~  289 (419)
T TIGR03467       260 --PG-E-DLGALLTALGYSPITTVHLRLDRAVRL  289 (419)
T ss_pred             --CC-c-hHHHHHhhcCCcceEEEEEEeCCCcCC
Confidence              21 1 233334566789999999999999963

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=7.9e-22  Score=196.75  Aligned_cols=114  Identities=16%  Similarity=0.075  Sum_probs=89.1

Q ss_pred             eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhh
Q 015413          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQL  349 (407)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~l  349 (407)
                      .....+|+..+.++++.     |..|+++..|.+|.+.. ++. +.|++.++..+.||+||+ .|-.++..-.+.|+|+|
T Consensus       211 ~~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L  283 (501)
T KOG0029|consen  211 HLLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL  283 (501)
T ss_pred             hhHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCC
Confidence            45678999999887764     89999999999999972 443 345555666699999884 67776666557799999


Q ss_pred             hhhhhhhcccCCCceEEEEEEEeCCCCCCCCCcEEEEeCCCC
Q 015413          350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRC  391 (407)
Q Consensus       350 p~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~~~~~~p~~~  391 (407)
                      |..+++..++...|.+.|+++.|++.||........+.|...
T Consensus       284 p~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~  325 (501)
T KOG0029|consen  284 PRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETS  325 (501)
T ss_pred             cHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccc
Confidence            999999999999999999999999999953333444444444

>PLN02976 amine oxidase

Probab=99.88  E-value=3.9e-21  Score=204.61  Aligned_cols=106  Identities=12%  Similarity=0.027  Sum_probs=85.5

Q ss_pred             cceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecC-------CCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 015413          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (407)
Q Consensus       269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-------~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~  340 (407)
                      |..++++||++.|+++|++.+     .|+||++|++|.+...       ++.-+.|++.+|+++.||+||+ .|..++..
T Consensus       926 G~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976        926 GAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred             CceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh
Confidence            346679999999999998643     4999999999988410       1122567788999999999996 47666664


Q ss_pred             CCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          341 SLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       341 ~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                      -.+.|+|+||+.+.+..++..||.+.|+++.|++|||+.
T Consensus      1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~ 1039 (1713)
T PLN02976       1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDD 1039 (1713)
T ss_pred             cccccCCcccHHHHHHHHhhccccceEEEEEeCCccccC
Confidence            346799999999888888999999999999999999964

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.85  E-value=3.3e-21  Score=181.61  Aligned_cols=81  Identities=35%  Similarity=0.431  Sum_probs=68.2

Q ss_pred             cceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC--CCCCCCCCCccch
Q 015413          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD--PSFTVPGSLASSH  346 (407)
Q Consensus       269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~--p~~~~~~~~~~~~  346 (407)
                      +.+.||+|||++|+.++++.+++.|++|.+++.|++|..|  +|+++||+++||++++++.||+|  |-.++.++..  .
T Consensus       254 g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp--~  329 (561)
T KOG4254|consen  254 GGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP--G  329 (561)
T ss_pred             CcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC--C
Confidence            4488999999999999999999999999999999999998  79999999999999999999964  5555555431  2


Q ss_pred             hhhhhhh
Q 015413          347 QQLQESF  353 (407)
Q Consensus       347 p~lp~~~  353 (407)
                      -.||++.
T Consensus       330 e~LPeef  336 (561)
T KOG4254|consen  330 EALPEEF  336 (561)
T ss_pred             ccCCchh
Confidence            2466663

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.78  E-value=9.4e-18  Score=160.33  Aligned_cols=110  Identities=15%  Similarity=0.046  Sum_probs=81.4

Q ss_pred             eEeecCCcchHHHHHHHHHH----hcC--cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCC-CC
Q 015413          271 LIYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPG-SL  342 (407)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~----~~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~-~~  342 (407)
                      .....-|...+..-|.+.+.    ++|  ++++++++|.+|..+ ++++ +.|++.||+.+.||+|||+ +--++.+ -.
T Consensus       215 ~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~-~~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~  292 (498)
T KOG0685|consen  215 LIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK-NTGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHH  292 (498)
T ss_pred             heechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC-CCCc-EEEEEeCCcEEeccEEEEEeechhhhhhhh
Confidence            33445567777776655332    233  556667999999986 3566 4789999999999999964 4444432 11


Q ss_pred             ccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCCc
Q 015413          343 ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSN  382 (407)
Q Consensus       343 ~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~  382 (407)
                      .-|+|+||+.++...++...|.+-|..+=|++||||..-.
T Consensus       293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~  332 (498)
T KOG0685|consen  293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWN  332 (498)
T ss_pred             hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCc
Confidence            2379999999999999999999999999999999986433

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.77  E-value=8.8e-17  Score=160.76  Aligned_cols=242  Identities=12%  Similarity=0.178  Sum_probs=145.1

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccc
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI   93 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (407)
                      ...+..+|+|||||++||+||.+|++.    |++|+|||+++++||++.+.....                         
T Consensus        18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~-------------------------   72 (576)
T PRK13977         18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE-------------------------   72 (576)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc-------------------------
Confidence            344557999999999999999999996    689999999999999998754211                         


Q ss_pred             cccccccccCCCCceEEecCCCeEEeeCcHHHHHHHhc------C---ccccccccccccee---e-EccCCceeecCCC
Q 015413           94 SNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF---M-LDADAKLCSVPDS  160 (407)
Q Consensus        94 ~~~~~~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~------g---~~~~~~f~~~~~~~---~-~~~~g~~~~~p~~  160 (407)
                                  ..|.++. |+.....-..+.++|.+.      |   .++|..+...++.+   . +..+|..+..   
T Consensus        73 ------------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~---  136 (576)
T PRK13977         73 ------------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDT---  136 (576)
T ss_pred             ------------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEEC---
Confidence                        1233444 354322223555665433      1   23556665555442   1 1112322222   


Q ss_pred             HHHHhhhccCChHHHH--HHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCc
Q 015413          161 RAAIFKDKSLGLMEKN--QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQ  238 (407)
Q Consensus       161 ~~~~~~~~~l~~~~k~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (407)
                             ..+.+..|.  .|.+++   ...             ..+..+.++.||+++..+....-. +  ...+.++. 
T Consensus       137 -------~~~~L~~k~r~~Ll~l~---l~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~-~--w~t~FaF~-  189 (576)
T PRK13977        137 -------DKFGLSKKDRKELLKLL---LTP-------------EEKLDDKTIEDWFSPEFFETNFWY-Y--WRTMFAFE-  189 (576)
T ss_pred             -------cCCCCCHHHHHHHHHHh---ccC-------------HHHhCCcCHHHHHhhcCchhHHHH-H--HHHHHCCc-
Confidence                   223333333  333322   111             123567899999997555432222 1  11222222 


Q ss_pred             chhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCC-cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCC--CcEE
Q 015413          239 EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYK  315 (407)
Q Consensus       239 ~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~--g~~~  315 (407)
                          +..|+......+.+|+.-+...... .++.+.+|- ...|.+.|.+.+++.|++|+++++|++|..+.++  ++++
T Consensus       190 ----~whSA~E~rry~~rf~~~~~~l~~~-s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~Vt  264 (576)
T PRK13977        190 ----KWHSALEMRRYMHRFIHHIGGLPDL-SGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTAT  264 (576)
T ss_pred             ----hhhHHHHHHHHHHHHHHhhccCCcc-ccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEE
Confidence                2467877777777776544443321 123344443 4789999999999999999999999999984113  6788


Q ss_pred             EEEeC-CCc--E---EEcCEEEE
Q 015413          316 GVRLA-SGQ--D---ILSHKLVL  332 (407)
Q Consensus       316 gV~~~-~G~--~---i~Ad~VI~  332 (407)
                      +|.+. +|+  +   ..+|.||+
T Consensus       265 gI~~~~~~~~~~I~l~~~DlViv  287 (576)
T PRK13977        265 AIHLTRNGKEETIDLTEDDLVFV  287 (576)
T ss_pred             EEEEEeCCceeEEEecCCCEEEE
Confidence            88764 332  2   36788883

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.77  E-value=1e-18  Score=173.46  Aligned_cols=98  Identities=17%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhh
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAF  356 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~  356 (407)
                      .+.+...++..+...|++|++|++|++|..+  ++++ .|.+.+|++++||+||+ .|...+.+  +.+.|++|..+...
T Consensus       208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a  282 (450)
T PF01593_consen  208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA  282 (450)
T ss_dssp             TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred             ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence            3444444455566778899999999999997  5664 67789999999999995 46666555  34789999966665


Q ss_pred             cccCCCceEEEEEEEeCCCCCCCC
Q 015413          357 SLSDNKGKVARGICITRSSLKPDL  380 (407)
Q Consensus       357 ~~~~~~g~~~k~i~i~~~p~~~~~  380 (407)
                      .+...+..+.|+++.++++||+..
T Consensus       283 ~~~~~~~~~~~v~l~~~~~~~~~~  306 (450)
T PF01593_consen  283 IENLPYSSVSKVFLGFDRPFWPPD  306 (450)
T ss_dssp             HHTEEEEEEEEEEEEESSGGGGST
T ss_pred             ccccccCcceeEEEeeeccccccc
Confidence            588889999999999999999753

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.75  E-value=1.8e-16  Score=145.54  Aligned_cols=289  Identities=15%  Similarity=0.100  Sum_probs=162.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      ..+|.|||+|++||+||..|++. ++|+++|+++|+||+++|...+-                                 
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~---------------------------------   53 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT---------------------------------   53 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence            46899999999999999999976 89999999999999999975321                                 


Q ss_pred             cCCCCceEEecCCCeEEeeC---cHHHHHHHhcCcccccccccccceeeEccCCceeecCC--CHHHHhhh--ccCChHH
Q 015413          102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD--SRAAIFKD--KSLGLME  174 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~~---~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~l~~~~  174 (407)
                        ....+.+|. | .+++..   ..+.++|.+.|++....+-+..-  .+  |+.-+++..  ....++..  ..+.+  
T Consensus        54 --d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~--d~gglEy~g~tgl~~L~aqk~n~l~p--  123 (447)
T COG2907          54 --DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SL--DMGGLEYSGLTGLAGLLAQKRNLLRP--  123 (447)
T ss_pred             --cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Ee--cCCceeeccCCCccchhhccccccch--
Confidence              011233554 2 333222   26888999999876544432110  11  222222221  11123321  11111  


Q ss_pred             HHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHH--HhccCCcchhhhhhchhhHHH
Q 015413          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI--AMADYDQEVSEYVLKTRDGIN  252 (407)
Q Consensus       175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~l~  252 (407)
                        ++.++++.+...........   + .....+.++.+||++.+.+...++-+++-+  +..+....    +++...+ .
T Consensus       124 --Rf~~mlaeiLrf~r~~~~~~---d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa-~  192 (447)
T COG2907         124 --RFPCMLAEILRFYRSDLAPS---D-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPA-C  192 (447)
T ss_pred             --hHHHHHHHHHHHhhhhccch---h-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhH-H
Confidence              22222222222111100000   1 123457899999999999988887555422  22221111    1222221 1


Q ss_pred             HHHHHHHhhccccCCCcc-eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413          253 RLALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (407)
Q Consensus       253 ~~~~~~~s~~~~~~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (407)
                      .+..|....|-..-.+.+ +..+.||+.+-.+.|   ++..+++|+++++|.+|..-+ +|.  .|+..+|++-+.|+||
T Consensus       193 ~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~l---aa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vV  266 (447)
T COG2907         193 NFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRL---AADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVV  266 (447)
T ss_pred             HHHHHHhccCceecCCCCceeEcccchHHHHHHH---hccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceee
Confidence            222333322221111123 445789998888755   467889999999999998863 553  3444679999999988


Q ss_pred             --ECCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          332 --LDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       332 --~~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                        +.|+..+.-+.   +| -|++.+ +.+.. -.+..++++-.|..+.
T Consensus       267 iAth~dqAl~mL~---e~-sp~e~q-ll~a~-~Ys~n~aVlhtd~~lm  308 (447)
T COG2907         267 IATHPDQALALLD---EP-SPEERQ-LLGAL-RYSANTAVLHTDASLM  308 (447)
T ss_pred             eecChHHHHHhcC---CC-CHHHHH-HHHhh-hhhhceeEEeeccccc
Confidence              46877643321   23 355655 43444 3456677888887553

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.70  E-value=1.7e-15  Score=142.86  Aligned_cols=295  Identities=18%  Similarity=0.186  Sum_probs=175.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEE--EccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~Vlv--lE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      ..+|+|+|||++||+||++|++.+-+|+|  +|+.+|+||..+|...+                                
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~--------------------------------   58 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ--------------------------------   58 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence            36899999999999999999999987654  99999999999983221                                


Q ss_pred             cccCCCCceEEecCCCeEEeeCc----HHHHHHHhcCcccccccccccc-----eeeEccCCceeecCCCHHHHhhhccC
Q 015413          100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLEFKSIDA-----TFMLDADAKLCSVPDSRAAIFKDKSL  170 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~~~----~~~~~l~~~g~~~~~~f~~~~~-----~~~~~~~g~~~~~p~~~~~~~~~~~l  170 (407)
                            +.|-++. ||.-+...+    ...+++.++|+++.+.-.+...     +|++ +.|++..+|.+...... ..+
T Consensus        59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~-~~l  129 (491)
T KOG1276|consen   59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLK-FSL  129 (491)
T ss_pred             ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCcccccccc-ccc
Confidence                  1222334 455442222    5788899999986544322221     3444 37889899986543111 112


Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhH
Q 015413          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (407)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (407)
                      .+.-|..+..|+....+...           .....|+++.+|.++. +.+++.+.+...+..+-|+.|+  .++|....
T Consensus       130 ~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~--~~LSmk~~  195 (491)
T KOG1276|consen  130 QPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRR-FGKEVADRLISPFIRGIYAGDP--SELSMKSS  195 (491)
T ss_pred             CcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCCh--HHhhHHHH
Confidence            23344444444432211100           1124578999999852 3367777666554444567776  45888766


Q ss_pred             HHHHHHHHHhhcc---------cc--------------CCCc--ceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEE
Q 015413          251 INRLALYNSSIGR---------FQ--------------NALG--ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL  305 (407)
Q Consensus       251 l~~~~~~~~s~~~---------~~--------------~~~~--~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I  305 (407)
                      +..+.......|.         +.              ....  +.+-.+||+..++++|++.+......|.++-++.-+
T Consensus       196 F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~  275 (491)
T KOG1276|consen  196 FGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGN  275 (491)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccc
Confidence            6555432222220         00              0001  134579999999999999988888888999999888


Q ss_pred             EEecCCCcEEEEEeCCCcE-EEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCC
Q 015413          306 LTDQNSGSYKGVRLASGQD-ILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS  375 (407)
Q Consensus       306 ~~~~~~g~~~gV~~~~G~~-i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p  375 (407)
                      ....+++-..+.+..+++. ...+++.+ -|...+..+.    |++.+.........++-.++-++.-|.++
T Consensus       276 sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll----~~~~~sls~~L~ei~y~~V~vVn~~yp~~  343 (491)
T KOG1276|consen  276 SKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLL----RGLQNSLSNALSEIPYVPVAVVNTYYPKE  343 (491)
T ss_pred             cccccCCceeEeEcCCCceeeeccccccccchHHhhhhc----cccchhhhhhhhcCCCCceEEEEEeccCc
Confidence            7653233223333344432 23333332 2433334432    34444444444455677788888888885

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=1e-13  Score=135.32  Aligned_cols=293  Identities=16%  Similarity=0.112  Sum_probs=158.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (407)
                      .|+|+|||++||+||..|+++|++|+|+|+++++||++.++....        |.+                        
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d--------g~~------------------------   49 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD--------GNH------------------------   49 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC--------CCe------------------------
Confidence            599999999999999999999999999999999999999976432        111                        


Q ss_pred             CCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEc--cCCce--eecCCC------HHHHhhhccCCh
Q 015413          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLD--ADAKL--CSVPDS------RAAIFKDKSLGL  172 (407)
Q Consensus       104 ~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~--~~g~~--~~~p~~------~~~~~~~~~l~~  172 (407)
                            .+. |=++++..- .++.+|.+.+.+..+.++.....++-.  ..|.+  ++.|..      ..+.++.+.+..
T Consensus        50 ------~E~-glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~  122 (485)
T COG3349          50 ------VEH-GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR  122 (485)
T ss_pred             ------eee-eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence                  111 334444332 678888888887666665543333211  11221  111111      112223333333


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHH-HHHHhccCCcchhhhhhchhhH
Q 015413          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDG  250 (407)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~  250 (407)
                      .+|..+   +-.+.....      .......+.++.++.+||++.+....... .+. .+.++. +. ++  +..|+...
T Consensus       123 ~~~~~~---~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~-f~-~~--e~~sa~~~  189 (485)
T COG3349         123 REKIRF---VLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALT-FI-DP--EGCSARFF  189 (485)
T ss_pred             HHHhHH---hhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhc-cc-Cc--ccCcchhH
Confidence            333322   111000000      00122446778999999998776644332 221 111221 11 11  23455443


Q ss_pred             HHHHHHHHHhhccccCCCcceEeecCCcch-HHHHHHHHHHhcCcEEEeCCceeEEEEec--CCCcEEEEEeCCCcEEEc
Q 015413          251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDILS  327 (407)
Q Consensus       251 l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~--~~g~~~gV~~~~G~~i~A  327 (407)
                      +..+..+  ++...+.  ......+|+..+ +.+...+.+.+.|.+++++.+|+.|..+.  ++.+++|+.+. +....+
T Consensus       190 lt~~~~~--~~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~  264 (485)
T COG3349         190 LTILNLF--LIVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQ  264 (485)
T ss_pred             HHHHHHH--HHhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEe
Confidence            3333222  1222111  113346777554 44666777888999999999999998862  13446788765 666666


Q ss_pred             CEEE--ECCCCCCCCCCc--cchhhhhhhhhhhcccCCCceEEEEEEEeCCC
Q 015413          328 HKLV--LDPSFTVPGSLA--SSHQQLQESFQAFSLSDNKGKVARGICITRSS  375 (407)
Q Consensus       328 d~VI--~~p~~~~~~~~~--~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p  375 (407)
                      .+++  ..+.. ++++..  +++-+-.+..+.+... ..-.+++..+.++.-
T Consensus       265 ~~~~~~~~~~~-v~~~~~~~ps~W~~~~~f~~ly~l-~~~p~~~~~l~~~~~  314 (485)
T COG3349         265 QAALAVVDAFA-VQRFKRDLPSEWPKWSNFDGLYGL-RLVPVITLHLRFDGW  314 (485)
T ss_pred             eehhhhhcccc-cchHhhcCcccccccccccccccc-cccceeEEEEeecCc
Confidence            6555  23322 243211  1111112223333222 245678888888863

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.47  E-value=2.7e-12  Score=124.35  Aligned_cols=43  Identities=26%  Similarity=0.428  Sum_probs=40.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~   64 (407)
                      ++||+|||||++||++|..|++.|++|+|+|+++++||.+.+.
T Consensus         1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~   43 (377)
T TIGR00031         1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE   43 (377)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence            3799999999999999999999999999999999999987764

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.41  E-value=5.5e-13  Score=96.86  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=38.5

Q ss_pred             EECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhh
Q 015413           27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (407)
Q Consensus        27 VIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~   68 (407)
                      |||||++||+||+.|+++|++|+|+|+++++||++.+...++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g   42 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG   42 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECC
Confidence            899999999999999999999999999999999999986543

...

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.36  E-value=1.5e-11  Score=116.38  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             eEeec-CCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++|. ...+.|.++|.+.+++.|++|+++++|.+|..+  + ....|.+.+|++++||.+|+
T Consensus       102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081         102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence            45777 789999999999999999999999999999986  3 33578888888999999883

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.30  E-value=3.9e-11  Score=116.18  Aligned_cols=60  Identities=30%  Similarity=0.409  Sum_probs=52.1

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      ++.+.+|   ...+.++|.+.++..|++|+.+++|++|..+  ++++.+|++.+|+ ++||+||..
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a  198 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA  198 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence            5678888   7899999999999999999999999999997  7888789998887 999999943

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.22  E-value=8.4e-11  Score=107.63  Aligned_cols=100  Identities=20%  Similarity=0.377  Sum_probs=71.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      ++|.+|||||++|++.|..|++.|++|+|+|||+.+||.+-+...+.       .|             +.         
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~-------tG-------------Il---------   51 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ-------TG-------------IL---------   51 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC-------CC-------------eE---------
Confidence            48999999999999999999999999999999999999998864321       00             11         


Q ss_pred             cCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHH
Q 015413          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA  163 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~  163 (407)
                              +.-.||++++..+ ..++.+.     ++.+|..-.....-..+|..+.+|.+...
T Consensus        52 --------vHkYGpHIFHT~~~~Vwdyv~-----~F~e~~~Y~hrVla~~ng~~~~lP~nl~t  101 (374)
T COG0562          52 --------VHKYGPHIFHTDNKRVWDYVN-----QFTEFNPYQHRVLALVNGQLYPLPFNLNT  101 (374)
T ss_pred             --------EeeccCceeecCchHHHHHHh-----hhhhhhhhccceeEEECCeeeeccccHHH
Confidence                    1112799998777 4555543     34555554333321228899999987643

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.19  E-value=6e-10  Score=108.69  Aligned_cols=60  Identities=22%  Similarity=0.342  Sum_probs=49.0

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEE
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~Ad~VI~  332 (407)
                      .+.|.+|   .++++.+|++.+...|++++||++|+.|+.+. +| ++.+.+.+|++ ++|+.||.
T Consensus       142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin  205 (429)
T COG0579         142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVIN  205 (429)
T ss_pred             EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEE
Confidence            4556666   57889999999999999999999999999872 43 45566778877 99999994

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.18  E-value=1e-10  Score=114.85  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             eEeecC-CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..||.- -..++.++|.+.+.+.|++|+++++|++|+.+  ++.+..|++.+++++.||+||+
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence            467766 47899999999999999999999999999987  6666789876888999999994

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.14  E-value=1.2e-09  Score=107.91  Aligned_cols=58  Identities=19%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.+.+|   ...+.++|.+.++..|++++++++|++|..+  ++. +.|++.+| +++||+||+
T Consensus       138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~  198 (393)
T PRK11728        138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLIN  198 (393)
T ss_pred             EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEE
Confidence            4456666   3788899999999999999999999999875  444 46776666 799999994

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.11  E-value=6e-09  Score=104.98  Aligned_cols=57  Identities=25%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.+.+|.   ..+.++|++.+...|++|+.+++|++|..   ++. +.|++.+| +++||+||+
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t~~g-~v~A~~VV~  231 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQP-AVVRTPDG-QVTADKVVL  231 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCc-eEEEeCCc-EEECCEEEE
Confidence            55666663   57889999999999999999999999964   232 46776666 699999884

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.04  E-value=3.7e-09  Score=103.75  Aligned_cols=58  Identities=21%  Similarity=0.179  Sum_probs=43.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++.+.+|.   ..+.++|.+.++..|++++.+++|++|..+  ++. +.|+++++ ++.||+||+
T Consensus       134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~  194 (380)
T TIGR01377       134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV  194 (380)
T ss_pred             EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence            34455552   467788888888899999999999999875  454 45776555 799999883

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.02  E-value=8.8e-09  Score=104.04  Aligned_cols=57  Identities=30%  Similarity=0.370  Sum_probs=46.2

Q ss_pred             ecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEE
Q 015413          274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVL  332 (407)
Q Consensus       274 p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G--~~i~Ad~VI~  332 (407)
                      +.+|...+.+.|.+.+++.|++|+++++|++|..+  ++++++|.+.  +|  .+++|+.||+
T Consensus       126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIl  186 (466)
T PRK08274        126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVL  186 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEE
Confidence            44556778899999999999999999999999886  7888888753  23  3589999994

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.99  E-value=3e-08  Score=101.93  Aligned_cols=44  Identities=30%  Similarity=0.494  Sum_probs=40.3

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ....++||||||+| +|++||...+++|.+|+||||.+.+||.+.
T Consensus        12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            44568999999999 999999999999999999999999999765

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.98  E-value=7.2e-09  Score=101.57  Aligned_cols=60  Identities=27%  Similarity=0.227  Sum_probs=44.4

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p  334 (407)
                      .+.+.+|.   ..+.+++.+.+...|++++++++|++|..+  ++. +.|++++| +++||+|| +..
T Consensus       138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~A~G  201 (376)
T PRK11259        138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVVSAG  201 (376)
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEEecC
Confidence            34455553   456677777777899999999999999875  444 46777666 79999999 443

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.98  E-value=1.1e-08  Score=104.97  Aligned_cols=61  Identities=25%  Similarity=0.218  Sum_probs=45.8

Q ss_pred             ceEeecCC--cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 015413          270 ALIYPIYG--QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL  332 (407)
Q Consensus       270 ~~~~p~gG--~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G--~~i~Ad~VI~  332 (407)
                      +++++.|-  -..+..++++.+..+|++++.+++|++|..+  ++++++|++.   +|  .+|+|++||.
T Consensus       138 a~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn  205 (546)
T PRK11101        138 AVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN  205 (546)
T ss_pred             EEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence            35566421  2467778888888999999999999999886  6777788753   23  3689999994

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.97  E-value=1.8e-08  Score=100.03  Aligned_cols=51  Identities=20%  Similarity=0.289  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+..+|++.+...|++++.+++|++|+.+ +++++++|++.+| ++.|++||+
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVv  234 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGV  234 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEE
Confidence            56677888889999999999999999754 2566677887666 699999874

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.96  E-value=6.6e-08  Score=98.50  Aligned_cols=41  Identities=20%  Similarity=0.409  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|.+||+||+.++++|.+|+||||....||..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            47899999999999999999999999999999999999854

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.93  E-value=7.3e-10  Score=96.99  Aligned_cols=42  Identities=14%  Similarity=0.230  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ++||+|||||.+||+||++|+++|+||+++|++..+||..+.
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            699999999999999999999999999999999999997754

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.4e-09  Score=94.69  Aligned_cols=41  Identities=17%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +-||||||||.+||+||++||++|.||+|+|++..+||-.+
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            57999999999999999999999999999999999999765

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.87  E-value=6.3e-08  Score=101.98  Aligned_cols=58  Identities=22%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++|.+|.   ..+.++|.+.+.. |++++.+++|++|..+  ++.+ .|.+.+|..++||+||+
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~  457 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVL  457 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEE
Confidence            56677773   5788889888888 9999999999999876  5554 57777777789999993

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.86  E-value=1.3e-07  Score=94.15  Aligned_cols=59  Identities=25%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.|..|   ...+.++|.+.++..|++|+++++|++|..+  ++++++|++. +.+++||+||+
T Consensus       190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~  251 (416)
T PRK00711        190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV  251 (416)
T ss_pred             EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence            5566655   3477889999888999999999999999876  5666677755 45799999994

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.85  E-value=1e-07  Score=88.21  Aligned_cols=51  Identities=16%  Similarity=0.161  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          282 PQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       282 ~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+|...++.+|+.++-+..|+.+....|++..++|.+++|..+.|+++|.
T Consensus       156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~  206 (399)
T KOG2820|consen  156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIF  206 (399)
T ss_pred             HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEE
Confidence            356778888999999999999999876566777899999999999999884

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.85  E-value=6.1e-09  Score=93.45  Aligned_cols=46  Identities=13%  Similarity=0.281  Sum_probs=43.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhh
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~   68 (407)
                      .+++|||||++||+||..|+.+|++|+|+||..-+|||..|-++.+
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~   47 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG   47 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence            3699999999999999999999999999999999999999987664

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.82  E-value=7.1e-08  Score=97.28  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=46.0

Q ss_pred             eEeecCC----cchHHHHHHHHHHh----cC--cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYG----QGELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG----~~~l~~al~r~~~~----~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.|..|    .+.++++|.+.++.    .|  ++|+++++|+.|..+  ++..+.|++.+| +++||.||+
T Consensus       199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVv  267 (497)
T PTZ00383        199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVV  267 (497)
T ss_pred             EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEE
Confidence            4556443    26889999999888    77  678999999999875  455677887666 799999984

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.80  E-value=1.8e-07  Score=93.43  Aligned_cols=47  Identities=26%  Similarity=0.375  Sum_probs=42.0

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        17 ~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+.+.++||+|||||++|+-+|+.+|.+|++|+++|++|.-.|..+.
T Consensus         7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsr   53 (532)
T COG0578           7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSR   53 (532)
T ss_pred             cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCc
Confidence            34457899999999999999999999999999999999998886554

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.79  E-value=2.8e-07  Score=93.20  Aligned_cols=43  Identities=14%  Similarity=0.137  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (407)
                      +..+||||||||+.|+++|+.|++.  |++|+||||++.+|+..+
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS   47 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS   47 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence            4568999999999999999999984  899999999988776543

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.77  E-value=7.3e-09  Score=102.34  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=40.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+|||||||||++|++||+.|+++|++|+|||+++.+|.+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            4699999999999999999999999999999999999987766

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.72  E-value=1.3e-08  Score=94.02  Aligned_cols=42  Identities=19%  Similarity=0.248  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++||+|||||.+||+||+.|+++|++|+||||+..+||.++
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~   61 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW   61 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            369999999999999999999999999999999999998653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.72  E-value=7.7e-07  Score=87.38  Aligned_cols=43  Identities=12%  Similarity=0.223  Sum_probs=38.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccccc
Q 015413           23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLS   65 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~t~~   65 (407)
                      .++-|||+|+++|+||+.|-|.    |.++++||+.+..||......
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g   49 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG   49 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence            4688999999999999999876    679999999999999886643

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.70  E-value=1.7e-08  Score=93.38  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||+|||||++||+||+.|+++|++|+|+|++..+||.+
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            36899999999999999999999999999999999999854

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.66  E-value=2.6e-08  Score=99.38  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ++|||||||||++|++||+.|+++|++|+|||+++.+|.+
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            4699999999999999999999999999999999988764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.63  E-value=3.3e-08  Score=99.75  Aligned_cols=45  Identities=24%  Similarity=0.322  Sum_probs=41.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .|.+|||+|||||.+|+.||..|++.|++|+++|+++.+||.+..
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            466799999999999999999999999999999999999998743

>PRK10015 oxidoreductase; Provisional

Probab=98.62  E-value=3.6e-08  Score=98.28  Aligned_cols=40  Identities=30%  Similarity=0.488  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .+|||||||||++|++||+.|+++|++|+|||+.+.+|-+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k   43 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK   43 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence            4699999999999999999999999999999999887643

>PRK07121 hypothetical protein; Validated

Probab=98.59  E-value=6.6e-08  Score=98.30  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++||||||+|.+||+||+.++++|.+|+||||....||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            469999999999999999999999999999999999998653

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.58  E-value=4.6e-08  Score=98.69  Aligned_cols=43  Identities=19%  Similarity=0.269  Sum_probs=39.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      |++|||||||+|.+|++||..+++.|++|+++|+++.+||.+.
T Consensus         1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115          1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            4569999999999999999999999999999999889999764

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.55  E-value=8.3e-08  Score=95.43  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=39.2

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        13 ~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      |..|.-...++||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364          9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            445555555799999999999999999999999999999999864

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.54  E-value=7.2e-08  Score=93.19  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ++||||||||++||++|..|+|+|++|+|+|++...
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            489999999999999999999999999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.54  E-value=8.5e-08  Score=95.78  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=45.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcccccchhh
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD   68 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~t~~~~~   68 (407)
                      .++.+||+|||||.+||++|++|.++|.. +++|||++.+||.++....++
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~   55 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG   55 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence            35679999999999999999999999999 999999999999988766554

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.53  E-value=8.8e-08  Score=96.09  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +...+|+|||||.+||+||..|+++|.+|+|+|+++.+||.+..
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            34579999999999999999999999999999999999998864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.52  E-value=8.6e-08  Score=96.14  Aligned_cols=44  Identities=16%  Similarity=0.375  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~GG~~~t   63 (407)
                      |+.|||||||||.+|+.||..|++.|++|+|+|+.+ .+||.+..
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            457999999999999999999999999999999986 48997753

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.51  E-value=1.2e-07  Score=96.67  Aligned_cols=42  Identities=29%  Similarity=0.430  Sum_probs=38.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      +.+|||||||||++|+.+|+.|++.|++|+|+|+++..+|..
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS   45 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS   45 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            457999999999999999999999999999999998877755

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.51  E-value=9.7e-08  Score=95.67  Aligned_cols=43  Identities=30%  Similarity=0.487  Sum_probs=38.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC-CCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~-~GG~~~   62 (407)
                      |.+|||||||||.+|++||..|++.|++|+|+|+++. +||.+.
T Consensus         1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            3479999999999999999999999999999999875 799653

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.51  E-value=9.8e-08  Score=95.22  Aligned_cols=40  Identities=30%  Similarity=0.501  Sum_probs=34.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ||||||||.+|++||+.+||+|.+|+++|+.+.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999998754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.50  E-value=1.4e-07  Score=94.50  Aligned_cols=42  Identities=12%  Similarity=0.180  Sum_probs=36.9

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        15 ~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -+++...+|||+|||||++|++||..|+++|++|+|+|++..
T Consensus        32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            344555679999999999999999999999999999999853

>PTZ00058 glutathione reductase; Provisional

Probab=98.49  E-value=1.6e-07  Score=96.22  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=45.9

Q ss_pred             CCCCCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413            8 SELPVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus         8 ~~~~~~~-~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ++-|+|+ ++.....+|||||||+|.+|+.||..+++.|++|+++|++ .+||.|..
T Consensus        33 ~~~~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         33 EASSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             cccCcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            3456676 5554445799999999999999999999999999999996 79997644

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.49  E-value=1.2e-07  Score=95.55  Aligned_cols=42  Identities=29%  Similarity=0.368  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      |.+|||||||||.+|++||..|++.|++|+|+|+ +.+||.+.
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            4569999999999999999999999999999999 78999765

>PRK06370 mercuric reductase; Validated

Probab=98.48  E-value=1.4e-07  Score=95.17  Aligned_cols=43  Identities=26%  Similarity=0.424  Sum_probs=38.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|.+|||||||+|.+|++||.+|++.|++|+|+|+. .+||.+.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            567899999999999999999999999999999986 6777654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.48  E-value=1.4e-07  Score=92.87  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=36.6

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ++|..+||||||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            4566799999999999999999999999999999998765

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.47  E-value=1.6e-07  Score=88.49  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      |||+|||||++||++|..|++.|.+|+|+|+++..+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            7999999999999999999999999999999988765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02463 lycopene beta cyclase

Probab=98.46  E-value=2.2e-07  Score=92.71  Aligned_cols=48  Identities=29%  Similarity=0.627  Sum_probs=43.1

Q ss_pred             CCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus         9 ~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..+.|++.+-....|||||||||++||++|+.|+++|++|+|+|++..
T Consensus        15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            567788887677789999999999999999999999999999999764

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.46  E-value=1.7e-07  Score=94.75  Aligned_cols=43  Identities=14%  Similarity=0.177  Sum_probs=39.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +.+|||||||||.+|+.||.+|++.|++|+++|+++.+||.+.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            4479999999999999999999999999999999989999663

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.46  E-value=1.7e-07  Score=93.05  Aligned_cols=39  Identities=21%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      +||||||||+.|+++|+.|+++|++|+||||++.+|+-+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a   40 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET   40 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence            699999999999999999999999999999998776443

>PRK06116 glutathione reductase; Validated

Probab=98.46  E-value=1.5e-07  Score=94.70  Aligned_cols=41  Identities=27%  Similarity=0.368  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+|||||||||.+|++||..|++.|++|+|+|++ .+||.+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            4699999999999999999999999999999995 8999764

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.45  E-value=2e-07  Score=94.99  Aligned_cols=44  Identities=32%  Similarity=0.481  Sum_probs=38.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ++.+|||||||||++|+.+|+.|+++|.+|+|||+++..+|...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~   46 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS   46 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence            35579999999999999999999999999999999987665443

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.45  E-value=6.8e-06  Score=82.22  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=48.4

Q ss_pred             EeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 015413          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL  332 (407)
Q Consensus       272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~~i~Ad~VI~  332 (407)
                      .++.++...+.++|.+.+++.|++|+++++|++|+.+.+++++++|...+ +.+++|+.||+
T Consensus       116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl  177 (432)
T TIGR02485       116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL  177 (432)
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence            35556677899999999999999999999999998752146777877543 45799999994

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.45  E-value=1.8e-07  Score=94.38  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=38.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +|||||||||.+|+.||..|++.|++|+|+|+ +.+||.+..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            38999999999999999999999999999999 899997654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08013 oxidoreductase; Provisional

Probab=98.44  E-value=1.9e-07  Score=92.47  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      |.++||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            45689999999999999999999999999999998863

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.43  E-value=4.2e-06  Score=83.95  Aligned_cols=58  Identities=31%  Similarity=0.423  Sum_probs=48.9

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (407)
                      .+.|.-|.   ..++++|++.|...|+.|.-++||++|...  +++..+|++..| .|+|.+||
T Consensus       176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G-~iet~~~V  236 (856)
T KOG2844|consen  176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG-SIETECVV  236 (856)
T ss_pred             eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCc-ceecceEE
Confidence            44566663   678999999999999999999999999986  566679998777 59999998

>PRK09126 hypothetical protein; Provisional

Probab=98.43  E-value=2.1e-07  Score=91.80  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ++||||||||++||++|..|+++|++|+|+|+++...
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   39 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA   39 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence            6999999999999999999999999999999998753

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.42  E-value=2.1e-07  Score=91.60  Aligned_cols=36  Identities=19%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      |+++||+|||||++||++|+.|+++|++|+|+|++.
T Consensus         1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            446899999999999999999999999999999875

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.42  E-value=2.4e-07  Score=93.54  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=38.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      |.+|||||||+|.+|++||..|++.|++|+++|++ .+||.+..
T Consensus         2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~   44 (466)
T PRK07818          2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN   44 (466)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            45699999999999999999999999999999985 77887654

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.42  E-value=2e-07  Score=92.82  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=46.4

Q ss_pred             CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 015413          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (407)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (407)
                      +...+.+.|.+.+++.|++|+++++|+++.++  +++++||...   +|+  +++|+.||+
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl  197 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL  197 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence            45678899999999999999999999999997  7899999866   455  478999994

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.41  E-value=2.4e-07  Score=94.35  Aligned_cols=41  Identities=32%  Similarity=0.468  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~   60 (407)
                      +.+|||||||||++|+.||..+|+.|.+|+++|++ +.+|+.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            45699999999999999999999999999999998 577764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.41  E-value=2.2e-07  Score=93.27  Aligned_cols=40  Identities=28%  Similarity=0.378  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|||||||+|.+|++||..+++.|++|+++|+ +.+||.+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence            59999999999999999999999999999999 58999765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.40  E-value=2.7e-07  Score=90.93  Aligned_cols=38  Identities=18%  Similarity=0.330  Sum_probs=35.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            45789999999999999999999999999999999864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.40  E-value=2.6e-07  Score=92.87  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=37.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|||||||||.+|++||..|++.|++|+++|++ .+||.+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            599999999999999999999999999999995 6899764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.40  E-value=3.1e-07  Score=90.66  Aligned_cols=52  Identities=17%  Similarity=0.195  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~  333 (407)
                      ..+.+.|.+.++..|++++.+++|++|+.+  ++. +.|++++|++++||.|| ++
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~Ad  165 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAAD  165 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEec
Confidence            356667777777789999999999999875  444 45777888899999999 44

>PLN02661 Putative thiazole synthesis

Probab=98.39  E-value=2.7e-07  Score=87.90  Aligned_cols=41  Identities=15%  Similarity=0.148  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~   62 (407)
                      ++||+|||+|++||+||+.|+++ |++|+|+|++..+||..+
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~  133 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW  133 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence            58999999999999999999986 999999999999988443

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.39  E-value=2.7e-07  Score=91.53  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      +|..+||+|||||++||++|..|+++|++|+|+|++
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            356789999999999999999999999999999996

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.39  E-value=2.3e-07  Score=82.60  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=32.4

Q ss_pred             EEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcccc
Q 015413           26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS   63 (407)
Q Consensus        26 vVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~t   63 (407)
                      +|||||++||++|+.|.+.|.+ |+|||+++.+||.+..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            7999999999999999999999 9999999999999874

...

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.38  E-value=3e-07  Score=92.84  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+|||||||||.+|++||..|++.|++|+++|++. +||.+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            46999999999999999999999999999999987 9997643

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.38  E-value=3.4e-07  Score=92.61  Aligned_cols=42  Identities=21%  Similarity=0.307  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..|||||||||.+|++||.+|++.|++|+++|++ .+||.+..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            4799999999999999999999999999999996 88998754

>PRK06184 hypothetical protein; Provisional

Probab=98.37  E-value=3.8e-07  Score=93.03  Aligned_cols=45  Identities=20%  Similarity=0.298  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL   64 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t~   64 (407)
                      |+++||+|||||++||++|..|++.|.+|+|+|+++.+  .++...+
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l   47 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGI   47 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceee
Confidence            45799999999999999999999999999999999776  4455444

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.37  E-value=3.5e-07  Score=86.47  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      |||+|||||++||+||..|++.|++|+|+|+++ .||.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            699999999999999999999999999999987 7886653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.37  E-value=4e-07  Score=98.02  Aligned_cols=43  Identities=19%  Similarity=0.218  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +.+||+|||||.+||+||+.|++.|++|+|+|+++.+||..+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            4589999999999999999999999999999999999998753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07236 hypothetical protein; Provisional

Probab=98.37  E-value=4e-07  Score=89.70  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      |...||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5678999999999999999999999999999999864

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.36  E-value=3.5e-07  Score=90.21  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      |||||||||++|++||..|+++|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.36  E-value=4.1e-07  Score=93.71  Aligned_cols=42  Identities=36%  Similarity=0.472  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--CCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~--~~GG~~~   62 (407)
                      .++||||||+|.+||+||+.++++|.+|+||||.+  .+||.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999999999999999  8899654

>PRK12831 putative oxidoreductase; Provisional

Probab=98.36  E-value=5.6e-07  Score=90.62  Aligned_cols=44  Identities=18%  Similarity=0.169  Sum_probs=40.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .....||+|||||.+||+||..|++.|++|+|+|+++.+||.+.
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            34568999999999999999999999999999999999999874

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.35  E-value=3.5e-07  Score=86.61  Aligned_cols=39  Identities=36%  Similarity=0.625  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~   61 (407)
                      ||+||||+|.+|+++|.+|+++| ++|+|||+..+.....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            89999999999999999999998 6999999988766554

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.35  E-value=4.2e-07  Score=91.14  Aligned_cols=38  Identities=26%  Similarity=0.521  Sum_probs=36.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcc
Q 015413           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~   61 (407)
                      ||||||+|++||+||+.++++| .+|+||||.+..||.+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            8999999999999999999999 9999999999999864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.34  E-value=4.5e-07  Score=89.55  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ...||+|||||++||++|..|+++|++|+|+|+++.++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            35799999999999999999999999999999997654

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.34  E-value=4.5e-07  Score=89.41  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .+.|||+|||||++||++|..|+++|++|+|+|++..
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            4569999999999999999999999999999999753

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.34  E-value=5.7e-07  Score=83.16  Aligned_cols=42  Identities=36%  Similarity=0.469  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC--CCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~--~GG~~   61 (407)
                      +.++||||||||++||.||+.||.+|++|++||+...  +||.+
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            5579999999999999999999999999999998654  78864

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.34  E-value=4.7e-07  Score=92.44  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++||||||+| +||+||+.++++|.+|+||||...+||.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~   46 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA   46 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence            37899999999 999999999999999999999999898653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.34  E-value=5.5e-07  Score=91.14  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc------CCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~------~~~~GG~~~t   63 (407)
                      .+||+||||+|.+|++||.+|++.|++|+|+|+      +..+||.+..
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n   51 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN   51 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence            469999999999999999999999999999998      4678997754

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.34  E-value=4.2e-07  Score=87.87  Aligned_cols=44  Identities=20%  Similarity=0.367  Sum_probs=40.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~   65 (407)
                      .-+++|||||++|++||..|++.|++|.++|+++.+||+...+.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            35799999999999999999999999999999999999987654

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.33  E-value=5.8e-07  Score=88.37  Aligned_cols=58  Identities=33%  Similarity=0.371  Sum_probs=44.9

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++.+..|.   ..+.++|++.+.+.| ..+..+++|..+..+  . +.++|.+.+|. ++|++||+
T Consensus       145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~  206 (387)
T COG0665         145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVL  206 (387)
T ss_pred             EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEE
Confidence            45566663   578899999999999 456669999999864  3 56788877776 99999994

>PRK14694 putative mercuric reductase; Provisional

Probab=98.32  E-value=5.7e-07  Score=90.88  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=39.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ...|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            45799999999999999999999999999999986 79997653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.32  E-value=5.5e-07  Score=92.82  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..|||||||||.+||+||..|++.|++|+|+|++ .+||.+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            3599999999999999999999999999999995 78997653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.32  E-value=5.9e-07  Score=88.80  Aligned_cols=36  Identities=17%  Similarity=0.327  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      +||||||||++|++||..|+++|++|+|+|++...+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~   36 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA   36 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            699999999999999999999999999999987644

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.32  E-value=6.4e-07  Score=92.75  Aligned_cols=43  Identities=26%  Similarity=0.436  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ..++||||||+|.+||+||+.++++|.+|+||||.+..||.+.
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            3478999999999999999999999999999999999999765

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.31  E-value=6.6e-07  Score=87.38  Aligned_cols=34  Identities=29%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +||+|||||+.||++|+.|+++|++|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PLN02985 squalene monooxygenase

Probab=98.31  E-value=7.8e-07  Score=90.60  Aligned_cols=40  Identities=23%  Similarity=0.359  Sum_probs=35.8

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        17 ~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .....++||||||||++||++|..|+++|++|+|+|+...
T Consensus        38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            3445678999999999999999999999999999999864

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.31  E-value=5.6e-07  Score=88.40  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=33.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ||+|||||++||++|..|+++|++|+|+|++...+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   35 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA   35 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence            89999999999999999999999999999998765

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK13748 putative mercuric reductase; Provisional

Probab=98.30  E-value=5.8e-07  Score=93.00  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..|||||||||.+|++||..|++.|++|+|+|++ .+||.+..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n  138 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN  138 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence            4699999999999999999999999999999997 89997653

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.30  E-value=5.7e-07  Score=88.73  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC---CCeEEEEccC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~---G~~VlvlE~~   54 (407)
                      |.++||+|||||++||++|+.|+|+   |.+|+|+|++
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4679999999999999999999998   9999999996

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.30  E-value=6.6e-07  Score=88.10  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      .+||+|||||++||++|+.|++.|++|+|+|+++...
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            5899999999999999999999999999999998754

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.29  E-value=6.7e-07  Score=88.11  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ||||||||++||++|+.|+++|++|+|||+++..||.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999887764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.29  E-value=6.1e-07  Score=88.96  Aligned_cols=35  Identities=37%  Similarity=0.621  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL   36 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence            48999999999999999999999999999999874

>PRK06834 hypothetical protein; Provisional

Probab=98.28  E-value=8.1e-07  Score=90.08  Aligned_cols=46  Identities=20%  Similarity=0.321  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC---CCCcccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF---YGSHFSSLS   65 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~---~GG~~~t~~   65 (407)
                      |+++||||||||++||++|..|+++|.+|+|+|+++.   .|.|...+.
T Consensus         1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~   49 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLH   49 (488)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeEC
Confidence            4679999999999999999999999999999999875   344544433

>PLN02697 lycopene epsilon cyclase

Probab=98.28  E-value=1.1e-06  Score=89.17  Aligned_cols=48  Identities=27%  Similarity=0.468  Sum_probs=39.6

Q ss_pred             CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        11 ~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      +.|+++ .....|||||||||++||++|+.|+++|++|+++|+....+.
T Consensus        98 ~~~~~~-~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~  145 (529)
T PLN02697         98 KLPPIS-IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTN  145 (529)
T ss_pred             cCCCCC-cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCC
Confidence            445555 345579999999999999999999999999999998755443

>PRK14727 putative mercuric reductase; Provisional

Probab=98.28  E-value=7.4e-07  Score=90.30  Aligned_cols=43  Identities=16%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..||+||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            3589999999999999999999999999999999999998764

>PRK06185 hypothetical protein; Provisional

Probab=98.27  E-value=8e-07  Score=88.16  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            469999999999999999999999999999999864

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=8e-07  Score=88.02  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=41.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~   64 (407)
                      +..-+|+|||||.+||++|+.|.+.|++|+|+||.+.+||-+.--
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            335699999999999999999999999999999999999988754

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.27  E-value=1.4e-05  Score=80.31  Aligned_cols=53  Identities=23%  Similarity=0.344  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~  333 (407)
                      +.+-+-|.+.+.+.|++++.++ |..+..+ ++|.+++|++.+|++++||.|| |+
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~-~~g~i~~v~~~~g~~i~ad~~IDAS  207 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELD-EDGRITAVRLDDGRTIEADFFIDAS  207 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE--TTSEEEEEEETTSEEEEESEEEE-S
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEc-CCCCEEEEEECCCCEEEEeEEEECC
Confidence            4566778888899999998875 8888877 4788889999999999999999 64

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR02053 MerA mercuric reductase

Probab=98.27  E-value=8.3e-07  Score=89.61  Aligned_cols=39  Identities=28%  Similarity=0.526  Sum_probs=36.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      |||||||||.+|++||..|++.|++|+++|+.. +||.+.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            799999999999999999999999999999976 788754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=9.3e-07  Score=83.57  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~   65 (407)
                      |..|||||||||.+||+||.+++|+|.++.|++....+||......
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            4579999999999999999999999999555555577887665543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.26  E-value=8e-07  Score=87.69  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            37999999999999999999999999999999984

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.26  E-value=9.2e-07  Score=91.66  Aligned_cols=41  Identities=27%  Similarity=0.307  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      |...||||||+|++||+||+.++++|.+|+||||....||.
T Consensus         1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            34579999999999999999999999999999999887764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.26  E-value=1.3e-06  Score=93.84  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+..+|+|||||.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            34579999999999999999999999999999999999998754

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.25  E-value=8.7e-07  Score=91.70  Aligned_cols=41  Identities=22%  Similarity=0.402  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|.+||+||+.++++|.+|+||||.+..||.+
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            36899999999999999999999999999999999999853

>PRK06847 hypothetical protein; Provisional

Probab=98.25  E-value=1e-06  Score=86.36  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      +..||+|||||++||++|..|++.|.+|+|+|+++..
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4579999999999999999999999999999998764

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.25  E-value=9.9e-07  Score=90.88  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|.+||+||..|+++|.+|+|||++..+||.+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            36899999999999999999999999999999999999965

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.25  E-value=1.2e-06  Score=92.01  Aligned_cols=43  Identities=19%  Similarity=0.287  Sum_probs=39.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            3467999999999999999999999999999999999999764

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.24  E-value=1.1e-06  Score=91.71  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ...|||||||||+.|+.+|+.|++.|++|+|||+++.-+|.
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt  109 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT  109 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence            34599999999999999999999999999999999876663

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.24  E-value=1.5e-06  Score=87.23  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=40.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++.+||+|||+|.+||+||..|++.|++|+|+|+++.+||.+.
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            44568999999999999999999999999999999999999754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.24  E-value=1.1e-06  Score=95.29  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...+|+|||+|.+||+||..|+++|++|+|+|+++++||..+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            357899999999999999999999999999999999999865

>PTZ00367 squalene epoxidase; Provisional

Probab=98.24  E-value=1.1e-06  Score=90.18  Aligned_cols=40  Identities=28%  Similarity=0.534  Sum_probs=35.4

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        16 ~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      |.....++||||||||++|+++|..|+++|++|+|+|++.
T Consensus        27 ~~~~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         27 PARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccccccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3334457999999999999999999999999999999975

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.24  E-value=1.1e-06  Score=87.40  Aligned_cols=44  Identities=23%  Similarity=0.324  Sum_probs=41.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +.+||+||||+|.+|.+||.++++.|++|+++|+...+||-|..
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln   45 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN   45 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence            45799999999999999999999999999999999999997754

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.24  E-value=9.5e-07  Score=86.64  Aligned_cols=34  Identities=12%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ++||+|||||++||++|..|+++|++|+|+|+++
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            3799999999999999999999999999999975

>PRK07190 hypothetical protein; Provisional

Probab=98.23  E-value=1.1e-06  Score=88.91  Aligned_cols=44  Identities=14%  Similarity=0.147  Sum_probs=38.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t   63 (407)
                      +..+||+|||||++||++|+.|+++|.+|+|||+++.+  +|++..
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~   48 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADA   48 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceE
Confidence            34689999999999999999999999999999999875  556543

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.23  E-value=9.9e-07  Score=86.66  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=40.1

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 015413          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (407)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p  334 (407)
                      ..+.+.|.+.+.. .|++++++++|++|..+  ++. +.|++++|++++||.|| ++.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG  159 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG  159 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence            3566777776666 48999999999999875  343 46777788889999988 554

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.23  E-value=1.3e-06  Score=90.61  Aligned_cols=44  Identities=25%  Similarity=0.257  Sum_probs=38.8

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      +...++||||||+|.+||+||+.++++|.+|+||||....||.+
T Consensus         8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057          8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            44456899999999999999999999999999999988777643

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.22  E-value=1.1e-06  Score=86.72  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=41.2

Q ss_pred             cchHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 015413          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP  334 (407)
Q Consensus       278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI-~~p  334 (407)
                      ...|-++|.+.+...+ .+++.++.|+.+..+  ++.+ .|+++ +|++++||.|| ++-
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v-~v~l~~dG~~~~a~llVgADG  159 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGV-TVTLSFDGETLDADLLVGADG  159 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCce-EEEEcCCCcEEecCEEEECCC
Confidence            4456666767776666 799999999999986  4454 47777 99999999999 553

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.21  E-value=1.2e-06  Score=89.05  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++.+.+.+..+..|.++++++.|++|...  ++. ..|++.+|+++.+|.||+
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~  272 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLY  272 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEE
Confidence            46677778888899999999999999764  333 356677888999999984

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.21  E-value=1.8e-06  Score=90.43  Aligned_cols=47  Identities=21%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        16 ~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ++..+...+|+|||+|.+||+||..|++.|++|+|+|+++++||.++
T Consensus       304 ~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            33334567899999999999999999999999999999999999865

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.21  E-value=1.5e-06  Score=90.03  Aligned_cols=41  Identities=32%  Similarity=0.273  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ..++||||||+|.+||+||..++++|.+|+||||....||.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            34689999999999999999999999999999999887774

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.21  E-value=1.5e-06  Score=90.78  Aligned_cols=39  Identities=23%  Similarity=0.286  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .++||||||+|++||+||..++++|.+|+|+||....||
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            468999999999999999999999999999999987655

>PRK12839 hypothetical protein; Provisional

Probab=98.21  E-value=1.6e-06  Score=89.53  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..++||||||+|.+||+||+.|+++|.+|+|||++..+||.+..
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   49 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW   49 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence            44799999999999999999999999999999999999997653

>PRK11445 putative oxidoreductase; Provisional

Probab=98.20  E-value=1.3e-06  Score=85.04  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      +|||+|||||++||++|+.|+++ ++|+|+|+++..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            48999999999999999999999 999999999864

>PRK06753 hypothetical protein; Provisional

Probab=98.20  E-value=1.3e-06  Score=85.45  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=33.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ||+|||||++||++|..|+++|++|+|+|+++...
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            79999999999999999999999999999998754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.20  E-value=1.3e-06  Score=86.21  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999984

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.20  E-value=1.7e-06  Score=89.25  Aligned_cols=42  Identities=26%  Similarity=0.552  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++||||||+|.+|++||+.++++|.+|+||||...+||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            479999999999999999999999999999999999998543

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.19  E-value=1.5e-06  Score=81.79  Aligned_cols=36  Identities=25%  Similarity=0.490  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ....+||||||||.+|.+.|+.|+|.|++|+|+||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            345699999999999999999999999999999996

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.19  E-value=1.9e-06  Score=88.44  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++||||||+|.+||+||..++++|.+|+||||....||.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            4689999999999999999999999999999999987774

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.19  E-value=1.4e-06  Score=86.34  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~   56 (407)
                      +|||+|||||++||++|..|+++|  ++|+|+|+++.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            489999999999999999999996  99999999874

>PRK06126 hypothetical protein; Provisional

Probab=98.19  E-value=1.6e-06  Score=89.33  Aligned_cols=37  Identities=8%  Similarity=0.176  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +.++||+|||||++||++|..|++.|++|+|+|+++.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4468999999999999999999999999999999874

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.18  E-value=1.7e-06  Score=89.30  Aligned_cols=45  Identities=20%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t~~   65 (407)
                      .++||+|||||++||++|..|++.|.+|+|+|+++.+  +++...+.
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~   68 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA   68 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence            3589999999999999999999999999999999865  55554433

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.18  E-value=1.4e-06  Score=87.18  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~----~G~~VlvlE~~~~   56 (407)
                      |||+|||||++||++|+.|++    +|++|+|+|+++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            799999999999999999999    8999999999654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.18  E-value=2e-06  Score=93.98  Aligned_cols=42  Identities=14%  Similarity=0.126  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +..||+|||||.+||+||..|++.|++|+|+|+.+.+||..+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            457999999999999999999999999999999999999765

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.18  E-value=1.8e-06  Score=89.07  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|.+||+||+.++++|.+|+|+||....||.+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s   44 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS   44 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence            45899999999999999999999999999999998777743

>PLN02507 glutathione reductase

Probab=98.17  E-value=1.8e-06  Score=87.74  Aligned_cols=44  Identities=23%  Similarity=0.138  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc---------CCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP---------NPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~---------~~~~GG~~~t   63 (407)
                      +.+|||||||+|.+|+.||.++++.|++|+++|+         .+.+||.|..
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n   75 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI   75 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence            4469999999999999999999999999999996         3679998744

>PRK08244 hypothetical protein; Provisional

Probab=98.17  E-value=1.7e-06  Score=88.02  Aligned_cols=43  Identities=16%  Similarity=0.222  Sum_probs=37.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSL   64 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t~   64 (407)
                      ++||+|||||++||++|..|+++|.+|+|+|+++..  .|+..++
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l   46 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTL   46 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEe
Confidence            389999999999999999999999999999998754  4555443

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.16  E-value=1.9e-06  Score=88.59  Aligned_cols=43  Identities=23%  Similarity=0.304  Sum_probs=37.5

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      ....++||||||+|++||+||+.++ +|.+|+||||.+..||.+
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s   47 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS   47 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence            3455799999999999999999986 599999999999888743

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.16  E-value=2.7e-06  Score=85.97  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...+||+|||+|.+||+||..|++.|++|+|+|+.+.+||...
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            3457999999999999999999999999999999999999754

>PRK07538 hypothetical protein; Provisional

Probab=98.15  E-value=1.9e-06  Score=85.71  Aligned_cols=35  Identities=14%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            38999999999999999999999999999998754

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.15  E-value=2.3e-06  Score=89.14  Aligned_cols=40  Identities=18%  Similarity=0.137  Sum_probs=36.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      ++||||||+|.+||.||+.++++|.+|+|+||....||.+
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t   68 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT   68 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence            6899999999999999999999999999999998877743

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.15  E-value=2.1e-06  Score=89.11  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++||||||+|++||+||+.++++|.+|+||||....||.
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            4689999999999999999999999999999998776664

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.15  E-value=2.3e-06  Score=83.75  Aligned_cols=41  Identities=22%  Similarity=0.356  Sum_probs=36.8

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCC-ccccc
Q 015413           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS-HFSSL   64 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG-~~~t~   64 (407)
                      ||||||||++||++|+.|+++  |++|+|+|+++..|| +++++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~   44 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSF   44 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCccccee
Confidence            899999999999999999987  999999999998887 44443

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.14  E-value=2.1e-06  Score=85.78  Aligned_cols=39  Identities=10%  Similarity=0.220  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++||||||+|.+||+||..++ +|.+|+||||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            3689999999999999999975 79999999999998875

>PLN02815 L-aspartate oxidase

Probab=98.14  E-value=2.8e-06  Score=87.81  Aligned_cols=48  Identities=19%  Similarity=0.263  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        12 ~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ++|+-.-...++||||||+|++||+||+.++++| +|+||||....||.
T Consensus        19 ~~~~~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         19 ASRLDDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             ccccccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            3444333344689999999999999999999999 89999999998884

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.14  E-value=2.2e-06  Score=86.68  Aligned_cols=52  Identities=12%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+..+..|.++++++.|++|..+  ++....|++.+|+++++|.||+
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~  282 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM  282 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence            567788888888899999999999999864  2333456667888999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.14  E-value=2.5e-06  Score=93.59  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=40.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..+||+|||||.+||+||..|+++|++|+|+|+++++||....
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            4689999999999999999999999999999999999998764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.13  E-value=2e-06  Score=86.86  Aligned_cols=61  Identities=16%  Similarity=0.116  Sum_probs=44.9

Q ss_pred             ceEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCC--cEEEcCEEEE
Q 015413          270 ALIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVL  332 (407)
Q Consensus       270 ~~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G--~~i~Ad~VI~  332 (407)
                      +.+.|.+|   ...+.++|.+.++..|++|+++++|++|..+ +++. +.|++   .+|  .+++||+||+
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~-~~~~-v~v~~~~~~~g~~~~i~A~~VV~  234 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQ-SDGS-WTVTVKNTRTGGKRTLNTRFVFV  234 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCe-EEEEEeeccCCceEEEECCEEEE
Confidence            35567676   3788999999998999999999999999875 1333 33432   234  3689999984

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.13  E-value=2.6e-06  Score=87.72  Aligned_cols=39  Identities=21%  Similarity=0.286  Sum_probs=36.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      +.++||+|||||++||++|..|++.|++|+|+|++..++
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~   46 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY   46 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            456899999999999999999999999999999998654

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.13  E-value=3.1e-06  Score=87.72  Aligned_cols=44  Identities=23%  Similarity=0.414  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..++||||||+|.+|++||..++++|++|+|||+++.+||.+..
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   53 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW   53 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            44799999999999999999999999999999999999997653

>PRK02106 choline dehydrogenase; Validated

Probab=98.13  E-value=2.6e-06  Score=88.12  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~   56 (407)
                      ..+||+||||+|.+|+++|.+|++ +|++|+|||+...
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            456999999999999999999999 8999999999864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.12  E-value=2.5e-06  Score=88.92  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=36.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      ++||||||+|++||.||+.++++|.+|+|+||....||.+
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s   89 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT   89 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence            5899999999999999999999999999999998877743

>PRK07588 hypothetical protein; Provisional

Probab=98.12  E-value=2.5e-06  Score=84.19  Aligned_cols=34  Identities=12%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3899999999999999999999999999999864

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.12  E-value=2.3e-06  Score=88.62  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~   60 (407)
                      |.++||||||+|.+||+||+.++++|  .+|+||||....||.
T Consensus         1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            35689999999999999999999874  899999999877764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.11  E-value=3e-06  Score=88.60  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++||||||+|.+||+||+.++++|.+|+|+|++..+|+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g   73 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA   73 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence            3689999999999999999999999999999998888643

>PRK10262 thioredoxin reductase; Provisional

Probab=98.11  E-value=3e-06  Score=81.26  Aligned_cols=42  Identities=12%  Similarity=0.198  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..+||+|||||.+||.||..|++.|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            4689999999999999999999999999999965 67887643

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.11  E-value=4.2e-06  Score=84.46  Aligned_cols=43  Identities=26%  Similarity=0.393  Sum_probs=39.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+..+|+|||+|.+||+||..|++.|++|+++|+++.+||..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            3557999999999999999999999999999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.10  E-value=2.9e-06  Score=86.49  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=35.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .|+|||||.+||+||..|.+.|.+|+++|+++.+||.++.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            6999999999999999999999999999999999999863

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02546 glutathione reductase

Probab=98.10  E-value=3.2e-06  Score=86.80  Aligned_cols=43  Identities=28%  Similarity=0.180  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccC---------CCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~---------~~~GG~~~t   63 (407)
                      .+|||||||+|.+|..||..+++.|++|+++|++         ..+||.|-.
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n  129 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL  129 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence            3599999999999999999999999999999962         568886654

>PRK05868 hypothetical protein; Validated

Probab=98.10  E-value=3.1e-06  Score=82.90  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            48999999999999999999999999999998764

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.09  E-value=3.3e-06  Score=88.50  Aligned_cols=40  Identities=33%  Similarity=0.393  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++||||||+|++||.||..++++|.+|+|||+....||.
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~   43 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH   43 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence            4689999999999999999999999999999999887663

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.09  E-value=4.6e-06  Score=89.17  Aligned_cols=42  Identities=17%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...||+|||||.+||+||..|++.|++|+|+|+++.+||...
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            457999999999999999999999999999999999999865

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.08  E-value=3.5e-06  Score=82.63  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.6

Q ss_pred             cEEEECCChhHHHHHHHH--hhCCCeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~L--a~~G~~VlvlE~~~~~   57 (407)
                      ||||||||++||++|+.|  ++.|++|+|||++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8899999999998887

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.08  E-value=4e-06  Score=80.17  Aligned_cols=47  Identities=15%  Similarity=0.205  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC--CCcccccchhh
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLSIAD   68 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~--GG~~~t~~~~~   68 (407)
                      +-+|||||||++||++|..|+|+|++|+|||++.-+  +|+.-+.-+++
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng   50 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNG   50 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhH
Confidence            358999999999999999999999999999998765  44443333343

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.08  E-value=4e-06  Score=93.28  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=39.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      +.++||||||+|.+||+||+..+++|.+|+||||....||.+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            346999999999999999999999999999999999999975

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.07  E-value=3.7e-06  Score=86.08  Aligned_cols=41  Identities=17%  Similarity=0.312  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...|||+|||||.+||+||.+|++.|++|+|+|.  ++||.+.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~  249 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL  249 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence            3469999999999999999999999999999986  4999875

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.07  E-value=5.7e-06  Score=85.68  Aligned_cols=42  Identities=29%  Similarity=0.470  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++||||||+|.+|++||..++++|++|+|||+++..||.+.
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence            368999999999999999999999999999999999999765

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.07  E-value=3.8e-06  Score=82.20  Aligned_cols=36  Identities=25%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      .||+|||||++||.||..|++.|++|+|+|+++...
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence            489999999999999999999999999999877654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.06  E-value=4.8e-06  Score=87.39  Aligned_cols=42  Identities=19%  Similarity=0.228  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...+|+|||+|.+||+||..|++.|++|+|+|+++++||.+.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            357999999999999999999999999999999999999864

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.06  E-value=4.6e-06  Score=84.03  Aligned_cols=42  Identities=19%  Similarity=0.214  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...+|+|||||.+||+||..|++.|++|+|+|+++++||...
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            357999999999999999999999999999999999999754

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.06  E-value=3.9e-06  Score=86.92  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      ||||||+|++||+||+.++++|.+|+||||....||.+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            89999999999999999999999999999998877744

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.06  E-value=4.1e-06  Score=86.81  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC---CeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G---~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|.+||+||..++++|   .+|+|+||....||.+
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            3589999999999999999999998   8999999999877743

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.05  E-value=5.4e-06  Score=83.34  Aligned_cols=42  Identities=17%  Similarity=0.137  Sum_probs=38.9

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..+|+|||||.+||.||..|++  .|++|+|+|+.+.+||.++.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            4689999999999999999987  79999999999999998874

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.05  E-value=4.5e-06  Score=84.79  Aligned_cols=39  Identities=13%  Similarity=0.158  Sum_probs=37.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      |||||||+|.+|+++|+.|+++|++|+++|++...||.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999999999755

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.04  E-value=4.3e-06  Score=82.25  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=34.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ||+|||||++|+.||..|++.|++|+|+|+++..|-.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p   38 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTP   38 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCc
Confidence            7999999999999999999999999999998887653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.03  E-value=5.1e-06  Score=84.94  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...|||+|||||.+||+||..|++.|++|+|+|.  ++||.+.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            4469999999999999999999999999999985  6999765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.03  E-value=5e-06  Score=83.84  Aligned_cols=43  Identities=9%  Similarity=0.111  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (407)
                      ...+||||||||++|+++|+.|++.  |++|+|||+.+.+|-..+
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS   48 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS   48 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence            3468999999999999999999999  999999999778775443

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.03  E-value=4.7e-06  Score=82.54  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      -+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            57999999999999999999999999999998754

>TIGR00551 nadB L-aspartate oxidase

Probab=98.03  E-value=5e-06  Score=84.48  Aligned_cols=39  Identities=26%  Similarity=0.423  Sum_probs=35.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      ++||||||+|++||.||..++++|. |+||||.+..||.+
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s   40 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNS   40 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcc
Confidence            4799999999999999999999998 99999998888743

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.03  E-value=6.5e-06  Score=81.98  Aligned_cols=52  Identities=21%  Similarity=0.241  Sum_probs=44.5

Q ss_pred             CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        12 ~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +|..++-..+...|.|||+|.+||+||..|+++|++|+|+|+.+..||+...
T Consensus       113 i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         113 IPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            3443444445579999999999999999999999999999999999999874

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.03  E-value=5e-06  Score=84.84  Aligned_cols=40  Identities=18%  Similarity=0.294  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|.+||.||..+++ |.+|+|+||....||.+
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            36899999999999999999976 99999999999887753

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.01  E-value=4.5e-06  Score=80.88  Aligned_cols=44  Identities=30%  Similarity=0.357  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEE-ccCCCCCCcccccchh
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHL-DPNPFYGSHFSSLSIA   67 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~Vlvl-E~~~~~GG~~~t~~~~   67 (407)
                      ||||||||++|+.||+.+||.|.+|+++ ++.+.+|...-+-.+.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsig   45 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIG   45 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhc
Confidence            8999999999999999999999999999 7888888765443333

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.01  E-value=5.5e-06  Score=86.55  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCC--CCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~--GG~~~t   63 (407)
                      ++++||+|||||++||++|+.|++ .|.+|+|+|+++..  .|++..
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~g   76 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADG   76 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeE
Confidence            457999999999999999999999 59999999998643  455543

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.01  E-value=6.9e-06  Score=86.33  Aligned_cols=56  Identities=18%  Similarity=0.184  Sum_probs=48.1

Q ss_pred             CCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413            7 ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      |.-|-+|+-|. ..+-..|.|||+|.+||+||..|-|+|+.|+|+|+.||+||....
T Consensus      1771 ~egwm~p~pp~-~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1771 EEGWMKPCPPA-FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             HhcCCccCCcc-cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            34577777555 456789999999999999999999999999999999999998753

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.00  E-value=5.9e-06  Score=86.11  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=37.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~~~   62 (407)
                      +|||||||+|.+|..||..+++.|++|+++|+. +.+||.|-
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv  157 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV  157 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence            689999999999999999999999999999974 57999664

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.00  E-value=6.7e-06  Score=85.26  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+..+|+|||||++||++|..|+|+|++|+|+|++.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            345899999999999999999999999999999975

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.99  E-value=1e-05  Score=82.10  Aligned_cols=42  Identities=17%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...+|+|||+|++||+||..|++.|++|+|+|+.+++||...
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            346999999999999999999999999999999999999764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.99  E-value=6.5e-06  Score=81.91  Aligned_cols=35  Identities=17%  Similarity=0.409  Sum_probs=32.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYG   58 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~G   58 (407)
                      +|+|||||++||++|..|+++| .+|+|+|+++.++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            6999999999999999999998 5999999998765

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.99  E-value=6.4e-06  Score=85.71  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=35.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG   59 (407)
                      .++||||||+|.+||+||+.++++  |.+|+||||....|+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            358999999999999999999998  999999999987544

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.98  E-value=6.9e-06  Score=82.91  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+...|++++.+ .|+.+..+  ++++++|.. +++.++|+.||+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL  169 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI  169 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence            468888988888899998765 78888765  678888875 677899999884

>PRK06996 hypothetical protein; Provisional

Probab=97.98  E-value=7e-06  Score=81.21  Aligned_cols=39  Identities=15%  Similarity=0.289  Sum_probs=34.3

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEEccCCC
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G----~~VlvlE~~~~   56 (407)
                      +....+||+|||||++|+++|..|+++|    ++|+|+|+++.
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            4455789999999999999999999997    47999999864

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.96  E-value=7.5e-06  Score=77.97  Aligned_cols=45  Identities=16%  Similarity=0.199  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----C--CCeEEEEccCCCCCCcccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS   65 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~----~--G~~VlvlE~~~~~GG~~~t~~   65 (407)
                      +.+||+|||||.+||+||++|.+    +  -.+|+|+|+...+||.+-|-.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa  125 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA  125 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence            46999999999999999999854    2  469999999999999887643

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.96  E-value=8.6e-06  Score=83.28  Aligned_cols=45  Identities=27%  Similarity=0.321  Sum_probs=40.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ++..++||||||+|.+||.||..++.+|.+|+++||....||.+.
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~   46 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV   46 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence            345679999999999999999999999999999999999886554

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.96  E-value=7.8e-06  Score=84.70  Aligned_cols=40  Identities=23%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (407)
                      ++||||||+|.+||+||+.++++  |.+|+|+||....||.+
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            58999999999999999999987  47999999998877744

>PRK08275 putative oxidoreductase; Provisional

Probab=97.95  E-value=8.2e-06  Score=84.20  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..+.+.|.+.++..|++|+.++.|++|..+ ++++++||..   .+|+  .+.|+.||+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIl  194 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTD-ADGRVAGALGFDCRTGEFLVIRAKAVIL  194 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEc-CCCeEEEEEEEecCCCcEEEEECCEEEE
Confidence            467788888888889999999999999875 2577888763   3554  478999884

>TIGR00275 flavoprotein, HI0933 family

Probab=97.95  E-value=4.9e-06  Score=82.33  Aligned_cols=57  Identities=21%  Similarity=0.287  Sum_probs=43.6

Q ss_pred             EeecC-CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          272 IYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       272 ~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .||.. ...++.+.|.+.++..|+++++++.|++|..+  ++ .+.|++ +++++.||.||+
T Consensus        97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIl  154 (400)
T TIGR00275        97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVIL  154 (400)
T ss_pred             eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEE
Confidence            34433 35788889988888899999999999999764  34 356765 567899999884

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.95  E-value=7.8e-06  Score=84.15  Aligned_cols=40  Identities=23%  Similarity=0.327  Sum_probs=35.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC-CCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~-~GG~~   61 (407)
                      .++||||||+|.+||+||+.+ ++|.+|+|+||... .||++
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s   46 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCT   46 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccc
Confidence            358999999999999999999 99999999999865 45553

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.95  E-value=7.6e-06  Score=75.76  Aligned_cols=58  Identities=17%  Similarity=0.139  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE--EEcCEEE-ECCCCCCC
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFTVP  339 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~--i~Ad~VI-~~p~~~~~  339 (407)
                      .+-++|.+..+..||.++.+-+|.+....  ++++..|.+.+...  ++||.+| .+-++.-.
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsffsk  319 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFFSK  319 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccccc
Confidence            56788889899999999999999999987  88888998877665  5788877 45655533

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.93  E-value=1e-05  Score=82.07  Aligned_cols=41  Identities=32%  Similarity=0.360  Sum_probs=36.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--------CCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~--------~~GG~~~   62 (407)
                      +||+||||+|.+|+.||..+++.|++|+++|+..        .+||.+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~   50 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV   50 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence            4899999999999999999999999999999742        5888654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.92  E-value=9.3e-06  Score=84.00  Aligned_cols=40  Identities=25%  Similarity=0.175  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (407)
                      ++||+|||+|++||.||..++++  |.+|+|+||....||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            58999999999999999999987  58999999999888854

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.92  E-value=1e-05  Score=80.05  Aligned_cols=51  Identities=18%  Similarity=0.137  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~Ad~VI~  332 (407)
                      ++.++|.+.++..|+++++++.|+++..+  ++++..|...+|+  +++||.||+
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL  312 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL  312 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence            78999999998999999999999999876  5666666545553  489999884

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.91  E-value=1.1e-05  Score=83.59  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .++||||||+|++||+||+.+++. .+|+|+||....||
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            468999999999999999999986 99999999876665

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.90  E-value=1.6e-05  Score=84.67  Aligned_cols=41  Identities=24%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .+..+|+|||+|.+||+||+.|++.|++|+|+|+.+..|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            45679999999999999999999999999999999887765

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.90  E-value=1.2e-05  Score=82.72  Aligned_cols=40  Identities=18%  Similarity=0.324  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|.+||+||+.+++. .+|+|+||....||.+
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t   46 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST   46 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence            468999999999999999999987 8999999999888743

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.84  E-value=1.9e-05  Score=69.99  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ||||||||.+|+.||..|++.|++|+++|+.+..+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~   35 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTP   35 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence            79999999999999999999999999998876543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.82  E-value=2.8e-05  Score=80.47  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ...+|+|||+|.+||++|..|++.|++|+|+|+++.+||..+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            346899999999999999999999999999999999999764

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.82  E-value=1.8e-05  Score=81.09  Aligned_cols=35  Identities=34%  Similarity=0.597  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..+||+||||+|.+|.++|.+|+.+|++|+|||+.
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            35799999999999999999999999999999996

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.78  E-value=3e-05  Score=75.38  Aligned_cols=40  Identities=20%  Similarity=0.183  Sum_probs=37.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+|+|||+|.+||.+|..|++.|++|+++|+.+++||...
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            5899999999999999999999999999999999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.77  E-value=4.4e-05  Score=57.17  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=33.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      .|+|||||+.|+-+|..|++.|.+|+++|+++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            38999999999999999999999999999999988

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.74  E-value=3.1e-05  Score=80.33  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHh----hCCCeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La----~~G~~VlvlE~~~~~   57 (407)
                      ||||||+|.+||.||+.++    ++|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    789999999998763

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.72  E-value=4.6e-05  Score=75.86  Aligned_cols=42  Identities=14%  Similarity=0.062  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHH-hhCCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~L-a~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ...|+|||||.+||.||..| ++.|++|+|+|+.+.+||.++.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            45799999999999999965 5679999999999999998875

>TIGR01810 betA choline dehydrogenase

Probab=97.71  E-value=3e-05  Score=79.76  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (407)
                      |+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999999 69999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK13984 putative oxidoreductase; Provisional

Probab=97.70  E-value=5.3e-05  Score=79.12  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+..+|+|||+|.+|++||..|++.|++|+|+|+.+..||...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            3457899999999999999999999999999999999999654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.70  E-value=5.2e-05  Score=82.58  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..++||||||+|.+||.||+.++++|.+|+|+||...
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            3468999999999999999999999999999999875

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.69  E-value=3.6e-05  Score=78.59  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHhc-CcEEEeCCceeEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~Ad~VI~  332 (407)
                      ..+.++|.+.+... |++|+.+++|++|..+  +++++||.+.+ ++  .+.|+.||+
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL  191 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL  191 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence            46888888877764 8999999999999875  78888887543 33  589999994

>PLN02785 Protein HOTHEAD

Probab=97.69  E-value=4.3e-05  Score=79.03  Aligned_cols=35  Identities=34%  Similarity=0.477  Sum_probs=32.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            36999999999999999999999 699999999753

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.69  E-value=4.3e-05  Score=78.06  Aligned_cols=37  Identities=35%  Similarity=0.334  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      |||||||+|++|+.||..+++.|.+|+++|++...+|
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g   37 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIG   37 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence            7999999999999999999999999999999854443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.68  E-value=3.3e-05  Score=80.32  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=33.1

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      |||||+|.+||+||+.++++|.+|+||||...+||.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g   36 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA   36 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence            699999999999999999999999999999977543

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.67  E-value=4.7e-05  Score=76.96  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+..+..|.++++++.|++|..+  ++. +.|.+.+|+++.+|.||+
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~  268 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALM  268 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEE
Confidence            456677777778899999999999999865  344 356667888999999884

>TIGR03452 mycothione_red mycothione reductase

Probab=97.66  E-value=4.6e-05  Score=76.71  Aligned_cols=39  Identities=26%  Similarity=0.440  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +||+||||+|.+|..||++  ++|++|+++|+ +.+||.|..
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n   40 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN   40 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence            5999999999999998754  46999999998 578997754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.65  E-value=5.5e-05  Score=76.28  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=34.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|||||+|.+|++||..|++.|++|+++|++ .+||.+.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~   39 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL   39 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence            7999999999999999999999999999987 4777654

>PRK07846 mycothione reductase; Reviewed

Probab=97.64  E-value=5e-05  Score=76.37  Aligned_cols=39  Identities=26%  Similarity=0.484  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +||+||||+|.+|..||.+  ++|++|+++|+ +.+||-|..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n   39 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLN   39 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccC
Confidence            3899999999999988876  46999999998 578886654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.63  E-value=4.9e-05  Score=81.36  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~   57 (407)
                      +|+|||||++||+||..|+++  |++|+|+|++...
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            799999999999999999998  8999999999863

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.61  E-value=6e-05  Score=71.31  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+|||+|||+|.+|-.||...++.|.+...+|+|..+||.+..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn   80 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN   80 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence            4799999999999999999999999999999999999997754

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.60  E-value=5.7e-05  Score=70.35  Aligned_cols=46  Identities=22%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             cccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCCCCcccccchh
Q 015413           22 AFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFSSLSIA   67 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~----~G~~VlvlE~~~~~GG~~~t~~~~   67 (407)
                      .+||+|||+|..|++.|+.|.+    .|.+|+|+|+++.|--.....+..
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvG  135 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVG  135 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeec
Confidence            6899999999999999999864    479999999999875444434333

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.56  E-value=7.2e-05  Score=73.40  Aligned_cols=99  Identities=13%  Similarity=0.045  Sum_probs=63.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEE-CCCCCCCCC----Cccchh----
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSFTVPGS----LASSHQ----  347 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~Ad~VI~-~p~~~~~~~----~~~~~p----  347 (407)
                      ..+.++|.+.++..|++++.++.|+++..+  ++++++|.++++  .+++||+||+ +-......+    .--++|    
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L  340 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGL  340 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCC
Confidence            467788999999999999999999999886  677777876665  4799999884 444421211    100122    


Q ss_pred             hh--hhhhhhhcccCCC--ceEEEEEEEeCCCCCCC
Q 015413          348 QL--QESFQAFSLSDNK--GKVARGICITRSSLKPD  379 (407)
Q Consensus       348 ~l--p~~~~~~~~~~~~--g~~~k~i~i~~~p~~~~  379 (407)
                      ++  |+.+..|.+....  ..+.+.=+.+|.-|.|.
T Consensus       341 ~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~  376 (419)
T TIGR03378       341 DVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPS  376 (419)
T ss_pred             CcCCCcchhhhcchhhcCCChhhhcCceEccccCcc
Confidence            11  2344444433322  34555556677777764

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.48  E-value=8.9e-05  Score=73.41  Aligned_cols=35  Identities=37%  Similarity=0.519  Sum_probs=31.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ++.|||||||||++|+-||.+.||.|.++++|=-+
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            45699999999999999999999999999998653

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.40  E-value=0.00018  Score=66.63  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=37.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      +.--|||||+||+||+|+-.+-..|-.|++||++...||..
T Consensus         8 ~lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS   48 (477)
T KOG2404|consen    8 ELSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS   48 (477)
T ss_pred             cCCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence            33369999999999999999999998899999999999975

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.39  E-value=0.0016  Score=61.69  Aligned_cols=43  Identities=19%  Similarity=0.310  Sum_probs=37.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~t   63 (407)
                      ....+-|||+|++||++|..|-|.    |.++.+||--+..||..-.
T Consensus        21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG   67 (587)
T COG4716          21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG   67 (587)
T ss_pred             ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence            345689999999999999999764    7899999999999997643

>PRK09897 hypothetical protein; Provisional

Probab=97.30  E-value=0.00026  Score=72.21  Aligned_cols=41  Identities=12%  Similarity=0.026  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCC-Ccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYG-SHFSS   63 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~G-G~~~t   63 (407)
                      .+|+|||+|.+|+++|..|.+.+  .+|+|+|++..+| |...+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays   45 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS   45 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence            58999999999999999998865  4899999999999 65433

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.25  E-value=0.00022  Score=65.91  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=37.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (407)
                      ..-..||.||||||+.||+.|+.|.-.  +.+|.|||+...++=..
T Consensus        44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq   89 (453)
T KOG2665|consen   44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ   89 (453)
T ss_pred             cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee
Confidence            444579999999999999999998766  99999999988776433

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.20  E-value=0.00041  Score=68.60  Aligned_cols=51  Identities=12%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (407)
                      .+.+.+.+.+++.|.++++++.|++|..   ++. +.|++.+|+++.||.||+..
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~  237 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGI  237 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECC
Confidence            4556677777889999999999999964   233 45778899999999999543

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.00043  Score=67.39  Aligned_cols=47  Identities=30%  Similarity=0.458  Sum_probs=37.8

Q ss_pred             CCCCCCCCCC--CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413            8 SELPVPPYPP--IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus         8 ~~~~~~~~~~--~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .-.|+||.+.  ...+.|||||||||++|+-||++-||-|.+.++|-.+
T Consensus        12 ~s~~~~Rr~~~~s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   12 TSFPLPRRCVFSSSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccCcchhhhhcccCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            3456888553  2245799999999999999999999999988888664

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.15  E-value=0.00014  Score=63.38  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=36.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (407)
                      -||||||+|-+||+||+..+++  ..+|.++|+.-.+||-++
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            5999999999999999999965  689999999999998665

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.06  E-value=0.00054  Score=68.79  Aligned_cols=51  Identities=16%  Similarity=0.155  Sum_probs=39.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .++.+.+.+.++..|.+++++++|++|..   ++++..|.+ +++++.||.||+.
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a  241 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVA  241 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEEC
Confidence            46777787888899999999999999953   444456654 5567999999954

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.05  E-value=0.00072  Score=67.52  Aligned_cols=37  Identities=14%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +++.+|||||||++|+.+|..|.+.+.+|+|+|++++
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            4567999999999999999999988899999999886

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.02  E-value=0.00083  Score=68.16  Aligned_cols=38  Identities=32%  Similarity=0.408  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~   57 (407)
                      ...||.||||||-+|++.|++|++. -.+|++|||....
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            4579999999999999999999987 6899999997665

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.01  E-value=0.00064  Score=66.84  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ||+|||+|++||++|+.|++. ++|+||=|...-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            899999999999999999999 999999887665

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.95  E-value=0.00084  Score=66.25  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=38.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+++|||+|..||.+|..|++.|++|+++|+.+++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            5899999999999999999999999999999999999875

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.92  E-value=0.00095  Score=66.93  Aligned_cols=48  Identities=13%  Similarity=0.132  Sum_probs=38.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .++.+.+.+.+++.|.++++++.|++|.    ..   .|++++|+++.+|.||+.
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a  236 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEG  236 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEEC
Confidence            3567777788888999999999999984    22   355678888999999853

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.92  E-value=0.0013  Score=61.79  Aligned_cols=43  Identities=23%  Similarity=0.252  Sum_probs=39.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+||..|||+|-+|+++|++.+..|.+|.++|..-++||-+-.
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn   61 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN   61 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence            4799999999999999999999999999999999999997643

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00098  Score=62.26  Aligned_cols=33  Identities=36%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~   53 (407)
                      -+||.||||+|-+||+||-..+.-|++|.+||-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            469999999999999999999999999999986

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.68  E-value=0.0016  Score=60.64  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      --|.||||||+|+-||+.++++|..|.+.|-++.=+-
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~T   40 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGT   40 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCC
Confidence            4589999999999999999999999999999876553

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.48  E-value=0.0031  Score=53.74  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=30.2

Q ss_pred             EEECCChhHHHHHHHHhhC-----CCeEEEEccCCCCC-Cccc
Q 015413           26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYG-SHFS   62 (407)
Q Consensus        26 vVIGaGl~GL~aA~~La~~-----G~~VlvlE~~~~~G-G~~~   62 (407)
                      +|||+|.+|++++..|.+.     ..+|+|+|++.. | |...
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~   42 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAY   42 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccC
Confidence            5999999999999999887     579999999666 6 5443

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.48  E-value=0.01  Score=56.94  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++.+.+|   ...+.++|.+.+.+.|++++.+++|+.|..+  ++++++|.+.+| +++||+||+
T Consensus       126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~  187 (337)
T TIGR02352       126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVL  187 (337)
T ss_pred             EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEE
Confidence            5566666   4788899999999999999999999999876  677778886666 899999994

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=96.46  E-value=0.039  Score=53.70  Aligned_cols=114  Identities=19%  Similarity=0.197  Sum_probs=70.2

Q ss_pred             cCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHH
Q 015413          206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF  285 (407)
Q Consensus       206 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al  285 (407)
                      ...|..+||++.++++...+-+..+....+|.++.   .+      ..+.-.+...+..+   | .+-++||...|++.|
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~i------~a~~G~vSla~a~~---g-l~sV~GGN~qI~~~l  134 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---NI------HAFAGLVSLAGATG---G-LWSVEGGNWQIFEGL  134 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---ch------hhhhhheeeeeccC---C-ceEecCCHHHHHHHH
Confidence            45688999999999988886555554445676631   12      22333333223211   2 568999999999987


Q ss_pred             HHHHHhcCcEEEeCCceeEEEEecCCCc-EEEEEeCC--CcEE-EcCEEEE-CCCC
Q 015413          286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQDI-LSHKLVL-DPSF  336 (407)
Q Consensus       286 ~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~--G~~i-~Ad~VI~-~p~~  336 (407)
                      .+   .-|+++ +++.|++|.....++. ...|...+  +... ..|.||+ +|-.
T Consensus       135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~  186 (368)
T PF07156_consen  135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ  186 (368)
T ss_pred             HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence            65   578899 9999999943212332 23444332  2223 3599995 5653

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.37  E-value=0.0043  Score=59.66  Aligned_cols=40  Identities=30%  Similarity=0.551  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC----CCeEEEEccC--CCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPN--PFYGS   59 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~--~~~GG   59 (407)
                      ...|||||+|||+.|++.|+.|..+    -+||++||..  +.+|+
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~   79 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD   79 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence            3479999999999999999999864    5799999998  44444

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.35  E-value=0.0041  Score=54.56  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||.|..||..|+.||++|++|+-+|.+..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            589999999999999999999999999999864

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.33  E-value=0.0044  Score=60.87  Aligned_cols=60  Identities=13%  Similarity=0.179  Sum_probs=45.2

Q ss_pred             EeecCC----cchHHHHHHHHHHhc-CcEEEeCCceeEEEEecCCCcEEEEEeC-----CCcEEEcCEEEEC
Q 015413          272 IYPIYG----QGELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLD  333 (407)
Q Consensus       272 ~~p~gG----~~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----~G~~i~Ad~VI~~  333 (407)
                      .+...|    .++|.+.|.+.+... |.++++++.|+.|.+. ++|+ +.|.+.     +.++++|+.|++.
T Consensus       170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~-~dg~-W~v~~~~~~~~~~~~v~a~FVfvG  239 (488)
T PF06039_consen  170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRN-GDGR-WEVKVKDLKTGEKREVRAKFVFVG  239 (488)
T ss_pred             eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEEC-CCCC-EEEEEEecCCCCeEEEECCEEEEC
Confidence            355556    488999998888876 9999999999999987 3554 455532     3356999999863

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.25  E-value=0.0049  Score=60.14  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~  335 (407)
                      .+.+.+.+.+++.|.++++++.|++|.    ++   .|.+.+|+++.+|.||+.+.
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G  240 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG  240 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence            466777777888999999999999884    23   46667899999999995443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.20  E-value=0.006  Score=59.69  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV  331 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI  331 (407)
                      .++++...+..++.|++|+++++|++|..   +    +|++.+|+ +|.|+.||
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv  255 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV  255 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence            45666667788899999999999999963   2    46667777 49999999

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.13  E-value=0.017  Score=56.43  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~  337 (407)
                      .-.+.+.|.+.++.+|++|++++.|..|+..  ++.+.+|.+++|.++.||+||+.|..-
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCcc
Confidence            4566788888889999999999999999986  666678999999999999999877654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.05  E-value=0.0073  Score=59.72  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=35.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            369999999999999999999999999999999987654

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.04  E-value=0.0034  Score=62.28  Aligned_cols=39  Identities=21%  Similarity=0.387  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      +|||+|||||-+|.-||..-+-.|.+|.++|++|.--|-
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT  105 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT  105 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence            499999999999999999999999999999999986653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.84  E-value=0.012  Score=51.44  Aligned_cols=33  Identities=30%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||+|..|...|..++++|++|+++|.+..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            389999999999999999999999999999654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.83  E-value=0.011  Score=50.42  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||||-.|.++|..|+++|++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999876

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.83  E-value=0.011  Score=58.27  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~----G~~VlvlE~~~~~GG~~~   62 (407)
                      +++|+|||+|.+|+..|..|.+.    ++ +.|+|++...|+-..
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia   44 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA   44 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence            37899999999999999999775    33 999999999987654

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=95.74  E-value=0.0068  Score=55.66  Aligned_cols=41  Identities=7%  Similarity=0.177  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC------CeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G------~~VlvlE~~~~~GG~~~   62 (407)
                      ...++|||+|+.|..+|++|++.+      ..++++|++...||...
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            368999999999999999999998      89999999999988654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.67  E-value=0.014  Score=57.24  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .+.+.+.+.++..|.+++++++|++|..+  ++. +.|++.+|+++.||.||+.
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a  234 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAA  234 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEEC
Confidence            45666777778899999999999999864  333 4677789999999999954

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.65  E-value=0.013  Score=59.51  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4699999999999999999999999999998864

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.61  E-value=0.015  Score=56.97  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .+|+|||+|..|+-+|..|++.|++|+++|+.+++..+
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence            36999999999999999999999999999999887644

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.59  E-value=0.069  Score=52.43  Aligned_cols=58  Identities=24%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+++.+|.   ..+.++|.+.+.. |++++.+++|++|+.+  +++ ++|++.+|.+++||+||+
T Consensus       124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~  184 (381)
T TIGR03197       124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL  184 (381)
T ss_pred             eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence            55676774   6788999888888 9999999999999875  454 578888888899999883

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=95.58  E-value=0.014  Score=55.59  Aligned_cols=44  Identities=9%  Similarity=-0.007  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSL   64 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~t~   64 (407)
                      ....|.|||+|.+|+.+|..|-|  .+.+|.++|+.+.++|..+.-
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            34589999999999999998877  479999999999999998753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.47  E-value=0.02  Score=57.44  Aligned_cols=39  Identities=21%  Similarity=0.066  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~  196 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE  196 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC
Confidence            369999999999999999999999999999999886543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.44  E-value=0.011  Score=57.20  Aligned_cols=36  Identities=31%  Similarity=0.454  Sum_probs=27.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~   57 (407)
                      .||+|+||.|.++|+.|+.|...+ .+++.||+++..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            589999999999999999999887 999999998753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.37  E-value=0.019  Score=58.16  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~  217 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP  217 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence            4799999999999999999999999999999988644

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.0089  Score=56.26  Aligned_cols=40  Identities=20%  Similarity=0.345  Sum_probs=34.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ..|||+|||+|.+|-+||.+-||+|.+.=++  .+|.||-..
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl  249 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL  249 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence            3599999999999999999999999987665  357888654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.27  E-value=0.021  Score=57.68  Aligned_cols=34  Identities=26%  Similarity=0.132  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .|.|||.|.+|++||..|+++|++|++.|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            3899999999999999999999999999998764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.25  E-value=0.023  Score=61.49  Aligned_cols=54  Identities=13%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (407)
                      +..+.+.+.++..|.+|++++.|++|..+ ..+....|.+.+|+++.||.||+.+
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~-~~~~~~~v~~~dG~~i~~D~Vv~A~  241 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQE-GVEARKTMRFADGSELEVDFIVFST  241 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEec-CCCceEEEEECCCCEEEcCEEEECC
Confidence            34556677778899999999999999753 1234457778899999999999543

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.25  E-value=0.022  Score=57.43  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            4799999999999999999999999999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.21  E-value=0.02  Score=54.50  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +|.|||+|+-|...|..|+++|++|+++|++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.20  E-value=0.029  Score=53.63  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +....|.|||+|.-|...|..|+++|++|+++.++.
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            444579999999999999999999999999998864

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.19  E-value=0.024  Score=47.69  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=29.0

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      |+|+|+|-.|+..|++|+++|++|.++-++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.07  E-value=0.025  Score=56.21  Aligned_cols=35  Identities=29%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ...|.|||.|..|+..|..|+++|++|+++|.+..
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            35699999999999999999999999999998654

>TIGR02053 MerA mercuric reductase

Probab=95.06  E-value=0.026  Score=56.97  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence            47999999999999999999999999999999887643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06370 mercuric reductase; Validated

Probab=95.01  E-value=0.032  Score=56.39  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            47999999999999999999999999999999988764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.99  E-value=0.031  Score=52.70  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|++|+++|.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            369999999999999999999999999999875

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=94.97  E-value=0.03  Score=56.38  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4799999999999999999999999999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.89  E-value=0.037  Score=55.63  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +...|+|+|+|..|+.+|..|++.|++|++.|+++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            34679999999999999999999999999999975

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.88  E-value=0.032  Score=56.47  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence            47999999999999999999999999999999987654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.85  E-value=0.034  Score=56.12  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  210 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG  210 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence            46999999999999999999999999999999987543

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.84  E-value=0.034  Score=56.22  Aligned_cols=38  Identities=11%  Similarity=0.021  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~  210 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN  210 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            37999999999999999999999999999998876543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.83  E-value=0.028  Score=60.55  Aligned_cols=52  Identities=13%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 015413          281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (407)
Q Consensus       281 l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~  335 (407)
                      +.+.+.+.++..|.++++++.|++|..   +++..+|++++|+++.||.||+.+.
T Consensus       184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G  235 (785)
T TIGR02374       184 AGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAG  235 (785)
T ss_pred             HHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCC
Confidence            445566777889999999999999964   3455678889999999999995443

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.81  E-value=0.036  Score=56.04  Aligned_cols=38  Identities=18%  Similarity=0.134  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~  212 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG  212 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC
Confidence            46999999999999999999999999999999987543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.81  E-value=0.034  Score=55.79  Aligned_cols=38  Identities=11%  Similarity=0.049  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~  186 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL  186 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh
Confidence            36999999999999999999999999999999987643

>PRK07846 mycothione reductase; Reviewed

Probab=94.80  E-value=0.036  Score=55.78  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~  203 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR  203 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999988753

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=94.80  E-value=0.036  Score=55.91  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999988754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.74  E-value=0.04  Score=55.61  Aligned_cols=38  Identities=24%  Similarity=0.149  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  207 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL  207 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc
Confidence            46999999999999999999999999999999988753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.66  E-value=0.083  Score=46.59  Aligned_cols=51  Identities=22%  Similarity=0.166  Sum_probs=39.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+-|.+.++.++..+++++.|++|..+  +++ +.|++.++++++||+||+
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVl  132 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVL  132 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEE
Confidence            446667777778888889999999999997  444 789988888999999994

...

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.65  E-value=0.046  Score=55.18  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            46999999999999999999999999999999987653

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.65  E-value=0.034  Score=52.39  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            489999999999999999999999999998754

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.64  E-value=0.043  Score=51.67  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .|.|||+|..|..-|..|+++|++|+++|.++..
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            6999999999999999999999999999988653

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.64  E-value=0.048  Score=51.48  Aligned_cols=34  Identities=26%  Similarity=0.249  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3469999999999999999999999999999874

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.59  E-value=0.042  Score=54.84  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~  173 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL  173 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence            479999999999999999999999999999998874

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=94.52  E-value=0.15  Score=50.37  Aligned_cols=33  Identities=27%  Similarity=0.464  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      |||+|||+|++|+++|..|+++|++|+++|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            699999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.51  E-value=0.043  Score=49.71  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +++|||+|--|.+.|..|++.|+.|+++|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            689999999999999999999999999999754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.45  E-value=0.044  Score=59.10  Aligned_cols=36  Identities=22%  Similarity=0.180  Sum_probs=33.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .|+|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~  177 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA  177 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence            699999999999999999999999999999888644

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.39  E-value=0.047  Score=51.28  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            3699999999999999999999999999997654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=94.38  E-value=0.057  Score=54.78  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  221 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA  221 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence            47999999999999999999999999999999987543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.23  E-value=0.054  Score=55.56  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            379999999999999999999999999999988774

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.17  E-value=0.039  Score=51.35  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=38.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC--------CCCCCcccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS   65 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~--------~~~GG~~~t~~   65 (407)
                      -+|+|||+|..|.-||....--|-+|++||.|        +.+|||..+..
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence            47999999999999999999999999999999        66788877654

>TIGR03452 mycothione_red mycothione reductase

Probab=94.13  E-value=0.064  Score=54.03  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999988754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.11  E-value=0.059  Score=51.48  Aligned_cols=33  Identities=36%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||+|..|..-|..++++|++|+++|.++.
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            599999999999999999999999999998753

>PRK04148 hypothetical protein; Provisional

Probab=94.04  E-value=0.051  Score=44.67  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..+++||.| .|...|..|++.|++|+.+|-+..
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 888889999999999999999877

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.00  E-value=0.08  Score=53.57  Aligned_cols=39  Identities=21%  Similarity=0.196  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence            369999999999999999999999999999999877653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.00  E-value=0.06  Score=51.94  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ++.|||+|..||+.|+.||+.|++|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            58999999999999999999999999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.99  E-value=0.067  Score=50.50  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3599999999999999999999999999998764

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.99  E-value=0.065  Score=53.93  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|||||+|..|+-+|..|++.|.+|++++++++
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            3799999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=93.98  E-value=0.067  Score=53.66  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            4699999999999999999999999999999887654

>PRK10262 thioredoxin reductase; Provisional

Probab=93.84  E-value=0.079  Score=50.66  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999998875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.84  E-value=0.089  Score=45.29  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|+|+|-.|+.||..|.+.|.+|+++|.+.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            469999999999999999999999999999863

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=93.78  E-value=0.072  Score=57.77  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .++|||+|+.|+-+|..|++.|.+|+|+|..+++-.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~  182 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA  182 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence            589999999999999999999999999999987644

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=93.78  E-value=0.076  Score=55.81  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=34.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      +|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~  350 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL  350 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence            6999999999999999999999999999999998753

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=93.76  E-value=0.081  Score=53.21  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~  203 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR  203 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence            3599999999999999999999999999999888643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=93.74  E-value=0.16  Score=50.42  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      ||||||+|++||+||+.++++|.+|+||||.+.+||
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence            899999999999999999999999999999999999

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PTZ00058 glutathione reductase; Provisional

Probab=93.74  E-value=0.074  Score=54.93  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~  274 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR  274 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            4699999999999999999999999999999998764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.70  E-value=0.077  Score=54.42  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      -+|+|||||.+|+-+|..|++.|++|+++++.+++
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            37999999999999999999999999999998876

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.63  E-value=0.083  Score=50.01  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|-.|...|..|+++|++|++++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            48999999999999999999999999999853

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.56  E-value=0.084  Score=54.67  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      -.|+|||+|..|+-.|..|++.|.+|+++++.+++
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            46999999999999999999999999999998865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=93.55  E-value=0.094  Score=52.53  Aligned_cols=38  Identities=16%  Similarity=0.159  Sum_probs=35.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++|||+|.-|+=.|-.+++-|.+|+|+|+++++--..
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~  212 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE  212 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC
Confidence            49999999999999999999999999999999987633

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.46  E-value=0.1  Score=49.76  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~   55 (407)
                      +|.|||+|..|+++|+.|+++|  ..|.++|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            5999999999999999999999  5899999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.44  E-value=0.1  Score=49.68  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|++|+++|.+.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999765

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.43  E-value=0.082  Score=52.56  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||.|..|+..|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02507 glutathione reductase

Probab=93.41  E-value=0.098  Score=53.39  Aligned_cols=36  Identities=14%  Similarity=0.052  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++-
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l  239 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL  239 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence            369999999999999999999999999999988754

>PRK12831 putative oxidoreductase; Provisional

Probab=93.41  E-value=0.094  Score=53.01  Aligned_cols=34  Identities=18%  Similarity=0.063  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999998764

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=93.39  E-value=0.52  Score=46.10  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=45.9

Q ss_pred             eEeecC-CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC-cEEEcCEEEE
Q 015413          271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-~~i~Ad~VI~  332 (407)
                      ..||.- -++++.++|.+.++..|++|+++++|++|  +  +++ ..|.+.++ ++++||+||+
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl  135 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL  135 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence            578855 58999999999999999999999999999  3  333 46776433 5699999994

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.39  E-value=0.09  Score=51.05  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~   56 (407)
                      -.|+|||+|..|+-+|..|++.|.+ |+|++++++
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            3699999999999999999999987 999998765

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.37  E-value=0.12  Score=48.84  Aligned_cols=33  Identities=36%  Similarity=0.456  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|.|||+|..|...|..|+++|++|.++|++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            359999999999999999999999999999875

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.36  E-value=0.14  Score=44.03  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=30.3

Q ss_pred             CcccEEEECCCh-hHHHHHHHHhhCCCeEEEEccC
Q 015413           21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl-~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ....|+|||+|- .|..+|..|.+.|.+|.++.++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            346899999995 7999999999999999999976

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.32  E-value=0.12  Score=51.73  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            36999999999999999999999999999999887644

>PRK06116 glutathione reductase; Validated

Probab=93.28  E-value=0.11  Score=52.27  Aligned_cols=36  Identities=11%  Similarity=0.041  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence            479999999999999999999999999999988764

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.27  E-value=0.11  Score=52.54  Aligned_cols=43  Identities=28%  Similarity=0.398  Sum_probs=37.0

Q ss_pred             CCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           10 LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        10 ~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      -|..+.|.+.++.  |.|+|.|-+|.++|..|.+.|.+|.+.|++
T Consensus         5 ~~~~~~~~~~~~~--v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141          5 VPLSALPQELSGR--VLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             ChhhhcccccCCe--EEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            3566777776654  899999999999999999999999999975

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.22  E-value=0.096  Score=50.58  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +|.|||+|.-|...|..|+++|++|++++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            59999999999999999999999999999853

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.13  E-value=0.13  Score=48.95  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (407)
                      .|.|||+|..|+..|+.|+..|+ +|+++|.+..
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            68999999999999999999887 8999998544

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=93.07  E-value=0.28  Score=50.36  Aligned_cols=59  Identities=22%  Similarity=0.288  Sum_probs=46.0

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G--~~i~Ad~VI~  332 (407)
                      +.++ .|   ...+..++++.+...|++|+.+++|++|+.+  ++++++|++.   +|  .+++|++||.
T Consensus       118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn  184 (516)
T TIGR03377       118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN  184 (516)
T ss_pred             EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence            5556 34   3567788889999999999999999999986  6777777753   34  3689999993

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=93.03  E-value=0.29  Score=49.76  Aligned_cols=40  Identities=15%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (407)
                      +||||||||+.|+++|+.|++.  |.+|+|||+.+.+|...+
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S   42 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESS   42 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhC
Confidence            6999999999999999999997  999999999887774433

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=93.02  E-value=0.1  Score=48.41  Aligned_cols=33  Identities=15%  Similarity=0.088  Sum_probs=26.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CeEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G-------~~VlvlE~~   54 (407)
                      +.+++|||+|..||+.|..+.+.+       .+|+|++-+
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr   42 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR   42 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence            468999999999999998888855       467777654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.99  E-value=0.11  Score=52.33  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~   56 (407)
                      ..|.|||+|..||..|+.||++  |++|+.+|.+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            3599999999999999999998  588999997643

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.98  E-value=0.13  Score=48.36  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            47999999999999999999999999999998765

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02546 glutathione reductase

Probab=92.97  E-value=0.13  Score=53.09  Aligned_cols=38  Identities=8%  Similarity=-0.040  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~  290 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG  290 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc
Confidence            47999999999999999999999999999999887643

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.96  E-value=0.12  Score=49.02  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~   53 (407)
                      .|.|||+|..|...|..|+++|++|+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999987

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.95  E-value=0.12  Score=49.09  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .+|.|||+|--|...|+.|+++|.+|+++.+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            36999999999999999999999999999986

>PRK13748 putative mercuric reductase; Provisional

Probab=92.85  E-value=0.14  Score=53.13  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++++++.+
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l  305 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLF  305 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence            36999999999999999999999999999986543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=92.79  E-value=0.15  Score=48.86  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +|.|||+|..|...|..|+++|++|.+++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=92.77  E-value=0.12  Score=45.83  Aligned_cols=42  Identities=17%  Similarity=0.301  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEcc---CCC-CCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~---~~~-~GG~~~t   63 (407)
                      .-.|+|||+|.++-+||++++|+-.|-+++|-   |+. +||-..|
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT   53 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT   53 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence            34899999999999999999999999999994   444 3776554

>PRK14694 putative mercuric reductase; Provisional

Probab=92.70  E-value=0.16  Score=51.44  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            369999999999999999999999999998743

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.65  E-value=0.18  Score=43.13  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|-+||.|..|...|..|.++|++|.+++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            468999999999999999999999999999764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14727 putative mercuric reductase; Provisional

Probab=92.53  E-value=0.17  Score=51.31  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++++...
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  222 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL  222 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            3699999999999999999999999999997543

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.45  E-value=0.16  Score=49.63  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+|+|||+|-.|+.+|..|.+.|.+|+++|++.
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            569999999999999999999999999999863

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.44  E-value=0.19  Score=48.25  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|--|...|..|+++|++|++++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999864

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.41  E-value=0.1  Score=49.37  Aligned_cols=53  Identities=21%  Similarity=0.114  Sum_probs=43.1

Q ss_pred             CCCCCCCCCCCCCCCCC----CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413            4 NESESELPVPPYPPIEP----TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus         4 ~~~~~~~~~~~~~~~~~----~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.||.||--.|+|.-.    +-.||.|||+|-+|.-||+.||--=.-|++||=.+.
T Consensus       332 GE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         332 GEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             chHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            36788888878887533    246999999999999999999977778999996554

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=92.37  E-value=0.39  Score=50.05  Aligned_cols=52  Identities=23%  Similarity=0.308  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-d~VI~  332 (407)
                      ..+.++|.+.++..|++|+++++|++|..+  ++++++|... +++  +++| +.||+
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl  272 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL  272 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence            468889999999999999999999999886  7888888653 233  4789 88884

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.37  E-value=0.17  Score=49.32  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=38.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccC--------CCCCCcccccchh
Q 015413           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN--------PFYGSHFSSLSIA   67 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~--------~~~GG~~~t~~~~   67 (407)
                      .+|+|||+|..|.++|..|++.| .+|++.+|+        ...+++..+..++
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD   55 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD   55 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence            47999999999999999999999 999999998        5556666665544

>PRK07121 hypothetical protein; Validated

Probab=92.34  E-value=0.41  Score=48.75  Aligned_cols=55  Identities=27%  Similarity=0.386  Sum_probs=43.8

Q ss_pred             CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 015413          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (407)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-d~VI~  332 (407)
                      +...+.+.|.+.+++.|++|+++++|++|..+ +++++++|+.. +++  +++| +.||+
T Consensus       175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~~~~~i~a~k~VVl  233 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVD-DDGRVVGVEARRYGETVAIRARKGVVL  233 (492)
T ss_pred             chHHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence            34578899999999999999999999999986 35788888754 333  4789 88884

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=92.33  E-value=0.62  Score=46.15  Aligned_cols=60  Identities=15%  Similarity=0.192  Sum_probs=43.5

Q ss_pred             ceEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 015413          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL  332 (407)
Q Consensus       270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-----~~i~Ad~VI~  332 (407)
                      +++++..|.   ..+.++|.+.++..|++++.+++|++|..+  ++.+ .|.+.++     .+++||+||.
T Consensus       185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a~~vV~  252 (410)
T PRK12409        185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEFDGVVV  252 (410)
T ss_pred             EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEecCEEEE
Confidence            355666554   455678889899999999999999999875  4543 4433332     3799999994

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.32  E-value=0.2  Score=49.12  Aligned_cols=41  Identities=17%  Similarity=0.376  Sum_probs=34.4

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        15 ~~~~~~~~~DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +.++++....|.||| .|+-|-..|..|+++|+.|.++++++
T Consensus        91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            334444456799999 89999999999999999999999864

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.26  E-value=0.25  Score=48.39  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=37.6

Q ss_pred             CCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 015413           12 VPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        12 ~~~~~~~~~~~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .|+.+.++.+...|+|.|+ |.-|...+..|.++|++|+.+.++
T Consensus        11 ~~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         11 LEREPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             cCCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            3556777777788999998 999999999999999999999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.24  E-value=0.23  Score=39.49  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.8

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      |||||.|-.|...|..|.+.+.+|+++|.+..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            69999999999999999998889999999854

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.22  E-value=0.22  Score=47.47  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|+++|++|.+.+++.
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            469999999999999999999999999999875

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=92.09  E-value=0.13  Score=40.29  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+...|+|||+|-.|..-+..|.+.|.+|+|+-...
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            345689999999999999999999999999998875

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.97  E-value=0.2  Score=51.21  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      +++|||+|..|+-.|..|++.|.+|++++++
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            7999999999999999999999999999974

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=91.93  E-value=0.19  Score=47.12  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||.|+-|...|..|+++|++|++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=91.92  E-value=0.22  Score=44.38  Aligned_cols=34  Identities=12%  Similarity=0.095  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .-.|+|||||-.|+..+..|.+.|.+|+|+..+.
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3579999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.87  E-value=0.2  Score=50.54  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (407)
                      -.|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            479999999999999999999998 8999998765

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=91.80  E-value=0.2  Score=41.43  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=27.9

Q ss_pred             EEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        25 VvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ++|+|+|+-+...|..++.-|++|+|+|-+..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999854

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.78  E-value=0.2  Score=49.38  Aligned_cols=32  Identities=22%  Similarity=0.239  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||+|..|+..|..|+. |++|+++|.+..
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            48999999999999988885 999999998654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.74  E-value=0.21  Score=50.40  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|+|.|.+|+++|..|.+.|++|.+.|.++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=91.71  E-value=0.26  Score=41.95  Aligned_cols=33  Identities=15%  Similarity=0.132  Sum_probs=29.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLD   52 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE   52 (407)
                      .+.-.|+|||||-.|+.-|..|.+.|.+|+|+.
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            345679999999999999999999999999994

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=91.68  E-value=0.23  Score=50.56  Aligned_cols=31  Identities=13%  Similarity=0.132  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            6999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.65  E-value=0.25  Score=43.93  Aligned_cols=33  Identities=12%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~   53 (407)
                      +...|+|||||-.|...|..|.++|.+|+|+++
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            456799999999999999999999999999975

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=91.63  E-value=0.18  Score=49.59  Aligned_cols=43  Identities=14%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEEccCCCCCCc
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYGSH   60 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~-----G~~VlvlE~~~~~GG~   60 (407)
                      +++..+||||||||.+|+.+|+.|+..     .++++++|...+.==|
T Consensus        14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r   61 (486)
T COG2509          14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQR   61 (486)
T ss_pred             HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhh
Confidence            445679999999999999999999853     7899999986654433

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=91.61  E-value=0.59  Score=46.74  Aligned_cols=49  Identities=20%  Similarity=0.314  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (407)
                      .+-+.|.+.+++.|++|+.+++|++|+.+  ++++++|+ ++|++++||.||
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI  157 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVI  157 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEE
Confidence            44456777788899999999999999876  66666665 577789999999

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=91.59  E-value=0.15  Score=41.70  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ....+|.|||+|=.|-..|..|.++|+.|.-+..++.
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~   44 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP   44 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence            3457899999999999999999999999998876643

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.55  E-value=0.38  Score=42.69  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=31.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      +....++|+|.|-.|..+|..|.+.|.+|++.|.+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            34456999999999999999999999999999876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=91.54  E-value=0.19  Score=47.14  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CC-eEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~-G~-~VlvlE~~~~   56 (407)
                      .++.|+|||||-+|+..|+.+.++ |. +|-|+|-.++
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            579999999999999999999876 54 7888887654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=91.45  E-value=0.24  Score=50.32  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La---~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-.|..++   +.|.+|+++|+++++..
T Consensus       188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~  227 (486)
T TIGR01423       188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR  227 (486)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence            46999999999999996554   45999999999998764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.39  E-value=0.23  Score=50.27  Aligned_cols=34  Identities=12%  Similarity=-0.184  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|+|+|.|-+|.+||..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            3699999999999999999999999999997654

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=91.31  E-value=0.27  Score=49.06  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             cEEEECCChhHHHHHHHHhh--------------CCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~--------------~G~~VlvlE~~~~~GG~   60 (407)
                      .++|||+|..|+-.|..|+.              .|.+|+++|+.+++...
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence            79999999999999999875              58999999999887553

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.31  E-value=0.32  Score=48.85  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ..++|+|.|-+|+++|..|++.|++|++.|.++..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            36999999999999999999999999999987653

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.25  E-value=0.25  Score=50.35  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|.|||+|..|...|..|+++|++|+++|++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3599999999999999999999999999998744

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.23  E-value=0.27  Score=47.17  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ++.|||+|--|.+.|..|+++|++|.++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            48999999999999999999999999998853

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=91.18  E-value=0.75  Score=45.24  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      +.++||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~   41 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP   41 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence            45689999999999999999999999999999998753

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=91.16  E-value=2.1  Score=45.00  Aligned_cols=54  Identities=28%  Similarity=0.444  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..+..+|++.++..|++++.+++|++|..+..++++++|++   .+|+  +++||.||.
T Consensus       232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn  290 (627)
T PLN02464        232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN  290 (627)
T ss_pred             HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence            47788899999999999999999999987511366777765   2344  589999994

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=91.13  E-value=2.3  Score=43.59  Aligned_cols=51  Identities=27%  Similarity=0.301  Sum_probs=39.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC---Cc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---GQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G~--~i~Ad~VI~  332 (407)
                      ..+..++++.+...|++++.+++|++|..+  ++. ++|++.+   |+  +++|+.||.
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~~VVn  210 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRARALVN  210 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcCEEEE
Confidence            456677778888999999999999999875  444 4666543   53  689999994

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=91.10  E-value=0.75  Score=47.90  Aligned_cols=52  Identities=25%  Similarity=0.267  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A-d~VI~  332 (407)
                      ..|.++|.+.++..|++|+++++|+++..+  ++++++|...+ |+  ++.| +.||+
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl  276 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL  276 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence            468888999899999999999999999876  78888987643 33  4776 56884

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=91.08  E-value=0.25  Score=43.98  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ...|.|||||+.|.-.|-..+.+|+.|.+.|++.-
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            45799999999999999999999999999999854

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=91.00  E-value=0.91  Score=45.20  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +|||+|||+|++|++||..|+++|++|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999864

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.98  E-value=0.32  Score=48.87  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|+|+|+|-+|+++|..|+++|++|++.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            358999999999999999999999999999764

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=90.96  E-value=0.98  Score=44.27  Aligned_cols=53  Identities=23%  Similarity=0.379  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      ..+.+.+.+.++.....-.....|+.|..+  ++++++|.+.+|+++.||.||+.
T Consensus        95 ~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVla  147 (392)
T PF01134_consen   95 DKYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLA  147 (392)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-
T ss_pred             HHHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEEe
Confidence            445566667777756555578999999987  89999999999999999999953

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=90.96  E-value=0.29  Score=49.88  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|.-|..-|..|+++|++|+++|++.
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999864

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=90.93  E-value=0.71  Score=48.13  Aligned_cols=53  Identities=21%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEcCE-EE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LV  331 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad~-VI  331 (407)
                      ...+...|.+.++..|++|+++++|++|.++ ++|+++||... +|+  +++|++ ||
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d-~~g~V~Gv~~~~~~~~~~i~a~~aVi  268 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITD-PDGAVVGAVVEREGRTLRIGARRGVI  268 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEEC-CCCcEEEEEEEeCCcEEEEEeceeEE
Confidence            4567777878888899999999999999986 36889998653 343  378874 87

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=90.92  E-value=0.32  Score=43.82  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=28.7

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.||| +|.-|.+.|..|+++|++|.++.++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            489997 79999999999999999999997654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.90  E-value=0.4  Score=39.60  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCe-EEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~   54 (407)
                      ...|+|||+|=+|-.++..|++.|.+ |+|+-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45799999999999999999999987 9999865

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=90.88  E-value=0.29  Score=50.01  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|.|||+|..|...|..|+++|+.|+++|++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3589999999999999999999999999998765

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.83  E-value=0.26  Score=53.03  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~   56 (407)
                      -.|||||+|..|+-+|..|.+.|.+ |++++++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999987 999998865

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.80  E-value=0.24  Score=52.86  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|.|||||..|.-.|..++++|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4599999999999999999999999999998854

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.78  E-value=0.3  Score=49.77  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            5999999999999999999999999999965

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.76  E-value=0.31  Score=47.26  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=34.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~   57 (407)
                      ++..+|+|.||-|..-|..|+.|+..+ .+++.||+....
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            456799999999999999999999875 889999998763

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.73  E-value=0.38  Score=42.68  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (407)
                      ...|+|||+|--|..+|..|+++|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4579999999999999999999998 69988875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=90.62  E-value=0.35  Score=46.00  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~   56 (407)
                      .|+|||+|..|.++|..|+..|  .++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            4899999999999999999999  58999999754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=90.46  E-value=0.94  Score=41.91  Aligned_cols=52  Identities=15%  Similarity=0.121  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-----------CCcEEEcCEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLV  331 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----------~G~~i~Ad~VI  331 (407)
                      .++.+.|.+.+...|+++++++.|..+..+ +++++.+|.+.           +..+++|+.||
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~-~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI  166 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILR-EDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV  166 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEe-CCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence            577888988889999999999999999876 24477777643           12468999999

>PRK06847 hypothetical protein; Provisional

Probab=90.45  E-value=0.89  Score=44.30  Aligned_cols=51  Identities=18%  Similarity=0.131  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+...|++|+++++|++|..+  ++. +.|++.+|+++.||.||.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence            467788888888889999999999999875  444 467778999999999994

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=90.44  E-value=0.3  Score=48.63  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ...|.|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            357999999999999999999999999999987766

>PRK06223 malate dehydrogenase; Reviewed

Probab=90.43  E-value=0.39  Score=45.65  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (407)
                      ..|.|||+|..|.+.|..|+..|. .|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            479999999999999999999876 9999998654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=90.41  E-value=0.3  Score=49.55  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .-.|+|+|+|..||.|+..+...|.+|.++|.++
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999988775

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=90.38  E-value=0.73  Score=46.16  Aligned_cols=53  Identities=25%  Similarity=0.298  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+++.|++++++++|++|+.+ +++++++|++.  +++  .+.||.||+
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~~~a~~VVl  186 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQD-DQGTVVGVVVKGKGKGIYIKAAKAVVL  186 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEEC-CCCcEEEEEEEeCCCeEEEEecceEEE
Confidence            468899999999999999999999999986 36778887653  343  368999983

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=90.33  E-value=0.33  Score=46.06  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.6

Q ss_pred             EEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        25 VvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      |.|||+|..|...|..|+..|. +|.++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999887 999999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=90.31  E-value=0.1  Score=47.80  Aligned_cols=96  Identities=14%  Similarity=0.065  Sum_probs=64.6

Q ss_pred             ecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEE-CCCCCCCCCCccchhhhhh
Q 015413          274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVL-DPSFTVPGSLASSHQQLQE  351 (407)
Q Consensus       274 p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~  351 (407)
                      -.-||..|++.|+.     .-+|+++++|++|...  + +-+.+.+++|. ...+|.||+ .|..-...+.....-.+|.
T Consensus       103 g~pgmsalak~LAt-----dL~V~~~~rVt~v~~~--~-~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~  174 (331)
T COG3380         103 GEPGMSALAKFLAT-----DLTVVLETRVTEVART--D-NDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPA  174 (331)
T ss_pred             cCcchHHHHHHHhc-----cchhhhhhhhhhheec--C-CeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchH
Confidence            34589999886653     3478999999999885  3 33789886664 468999884 4444333332122346788


Q ss_pred             hhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          352 SFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       352 ~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      .+++-.....|-++.-+++-|..|+.
T Consensus       175 ~l~~~~a~V~y~Pc~s~~lg~~q~l~  200 (331)
T COG3380         175 ALRAALADVVYAPCWSAVLGYPQPLD  200 (331)
T ss_pred             HHHHhhccceehhHHHHHhcCCccCC
Confidence            76666566667777777888887654

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.23  E-value=0.33  Score=45.71  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||.|..|...|..|+++|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            37899999999999999999999999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.21  E-value=0.33  Score=51.76  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|.|||||..|...|..++.+|++|+++|.+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=90.19  E-value=0.37  Score=45.54  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..|.|||||.-|--.|..++.+|++|++.|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            46899999999999999999988999999998

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=90.16  E-value=0.92  Score=33.45  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=33.9

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G  322 (407)
                      -..+.+.+.+..+..|.++++++.|++|..+ +++ +. |+++||
T Consensus        39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~-~~-V~~~~g   80 (80)
T PF00070_consen   39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDG-VE-VTLEDG   80 (80)
T ss_dssp             SHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTS-EE-EEEETS
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCE-EE-EEEecC
Confidence            3566777778888999999999999999987 244 54 888876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.12  E-value=0.45  Score=44.17  Aligned_cols=39  Identities=18%  Similarity=0.231  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCc
Q 015413           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH   60 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~   60 (407)
                      ...|+|||.|-.|..+|..|+++| .+++++|....--..
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sN   69 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTN   69 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccc
Confidence            357999999999999999999999 799999976554333

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.01  E-value=0.43  Score=47.96  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=33.5

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ++..+--|+|||.|-+|.++|..|.+.|++|.+.|.++
T Consensus         2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          2 LMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             ccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            44555669999999999999999999999999999865

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=89.97  E-value=1  Score=45.86  Aligned_cols=62  Identities=13%  Similarity=0.117  Sum_probs=44.0

Q ss_pred             cceEeecCC---cchHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEE---eCCCc--EEEcCEEEE
Q 015413          269 GALIYPIYG---QGELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVL  332 (407)
Q Consensus       269 ~~~~~p~gG---~~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~--~i~Ad~VI~  332 (407)
                      ++.+.|.++   ...+.++|++.+.. .|++++++++|+.|..+. ++. +.|+   +.+|+  +++||.||+
T Consensus       171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~  241 (497)
T PRK13339        171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFI  241 (497)
T ss_pred             eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEE
Confidence            345566665   46888999998854 589999999999998641 333 3444   33443  699999984

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=89.94  E-value=1  Score=44.32  Aligned_cols=51  Identities=24%  Similarity=0.169  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+...|++++.+++|++|..+  ++. +.|++++|++++||.||.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~  161 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA  161 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence            467788888888889999999999999875  444 467778898999999993

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=89.86  E-value=1.2  Score=43.56  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~   57 (407)
                      ||+|||||++||++|..|+++| ++|+|+|+++..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            8999999999999999999999 999999998653

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.76  E-value=0.37  Score=47.97  Aligned_cols=33  Identities=21%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|.|||-|.+|.++|..|.+.|++|.+.|.+.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            469999999999999999999999999999764

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=89.75  E-value=1  Score=43.84  Aligned_cols=53  Identities=25%  Similarity=0.224  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 015413          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (407)
Q Consensus       279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p  334 (407)
                      ..+-+.|.+.+.+.| ++|+.+++|++|..+  ++. +.|++.+|++++||.|| ++.
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~adG  160 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVGADG  160 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEEeCC
Confidence            467788888887887 999999999999875  444 46777899899999999 443

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=89.71  E-value=0.96  Score=44.51  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .+||+|||||++||++|..|+++|++|+|+|++
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            479999999999999999999999999999998

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=89.62  E-value=0.41  Score=45.31  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999999999999864

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=89.43  E-value=0.54  Score=50.32  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|.|||+|..|...|..++.+|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4699999999999999999999999999998764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=89.38  E-value=0.5  Score=44.70  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|+|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3579999999999999999999999999999884

>PRK07045 putative monooxygenase; Reviewed

Probab=89.24  E-value=1.3  Score=43.41  Aligned_cols=53  Identities=17%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHH-hcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413          280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (407)
Q Consensus       280 ~l~~al~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~  333 (407)
                      .|-+.|.+.++ ..|+++++++.|+.|+.+ +++.++.|++++|++++||.|| ++
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~g~~~~~~~vIgAD  161 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERD-ADGTVTSVTLSDGERVAPTVLVGAD  161 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-CCCcEEEEEeCCCCEEECCEEEECC
Confidence            56666776664 467999999999999986 3555567888899999999999 44

>TIGR00292 thiazole biosynthesis enzyme

Probab=89.23  E-value=1.5  Score=40.40  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCC--cEEEEEeCC-----------CcEEEcCEEE-ECC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLV-LDP  334 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~~~~-----------G~~i~Ad~VI-~~p  334 (407)
                      .++.+.|.+.+.+.|++++.++.|+.+..+  ++  ++.||.+..           ..+++|+.|| ++.
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG  167 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATG  167 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeec
Confidence            477788888888899999999999999886  44  678887532           2468999999 444

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK10015 oxidoreductase; Provisional

Probab=89.17  E-value=1.2  Score=44.46  Aligned_cols=50  Identities=18%  Similarity=0.298  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+-+.|.+.+++.|++++.++.|+.|..+  ++++++|. .++.+++||.||.
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~-~~~~~i~A~~VI~  158 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQ-AGDDILEANVVIL  158 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEE-eCCeEEECCEEEE
Confidence            34455777788899999999999999875  56766776 4566899999994

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.15  E-value=0.5  Score=46.71  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|+|+|+|.-|+.+|..|...|.+|+++|.++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            479999999999999999999999999999875

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=89.14  E-value=1.3  Score=43.80  Aligned_cols=51  Identities=14%  Similarity=0.105  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~  333 (407)
                      .+-++|.+.++..|.+|+.+++|++|+.+  ++. +.|++++|++++||.|| ++
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAd  164 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAAD  164 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEec
Confidence            56677777777789999999999999875  343 46777889899999999 54

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=89.14  E-value=0.46  Score=52.28  Aligned_cols=34  Identities=21%  Similarity=0.160  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -+|||||+|..|+-+|..+.+.|.+|+++.++++
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~  481 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK  481 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence            4799999999999999999999999999998754

>PRK06834 hypothetical protein; Provisional

Probab=89.10  E-value=1.3  Score=45.14  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~  333 (407)
                      ..+-+.|.+.++..|++|+.+++|++|+.+  ++. +.|++.+|++++||.|| ++
T Consensus       100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~--~~~-v~v~~~~g~~i~a~~vVgAD  152 (488)
T PRK06834        100 NHIERILAEWVGELGVPIYRGREVTGFAQD--DTG-VDVELSDGRTLRAQYLVGCD  152 (488)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEec
Confidence            346667777778889999999999999986  443 45777788899999999 54

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=89.02  E-value=0.64  Score=42.69  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..++|+|+|+-+...|..++..|++|+|+|.+..
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            5799999999999999999999999999997755

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=88.95  E-value=0.67  Score=44.38  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~   57 (407)
                      ..|+|||+|..|.+.|..|+..|. +|.++|.+...
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            579999999999999999999996 99999987764

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=88.93  E-value=1.3  Score=45.88  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=42.3

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad-~VI~  332 (407)
                      -..|.+.|.+.+++.|++|+++++|++|+.+  +++++||... +|+  ++.|+ .||+
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl  263 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL  263 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence            3567888888889999999999999999986  7889998753 454  37885 5773

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=88.84  E-value=1.2  Score=46.42  Aligned_cols=52  Identities=27%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC--Cc-EEEcC-EEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ-DILSH-KLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~--G~-~i~Ad-~VI~  332 (407)
                      .+|.++|.+.+++.|++|+++++|+++..+  ++++++|.+.+  ++ ++.|+ .||+
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVl  269 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVL  269 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEE
Confidence            678889998889999999999999999986  78888887643  33 37886 5773

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=88.78  E-value=1  Score=44.48  Aligned_cols=41  Identities=17%  Similarity=0.363  Sum_probs=34.5

Q ss_pred             CCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           15 YPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        15 ~~~~~~~~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +.+.+.....|+|+|| |.-|..++..|.++|++|.++.++.
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            4455555667999997 9999999999999999999998764

>TIGR00275 flavoprotein, HI0933 family

Probab=88.71  E-value=2.2  Score=42.19  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=34.5

Q ss_pred             EEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           26 IVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        26 vVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ||||||.+||+||+.|+++|++|+|||+++.+|+.+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~   37 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL   37 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence            6999999999999999999999999999999987653

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=88.69  E-value=1  Score=33.85  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEEcc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP   53 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~   53 (407)
                      ...++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35699999999999999999998 789999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.68  E-value=0.48  Score=47.73  Aligned_cols=31  Identities=16%  Similarity=0.102  Sum_probs=28.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      -.|+|+|.|.+|.+||..|.+ |.+|+|.|.+
T Consensus         7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            369999999999999999995 9999999965

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.65  E-value=0.51  Score=48.21  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|+|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus         9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          9 MVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            59999999999999999999999999999765

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=88.65  E-value=0.57  Score=44.24  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999998864

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=88.58  E-value=1.5  Score=40.71  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=38.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI~  332 (407)
                      ..+-+.|.+.+++.|+++++++.|+++..+  ++++ .|.+. ++.+++||.||.
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~  142 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG  142 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence            356677788888899999999999999886  4443 34333 456799999983

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=88.55  E-value=0.49  Score=47.77  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .+|.|||.|..|...|..|+++|++|.+.+++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998654

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=88.41  E-value=0.48  Score=50.44  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHh-hCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La-~~G~~VlvlE~~~~   56 (407)
                      -.|.|||||..|...|..++ ++|++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46999999999999999998 69999999998853

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=88.30  E-value=0.88  Score=38.15  Aligned_cols=33  Identities=12%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (407)
                      -.++|||+|..|...|..|++.| ++|.+++++.
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            46999999999999999999996 8999998764

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=88.26  E-value=0.68  Score=43.53  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ..|+|||+|-+|-++|..|++.|. +|+|++++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            469999999999999999999996 799998863

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=88.25  E-value=1.5  Score=45.55  Aligned_cols=52  Identities=15%  Similarity=0.297  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..|.++|.+.+...|++|+.+++|++++++  +|+++||..   .+|+  .+.|+.||+
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL  175 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL  175 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence            368889988888899999999999999986  789999864   2454  479999994

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK06175 L-aspartate oxidase; Provisional

Probab=88.25  E-value=1.7  Score=43.58  Aligned_cols=52  Identities=12%  Similarity=0.254  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEE-eCCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~--~i~Ad~VI~  332 (407)
                      .++.++|.+.+++ .|++|+++++|++|..+  ++++++|. ..+++  ++.|+.||+
T Consensus       128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL  183 (433)
T PRK06175        128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL  183 (433)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence            4678888877764 59999999999999876  67888865 33454  589999994

>PLN02256 arogenate dehydrogenase

Probab=88.14  E-value=0.75  Score=43.70  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...+.|||.|..|-..|..|+++|++|.+++++.
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            4579999999999999999999999999999874

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=88.10  E-value=0.49  Score=47.76  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHH-HHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~-aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus         9 ~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          9 RIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             EEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            5999999999999 59999999999999998764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=88.08  E-value=1.7  Score=45.16  Aligned_cols=52  Identities=25%  Similarity=0.363  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad-~VI~  332 (407)
                      ..+...|.+.++..|++|+++++|++|+.+  ++++++|... +|+  +++|+ .||+
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIl  263 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVIL  263 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEE
Confidence            457778888888899999999999999986  6888888754 454  37897 4774

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=88.04  E-value=0.93  Score=39.84  Aligned_cols=33  Identities=15%  Similarity=0.223  Sum_probs=29.3

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 015413           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ...++|+|+ |-.|..+|..|++.|++|.++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999996 999999999999999999999765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.01  E-value=0.52  Score=47.55  Aligned_cols=34  Identities=21%  Similarity=0.061  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -+|+|||+|.+|+-.|..|++.+++|+++.++..
T Consensus       205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~  238 (461)
T PLN02172        205 EVVVVIGNFASGADISRDIAKVAKEVHIASRASE  238 (461)
T ss_pred             CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence            4699999999999999999999999999988653

>PRK12839 hypothetical protein; Provisional

Probab=87.98  E-value=1.5  Score=45.52  Aligned_cols=53  Identities=28%  Similarity=0.365  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC--CCc-EEE-cCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ-DIL-SHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~-~i~-Ad~VI~  332 (407)
                      ..|...|.+.+.+.|++|+++++|++|..+ ++|+++||...  +|+ ++. ++.||+
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~-~~g~V~GV~~~~~~g~~~i~aak~VVL  270 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTD-KNGRVTGVRVQGPDGAVTVEATRGVVL  270 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEeCCEEEE
Confidence            467788888888999999999999999875 36888898643  444 244 477884

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=87.73  E-value=0.61  Score=49.76  Aligned_cols=33  Identities=30%  Similarity=0.321  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHh-hCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La-~~G~~VlvlE~~~   55 (407)
                      -.|.|||||..|...|..++ ++|+.|+++|.+.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            45999999999999999998 8999999999865

>PRK07190 hypothetical protein; Provisional

Probab=87.71  E-value=1.7  Score=44.17  Aligned_cols=51  Identities=14%  Similarity=0.163  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD  333 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~  333 (407)
                      .+-+.|.+.++..|++|+.++.|++|.++  ++. +.|.+.+|++++|+.|| ++
T Consensus       110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~--~~~-v~v~~~~g~~v~a~~vVgAD  161 (487)
T PRK07190        110 YVEKLLDDKLKEAGAAVKRNTSVVNIELN--QAG-CLTTLSNGERIQSRYVIGAD  161 (487)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEc--CCe-eEEEECCCcEEEeCEEEECC
Confidence            45556666777889999999999999986  333 34556788899999999 44

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=87.70  E-value=1.1  Score=44.13  Aligned_cols=35  Identities=9%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~   56 (407)
                      +..+||||||.+||.+|..|+++-  .+|+++|++++
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence            357999999999999999999984  99999999987

>PLN02712 arogenate dehydrogenase

Probab=87.61  E-value=1  Score=47.65  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ....|.|||.|.-|-..|..|.++|++|+++++++
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   85 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD   85 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34579999999999999999999999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	407
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		4e-30
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		5e-30
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		5e-30
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		8e-29
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		9e-29
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		3e-27
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		3e-27
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		1e-22

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 167/362 (46%), Gaps = 45/362 (12%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 8   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 62
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 63  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 111
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 112 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 170
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 171 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 223
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 224 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 281
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 282 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 322
Query: 381 SN 382
           SN
Sbjct: 323 SN 324

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  124 bits (311), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 167/362 (46%), Gaps = 45/362 (12%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 10  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 64
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 65  ----NPISKEERESKFGKD------RDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 113
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 114 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 172
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 173 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 225
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 226 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 283
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 284 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 324
Query: 381 SN 382
           SN
Sbjct: 325 SN 326

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY 435

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY 435

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 163/361 (45%), Gaps = 61/361 (16%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL   +LT+  N+   P   
Sbjct: 21  YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL---NLTNLYNTFK-PKEN 76
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P         S Y         R++N+D+  P+ +    + V ++ K+  ++YLE+  +
Sbjct: 77  IP---------SKYGEN------RHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVV 120
Query: 143 DATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
           + +++        L ++  +  VP +         L LMEKN+   F++ V         
Sbjct: 121 EGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVS-------E 173
Query: 195 EENNVRISEEDLDSPFA----EFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250
            + N R + ++LD P+     E      L       + +A+A+   D  + +    T   
Sbjct: 174 WDANKRNTWDNLD-PYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLT--- 229
Query: 251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN 310
           + R+ LY  SI  F  +    IYP+YG G +P+ F R  A+ G  ++L   V+  + D +
Sbjct: 230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD 287
Query: 311 SGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGIC 370
           +    G++ + G+     K++ DPS+ +          L+   +        G+V R IC
Sbjct: 288 N-KVCGIKSSDGEIAYCDKVICDPSYVM---------HLKNKIKKI------GQVIRCIC 331
Query: 371 I 371
           I
Sbjct: 332 I 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	407
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	3e-73
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	6e-68
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	3e-61
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	2e-15
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	4e-61
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  235 bits (599), Expect = 3e-73
 Identities = 82/372 (22%), Positives = 159/372 (42%), Gaps = 46/372 (12%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
            T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +   
Sbjct: 9   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 68

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L       ++++ +  + Y++F
Sbjct: 69  KEERESKFG---------------KDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDF 112

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    +
Sbjct: 113 KQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGL 171

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            + +        E   K  L +  K  + +A+A+   D  + +     R    R+ LY  
Sbjct: 172 DLDKN----TMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQ 224

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+ 
Sbjct: 225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK- 281

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP- 378
                  +  ++ DP++  P    S+ Q                +V R ICI    +   
Sbjct: 282 TKLGTFKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPVPNT 324

Query: 379 -DLSNFLVIFPP 389
            +  +  +I P 
Sbjct: 325 SNADSLQIIIPQ 336

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  222 bits (565), Expect = 6e-68
 Identities = 82/386 (21%), Positives = 158/386 (40%), Gaps = 55/386 (14%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
                +   +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL++ +L +  
Sbjct: 12  ENLYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTF 71

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGA 133
                  S                        R++N+D+  P+ +    + V ++ K+  
Sbjct: 72  KPKENIPSKYG-------------------ENRHWNVDL-IPKFILVGGNLVKILKKTRV 111

Query: 134 SHYLEFKSIDATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV 185
           ++YLE+  ++ +++        L ++  +  VP +         L LMEKN+   F++ V
Sbjct: 112 TNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYV 171

Query: 186 QGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVL 245
               +   +  +N+    +       E      L       + +A+A+   D  + +   
Sbjct: 172 SEWDANKRNTWDNL----DPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQ--- 224

Query: 246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL 305
                + R+ LY  SI  F       IYP+YG G +P+ F R  A+ G  ++L   V+  
Sbjct: 225 PAYLTLERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDF 282

Query: 306 LTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKV 365
           + D +     G++ + G+     K++ DPS+ +                  +     G+V
Sbjct: 283 VFDDD-NKVCGIKSSDGEIAYCDKVICDPSYVMHLK---------------NKIKKIGQV 326

Query: 366 ARGICITRSSLKP--DLSNFLVIFPP 389
            R ICI  + +      ++  +I P 
Sbjct: 327 IRCICILSNPIPETNQTNSCQIIIPQ 352

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  208 bits (529), Expect = 3e-61
 Identities = 86/378 (22%), Positives = 145/378 (38%), Gaps = 45/378 (11%)

Query: 31  GLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSD 90
            +P          S   V   +      +  +  S  + +  +      +        + 
Sbjct: 155 EIPAEQSQCPGPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITY 214

Query: 91  VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
            +I            R FN+D+   ++L+     +DL++KS  S Y EFK+I        
Sbjct: 215 SQIIK--------EGRRFNIDLV-SKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFR- 264

Query: 151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF 210
           +  +  VP SRA +F  K L ++EK  LM+F      +    +              + F
Sbjct: 265 EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYR-------AYEGTTF 317

Query: 211 AEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGA 270
           +E+L   KL   ++  VL++IAM             T DG+     +   +GR+ N    
Sbjct: 318 SEYLKTQKLTPNLQYFVLHSIAMTSETTS------CTVDGLKATKKFLQCLGRYGNT--P 369

Query: 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330
            ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   
Sbjct: 370 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHF 429

Query: 331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP---DLSNFLVIF 387
           +++ S+    + +                    +++R + IT  S+     D    ++  
Sbjct: 430 IIEDSYLSENTCSRV---------------QYRQISRAVLITDGSVLRTDADQQVSILTV 474

Query: 388 PPRC--KIDSWYFCLCYA 403
           P             LC +
Sbjct: 475 PAEEPGSFAVRVIELCSS 492

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score = 77.3 bits (189), Expect = 2e-15
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 6   PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65

Query: 80  SSVCPD---------------PLYS------DVEISNYASRLLSQHPRNFNLDVSGPRVL 118
           + V  +               PL S       VE+  YAS+ L +              +
Sbjct: 66  NDVVTENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASV 125

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
             A  A        +      + +      +  A+    P   ++   + +    +K   
Sbjct: 126 TSAQSAEAAEAAETSCLPTAVEPLSMG-SCEIPAEQSQCPGPESSPEVNDAEATGKKEN- 183

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP 220
                      S  E    NV   +++ ++P    +T  ++ 
Sbjct: 184 -------SDAKSSTEEPSENVPKVQDNTETPKKNRITYSQII 218

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  202 bits (515), Expect = 4e-61
 Identities = 92/372 (24%), Positives = 161/372 (43%), Gaps = 52/372 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
              +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +        
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L      V ++L +  + YL+F
Sbjct: 64  PPETM------------------GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDF 104

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K ++ +F+     K+  VP +         +G+ EK +  +F   V      D       
Sbjct: 105 KVVEGSFVY-KGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF--- 160

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
               +  ++   +   K  L   +     +A+A+   D  + +      + INR+ LY+ 
Sbjct: 161 -EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ---PCLETINRIKLYSE 216

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ 
Sbjct: 217 SLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK- 271

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-- 377
           + G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K  
Sbjct: 272 SEGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNT 313

Query: 378 PDLSNFLVIFPP 389
            D ++  +I P 
Sbjct: 314 NDANSCQIIIPQ 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 58/457 (12%), Positives = 126/457 (27%), Gaps = 154/457 (33%)

Query: 2   TGNESESELPVP---PYPPIEPTAFDL-----IVI----GTGLPESVISAAASASGKSVL 49
             N+  ++  V    PY  +     +L     ++I    G+G  ++ ++     S K   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVALDVCLSYKVQC 178

Query: 50  HLDPNPFY---GSHFSSLSI----ADLTHFL--NSHSTPSSVCPDPLYSDVEISNYASRL 100
            +D   F+    +  S  ++      L + +  N  S         L     I     RL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRL 237

Query: 101 LSQHPRNFNL----DVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS 156
           L   P    L    +V   +      +A +L  K                +         
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAW----NAFNLSCK--------------ILLTTRFK---Q 276

Query: 157 VPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFL-- 214
           V D  +A                        H+SLD        ++ +++ S   ++L  
Sbjct: 277 VTDFLSA--------------------ATTTHISLDHHSMT---LTPDEVKSLLLKYLDC 313

Query: 215 TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY--------NSSIGRFQN 266
               LP ++ +     +++      ++E +   RDG+     +         + I    N
Sbjct: 314 RPQDLPREVLTTNPRRLSI------IAESI---RDGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 267 ALG---------AL-IYP----IYGQ------GELPQAFCRRAAVKGCLYVLRMPVISLL 306
            L           L ++P    I          ++ ++       K   Y       SL+
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-------SLV 417

Query: 307 T-DQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKV 365
                  +     +          + L+    +     + H+ + + +      D+    
Sbjct: 418 EKQPKESTI---SI--------PSIYLELKVKLEN-EYALHRSIVDHYNIPKTFDSDDL- 464

Query: 366 ARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCY 402
                     + P L  +            +Y  + +
Sbjct: 465 ----------IPPYLDQY------------FYSHIGH 479

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 52/374 (13%), Positives = 102/374 (27%), Gaps = 104/374 (27%)

Query: 51  LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI-SNY-ASR--------- 99
           L  N  Y    S +        + +         D LY+D ++ + Y  SR         
Sbjct: 87  LRIN--YKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 100 -LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVP 158
            LL   P   N+ + G             +L SG       K+  A  +  +    C + 
Sbjct: 143 ALLELRP-AKNVLIDG-------------VLGSG-------KTWVALDVCLSYKVQCKMD 181

Query: 159 DSRAAIF------KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE 212
                IF       +    ++E  Q +  +++     S  +   N +++    + +    
Sbjct: 182 F---KIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSN-IKLRIHSIQAELRR 236

Query: 213 FLTKMKLPHKIKSIVLYAIAMAD--YDQEVSEY-------VLKTRDGINRLALYNSSIGR 263
            L      + +  +VL          + +           +L TR            +  
Sbjct: 237 LLKSKPYENCL--LVL------LNVQNAKAWNAFNLSCKILLTTRF---------KQV-- 277

Query: 264 FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ 323
             + L A                        L  L      L                 +
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------PRE 321

Query: 324 DILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--S 381
            + ++   L         +A S +    ++  +   +   K+   I  + + L+P     
Sbjct: 322 VLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRK 373

Query: 382 NF--LVIFPPRCKI 393
            F  L +FPP   I
Sbjct: 374 MFDRLSVFPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	407
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.96
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.96
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.95
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.95
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.94
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.94
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.93
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.93
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.93
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.93
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.92
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.91
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.91
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.9
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.88
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.86
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.86
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.83
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.81
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.8
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.8
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.8
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.77
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.76
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.74
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.74
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.72
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.44
3dme_A	369	Conserved exported protein; structural genomics, P	99.32
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.3
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.24
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.23
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.22
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.2
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.15
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.15
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.14
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.13
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.13
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.13
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.12
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.09
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.0
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.98
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.95
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.77
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.74
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.73
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.67
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.66
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.64
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.64
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.63
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.62
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.61
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.6
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.6
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.58
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.58
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.58
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.57
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.56
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.55
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.54
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.54
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.53
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.53
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.52
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.52
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.5
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.5
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.49
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.49
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.49
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.48
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.48
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.48
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.48
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.47
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.46
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.46
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.46
4dna_A	463	Probable glutathione reductase; structural genomic	98.46
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.45
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.45
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.44
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.44
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.43
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.43
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.41
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.41
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.4
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.39
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.39
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.39
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.38
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.37
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.37
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.37
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.36
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.36
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.36
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.36
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.36
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.35
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.34
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.34
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.34
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.34
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.34
3atr_A	453	Conserved archaeal protein; saturating double bond	98.34
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.34
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.33
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.33
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.33
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.33
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.33
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.33
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.33
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.32
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.32
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.32
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.32
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.32
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.32
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.32
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.31
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.31
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.3
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.3
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.29
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.29
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.28
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.28
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.27
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.26
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.26
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.25
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.25
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.25
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.25
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.24
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.23
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.23
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.22
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.21
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.21
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.21
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.21
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.21
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.2
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.2
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.19
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.19
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.19
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.18
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.18
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.17
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.16
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.16
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.15
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.15
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.15
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.15
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.14
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.13
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.13
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.09
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.08
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.07
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.05
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.04
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.04
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.04
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.04
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.04
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.02
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.99
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.98
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.98
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.96
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.94
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.93
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.89
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.88
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.87
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.86
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.86
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.86
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.84
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.84
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.82
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.82
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.78
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.78
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.78
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.74
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.7
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.69
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.67
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.65
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.47
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.44
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.39
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.34
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.29
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.24
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.37
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.37
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.18
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.17
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.13
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.07
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.95
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.93
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.88
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.88
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.84
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.82
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	95.82
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.82
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.78
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.76
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.75
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.62
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.58
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.57
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.36
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.36
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.35
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.26
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.25
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.17
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.16
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.14
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.11
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.11
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.08
1ojt_A	482	Surface protein; redox-active center, glycolysis,	95.06
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.05
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.03
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.02
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	94.97
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.87
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.86
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.85
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.79
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.78
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.74
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.73
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.7
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.7
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.65
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.64
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	94.61
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.58
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.57
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.55
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.55
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	94.54
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.53
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.53
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.52
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.48
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	94.47
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.44
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.43
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.43
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.43
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.42
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.41
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.39
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.38
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.37
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.33
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.33
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	94.32
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	94.25
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.24
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.21
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.18
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.18
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.16
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.08
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	94.04
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	94.03
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.03
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.01
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	94.01
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.99
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.96
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	93.96
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.96
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.94
2cul_A	232	Glucose-inhibited division protein A-related PROT	93.9
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	93.87
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.84
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	93.79
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.79
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.78
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.73
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	93.7
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.67
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.66
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.65
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.55
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	93.5
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.49
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.47
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.44
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.43
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.42
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.37
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.37
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.37
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.34
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	93.32
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.32
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.29
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.29
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	93.26
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.19
3atr_A	453	Conserved archaeal protein; saturating double bond	93.19
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.14
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.13
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.03
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	93.03
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.01
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	92.96
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.95
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	92.91
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.89
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.87
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	92.85
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	92.85
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	92.83
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.81
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.77
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	92.76
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	92.76
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.76
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.74
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.73
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.73
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.69
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	92.67
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.66
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	92.64
1fec_A	490	Trypanothione reductase; redox-active center, oxid	92.61
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.61
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.59
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.54
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	92.53
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.45
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.43
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.35
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.35
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	92.34
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.31
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.23
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	92.23
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	92.22
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.22
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	92.22
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.18
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.16
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.08
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.07
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	92.05
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.0
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.97
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.96
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	91.96
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.95
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	91.95
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	91.93
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	91.93
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	91.81
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	91.8
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	91.74
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	91.7
4dna_A	463	Probable glutathione reductase; structural genomic	91.68
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	91.65
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.63
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	91.62
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	91.61
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	91.58
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	91.43
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.38
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	91.38
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.38
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	91.36
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.29
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	91.27
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.22
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.21
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	91.18
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	91.17
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.09
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.04
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.9
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	90.9
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	90.89
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	90.86
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.86
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.85
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	90.81
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.76
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	90.76
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	90.74
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	90.73
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	90.72
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.72
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.59
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	90.58
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	90.56
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	90.45
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.44
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.43
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.42
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.4
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.31
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	90.3
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.26
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	90.23
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	90.15
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	90.08
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	90.07
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	90.07
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	90.04
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	89.98
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	89.97
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	89.97
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	89.92
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	89.92
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	89.86
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	89.84
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.83
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	89.79
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	89.76
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	89.74
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.71
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	89.7
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.69
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	89.65
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	89.62
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	89.61
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	89.51
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	89.5
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	89.49
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.49
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	89.4
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	89.37
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.35
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.29
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.28
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	89.22
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	89.19
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	89.13
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	88.98
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	88.9
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	88.76
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	88.75
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	88.73
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	88.64
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	88.63
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.61
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	88.42
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	88.36
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	88.33
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	88.3
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	88.24
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.22
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	88.21
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	88.21
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	88.19
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	88.17
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	88.08
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	88.05
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	87.99
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.96
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	87.86
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	87.63
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	87.5
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	87.48
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	87.48
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	87.47
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	87.46
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	87.34
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	87.23
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	87.12
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.08

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.5e-46  Score=370.32  Aligned_cols=341  Identities=24%  Similarity=0.461  Sum_probs=271.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      ++++|||||||||++|+++|+.|+++|++|+|||+++++||++.+++..++..+.. .+.+.                 .
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~-~g~~~-----------------~   78 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFK-PKENI-----------------P   78 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHC-TTSCC-----------------C
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcc-cCCCc-----------------c
Confidence            35679999999999999999999999999999999999999999999876544443 22211                 0


Q ss_pred             ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEc--------cCCceeecCCCHHHHhhhccC
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD--------ADAKLCSVPDSRAAIFKDKSL  170 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~--------~~g~~~~~p~~~~~~~~~~~l  170 (407)
                      ..+ ...|.|++|+. |+++++.+.++++|.++|+.+|++|+.++..|++.        ++|+++++|+++.++|+++.+
T Consensus        79 ~~~-g~~R~y~iDL~-P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lL  156 (475)
T 3p1w_A           79 SKY-GENRHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLL  156 (475)
T ss_dssp             GGG-CCGGGCCEESS-CCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTS
T ss_pred             ccc-ccccceEEeec-CeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCC
Confidence            122 35689999995 99999999999999999999999999999988764        256799999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhH
Q 015413          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (407)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (407)
                      ++.+|+++++|+..+.++....+....    ..+..+.|+.+|++++++++.+++++.+++++... .+.  ...++..+
T Consensus       157 s~~eK~~l~kFL~~l~~~~~~~~~~~~----~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~-~~~--~~~~a~~~  229 (475)
T 3p1w_A          157 SLMEKNRCKNFYQYVSEWDANKRNTWD----NLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLN-DDY--LKQPAYLT  229 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTCGGGST----TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS-SGG--GGSBHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhccchhhh----cccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCc--ccCCHHHH
Confidence            999999999999988776432211000    11234689999999999999999988777666432 121  12467778


Q ss_pred             HHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 015413          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (407)
Q Consensus       251 l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~V  330 (407)
                      +.++..|+.|+++|+.  +++.||+||+++|+++|++.+++.|++|+++++|++|..+ +++++++|++.+|++++||+|
T Consensus       230 l~ri~~y~~Sl~~yg~--s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d-~~g~v~gV~~~~G~~i~Ad~V  306 (475)
T 3p1w_A          230 LERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFD-DDNKVCGIKSSDGEIAYCDKV  306 (475)
T ss_dssp             HHHHHHHHHHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCC--CceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEe-cCCeEEEEEECCCcEEECCEE
Confidence            8888999988888874  3589999999999999999999999999999999999984 278889999989999999999


Q ss_pred             EECCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC--CCCcEEEEeCCCC---CCceEEEEeeccC
Q 015413          331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRC---KIDSWYFCLCYAE  404 (407)
Q Consensus       331 I~~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~--~~~~~~~~~p~~~---~~~~~~~~~~~~~  404 (407)
                      |+++++..         ++|...      ...+.++|++||.++|+..  +.++++|+||+.+   .++.|..+++++|
T Consensus       307 I~a~~~~~---------~~p~~~------~~~~~v~R~i~I~~~pi~~~~~~~~~~i~~P~~~~~~~~~iy~~~~s~~~  370 (475)
T 3p1w_A          307 ICDPSYVM---------HLKNKI------KKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQH  370 (475)
T ss_dssp             EECGGGCT---------TSTTSE------EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGGTSSSCEEEEEEEGGG
T ss_pred             EECCCccc---------cCcccc------cccceEEEEEEEEeccCcccCCCceEEEEeCCcccCCCCCEEEEEECCCc
Confidence            99887651         122110      1257899999999999975  4567899999965   4578877777665

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=1e-44  Score=369.30  Aligned_cols=351  Identities=32%  Similarity=0.536  Sum_probs=270.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCC------------------
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV------------------   82 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~------------------   82 (407)
                      .+|||+|||+||.|.+.|+.|++.|++|+|+|+|++|||.+.++.+.++..|+...+.....                  
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEAI   86 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEEE
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchhhc
Confidence            36999999999999999999999999999999999999999999999988887655421000                  


Q ss_pred             ---CCCCcccccccccc---------------------------------------------------------------
Q 015413           83 ---CPDPLYSDVEISNY---------------------------------------------------------------   96 (407)
Q Consensus        83 ---~~~~~~~~~~~~~~---------------------------------------------------------------   96 (407)
                         .....+++.++.++                                                               
T Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (650)
T 1vg0_A           87 PLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPGP  166 (650)
T ss_dssp             EBCSSCCCEEEEEEEECSCC------------------------------------------------------------
T ss_pred             cccccccccccceeEeecccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               00000000000000                                                               


Q ss_pred             ---------------------------------------cc--c-----cccCCCCceEEecCCCeEEeeCcHHHHHHHh
Q 015413           97 ---------------------------------------AS--R-----LLSQHPRNFNLDVSGPRVLFCADHAVDLMLK  130 (407)
Q Consensus        97 ---------------------------------------~~--~-----~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~  130 (407)
                                                             ..  .     .+.+..|+|+||+ ||+++++++.++++|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL-~PklL~~~g~lv~LL~~  245 (650)
T 1vg0_A          167 ESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDL-VSKLLYSRGLLIDLLIK  245 (650)
T ss_dssp             --------------------------------------------CCCHHHHHHTGGGCCEES-SCCCEESSSHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEee-CCeeeeCCcHHHHHHHH
Confidence                                                   00  0     0113579999999 59999999999999999


Q ss_pred             cCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcH
Q 015413          131 SGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF  210 (407)
Q Consensus       131 ~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  210 (407)
                      +|+.+|++|+.++..|++. +|+++++|+++.++|+++.+++.+|+++++|+..+.++.. .+      .....+..+|+
T Consensus       246 sgV~~yLEFk~v~~~y~~~-~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p------~~~~~~d~~S~  317 (650)
T 1vg0_A          246 SNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HP------DEYRAYEGTTF  317 (650)
T ss_dssp             HTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CH------HHHHTTTTSBH
T ss_pred             cCCcceeeEEEccceEEec-CCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-Ch------HHHhhhccCCH
Confidence            9999999999999988875 8889999999999999999999999999999998877532 11      11234567999


Q ss_pred             HHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHH
Q 015413          211 AEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA  290 (407)
Q Consensus       211 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~  290 (407)
                      .+||+++++++.+++++.+.+++.+...      .++..++.++..|+.++++|+.  ++++||+||+++|+++|+|+++
T Consensus       318 ~d~L~~~~ls~~L~~~L~~~lal~~~~~------~pa~~~l~~i~~~l~sl~~yg~--sg~~yp~GG~g~L~qaL~r~~~  389 (650)
T 1vg0_A          318 SEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGN--TPFLFPLYGQGELPQCFCRMCA  389 (650)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSS--SSEEEETTCTTHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhccCCCC------CchhHHHHHHHHHHHHHHhhcc--CceEEeCCchhHHHHHHHHHHH
Confidence            9999999999999998887665543221      2345556667788888888875  3589999999999999999999


Q ss_pred             hcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEE
Q 015413          291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGIC  370 (407)
Q Consensus       291 ~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~  370 (407)
                      +.||+|+||++|++|.++.++|++++|++.+|++++||+||++|.++.....               ++..++.++|++|
T Consensus       390 ~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~~~~---------------~~~~~~~v~R~i~  454 (650)
T 1vg0_A          390 VFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC---------------SRVQYRQISRAVL  454 (650)
T ss_dssp             HTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTTT---------------TTCCCEEEEEEEE
T ss_pred             HcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCHhHh---------------ccccccceEEEEE
Confidence            9999999999999999972118899998888999999999998876522210               1224688999999


Q ss_pred             EeCCCCCCCC---CcEEEEeCCCC--CCceEEEEeecc
Q 015413          371 ITRSSLKPDL---SNFLVIFPPRC--KIDSWYFCLCYA  403 (407)
Q Consensus       371 i~~~p~~~~~---~~~~~~~p~~~--~~~~~~~~~~~~  403 (407)
                      |+++|+.+..   ..++++||+.+  ..+.+..+.+.+
T Consensus       455 i~~~pi~~~~~~~~~~~iiiP~~~g~~~~V~i~~~Ss~  492 (650)
T 1vg0_A          455 ITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSS  492 (650)
T ss_dssp             EESSCSSCCSCCCCCEEEEECCSSTTSCCEEEEEECGG
T ss_pred             EecCCCCCcCCCcceEEEEccCccCCCCCEEEEEeCCC
Confidence            9999997543   44888999875  345555555443

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=1.6e-35  Score=295.83  Aligned_cols=324  Identities=26%  Similarity=0.516  Sum_probs=238.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      +.++||||||||++||+||++|+++|++|+||||++++||+++|++.+|...+. +.+...         ..+.    ..
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~-d~~~~~---------~~~~----~~   74 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKF-KQNPIS---------KEER----ES   74 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHH-CSSCCC---------HHHH----HH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhcee-ccCCcc---------ccCc----ch
Confidence            356999999999999999999999999999999999999999999987621211 111000         0000    00


Q ss_pred             cccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (407)
                      .+ .....|.+|+ +|++++..+.+.++|.++|+.+|++|...+..|.+. +|+.+++|.+..+.+....++..+++.++
T Consensus        75 ~~-~~g~~~~~~l-~P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~~  151 (453)
T 2bcg_G           75 KF-GKDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMK  151 (453)
T ss_dssp             HH-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHHH
T ss_pred             hc-ccccceeecc-ccceeecCcHHHHHHHhcCCccceEEEEccceeEEe-CCeEEECCCChHHHHhhhccchhhHHHHH
Confidence            01 1235677899 499999999999999999999999999988878765 88999999986677877777888999999


Q ss_pred             HHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhcc---CCcchhhhhhchhhHHHHHHH
Q 015413          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD---YDQEVSEYVLKTRDGINRLAL  256 (407)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~l~~~~~  256 (407)
                      +|++.+.++....+..  . . ..+....|+.+|+++++.++.+++++.+.+.+..   +...      ++...+.++..
T Consensus       152 ~~~~~~~~~~~~~p~~--~-~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~------p~~~~~~~~~~  221 (453)
T 2bcg_G          152 KFLEWISSYKEDDLST--H-Q-GLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ------PARPSFERILL  221 (453)
T ss_dssp             HHHHHHHHCBTTBGGG--S-T-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGS------BHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCchh--h-h-ccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCC------chHHHHHHHHH
Confidence            9998877654321110  0 0 0124578999999999999999998766544321   1111      23344555566


Q ss_pred             HHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 015413          257 YNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (407)
Q Consensus       257 ~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~  336 (407)
                      |..+++.++.  +++.||+||+++|+++|++.+++.|++|+++++|++|..+.+++++++|++ +|++++||+||+++..
T Consensus       222 ~~~s~~~~~~--~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~  298 (453)
T 2bcg_G          222 YCQSVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTY  298 (453)
T ss_dssp             HHHHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGG
T ss_pred             HHHHHHhhcC--CceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCc
Confidence            7777666653  347799999999999999999999999999999999987511467778886 6888999999976543


Q ss_pred             CCCCCCccchhhhhhhhhhhcccCCCc-eEEEEEEEeCCCCCC--CCCcEEEEeCCCC
Q 015413          337 TVPGSLASSHQQLQESFQAFSLSDNKG-KVARGICITRSSLKP--DLSNFLVIFPPRC  391 (407)
Q Consensus       337 ~~~~~~~~~~p~lp~~~~~~~~~~~~g-~~~k~i~i~~~p~~~--~~~~~~~~~p~~~  391 (407)
                      ...+               +   ..++ ...++++++++|+..  ...+..++||...
T Consensus       299 ~~~~---------------l---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ii~~~~~  338 (453)
T 2bcg_G          299 FPEK---------------C---KSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQ  338 (453)
T ss_dssp             CGGG---------------E---EEEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGG
T ss_pred             cchh---------------h---cccCCcceeEEEEEccccCCCCCCccEEEEeCccc
Confidence            3111               1   1134 688999999998863  3456788888654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=6.8e-34  Score=282.38  Aligned_cols=321  Identities=28%  Similarity=0.536  Sum_probs=236.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccc-hhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      +.++||||||||++||+||+.|+++|++|+|+|+++++||+++|++ +..... .++.+...       +          
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~-~~~~~~~~-------~----------   65 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYK-RFQLLEGP-------P----------   65 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHH-HTTCTTCC-------C----------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHh-hccCCCCC-------h----------
Confidence            3569999999999999999999999999999999999999999998 432110 11110000       0          


Q ss_pred             ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                      ..+ .....|.+|+ ||++++..+.+.++|.++|+.+|++|...+..|++. +|+.+.+|.+..+.+.....+..+++.+
T Consensus        66 ~~~-~~g~~~~~d~-gP~~l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~  142 (433)
T 1d5t_A           66 ETM-GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYK-GGKIYKVPSTETEALASNLMGMFEKRRF  142 (433)
T ss_dssp             GGG-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGGCCEEECCEEEEEE-TTEEEECCCSHHHHHHCSSSCHHHHHHH
T ss_pred             hHh-cccCceEEcc-CcceeeccchHHHHHHHcCCccceEEEEeCceEEee-CCEEEECCCCHHHHhhCcccChhhHHHH
Confidence            001 1235688999 599998888999999999999999999988877765 8899999998767777777777789999


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (407)
                      ++|++.+.++....+...   + ..++.++|+.+|+++++.++.+++++.+.+++.. ..++  .+.++..++..+..|.
T Consensus       143 ~~~~~~~~~~~~~~p~~~---~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~-~~~~--~~~p~~~~~~~~~~~~  215 (433)
T 1d5t_A          143 RKFLVFVANFDENDPKTF---E-GVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYR-TDDY--LDQPCLETINRIKLYS  215 (433)
T ss_dssp             HHHHHHHHHCCTTCGGGG---T-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCS-SSGG--GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCchhc---c-ccccccCCHHHHHHHcCCCHHHHHHHHHHHHhcc-CCCc--cCCCHHHHHHHHHHHH
Confidence            999988776543222110   1 1134678999999999999999998765533321 1121  1234555566666777


Q ss_pred             HhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 015413          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (407)
Q Consensus       259 ~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (407)
                      .++++++.  +++++|+||+++|+++|++.+++.|++|+++++|++|..+  ++++++|+ .+|++++||+||++.....
T Consensus       216 ~s~~~~g~--~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~--~~~v~~v~-~~g~~~~ad~VV~a~~~~~  290 (433)
T 1d5t_A          216 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEGEVARCKQLICDPSYVP  290 (433)
T ss_dssp             HSCCSSSC--CSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEE--TTEEEEEE-ETTEEEECSEEEECGGGCG
T ss_pred             HHHHhcCC--CcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEe--CCEEEEEE-ECCeEEECCEEEECCCCCc
Confidence            76666653  4588999999999999999999999999999999999987  77877787 5888999999997543321


Q ss_pred             CCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC--CCcEEEEeCCCC
Q 015413          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRC  391 (407)
Q Consensus       339 ~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~--~~~~~~~~p~~~  391 (407)
                      ..        +    ..      .....+++++.++|+...  ..+..|+||.+.
T Consensus       291 ~~--------~----~~------~~~~~~~~~il~~~~~~~~~~~~~~i~~~~~~  327 (433)
T 1d5t_A          291 DR--------V----RK------AGQVIRIICILSHPIKNTNDANSCQIIIPQNQ  327 (433)
T ss_dssp             GG--------E----EE------EEEEEEEEEEESSCCTTSTTCSSEEEEECGGG
T ss_pred             cc--------c----cc------cCcceeEEEEEcCcccccCCCceEEEEeCccc
Confidence            11        0    01      124667888899987632  357788888654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=6.5e-32  Score=273.04  Aligned_cols=296  Identities=14%  Similarity=0.137  Sum_probs=181.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (407)
                      .+|||||||++||+||++|+++|++|+||||++++||+++|++.+|                                  
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G----------------------------------   47 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQG----------------------------------   47 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETT----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCC----------------------------------
Confidence            5799999999999999999999999999999999999999986543                                  


Q ss_pred             CCCCceEEecCCCeEEeeCcHHHHHHHhcC--cccccccccccceee-EccCCceeecCCCHHHHhhh-ccCChHHHHHH
Q 015413          103 QHPRNFNLDVSGPRVLFCADHAVDLMLKSG--ASHYLEFKSIDATFM-LDADAKLCSVPDSRAAIFKD-KSLGLMEKNQL  178 (407)
Q Consensus       103 ~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g--~~~~~~f~~~~~~~~-~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l  178 (407)
                           |.+|. |++++...+.+.+++...|  +.+++++.+.+..|. ...+|+.+.++.+...+... ..+++.+...+
T Consensus        48 -----~~~D~-G~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~  121 (501)
T 4dgk_A           48 -----FTFDA-GPTVITDPSAIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGY  121 (501)
T ss_dssp             -----EEEEC-SCCCBSCTHHHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHH
T ss_pred             -----EEEec-CceeecCchhHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchh
Confidence                 45777 5887766666667777655  567888888777663 33478888888876443321 23456777788


Q ss_pred             HHHHHHHHhhcCCCcc-----c-cccc---cccccc----cCCcHHHHHHhcCCChhhHHHHHH-HHHhccCCcchhhhh
Q 015413          179 MRFFKLVQGHLSLDES-----E-ENNV---RISEED----LDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYV  244 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~-----~-~~~~---~~~~~~----~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  244 (407)
                      .+|++.++........     + ....   ......    ...++.+++.++..++.++.++.. +.....   .+  ..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~---~p--~~  196 (501)
T 4dgk_A          122 RQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGG---NP--FA  196 (501)
T ss_dssp             HHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHS---CC----
T ss_pred             hhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCC---Cc--ch
Confidence            8887766554321100     0 0000   000011    114677888888888888887653 221111   11  01


Q ss_pred             hchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE
Q 015413          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (407)
Q Consensus       245 ~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~  324 (407)
                      .++..   .+..+..  ...|     .+||+||+++|+++|++.+++.|++|++|++|++|+++  ++++++|+++||++
T Consensus       197 ~~~~~---~~~~~~~--~~~G-----~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~~g~~  264 (501)
T 4dgk_A          197 TSSIY---TLIHALE--REWG-----VWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETT--GNKIEAVHLEDGRR  264 (501)
T ss_dssp             CCCTH---HHHHHHH--SCCC-----EEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCE
T ss_pred             hhhhh---hhhhhhh--ccCC-----eEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEee--CCeEEEEEecCCcE
Confidence            12211   1222211  1222     67999999999999999999999999999999999997  88999999999999


Q ss_pred             EEcCEEEE--CCCCCCCCCCccchhhhhhh-hhhhcccCCCceEEEEEEEeCCCCC
Q 015413          325 ILSHKLVL--DPSFTVPGSLASSHQQLQES-FQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       325 i~Ad~VI~--~p~~~~~~~~~~~~p~lp~~-~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      +.||+||+  +|..++..+. +. .+++.. ...+..........++.+.++++..
T Consensus       265 ~~ad~VV~~a~~~~~~~~Ll-~~-~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~  318 (501)
T 4dgk_A          265 FLTQAVASNADVVHTYRDLL-SQ-HPAAVKQSNKLQTKRMSNSLFVLYFGLNHHHD  318 (501)
T ss_dssp             EECSCEEECCC-----------------------------CCEEEEEEEEESSCCT
T ss_pred             EEcCEEEECCCHHHHHHHhc-cc-cccchhhhhhhhccccCCceeEEEecccCCcc
Confidence            99999995  4666655543 21 223333 2333333334567777788887764

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.96  E-value=1.1e-28  Score=250.62  Aligned_cols=299  Identities=14%  Similarity=0.063  Sum_probs=197.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      .++||||||||++||+||+.|+++|++|+|||+++++||+++|++.+.                                
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~--------------------------------   50 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQK--------------------------------   50 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTT--------------------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCC--------------------------------
Confidence            458999999999999999999999999999999999999999976431                                


Q ss_pred             ccCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHH
Q 015413          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (407)
                            .+.+|+ |++++... ..+.+++.+.|+..+..+..... +.+ .+|+.+.++...    . ..+++.+...+.
T Consensus        51 ------g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~-~~~-~~g~~~~~~~~~----p-~~~~~~~~~~~~  116 (520)
T 1s3e_A           51 ------VKYVDL-GGSYVGPTQNRILRLAKELGLETYKVNEVERL-IHH-VKGKSYPFRGPF----P-PVWNPITYLDHN  116 (520)
T ss_dssp             ------TSCEES-SCCEECTTCHHHHHHHHHTTCCEEECCCSSEE-EEE-ETTEEEEECSSS----C-CCCSHHHHHHHH
T ss_pred             ------Cccccc-CceEecCCcHHHHHHHHHcCCcceecccCCce-EEE-ECCEEEEecCCC----C-CCCCHHHHHHHH
Confidence                  233677 57777543 47788888999876554432211 222 266666554320    0 012333333444


Q ss_pred             HHHHHHHhhcCCCcccccc-ccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413          180 RFFKLVQGHLSLDESEENN-VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (407)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (407)
                      +++..+.+........... .....++.+.++.+|+++...++.++.++...... .+..++  .++|+...+.    ++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~-~~g~~~--~~~s~~~~~~----~~  189 (520)
T 1s3e_A          117 NFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNL-CVTAET--HEVSALWFLW----YV  189 (520)
T ss_dssp             HHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHH-HHSSCT--TTSBHHHHHH----HH
T ss_pred             HHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhh-hcCCCh--HHhHHHHHHH----HH
Confidence            4444333322111000000 00012356789999999988888887765432111 122232  2356554332    33


Q ss_pred             Hhhccc----c-CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-
Q 015413          259 SSIGRF----Q-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-  332 (407)
Q Consensus       259 ~s~~~~----~-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-  332 (407)
                      ...+.+    . ...+...++.||+++|+++|++.   .|++|++|++|++|..+  ++++ .|++.+|++++||+||+ 
T Consensus       190 ~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~v-~v~~~~g~~~~ad~VI~a  263 (520)
T 1s3e_A          190 KQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL---LGDRVKLERPVIYIDQT--RENV-LVETLNHEMYEAKYVISA  263 (520)
T ss_dssp             HTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHH---HGGGEESSCCEEEEECS--SSSE-EEEETTSCEEEESEEEEC
T ss_pred             hhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHH---cCCcEEcCCeeEEEEEC--CCeE-EEEECCCeEEEeCEEEEC
Confidence            222110    0 01123578999999999998764   48899999999999876  5554 58888999999999995 


Q ss_pred             CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC
Q 015413          333 DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL  380 (407)
Q Consensus       333 ~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~  380 (407)
                      .|...+.++  .|+|+||+.+.+..++.+++.+.|+++.|++|||++.
T Consensus       264 ~p~~~l~~l--~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~  309 (520)
T 1s3e_A          264 IPPTLGMKI--HFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKK  309 (520)
T ss_dssp             SCGGGGGGS--EEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGGGG
T ss_pred             CCHHHHcce--eeCCCCCHHHHHHHHhCCCcceEEEEEEeCCCcccCC
Confidence            466665664  3789999988887788889999999999999998643

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.96  E-value=6.4e-28  Score=240.69  Aligned_cols=295  Identities=11%  Similarity=0.101  Sum_probs=189.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      +.++||||||||++||+||+.|+++|++|+|||+++++||++.+.+.+|                               
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g-------------------------------   51 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDG-------------------------------   51 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETT-------------------------------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCC-------------------------------
Confidence            4568999999999999999999999999999999999999999876432                               


Q ss_pred             cccCCCCceEEecCCCeEEee-CcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                              +.+|+ |++++.. ...+.+++.+.|+..+..+......+. ..+|+.+.++...      ..+++.....+
T Consensus        52 --------~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~~~~~~~------~~~~~~~~~~~  115 (453)
T 2yg5_A           52 --------AVLEI-GGQWVSPDQTALISLLDELGLKTFERYREGESVYI-SSAGERTRYTGDS------FPTNETTKKEM  115 (453)
T ss_dssp             --------EEEEC-SCCCBCTTCHHHHHHHHHTTCCEEECCCCSEEEEE-CTTSCEEEECSSS------CSCCHHHHHHH
T ss_pred             --------ceecc-CCeEecCccHHHHHHHHHcCCcccccccCCCEEEE-eCCCceeeccCCC------CCCChhhHHHH
Confidence                    23455 4555433 346778888899876655543222222 2125554443210      01222222222


Q ss_pred             HHHHHHHH----hhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhh-hhchhhHHHH
Q 015413          179 MRFFKLVQ----GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEY-VLKTRDGINR  253 (407)
Q Consensus       179 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~  253 (407)
                      .+++..+.    ......++..   .....+.+.++.+|++++..++.++.++.... ...+..++  . ++|+...+. 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~s~~~~~~-  188 (453)
T 2yg5_A          116 DRLIDEMDDLAAQIGAEEPWAH---PLARDLDTVSFKQWLINQSDDAEARDNIGLFI-AGGMLTKP--AHSFSALQAVL-  188 (453)
T ss_dssp             HHHHHHHHHHHHHHCSSCGGGS---TTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHH-CCCCCCSC--TTSSBHHHHHH-
T ss_pred             HHHHHHHHHHHhhcCCCCCCCC---cchhhhhhccHHHHHHhhcCCHHHHHHHHHHH-HhhcccCC--cccccHHHHHH-
Confidence            22222111    1111111100   00123457899999999888888887654332 12233333  2 366654333 


Q ss_pred             HHHHHHhhcccc----CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 015413          254 LALYNSSIGRFQ----NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (407)
Q Consensus       254 ~~~~~~s~~~~~----~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~  329 (407)
                         ++...+.+.    ...+...+++||+++|+++|++.   .|++|++|++|++|..+  +++.+.|++ +|++++||+
T Consensus       189 ---~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~~v~v~~-~~~~~~ad~  259 (453)
T 2yg5_A          189 ---MAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEA---LGDDVFLNAPVRTVKWN--ESGATVLAD-GDIRVEASR  259 (453)
T ss_dssp             ---HHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHH---HGGGEECSCCEEEEEEE--TTEEEEEET-TTEEEEEEE
T ss_pred             ---HhccCCcHhhhccCCCcceEEEcCChHHHHHHHHHh---cCCcEEcCCceEEEEEe--CCceEEEEE-CCeEEEcCE
Confidence               222211110    00012568999999999998764   48899999999999986  554245764 788899999


Q ss_pred             EEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          330 LVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       330 VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                      ||+ .|...+.++.  |+|+||+.+.+..++.+++.+.|+.+.|++|||+.
T Consensus       260 VI~a~p~~~~~~l~--~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~  308 (453)
T 2yg5_A          260 VILAVPPNLYSRIS--YDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRE  308 (453)
T ss_dssp             EEECSCGGGGGGSE--EESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGG
T ss_pred             EEEcCCHHHHhcCE--eCCCCCHHHHHHHhcCCCcceEEEEEEECCCCCCC
Confidence            995 4666666643  68999998777777788999999999999999854

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.95  E-value=3.5e-27  Score=238.07  Aligned_cols=296  Identities=15%  Similarity=0.101  Sum_probs=190.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (407)
                      +||||||||++||+||..|+++|++|+|||+++++||+++|++.+|                                  
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g----------------------------------   85 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDG----------------------------------   85 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETT----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCC----------------------------------
Confidence            8999999999999999999999999999999999999999976432                                  


Q ss_pred             CCCCceEEecCCCeEEee-CcHHHHHHHhcCccccccccc----ccceeeEccC--CceeecCCCHHHHhhhccCChHHH
Q 015413          103 QHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKS----IDATFMLDAD--AKLCSVPDSRAAIFKDKSLGLMEK  175 (407)
Q Consensus       103 ~~~~~~~idl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~----~~~~~~~~~~--g~~~~~p~~~~~~~~~~~l~~~~k  175 (407)
                           +.+|+ |++++.. ...+.+++.+.|+.+.+....    ....|.+. +  |+...+|..  +...      .-.
T Consensus        86 -----~~~d~-G~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~--~~~~------~~~  150 (495)
T 2vvm_A           86 -----YPYEM-GGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLR-TNPTTSTYMTHE--AEDE------LLR  150 (495)
T ss_dssp             -----EEEEC-SCCCBCTTSHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEE-SSTTCCEEECHH--HHHH------HHH
T ss_pred             -----eeecC-CCeEecCccHHHHHHHHHcCCcceeecccccCCCceEEEec-CCCCceeecCHH--HHHH------HHH
Confidence                 34677 5777653 447888888888865443332    22234333 3  455555431  1110      001


Q ss_pred             HHHHHHHH----HHHhhcCCCccccccccccccccCCcHHHHHHhcC--CChhhHHHHHHHHHhccCCcchhhhhhchhh
Q 015413          176 NQLMRFFK----LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK--LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (407)
Q Consensus       176 ~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  249 (407)
                      ..+.+|++    ..+.... .+...........+.+.|+.+||++++  .++.++.++...+... +..++  .++|+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~  226 (495)
T 2vvm_A          151 SALHKFTNVDGTNGRTVLP-FPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLC-SGGTL--ENSSFGE  226 (495)
T ss_dssp             HHHHHHHCSSSSTTTTTCS-CTTSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHH-HSSCT--TTSBHHH
T ss_pred             HHHHHHHccchhhhhhcCC-CCCCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHh-cCCCc--chhhHHH
Confidence            11122222    0111100 000000000112345789999999887  7887776654322111 11222  2356544


Q ss_pred             HHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 015413          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (407)
Q Consensus       250 ~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad  328 (407)
                      .+..+......+..+.. ....++++||+++|+++|++.+...| ++|+++++|++|..+  ++. +.|++.+|++++||
T Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad  302 (495)
T 2vvm_A          227 FLHWWAMSGYTYQGCMD-CLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE--RDA-ARVTARDGREFVAK  302 (495)
T ss_dssp             HHHHHHHTTSSHHHHHH-HHHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC--SSS-EEEEETTCCEEEEE
T ss_pred             HHHHHHHcCCCHHHHHh-hhceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcC
Confidence            33322111000000000 01256899999999999999998888 999999999999875  444 46888888899999


Q ss_pred             EEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          329 KLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       329 ~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      +||+ .|...+.++  .|+|+||+.+.+..+...++.+.|+++.|++|+|
T Consensus       303 ~vI~a~~~~~l~~i--~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~~  350 (495)
T 2vvm_A          303 RVVCTIPLNVLSTI--QFSPALSTERISAMQAGHVSMCTKVHAEVDNKDM  350 (495)
T ss_dssp             EEEECCCGGGGGGS--EEESCCCHHHHHHHHHCCCCCCEEEEEEESCGGG
T ss_pred             EEEECCCHHHHhhe--eeCCCCCHHHHHHHHhcCCCceeEEEEEECCccC
Confidence            9995 465665664  4789999987777677889999999999999986

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.95  E-value=7.6e-27  Score=234.49  Aligned_cols=287  Identities=16%  Similarity=0.194  Sum_probs=189.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      .+||||||||++||+||+.|+++|++|+|||+++++||+++|++.+|                                 
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g---------------------------------   62 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG---------------------------------   62 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT---------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCC---------------------------------
Confidence            57999999999999999999999999999999999999999986533                                 


Q ss_pred             cCCCCceEEecCCCeEEee-CcHHHHHHHhcCccccccccc--ccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413          102 SQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKS--IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~--~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                            +.+|. |++++.. ...+.+++.+.|+...+.+..  ....+++. +|+.+.+|.+..+++....++..++.++
T Consensus        63 ------~~~~~-g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~  134 (478)
T 2ivd_A           63 ------YLVEQ-GPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPPAFLASDILPLGARLRV  134 (478)
T ss_dssp             ------EEEES-SCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEE-TTEEEECCCSHHHHHTCSSSCHHHHHHH
T ss_pred             ------eeeec-ChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEE-CCEEEECCCCHHHhccCCCCCHHHHHHH
Confidence                  34677 5877755 347788899999876655432  12234443 7888888887766665445544333221


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhH-HHHHHH-HHhccCCcchhhhhhchhhHHHHHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIVLYA-IAMADYDQEVSEYVLKTRDGINRLAL  256 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~l~~~~~  256 (407)
                            +.......         .....+.++.+|+++. +.+... .++... ...  +..++  .++|+...+..+..
T Consensus       135 ------~~~~~~~~---------~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~~~~~  194 (478)
T 2ivd_A          135 ------AGELFSRR---------APEGVDESLAAFGRRH-LGHRATQVLLDAVQTGI--YAGDV--EQLSVAATFPMLVK  194 (478)
T ss_dssp             ------HGGGGCCC---------CCTTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHH--HCCCT--TTBBHHHHCHHHHH
T ss_pred             ------hhhhhcCC---------CCCCCCCCHHHHHHHh-hCHHHHHHHHHHHhcee--ecCCH--HHhhHHHHhHHHHH
Confidence                  22221110         0124568999999875 344333 333211 111  12222  23555444433332


Q ss_pred             HHHhhcc-------c----------cCCC----cceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEE
Q 015413          257 YNSSIGR-------F----------QNAL----GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (407)
Q Consensus       257 ~~~s~~~-------~----------~~~~----~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~  315 (407)
                      +....+.       .          ....    +.+++++||+++|+++|++.+   |++|+++++|++|..+  +++ +
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~--~~~-~  268 (478)
T 2ivd_A          195 MEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE--DGG-W  268 (478)
T ss_dssp             HHHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC----C-C
T ss_pred             HHHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec--CCe-E
Confidence            2111000       0          0000    237899999999999998754   7899999999999876  444 5


Q ss_pred             EEEe---CCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          316 GVRL---ASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       316 gV~~---~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                      +|++   .+|++++||+||+ .|...+.++    .|+||+.+.+..+...++.+.|+++.+++|+|+.
T Consensus       269 ~v~~~~~~~g~~~~ad~vV~a~~~~~~~~l----l~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~  332 (478)
T 2ivd_A          269 RLIIEEHGRRAELSVAQVVLAAPAHATAKL----LRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPA  332 (478)
T ss_dssp             EEEEEETTEEEEEECSEEEECSCHHHHHHH----HTTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCC
T ss_pred             EEEEeecCCCceEEcCEEEECCCHHHHHHH----hhccCHHHHHHHhcCCCCcEEEEEEEEccccCCC
Confidence            7877   6788899999995 455544443    3668877666667778999999999999998764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.94  E-value=6.4e-26  Score=227.58  Aligned_cols=297  Identities=13%  Similarity=0.095  Sum_probs=182.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      +||||||||++||+||+.|+++|+  +|+|||+++++||+++|....                                 
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~---------------------------------   49 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP---------------------------------   49 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT---------------------------------
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc---------------------------------
Confidence            699999999999999999999999  999999999999999986532                                 


Q ss_pred             ccCCCCceEEecCCCeEEeeC----cHHHHHHHhcCccccccccc-----ccceeeEccCCceeecCCCHHHHhhh-ccC
Q 015413          101 LSQHPRNFNLDVSGPRVLFCA----DHAVDLMLKSGASHYLEFKS-----IDATFMLDADAKLCSVPDSRAAIFKD-KSL  170 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~----~~~~~~l~~~g~~~~~~f~~-----~~~~~~~~~~g~~~~~p~~~~~~~~~-~~l  170 (407)
                           ..+.+|. |++.+...    ..+.+++.+.|+...+....     ....|++. +|+.+++|.+...++.. ..+
T Consensus        50 -----~g~~~d~-G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~  122 (477)
T 3nks_A           50 -----NGAIFEL-GPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYV-GGALHALPTGLRGLLRPSPPF  122 (477)
T ss_dssp             -----TSCEEES-SCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEE-TTEEEECCCSSCC---CCTTS
T ss_pred             -----CCeEEEe-CCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEE-CCEEEECCCChhhcccccchh
Confidence                 1234666 47765443    25678888888865433221     11235554 78888888754333321 111


Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhH
Q 015413          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (407)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (407)
                      ..   ..+.+   .+.....  +        .....+.++.+|+++. +.+.+.+.+...+....+..++  .++|+...
T Consensus       123 ~~---~~~~~---~~~~~~~--~--------~~~~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~~ls~~~~  183 (477)
T 3nks_A          123 SK---PLFWA---GLRELTK--P--------RGKEPDETVHSFAQRR-LGPEVASLAMDSLCRGVFAGNS--RELSIRSC  183 (477)
T ss_dssp             CS---CSSHH---HHTTTTS--C--------CCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHSSCT--TTBBHHHH
T ss_pred             hh---HHHHH---HHHhhhc--C--------CCCCCCcCHHHHHHHh-hCHHHHHHHHHHHhcccccCCH--HHhhHHHH
Confidence            11   11111   1112111  0        1123567999999863 3333333222111101122222  23666555


Q ss_pred             HHHHHHHHHhhccc----------------------cCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEe
Q 015413          251 INRLALYNSSIGRF----------------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (407)
Q Consensus       251 l~~~~~~~~s~~~~----------------------~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~  308 (407)
                      +..+..+....+..                      ......+++++||++.|+++|++.+...|++|+++++|++|..+
T Consensus       184 ~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~  263 (477)
T 3nks_A          184 FPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQ  263 (477)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEC
T ss_pred             HHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEc
Confidence            44433321111100                      00012378999999999999999999999999999999999886


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCCcEEE
Q 015413          309 QNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLV  385 (407)
Q Consensus       309 ~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~~~~  385 (407)
                        +++.+.|++ ++++++||+||+ .|...+.++.    |++++......+..+++.+.++.+.|++|+++..+..++
T Consensus       264 --~~~~~~v~~-~~~~~~ad~vv~a~p~~~~~~ll----~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~g~l  334 (477)
T 3nks_A          264 --AEGRWKVSL-RDSSLEADHVISAIPASVLSELL----PAEAAPLARALSAITAVSVAVVNLQYQGAHLPVQGFGHL  334 (477)
T ss_dssp             --GGGCEEEEC-SSCEEEESEEEECSCHHHHHHHS----CGGGHHHHHHHHTCCEEEEEEEEEEETTCCCSSCSSEEE
T ss_pred             --CCceEEEEE-CCeEEEcCEEEECCCHHHHHHhc----cccCHHHHHHHhcCCCCcEEEEEEEECCCCCCCCCceEE
Confidence              444357764 666899999995 4665545442    222333333335567899999999999999865555444

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.94  E-value=5e-25  Score=217.80  Aligned_cols=277  Identities=13%  Similarity=0.073  Sum_probs=175.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (407)
                      +||||||||++||+||+.|+++|++|+||||++++||++.++..+|                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G----------------------------------   46 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKG----------------------------------   46 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCC----------------------------------
Confidence            5899999999999999999999999999999999999999976544                                  


Q ss_pred             CCCCceEEecCCCeEEee---CcHHHHHHHhcCcccccccccccceeeEc-cC--------CceeecCCCHHHHhhhccC
Q 015413          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLD-AD--------AKLCSVPDSRAAIFKDKSL  170 (407)
Q Consensus       103 ~~~~~~~idl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~~~~-~~--------g~~~~~p~~~~~~~~~~~l  170 (407)
                           |.+|. ||+.+..   ...+.+++.+.|....+.... .....+. .+        ++.+.++.    .  ...+
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~  113 (425)
T 3ka7_A           47 -----FQLSS-GAFHMLPNGPGGPLACFLKEVEASVNIVRSE-MTTVRVPLKKGNPDYVKGFKDISFND----F--PSLL  113 (425)
T ss_dssp             -----EEEES-SSCSCBTTGGGSHHHHHHHHTTCCCCEEECC-CCEEEEESSTTCCSSTTCEEEEEGGG----G--GGGS
T ss_pred             -----cEEcC-CCceEecCCCccHHHHHHHHhCCCceEEecC-CceEEeecCCCcccccccccceehhh----h--hhhC
Confidence                 33444 3443321   125667777777654322221 1111111 01        33333321    1  1245


Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHH-HhccCCcchhhhhhchhh
Q 015413          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRD  249 (407)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~  249 (407)
                      ++.++..+...+..+..               ....+.++.+|++++..++.++.++.... ...  ..++  .++|+..
T Consensus       114 ~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~s~~~  174 (425)
T 3ka7_A          114 SYKDRMKIALLIVSTRK---------------NRPSGSSLQAWIKSQVSDEWLIKFADSFCGWAL--SLKS--DEVPVEE  174 (425)
T ss_dssp             CHHHHHHHHHHHHHTTT---------------SCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHH--SSCG--GGSBHHH
T ss_pred             CHHHHHHHHHHHHhhhh---------------cCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHh--CCCc--ccchHHH
Confidence            56666655443322110               01245789999998766666666543211 111  1222  2356544


Q ss_pred             HHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 015413          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (407)
Q Consensus       250 ~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~  329 (407)
                      .+..+..+    ..++    ...+++||++.|+++|++.+++.|++|+++++|++|..+  ++++++|++ +|++++||+
T Consensus       175 ~~~~~~~~----~~~~----~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~-~g~~~~ad~  243 (425)
T 3ka7_A          175 VFEIIENM----YRFG----GTGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIE--NGKAAGIIA-DDRIHDADL  243 (425)
T ss_dssp             HHHHHHHH----HHHC----SCEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEE-TTEEEECSE
T ss_pred             HHHHHHHH----HhcC----CccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEE--CCEEEEEEE-CCEEEECCE
Confidence            44433322    1222    156899999999999999999999999999999999987  778878886 588899999


Q ss_pred             EEE-CCCCCCCCCCccchhhh--hhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          330 LVL-DPSFTVPGSLASSHQQL--QESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       330 VI~-~p~~~~~~~~~~~~p~l--p~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      ||+ .|...+.++. +..+.+  |+.+....++..+..+.++.+.+++++.
T Consensus       244 VV~a~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~  293 (425)
T 3ka7_A          244 VISNLGHAATAVLC-SEALSKEADAAYFKMVGTLQPSAGIKICLAADEPLV  293 (425)
T ss_dssp             EEECSCHHHHHHHT-TTTCCTTTTHHHHHHHHHCCCBEEEEEEEEESSCSS
T ss_pred             EEECCCHHHHHHhc-CCcccccCCHHHHHHhhCcCCCceEEEEeecCCCcc
Confidence            995 3444333432 112222  4443333345557778899999999865

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.93  E-value=3.3e-25  Score=222.45  Aligned_cols=289  Identities=16%  Similarity=0.189  Sum_probs=183.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (407)
                      |.++||||||||++||+||+.|+++|  ++|+|||+++++||++.|....|                             
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g-----------------------------   52 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDG-----------------------------   52 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTT-----------------------------
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCC-----------------------------
Confidence            44689999999999999999999999  99999999999999999876533                             


Q ss_pred             cccccCCCCceEEecCCCeEEee-CcHHHHHHHhcCcccccccccccceeeEccCCceeecCCC--------HHHHhhhc
Q 015413           98 SRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKDK  168 (407)
Q Consensus        98 ~~~~~~~~~~~~idl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~~  168 (407)
                                +.+|. |++++.. ...+.+++.+.|+...+........+++. +|+...+|.+        ...++...
T Consensus        53 ----------~~~~~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~p~~~~~~~~~~  120 (475)
T 3lov_A           53 ----------FTIER-GPDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILD-TGGLHPIPKGAVMGIPTDLDLFRQTT  120 (475)
T ss_dssp             ----------CCEES-SCCCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEE-TTEEEECCSSEETTEESCHHHHTTCS
T ss_pred             ----------EEEec-CchhhhcccHHHHHHHHHcCCcceEeecCCCceEEEE-CCEEEECCCcccccCcCchHHHhhcc
Confidence                      22455 4655533 34788889999987665543233344444 6777776643        34455555


Q ss_pred             cCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchh
Q 015413          169 SLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (407)
Q Consensus       169 ~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  248 (407)
                      .++..++..+   .........  .       ......+.++.+|+++. ..+...+.+...+....+..++  .++|+.
T Consensus       121 ~~~~~~~~~~---~~~~~~~~~--~-------~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~ls~~  185 (475)
T 3lov_A          121 LLTEEEKQEV---ADLLLHPSD--S-------LRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYAGNI--DQMSTF  185 (475)
T ss_dssp             SSCHHHHHHH---HHHHHSCCT--T-------CCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGCCCT--TTSBST
T ss_pred             CCChhHHHHh---hCcccCCcc--c-------ccCCCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeecCCh--HHcCHH
Confidence            6665555421   121111100  0       01134568999999864 3333333222211111123332  236655


Q ss_pred             hHHHHHHHHHHhhccc-------c-------------CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEe
Q 015413          249 DGINRLALYNSSIGRF-------Q-------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (407)
Q Consensus       249 ~~l~~~~~~~~s~~~~-------~-------------~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~  308 (407)
                      ..+..+..+....+.+       .             ...+.+.+++||++.|+++|++.+..  ++|+++++|++|..+
T Consensus       186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~  263 (475)
T 3lov_A          186 ATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE  263 (475)
T ss_dssp             TTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe
Confidence            4444443322211110       0             00134788999999999988865433  799999999999986


Q ss_pred             cCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          309 QNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       309 ~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                        +++ +.|++.+| +++||+||+ .|...+.++.  ++|++     ...+..+++.+.++++.|++|++
T Consensus       264 --~~~-~~v~~~~g-~~~ad~vV~a~p~~~~~~ll--~~~~~-----~~~~~~~~~~~~~v~l~~~~~~~  322 (475)
T 3lov_A          264 --DGR-YRLKTDHG-PEYADYVLLTIPHPQVVQLL--PDAHL-----PELEQLTTHSTATVTMIFDQQQS  322 (475)
T ss_dssp             --TTE-EEEECTTC-CEEESEEEECSCHHHHHHHC--TTSCC-----HHHHTCCEEEEEEEEEEEECCSS
T ss_pred             --CCE-EEEEECCC-eEECCEEEECCCHHHHHHHc--CccCH-----HHHhcCCCCeEEEEEEEECCcCC
Confidence              555 56887788 899999995 5666555543  23333     33356679999999999999984

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.93  E-value=1.4e-25  Score=224.23  Aligned_cols=286  Identities=13%  Similarity=0.165  Sum_probs=171.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC------CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISN   95 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G------~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (407)
                      ++||||||||++||+||+.|+++|      ++|+|||+++++||++.|...++                           
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g---------------------------   57 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDG---------------------------   57 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTT---------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCC---------------------------
Confidence            489999999999999999999999      99999999999999999976533                           


Q ss_pred             cccccccCCCCceEEecCCCeEEee-CcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCH--------HHHhh
Q 015413           96 YASRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFK  166 (407)
Q Consensus        96 ~~~~~~~~~~~~~~idl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~  166 (407)
                                  +.+|. |++++.. ...+.+++.+.|+...+........+++. +|+...+|.+.        ..++.
T Consensus        58 ------------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~p~~~~~~~~  123 (470)
T 3i6d_A           58 ------------YIIER-GPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLV-NRTLHPMPKGAVMGIPTKIAPFVS  123 (470)
T ss_dssp             ------------CCEES-SCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEEC-SSCEEECCC---------------
T ss_pred             ------------EEecc-ChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEE-CCEEEECCCCcccCCcCchHHhhc
Confidence                        23556 4655533 34688889999987765533233345544 67777776531        11111


Q ss_pred             hccCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHHH-HHHhccCCcchhhhh
Q 015413          167 DKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLY-AIAMADYDQEVSEYV  244 (407)
Q Consensus       167 ~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  244 (407)
                      ...++..++.+  .......   ..          .....+.++.+|+++. ......+ ++.. ..+.  +..++  .+
T Consensus       124 ~~~~~~~~~~~--~~~~~~~---~~----------~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~--~~  183 (470)
T 3i6d_A          124 TGLFSLSGKAR--AAMDFIL---PA----------SKTKDDQSLGEFFRRR-VGDEVVENLIEPLLSGI--YAGDI--DK  183 (470)
T ss_dssp             ------CCSHH--HHHHHHS---CC----------CSSSSCCBHHHHHHHH-SCHHHHHHTHHHHHHHT--TCSCT--TT
T ss_pred             cCcCCHHHHHH--HhcCccc---CC----------CCCCCCcCHHHHHHHh-cCHHHHHHhccchhcEE--ecCCH--HH
Confidence            11121111111  0011110   00          1234568999999874 3433333 3222 1122  23332  23


Q ss_pred             hchhhHHHHHHHHHHhhcccc-----------------CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEE
Q 015413          245 LKTRDGINRLALYNSSIGRFQ-----------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLT  307 (407)
Q Consensus       245 ~s~~~~l~~~~~~~~s~~~~~-----------------~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~  307 (407)
                      +++...+..+..+....+...                 ...+.+.+++||++.|+++|++.+..  ++|+++++|++|..
T Consensus       184 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~  261 (470)
T 3i6d_A          184 LSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSH  261 (470)
T ss_dssp             BBHHHHCGGGCC-------------------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEE
T ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEE
Confidence            554433222111111000000                 00124778999999999988764432  79999999999998


Q ss_pred             ecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          308 DQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       308 ~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                      +  +++ +.|++.+|++++||+||+ .|...+.++.  +.|+++    ...+..+++.+.++++.|++|+|+.
T Consensus       262 ~--~~~-~~v~~~~g~~~~ad~vi~a~p~~~~~~l~--~~~~~~----~~~~~~~~~~~~~v~l~~~~~~~~~  325 (470)
T 3i6d_A          262 S--GSC-YSLELDNGVTLDADSVIVTAPHKAAAGML--SELPAI----SHLKNMHSTSVANVALGFPEGSVQM  325 (470)
T ss_dssp             C--SSS-EEEEESSSCEEEESEEEECSCHHHHHHHT--TTSTTH----HHHHTCEEEEEEEEEEEESSTTCCC
T ss_pred             c--CCe-EEEEECCCCEEECCEEEECCCHHHHHHHc--CCchhh----HHHhcCCCCceEEEEEEECchhcCC
Confidence            6  444 578888998999999995 5666545543  233332    2335567999999999999999853

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.93  E-value=2.9e-25  Score=224.44  Aligned_cols=295  Identities=12%  Similarity=0.095  Sum_probs=180.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      ...+||||||||++||+||+.|+++|++|+|||+++++||+++|++.+|                               
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g-------------------------------   59 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDG-------------------------------   59 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETT-------------------------------
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-------------------------------
Confidence            3468999999999999999999999999999999999999999976433                               


Q ss_pred             cccCCCCceEEecCCCeEEee-CcHHHHHHHhcCccccccccccc-ceeeEccCCceeecCCCHHHHhhhccCChHHHHH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~-~~~~~~~l~~~g~~~~~~f~~~~-~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (407)
                              +.+|. |++++.. ...+.+++.++|+...+.|.... ..+++. +|+.+.+|.+...++....++..++.+
T Consensus        60 --------~~~~~-g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~  129 (504)
T 1sez_A           60 --------LIWDE-GANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIAR-NGTPVLLPSNPIDLIKSNFLSTGSKLQ  129 (504)
T ss_dssp             --------EEEES-SCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEES-SSSEEECCSSHHHHHHSSSSCHHHHHH
T ss_pred             --------eEEec-CCcccccCcHHHHHHHHHcCCcccceeccCCCceEEEE-CCeEEECCCCHHHHhccccCCHHHHHH
Confidence                    34666 5776654 34788899999998776664322 234443 788888998766666555555544433


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHHH-HHHhccCCcchhhhhhchhhHHHHHH
Q 015413          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLY-AIAMADYDQEVSEYVLKTRDGINRLA  255 (407)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~l~~~~  255 (407)
                      +.  ...+...... .     .  .....+.|+.+|+++. +.+...+ ++.. ..+.  +..++  .++|+...+..+.
T Consensus       130 ~~--~~~~~~~~~~-~-----~--~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~~~~  194 (504)
T 1sez_A          130 ML--LEPILWKNKK-L-----S--QVSDSHESVSGFFQRH-FGKEVVDYLIDPFVAGT--CGGDP--DSLSMHHSFPELW  194 (504)
T ss_dssp             HH--THHHHC------------------CCCBHHHHHHHH-HCHHHHHTTHHHHHHHH--HSCCG--GGSBHHHHCHHHH
T ss_pred             Hh--HhhhccCccc-c-----c--ccCCCCccHHHHHHHH-cCHHHHHHHHHHHHccc--cCCCh--HHhhHHHHhHHHH
Confidence            21  1111110000 0     0  0113458999999865 3333333 3321 1122  22232  2356544332222


Q ss_pred             HHHHh------------hccccC-------------CCcceEeecCCcchHHHHHHHHHHhcC-cEEEeCCceeEEEEec
Q 015413          256 LYNSS------------IGRFQN-------------ALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQ  309 (407)
Q Consensus       256 ~~~~s------------~~~~~~-------------~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~  309 (407)
                      .+...            +...+.             ....+++++||+++|+++|++   ..| ++|++|++|++|..+ 
T Consensus       195 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~---~l~~~~i~~~~~V~~I~~~-  270 (504)
T 1sez_A          195 NLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICK---DLREDELRLNSRVLELSCS-  270 (504)
T ss_dssp             HHHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHT---TSCTTTEETTCCEEEEEEE-
T ss_pred             HHHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHHHHHHHHHHh---hcccceEEcCCeEEEEEec-
Confidence            11110            000000             001267899999999998875   456 799999999999987 


Q ss_pred             CCCc-----EEEEEeC--CC---cEEEcCEEEE-CCCCCCCCCCcc-chhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          310 NSGS-----YKGVRLA--SG---QDILSHKLVL-DPSFTVPGSLAS-SHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       310 ~~g~-----~~gV~~~--~G---~~i~Ad~VI~-~p~~~~~~~~~~-~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                       +++     .+.|++.  +|   ++++||+||+ .|...+.++... ..+++++..   .+...++.+.++++.|++++|
T Consensus       271 -~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~---l~~~~~~~~~~v~l~~~~~~~  346 (504)
T 1sez_A          271 -CTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNF---IPEVDYVPLSVVITTFKRENV  346 (504)
T ss_dssp             -CSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTT---SCCCCEEEEEEEEEEEEGGGB
T ss_pred             -CCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccCCcccHHH---HhcCCCCceEEEEEEEchhhc
Confidence             333     2456554  45   5789999996 465555565320 112344322   344567889999999999987


Q ss_pred             C
Q 015413          378 P  378 (407)
Q Consensus       378 ~  378 (407)
                      +
T Consensus       347 ~  347 (504)
T 1sez_A          347 K  347 (504)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.93  E-value=9.4e-25  Score=215.77  Aligned_cols=274  Identities=12%  Similarity=0.076  Sum_probs=173.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (407)
                      .||||||||++||+||+.|+++|++|+||||++++||++.++..+|                                  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g----------------------------------   46 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKG----------------------------------   46 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETT----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCC----------------------------------
Confidence            3899999999999999999999999999999999999999976543                                  


Q ss_pred             CCCCceEEecCCCeEEee---CcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHH
Q 015413          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (407)
Q Consensus       103 ~~~~~~~idl~Gp~~~~~---~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (407)
                           |.+|. ||+++..   ...+.+++.+.|...  ++...+....+..+|+.+++|...      ..+++.++..+.
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~~--~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~~~~~~~~  112 (421)
T 3nrn_A           47 -----FQLST-GALHMIPHGEDGPLAHLLRILGAKV--EIVNSNPKGKILWEGKIFHYRESW------KFLSVKEKAKAL  112 (421)
T ss_dssp             -----EEEES-SSCSEETTTTSSHHHHHHHHHTCCC--CEEECSSSCEEEETTEEEEGGGGG------GGCC--------
T ss_pred             -----EEEec-CCeEEEccCCChHHHHHHHHhCCcc--eEEECCCCeEEEECCEEEEcCCch------hhCCHhHHHHHH
Confidence                 34566 4654432   236777788877642  333333222111267777776421      235556666665


Q ss_pred             HHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCC-hhhHHHHHHH-HHhccCCcchhhhhhchhhHHHHHHHH
Q 015413          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP-HKIKSIVLYA-IAMADYDQEVSEYVLKTRDGINRLALY  257 (407)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (407)
                      +++.......             ....+.++.+|+++++++ +.++.++... ....  ..++  .++++...+..+..+
T Consensus       113 ~~~~~~~~~~-------------~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~  175 (421)
T 3nrn_A          113 KLLAEIRMNK-------------LPKEEIPADEWIKEKIGENEFLLSVLESFAGWAD--SVSL--SDLTALELAKEIRAA  175 (421)
T ss_dssp             CCHHHHHTTC-------------CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHH--SSCG--GGSBHHHHHHHHHHH
T ss_pred             HHHHHHHhcc-------------CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhc--CCCc--ccCCHHHHHHHHHHH
Confidence            5544333210             012347899999987444 4444443321 1111  1222  235655444444332


Q ss_pred             HHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCC
Q 015413          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSF  336 (407)
Q Consensus       258 ~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~  336 (407)
                      .    .++    ..++|+||+++|+++|++.+++.|++|+++++|++|..+  ++++  |. ++|++++||+||+ .|..
T Consensus       176 ~----~~~----g~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~v--V~-~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          176 L----RWG----GPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIE--EKKV--YT-RDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             H----HHC----SCEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETT--TTEE--EE-TTCCEEECSEEEECSCHH
T ss_pred             h----hcC----CcceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE--CCEE--EE-eCCcEEEeCEEEECCCHH
Confidence            1    122    157899999999999999999999999999999999875  6664  64 6888999999995 3444


Q ss_pred             CCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCC
Q 015413          337 TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (407)
Q Consensus       337 ~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~  376 (407)
                      .+.++. . .+++|+......++..+..+.++.+.++++.
T Consensus       243 ~~~~ll-~-~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~  280 (421)
T 3nrn_A          243 ETVKLI-G-RDYFDRDYLKQVDSIEPSEGIKFNLAVPGEP  280 (421)
T ss_dssp             HHHHHH-C-GGGSCHHHHHHHHTCCCCCEEEEEEEEESSC
T ss_pred             HHHHhc-C-cccCCHHHHHHHhCCCCCceEEEEEEEcCCc
Confidence            434432 1 2346654433334455668889999999984

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.93  E-value=2.2e-25  Score=226.11  Aligned_cols=288  Identities=15%  Similarity=0.134  Sum_probs=166.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      |..+||||||||++||+||+.|+++| ++|+|||+++++||+++|++..                               
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~-------------------------------   54 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY-------------------------------   54 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG-------------------------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC-------------------------------
Confidence            55689999999999999999999999 9999999999999999997541                               


Q ss_pred             ccccCCCCceEEecCCCeEEeeC--cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChH-HH
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM-EK  175 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~--~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~-~k  175 (407)
                             ..+.+|+ |++++...  ..+.+++.+.++....      ..+.+. +|..+.++.+...+......... ..
T Consensus        55 -------~G~~~D~-G~~~~~~~~~~~~~~~~~~lg~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (516)
T 1rsg_A           55 -------QGRKYDI-GASWHHDTLTNPLFLEEAQLSLNDGR------TRFVFD-DDNFIYIDEERGRVDHDKELLLEIVD  119 (516)
T ss_dssp             -------GGCEEES-SCCEECCTTTCHHHHHHHHHHHHHCC------CCEECC-CCCCEEEETTTEECTTCTTTCHHHHH
T ss_pred             -------CCcEEec-CCeEEecCCCChHHHHHHHhCCCCcc------eeEEEC-CCCEEEEcCCCccccccHHHHHHHHH
Confidence                   1234777 58887543  3566666555542110      011111 23322222211000000000000 01


Q ss_pred             HHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhc------CCChhhHHHHHHHHHhc-c-CCcchhhhhhch
Q 015413          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMA-D-YDQEVSEYVLKT  247 (407)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~  247 (407)
                      ..+.++...   ....          .....+.++.+|+.++      .+++....++...+... . +..+.  ..+|+
T Consensus       120 ~~~~~~~~~---~~~~----------~~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~--~~~s~  184 (516)
T 1rsg_A          120 NEMSKFAEL---EFHQ----------HLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDW--KLLSA  184 (516)
T ss_dssp             HHHHHHHHH---HC-----------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCT--TTSBH
T ss_pred             HHHHHHHHH---Hhhh----------ccCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCCh--HHCCh
Confidence            112222211   1100          0113457888877542      22322222211111000 0 00111  11332


Q ss_pred             hhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEc
Q 015413          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS  327 (407)
Q Consensus       248 ~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A  327 (407)
                      ..       .+   ....   +...+++| +++|+++|++.+  .+++|++|++|++|..+  ++..+.|++.+|++++|
T Consensus       185 ~~-------~~---~~~~---~~~~~~~g-~~~l~~~l~~~l--~~~~i~~~~~V~~I~~~--~~~~v~v~~~~g~~~~a  246 (516)
T 1rsg_A          185 KD-------TY---FGHQ---GRNAFALN-YDSVVQRIAQSF--PQNWLKLSCEVKSITRE--PSKNVTVNCEDGTVYNA  246 (516)
T ss_dssp             HH-------HC---CCCS---SCCEEESC-HHHHHHHHHTTS--CGGGEETTCCEEEEEEC--TTSCEEEEETTSCEEEE
T ss_pred             HH-------HH---hhcc---CcchhhhC-HHHHHHHHHHhC--CCCEEEECCEEEEEEEc--CCCeEEEEECCCcEEEC
Confidence            11       10   0111   12346777 999998887543  23689999999999985  23336888889989999


Q ss_pred             CEEEE-CCCCCCCCC---------CccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCCcEEEE
Q 015413          328 HKLVL-DPSFTVPGS---------LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVI  386 (407)
Q Consensus       328 d~VI~-~p~~~~~~~---------~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~~~~~  386 (407)
                      |+||+ .|...+...         .+.|.|+||+.+.+..++..+|.+.|+++.|++|||++.......
T Consensus       247 d~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~~~~~  315 (516)
T 1rsg_A          247 DYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIVT  315 (516)
T ss_dssp             EEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCSEEEE
T ss_pred             CEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCCCCCCCCcEEE
Confidence            99996 455544321         256899999998888889999999999999999999765443333

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.92  E-value=1.7e-24  Score=219.09  Aligned_cols=294  Identities=15%  Similarity=0.115  Sum_probs=168.0

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      .+||||||||++||+||++|++ .|++|+||||++++||+++|+...                                 
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~---------------------------------   56 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTP---------------------------------   56 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECT---------------------------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEec---------------------------------
Confidence            5899999999999999999998 499999999999999999985321                                 


Q ss_pred             ccCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccc-eeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDA-TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~-~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                           ..|.+|. ||++++... .+.+++.+.+... .+|...+. .+++. +|+.+++|...  .+  ..+........
T Consensus        57 -----~G~~~D~-G~h~~~~~~~~v~~l~~e~~~~~-~~~~~~~~~~~i~~-~g~~~~~p~~~--~~--~~~~~~~~~~~  124 (513)
T 4gde_A           57 -----EGFLYDV-GGHVIFSHYKYFDDCLDEALPKE-DDWYTHQRISYVRC-QGQWVPYPFQN--NI--SMLPKEEQVKC  124 (513)
T ss_dssp             -----TSCEEES-SCCCCCCCBHHHHHHHHHHSCSG-GGEEEEECCEEEEE-TTEEEESSGGG--GG--GGSCHHHHHHH
T ss_pred             -----CCEEEEe-CceEecCCCHHHHHHHHHhCCcc-ceeEEecCceEEEE-CCeEeecchhh--hh--hhcchhhHHHH
Confidence                 2355777 588876655 6777777765432 23333222 23443 78888887531  11  12333232222


Q ss_pred             H-HHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHH--HHHHhccCCcchhhhhhchhhHHH---
Q 015413          179 M-RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGIN---  252 (407)
Q Consensus       179 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~l~---  252 (407)
                      . .++.......            .......++.+|+.+. +.+.+.+.+.  +.....  ..++  .++++.+...   
T Consensus       125 ~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~-~g~~l~~~~~~~~~~~~~--~~~~--~~ls~~~~~~~~~  187 (513)
T 4gde_A          125 IDGMIDAALEAR------------VANTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVW--AVPT--TKMQCAWLGERVA  187 (513)
T ss_dssp             HHHHHHHHHHHH------------TCCSCCCSHHHHHHHH-HHHHHHHHTHHHHHHHHH--SSCG--GGBCSGGGCSSCC
T ss_pred             HHHHHHHHHhhh------------cccccccCHHHHHHHh-hhhhhhhhhcchhhhhhc--cCCh--HHhhHHHHHHhhc
Confidence            2 2222111110            1122346788887642 2222222211  111111  1111  1233322111   


Q ss_pred             ------HHHHHHHh--hccccCCCcceEe-ecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc
Q 015413          253 ------RLALYNSS--IGRFQNALGALIY-PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ  323 (407)
Q Consensus       253 ------~~~~~~~s--~~~~~~~~~~~~~-p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~  323 (407)
                            .+......  ...++.. ..+.+ ++||+++|+++|++.+...|++|++|++|++|..+  ++   .|++.+|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~--~~---~v~~~~G~  261 (513)
T 4gde_A          188 APNLKAVTTNVILGKTAGNWGPN-ATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN--NK---TVTLQDGT  261 (513)
T ss_dssp             CCCHHHHHHHHHHTCCCCSCBTT-BEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT--TT---EEEETTSC
T ss_pred             ccchhhhhhhhhhcccccccccc-cceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc--CC---EEEEcCCC
Confidence                  11111110  0111111 12334 58999999999999998999999999999999875  44   35578999


Q ss_pred             EEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC-CCcEEEEeCC
Q 015413          324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD-LSNFLVIFPP  389 (407)
Q Consensus       324 ~i~Ad~VI~~-p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~-~~~~~~~~p~  389 (407)
                      ++.||+||++ |...+.++..  .++    ........++..+..+.+.++.+.... .....+.+|.
T Consensus       262 ~~~ad~vI~t~P~~~l~~~l~--~~~----~~~~~~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~  323 (513)
T 4gde_A          262 TIGYKKLVSTMAVDFLAEAMN--DQE----LVGLTKQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPE  323 (513)
T ss_dssp             EEEEEEEEECSCHHHHHHHTT--CHH----HHHHHTTCCEEEEEEEEEEEESSCCTTTTTCCEEECCS
T ss_pred             EEECCEEEECCCHHHHHHhcC--chh----hHhhhhcccCCceEEEEEEEeccccccccccceeeccC
Confidence            9999999964 6554444321  122    222334456777777778887764422 2333444443

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.91  E-value=9.5e-24  Score=213.07  Aligned_cols=286  Identities=12%  Similarity=0.088  Sum_probs=171.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      ..+||||||||++||+||..|+++|++|+|||+++++||++.++....                                
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~--------------------------------   79 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE--------------------------------   79 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT--------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCC--------------------------------
Confidence            357999999999999999999999999999999999999998865211                                


Q ss_pred             ccCCCCceEEecCCCeEEeeC-cHHHHHHHhcCccccccccccc-ceeeEccCCceeecCC---CHHHHhhhccCCh---
Q 015413          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVPD---SRAAIFKDKSLGL---  172 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~-~~~~~~~~g~~~~~p~---~~~~~~~~~~l~~---  172 (407)
                           ..+.+|+ |++++... ..+.+++.+.|+... .+...+ ..+... +|.....+.   .. ..+.. .+.+   
T Consensus        80 -----~~~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~-~~~~~~~  149 (498)
T 2iid_A           80 -----AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDP-GLLKY-PVKPSEA  149 (498)
T ss_dssp             -----TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCG-GGGCC-CCCGGGT
T ss_pred             -----CCchhhc-CcccccchHHHHHHHHHHhCCCce-eecccCCccEEEe-CCeeecccccccCc-ccccc-CCCcccc
Confidence                 1233566 46665443 356677888886432 222111 122221 343221110   00 00100 0111   


Q ss_pred             ----HHH--HHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC-CChhhHHHHHHHHHhc-cCCcchhhhh
Q 015413          173 ----MEK--NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYAIAMA-DYDQEVSEYV  244 (407)
Q Consensus       173 ----~~k--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~  244 (407)
                          .+.  ..+.++...+....        .......+.+.++.+|+.+.+ +++..+..+...+... .+.       
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------  214 (498)
T 2iid_A          150 GKSAGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYY-------  214 (498)
T ss_dssp             TCCHHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTT-------
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcc--------HHHHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCcccchh-------
Confidence                110  01112222111110        000012345688999999865 5666555443221100 000       


Q ss_pred             hchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-
Q 015413          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-  323 (407)
Q Consensus       245 ~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-  323 (407)
                      .+....+...    ..+. ..   ..++++.||+++|+++|++.+   +.+|++|++|++|..+  +++ +.|++.+|+ 
T Consensus       215 ~~~~~~~~~~----~~~~-~~---~~~~~~~gG~~~l~~~l~~~l---~~~i~~~~~V~~I~~~--~~~-v~v~~~~~~~  280 (498)
T 2iid_A          215 VSFIESLKHD----DIFA-YE---KRFDEIVDGMDKLPTAMYRDI---QDKVHFNAQVIKIQQN--DQK-VTVVYETLSK  280 (498)
T ss_dssp             SBHHHHHHHH----HHHT-TC---CCEEEETTCTTHHHHHHHHHT---GGGEESSCEEEEEEEC--SSC-EEEEEECSSS
T ss_pred             HHHHHHHHHH----hccc-cC---cceEEeCCcHHHHHHHHHHhc---ccccccCCEEEEEEEC--CCe-EEEEEecCCc
Confidence            1111111111    1111 11   237789999999999998654   3489999999999986  444 467766664 


Q ss_pred             ---EEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          324 ---DILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       324 ---~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                         +++||+||+ .|...+.++  .|+|+||+.+.+..++..++.+.|+++.|++|||++
T Consensus       281 ~~~~~~ad~vI~t~p~~~~~~i--~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~w~~  338 (498)
T 2iid_A          281 ETPSVTADYVIVCTTSRAVRLI--KFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWED  338 (498)
T ss_dssp             CCCEEEESEEEECSCHHHHTTS--EEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGG
T ss_pred             ccceEEeCEEEECCChHHHhhe--ecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCCccC
Confidence               489999996 465555663  478999998888778888999999999999999854

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.91  E-value=3.5e-23  Score=207.60  Aligned_cols=296  Identities=11%  Similarity=0.103  Sum_probs=173.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      ..+||+|||||++||++|..|+++|+ +|+|+|+++++||++.+....+                               
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~-------------------------------   51 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG-------------------------------   51 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT-------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCC-------------------------------
Confidence            45899999999999999999999999 8999999999999999875432                               


Q ss_pred             cccCCCCceEEecCCCeEEee-----CcHHHHHHHh-cCcccccc-cccccceeeEccCCceeecCCCHHHHhhhccCCh
Q 015413          100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLK-SGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~-----~~~~~~~l~~-~g~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~  172 (407)
                              +.+|+ |++++..     ...+.+++.+ +|+..+.. +... ..+++..+|+.++.+.. ...+.      
T Consensus        52 --------~~~d~-g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~------  114 (472)
T 1b37_A           52 --------INVEL-GANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYL-AQNVYKEDGGVYDEDYV-QKRIE------  114 (472)
T ss_dssp             --------EEEES-SCCEEEEESSSSCCTHHHHHHTTSCCCEEECCCTTG-GGCEECSSSSBCCHHHH-HHHHH------
T ss_pred             --------cEEee-CCeEEeccCCCCCCHHHHHHHhhcCCceeeccCccc-cceeEcCCCCCCCHHHH-HHHHH------
Confidence                    34677 5787752     2367888888 78765432 2111 12233335554432110 01110      


Q ss_pred             HHHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHH--HHHhcCC--C-hhhHHHHHHHH-HhccCCcchhhhhhc
Q 015413          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE--FLTKMKL--P-HKIKSIVLYAI-AMADYDQEVSEYVLK  246 (407)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~l~~~~~--~-~~~~~~~~~~~-~~~~~~~~~~~~~~s  246 (407)
                       ....+.++.+.+.....           ...+.+.++.+  ++.+...  . .....++.... .+. +..++  ..+|
T Consensus       115 -~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s  179 (472)
T 1b37_A          115 -LADSVEEMGEKLSATLH-----------ASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYE-FAEPP--RVTS  179 (472)
T ss_dssp             -HHHHHHHHHHHHHHTSC-----------TTCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHH-HSSCG--GGBB
T ss_pred             -HHHHHHHHHHHHHHhhc-----------cccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhh-hcccc--cccc
Confidence             00112222222211110           01123445443  5543321  1 11222221111 000 01111  1122


Q ss_pred             hhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhc--------CcEEEeCCceeEEEEecCCCcEEEEE
Q 015413          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK--------GCLYVLRMPVISLLTDQNSGSYKGVR  318 (407)
Q Consensus       247 ~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~--------Gg~i~l~~~V~~I~~~~~~g~~~gV~  318 (407)
                      ....+. ...|.    .++. ...+..++||++.|+++|++.+...        |++|+++++|++|..+  ++++ .|+
T Consensus       180 ~~~~~~-~~~~~----~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~--~~~v-~v~  250 (472)
T 1b37_A          180 LQNTVP-LATFS----DFGD-DVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS--PGGV-TVK  250 (472)
T ss_dssp             STTTSS-CHHHH----HHCS-EEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC--SSCE-EEE
T ss_pred             hhhccc-ccccc----ccCC-ceeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc--CCcE-EEE
Confidence            211110 00111    1111 0113345899999999998765543        7899999999999986  5554 588


Q ss_pred             eCCCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC-CcEEEEeC
Q 015413          319 LASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIFP  388 (407)
Q Consensus       319 ~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~-~~~~~~~p  388 (407)
                      +.+|++++||+||+ .|...+.++.+.|.|+||+.+.+..++..++.+.|+++.|++|||+.. +...++++
T Consensus       251 ~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w~~~~~~~~~~~~  322 (472)
T 1b37_A          251 TEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYA  322 (472)
T ss_dssp             ETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCSCCSTTCSEEEEC
T ss_pred             ECCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCCCCCCCcceEEec
Confidence            88999999999995 465555555556889999987776677789999999999999999752 33344443

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.90  E-value=1.5e-22  Score=200.38  Aligned_cols=287  Identities=14%  Similarity=0.085  Sum_probs=174.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      ++||||||||++||+||+.|+++|++|+|||+++++||++.+.+...                                 
T Consensus         1 ~~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~c---------------------------------   47 (431)
T 3k7m_X            1 MYDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRN---------------------------------   47 (431)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSS---------------------------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccC---------------------------------
Confidence            38999999999999999999999999999999999999998865421                                 


Q ss_pred             cCCCCceEEecCCCeEEee--CcHHHHHHHhcCcccccccccccceeeE-ccCCceeec-CCCHHHHhhhccCChHHHHH
Q 015413          102 SQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFML-DADAKLCSV-PDSRAAIFKDKSLGLMEKNQ  177 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~--~~~~~~~l~~~g~~~~~~f~~~~~~~~~-~~~g~~~~~-p~~~~~~~~~~~l~~~~k~~  177 (407)
                         ...+.+|+ |++++..  ...+.+++.+.|+.........  ...+ ..++..... |... +...      .-+..
T Consensus        48 ---ipg~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~  114 (431)
T 3k7m_X           48 ---VPGLRVEI-GGAYLHRKHHPRLAAELDRYGIPTAAASEFT--SFRHRLGPTAVDQAFPIPG-SEAV------AVEAA  114 (431)
T ss_dssp             ---STTCEEES-SCCCBCTTTCHHHHHHHHHHTCCEEECCCCC--EECCBSCTTCCSSSSCCCG-GGHH------HHHHH
T ss_pred             ---CCCceEec-CCeeeCCCCcHHHHHHHHHhCCeeeecCCCC--cEEEEecCCeecCCCCCCH-HHHH------HHHHH
Confidence               01223555 4665543  3466677777776533221111  1111 112222211 1110 1100      01222


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHH
Q 015413          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY  257 (407)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (407)
                      +.+++..........+...   ....+.. .++.+|+++.+.++..+.++...+... +..+.  .+++....+.    +
T Consensus       115 ~~~l~~~~~~~~~~~~~~~---~~~~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~~~~----~  183 (431)
T 3k7m_X          115 TYTLLRDAHRIDLEKGLEN---QDLEDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNM-LGQPA--DQASALWMLQ----L  183 (431)
T ss_dssp             HHHHHHHHTTCCTTTCTTS---SSCGGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHH-HSSCT--TTSBHHHHHH----H
T ss_pred             HHHHHHHHHhcCCCCCccC---cchhhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHh-cCCCh--hhhhHHHHHH----H
Confidence            3333333333221111100   0112233 899999998888887776543221111 11121  1245443332    2


Q ss_pred             HHhhc-c----ccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          258 NSSIG-R----FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       258 ~~s~~-~----~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      +...+ .    +..  ... ++.+|++.+.++++   +..| +|++|++|++|..+  ++. +.|++.+|++++||+||+
T Consensus       184 ~~~~~~~~~~~~~~--~~~-~~~~g~~~l~~~~~---~~~g-~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad~vi~  253 (431)
T 3k7m_X          184 VAAHHYSILGVVLS--LDE-VFSNGSADLVDAMS---QEIP-EIRLQTVVTGIDQS--GDV-VNVTVKDGHAFQAHSVIV  253 (431)
T ss_dssp             HHHTTSCHHHHHHT--CCE-EETTCTHHHHHHHH---TTCS-CEESSCCEEEEECS--SSS-EEEEETTSCCEEEEEEEE
T ss_pred             HHhcCCccceeecc--hhh-hcCCcHHHHHHHHH---hhCC-ceEeCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEE
Confidence            22111 0    000  113 78999999988765   4566 99999999999876  444 468888898899999995


Q ss_pred             -CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          333 -DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       333 -~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                       .|..++..+  .|.|+||..+.+..+...++..+|+.+.|+++|+
T Consensus       254 a~~~~~l~~i--~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~  297 (431)
T 3k7m_X          254 ATPMNTWRRI--VFTPALPERRRSVIEEGHGGQGLKILIHVRGAEA  297 (431)
T ss_dssp             CSCGGGGGGS--EEESCCCHHHHHHHHHCCCCCEEEEEEEEESCCT
T ss_pred             ecCcchHhhe--eeCCCCCHHHHHHHHhCCCcceEEEEEEECCCCc
Confidence             566666664  4789999987777677779999999999999986

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.88  E-value=5.2e-22  Score=199.49  Aligned_cols=281  Identities=13%  Similarity=0.109  Sum_probs=167.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCccccc-chhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSL-SIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      ..+||+|||||++||+||+.|+++| ++|+|+|+++++||++++. ..+                               
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   56 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDEN-------------------------------   56 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTT-------------------------------
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCC-------------------------------
Confidence            4689999999999999999999999 8999999999999999985 332                               


Q ss_pred             ccccCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHH
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (407)
                              .+.+|. |+++++... .+.+++.+.. .++.....  ..+++. +|+++.+|...  .+  ..++..++..
T Consensus        57 --------g~~~~~-g~~~~~~~~~~~~~l~~~~~-~~~~~~~~--~~~~~~-~g~~~~~P~~~--~~--~~l~~~~~~~  119 (484)
T 4dsg_A           57 --------GFTWDL-GGHVIFSHYQYFDDVMDWAV-QGWNVLQR--ESWVWV-RGRWVPYPFQN--NI--HRLPEQDRKR  119 (484)
T ss_dssp             --------SCEEES-SCCCBCCSBHHHHHHHHHHC-SCEEEEEC--CCEEEE-TTEEEESSGGG--CG--GGSCHHHHHH
T ss_pred             --------CcEEee-CCcccccChHHHHHHHHHHh-hhhhhccC--ceEEEE-CCEEEEeCccc--hh--hhCCHHHHHH
Confidence                    234666 466665444 5566666654 33333222  233443 78888888421  11  2244333322


Q ss_pred             -HHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHH-HHHHhccCCcchhhhhhchhhHHH--
Q 015413          178 -LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGIN--  252 (407)
Q Consensus       178 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~l~--  252 (407)
                       +..++.. ...             .....+.++.+|+.+. +.+.+.+ ++. +.....  ..++  .++|+.+.+.  
T Consensus       120 ~~~~ll~~-~~~-------------~~~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~--~~~~--~~ls~~~~~~r~  180 (484)
T 4dsg_A          120 CLDELVRS-HAR-------------TYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVW--AVPP--CLMSTEWVEERV  180 (484)
T ss_dssp             HHHHHHHH-HHC-------------CCSSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHH--SSCG--GGBCSSSCTTTS
T ss_pred             HHHHHHHH-Hhc-------------cCCCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhc--CCCH--HHhcHHHHhccc
Confidence             2233332 110             1123467899998753 2222111 111 111111  1222  2244432111  


Q ss_pred             ------H-HHHHHHhhcc--ccCCCcceEeec-CCcchHHHHHHHHHHhcCcEEEeC--CceeEEEEecCCCcEEEEEeC
Q 015413          253 ------R-LALYNSSIGR--FQNALGALIYPI-YGQGELPQAFCRRAAVKGCLYVLR--MPVISLLTDQNSGSYKGVRLA  320 (407)
Q Consensus       253 ------~-~~~~~~s~~~--~~~~~~~~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~--~~V~~I~~~~~~g~~~gV~~~  320 (407)
                            . +...+.....  ++ ..+.+.||. ||+++|+++|++.+..  .+|+++  ++|++|..+  ++   +|+++
T Consensus       181 ~~~~l~~~~~~~~~~~~~~~~~-~~~~f~yp~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~--~~---~v~~~  252 (484)
T 4dsg_A          181 APVDLERIRRNIQENRDDLGWG-PNATFRFPQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD--AK---TITFS  252 (484)
T ss_dssp             CCCCHHHHHHHHHHTCCCCCCS-TTSEEEEESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT--TT---EEEET
T ss_pred             cCCCHHHHHHHHhhcccccCCC-ccceEEeecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec--CC---EEEEC
Confidence                  1 1111111000  11 112367775 8999999999875432  289999  569999875  45   35568


Q ss_pred             CCcEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCC
Q 015413          321 SGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (407)
Q Consensus       321 ~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~  376 (407)
                      +|++++||+||+ .|...+.++..+..|++|+...+..+..++..+.++.+.|+++.
T Consensus       253 ~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~  309 (484)
T 4dsg_A          253 NGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTP  309 (484)
T ss_dssp             TSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCC
T ss_pred             CCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCC
Confidence            899999999995 45554444432223457777777777888999999999999874

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.86  E-value=2.7e-21  Score=194.61  Aligned_cols=305  Identities=13%  Similarity=0.104  Sum_probs=165.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (407)
                      ..+||+|||||++||+||+.|+++|++|+|||+++++||+++|.+...  .+....+..                    .
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~--~~~~~~~~~--------------------~   67 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS--EETDLSGET--------------------Q   67 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC--EEECTTSCE--------------------E
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc--ccccccchh--------------------h
Confidence            467999999999999999999999999999999999999999876432  111111000                    0


Q ss_pred             ccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccc-cceeeE-ccC----CceeecCCCHHHHhhhccCChHH
Q 015413          101 LSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFML-DAD----AKLCSVPDSRAAIFKDKSLGLME  174 (407)
Q Consensus       101 ~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~-~~~~~~-~~~----g~~~~~p~~~~~~~~~~~l~~~~  174 (407)
                      .......+.+|. |+..++....+.+++.+.|+... .+... ...+++ ..+    |+...+|....+.+         
T Consensus        68 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------  136 (489)
T 2jae_A           68 KCTFSEGHFYNV-GATRIPQSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTF---------  136 (489)
T ss_dssp             ECCCCTTCEEES-SCCCEETTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHHHHHHH---------
T ss_pred             hhcccCCCcCCc-chhhcccHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHHhhhhh---------
Confidence            001123445677 57766555578888988887532 12211 123333 312    44443321110000         


Q ss_pred             HHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCCh-------h-hHHHHHHHHHhccCCcchhhhhhc
Q 015413          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPH-------K-IKSIVLYAIAMADYDQEVSEYVLK  246 (407)
Q Consensus       175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~s  246 (407)
                       ..+..++....+.... .      +......+.++.+|+++++...       . ...++............+...++.
T Consensus       137 -~~~~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (489)
T 2jae_A          137 -GYMSELLKKATDQGAL-D------QVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQ  208 (489)
T ss_dssp             -HHHHHHHHHHHHHTTT-T------TTSCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHH
T ss_pred             -ccHHHHHHHHHhcccc-c------cccchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHH
Confidence             0011111111110000 0      0000112346777777532110       0 000000000000000000000000


Q ss_pred             hhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEeCCC---
Q 015413          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASG---  322 (407)
Q Consensus       247 ~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G---  322 (407)
                      .... ..+..++........ ...+++++||+++|+++|++.+   + ++|++|++|++|..+  ++++ .|++.+|   
T Consensus       209 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l---~~~~i~~~~~V~~i~~~--~~~v-~v~~~~g~~~  280 (489)
T 2jae_A          209 EVIR-SGIGRNFSFDFGYDQ-AMMMFTPVGGMDRIYYAFQDRI---GTDNIVFGAEVTSMKNV--SEGV-TVEYTAGGSK  280 (489)
T ss_dssp             HHHH-HTTTTTGGGGGCTTT-SSSEEEETTCTTHHHHHHHHHH---CGGGEETTCEEEEEEEE--TTEE-EEEEEETTEE
T ss_pred             HHhh-hhHHHHHhhhhcccc-CccEEeecCCHHHHHHHHHHhc---CCCeEEECCEEEEEEEc--CCeE-EEEEecCCeE
Confidence            0000 000111111001111 1237789999999999998754   4 789999999999987  5554 5776666   


Q ss_pred             cEEEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413          323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (407)
Q Consensus       323 ~~i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~  378 (407)
                      ++++||+||+ .|...+..+.  +  +||+.+....++.+++.+.|+++.|++|||+
T Consensus       281 ~~~~ad~vI~a~p~~~l~~l~--~--~l~~~~~~~l~~~~~~~~~kv~l~~~~~~w~  333 (489)
T 2jae_A          281 KSITADYAICTIPPHLVGRLQ--N--NLPGDVLTALKAAKPSSSGKLGIEYSRRWWE  333 (489)
T ss_dssp             EEEEESEEEECSCHHHHTTSE--E--CCCHHHHHHHHTEECCCEEEEEEEESSCHHH
T ss_pred             EEEECCEEEECCCHHHHHhCc--c--CCCHHHHHHHHhCCCccceEEEEEeCCCCcc
Confidence            6799999995 4655666653  2  6888777766777899999999999999873

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.86  E-value=1e-20  Score=186.94  Aligned_cols=273  Identities=14%  Similarity=0.129  Sum_probs=152.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      ..+||||||||++||+||+.|+++| ++|+|||+++++||+++|++.+|                               
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G-------------------------------   53 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHG-------------------------------   53 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETT-------------------------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCC-------------------------------
Confidence            4589999999999999999999999 99999999999999999976543                               


Q ss_pred             cccCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                              +.+|+ |++++... ..+.+++.+.|+...  .......+.+ .+|+.. .|..  +....    +.....+
T Consensus        54 --------~~~d~-G~~~~~~~~~~~~~l~~~~g~~~~--~~~~~~~~~~-~~g~~~-~~~~--~~~~~----~~~~~~~  114 (424)
T 2b9w_A           54 --------RRYEM-GAIMGVPSYDTIQEIMDRTGDKVD--GPKLRREFLH-EDGEIY-VPEK--DPVRG----PQVMAAV  114 (424)
T ss_dssp             --------EECCS-SCCCBCTTCHHHHHHHHHHCCCCC--SCCCCEEEEC-TTSCEE-CGGG--CTTHH----HHHHHHH
T ss_pred             --------ccccc-CceeecCCcHHHHHHHHHhCCccc--cccccceeEc-CCCCEe-cccc--Ccccc----hhHHHHH
Confidence                    23455 46655333 467788888886421  1111112222 255543 2211  00000    0011122


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (407)
                      .++...+......... ........+.+..|+.+|+++.+.+. ..+.+...+....+. ++  .++++...+    .|.
T Consensus       115 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~a~~~~----~~~  185 (424)
T 2b9w_A          115 QKLGQLLATKYQGYDA-NGHYNKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYG-HF--DNVPAAYVL----KYL  185 (424)
T ss_dssp             HHHHHHHHTTTTTTTS-SSSSSCCCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCC-CT--TTSBHHHHH----HHS
T ss_pred             HHHHHHHhhhhhhccc-ccchhhhhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccC-Ch--HhcCHHHHH----Hhh
Confidence            2332222221111000 00000012345689999999887764 444322111111121 22  234554322    222


Q ss_pred             Hhhc--cccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCC
Q 015413          259 SSIG--RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPS  335 (407)
Q Consensus       259 ~s~~--~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~  335 (407)
                      ...+  .+..  +..+++.+|+++++++|.+   ..+.+|++|++|++|..+  ++++ .|++.+|+ ++||+||+ .|.
T Consensus       186 ~~~~~~~~~~--~~~~~~~~g~~~l~~~l~~---~l~~~v~~~~~V~~i~~~--~~~v-~v~~~~g~-~~ad~Vv~a~~~  256 (424)
T 2b9w_A          186 DFVTMMSFAK--GDLWTWADGTQAMFEHLNA---TLEHPAERNVDITRITRE--DGKV-HIHTTDWD-RESDVLVLTVPL  256 (424)
T ss_dssp             CHHHHHHHHH--TCCBCCTTCHHHHHHHHHH---HSSSCCBCSCCEEEEECC--TTCE-EEEESSCE-EEESEEEECSCH
T ss_pred             hHhhhhcccC--CceEEeCChHHHHHHHHHH---hhcceEEcCCEEEEEEEE--CCEE-EEEECCCe-EEcCEEEECCCH
Confidence            1110  0110  1245789999999998864   456789999999999876  5554 58877774 99999995 344


Q ss_pred             CCCCCCCccchhhhhhhhhhhcccCCCceEE
Q 015413          336 FTVPGSLASSHQQLQESFQAFSLSDNKGKVA  366 (407)
Q Consensus       336 ~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~  366 (407)
                      ..+.++    .|++|+.+..+ ....+..+.
T Consensus       257 ~~~~~~----l~~~~~~~~~~-~~~~~~~~~  282 (424)
T 2b9w_A          257 EKFLDY----SDADDDEREYF-SKIIHQQYM  282 (424)
T ss_dssp             HHHTTS----BCCCHHHHHHH-TTCEEEEEE
T ss_pred             HHHhhc----cCCCHHHHHHH-hcCCcceeE
Confidence            433332    35556655544 333344443

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.83  E-value=2.1e-19  Score=188.84  Aligned_cols=277  Identities=12%  Similarity=0.106  Sum_probs=161.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      +..+||||||||++||+||..|+++|++|+|||+++++||+++|....                                
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~--------------------------------  381 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSF--------------------------------  381 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCS--------------------------------
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeecccc--------------------------------
Confidence            346899999999999999999999999999999999999999986421                                


Q ss_pred             cccCCCCceEEecCCCeEEee--CcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHH
Q 015413          100 LLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (407)
Q Consensus       100 ~~~~~~~~~~idl~Gp~~~~~--~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (407)
                            ..+.+|+ |.+++.+  ...+..++.+.|+..... ... .. ++..+|....    . ....      .....
T Consensus       382 ------~G~~vd~-Ga~~i~G~~~np~~~l~~~lGl~~~~~-~~~-~~-l~~~~g~~~~----~-~~~~------~~~~~  440 (776)
T 4gut_A          382 ------KGVTVGR-GAQIVNGCINNPVALMCEQLGISMHKF-GER-CD-LIQEGGRITD----P-TIDK------RMDFH  440 (776)
T ss_dssp             ------TTCCEES-SCCEEECCTTCHHHHHHHHHTCCCEEC-CSC-CC-EECTTSCBCC----H-HHHH------HHHHH
T ss_pred             ------CCeEecc-CCeEEeCCccChHHHHHHHhCCccccc-ccc-cc-eEccCCcccc----h-hHHH------HHHHH
Confidence                  1233566 4666643  335666777777643211 111 01 1221332211    0 0000      00111


Q ss_pred             HHHHHHHHHhhcCCCccccccccccccccCCc--------HHHHHHhcCCChhhH--HHHHH---HHHhccCCcchhhhh
Q 015413          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSP--------FAEFLTKMKLPHKIK--SIVLY---AIAMADYDQEVSEYV  244 (407)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~l~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~  244 (407)
                      +.+++..+..+....          ....+.+        +.+|++..+..-...  ..+.+   .+... .....  ..
T Consensus       441 ~~~ll~~~~~~~~~~----------~~~~d~sl~~~~~~~~~~~l~~~gv~~~~l~~~~l~~~~~~l~~~-~G~~l--~~  507 (776)
T 4gut_A          441 FNALLDVVSEWRKDK----------TQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYA-CGSNL--HQ  507 (776)
T ss_dssp             HHHHHHHHHHHGGGC----------CGGGCCBHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHH-HTSCT--TS
T ss_pred             HHHHHHHHHHHhhcc----------cccccccHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHh-cCCCh--HH
Confidence            222222222221100          0112223        334445444431111  11100   00000 00000  01


Q ss_pred             hchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE
Q 015413          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (407)
Q Consensus       245 ~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~  324 (407)
                      ++...       + .....+....+....+.+|++.+.++|++     |.+|+++++|++|..+  ++. +.|++.+|++
T Consensus       508 ls~~~-------~-~~~~~~~~~~G~~~~~~~G~~~l~~aLa~-----gl~I~l~t~V~~I~~~--~~~-v~V~~~~G~~  571 (776)
T 4gut_A          508 VSARS-------W-DHNEFFAQFAGDHTLLTPGYSVIIEKLAE-----GLDIQLKSPVQCIDYS--GDE-VQVTTTDGTG  571 (776)
T ss_dssp             BBTTT-------T-TGGGGSCCCCSCEEECTTCTHHHHHHHHT-----TSCEESSCCEEEEECS--SSS-EEEEETTCCE
T ss_pred             cChhh-------h-hhhhhHHhcCCCeEEECChHHHHHHHHHh-----CCcEEcCCeeEEEEEc--CCE-EEEEECCCcE
Confidence            11110       0 00001111113356789999999988763     6789999999999986  444 4688889999


Q ss_pred             EEcCEEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCC
Q 015413          325 ILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP  378 (407)
Q Consensus       325 i~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~  378 (407)
                      ++||+||+ .|..++.+..+.|.|+||+.+.+..+...+|.+.|+++.|++|||.
T Consensus       572 i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l~~g~~~KV~l~f~~~FW~  626 (776)
T 4gut_A          572 YSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWD  626 (776)
T ss_dssp             EEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHEEEECCEEEEEECSSCTTH
T ss_pred             EEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhCCCeeEEEEEEecCccccc
Confidence            99999995 5766655444668999999888877888899999999999999994

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.81  E-value=1.3e-18  Score=181.08  Aligned_cols=103  Identities=12%  Similarity=-0.020  Sum_probs=83.4

Q ss_pred             cceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC------CcEEEcCEEEE-CCCCCCCCC
Q 015413          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVL-DPSFTVPGS  341 (407)
Q Consensus       269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~------G~~i~Ad~VI~-~p~~~~~~~  341 (407)
                      +.++.++||++.|+++|++     +..|+||++|++|..+  ++. +.|++.+      |++++||+||+ .|..++.++
T Consensus       391 g~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~--~~~-v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l  462 (662)
T 2z3y_A          391 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQ  462 (662)
T ss_dssp             SCCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEE--TTE-EEEEEEESSCTTCEEEEEESEEEECCCHHHHHCS
T ss_pred             CceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEEC--CCc-EEEEEeecccCCCCeEEEeCEEEECCCHHHHhcc
Confidence            3467899999999998875     4589999999999987  444 4666555      56899999996 476666552


Q ss_pred             --CccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          342 --LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       342 --~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                        .+.|.|+||+.+.+..++..||.+.|+++.|++|||+.
T Consensus       463 ~~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~  502 (662)
T 2z3y_A          463 PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP  502 (662)
T ss_dssp             SCSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCT
T ss_pred             cCceEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccccC
Confidence              25689999998887778888999999999999999974

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.80  E-value=1.1e-18  Score=184.59  Aligned_cols=103  Identities=12%  Similarity=-0.020  Sum_probs=83.3

Q ss_pred             cceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC------CcEEEcCEEEE-CCCCCCCCC
Q 015413          269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVL-DPSFTVPGS  341 (407)
Q Consensus       269 ~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~------G~~i~Ad~VI~-~p~~~~~~~  341 (407)
                      +.+++++||++.|+++|++     +..|+||++|++|..+  ++. +.|++.+      |++++||+||+ .|..++.++
T Consensus       562 g~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~--~~g-V~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l  633 (852)
T 2xag_A          562 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQ  633 (852)
T ss_dssp             SCCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEE--TTE-EEEEEEESSSTTCEEEEEESEEEECCCHHHHHCS
T ss_pred             CceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEc--CCc-EEEEEeecccCCCCeEEECCEEEECCCHHHHHhh
Confidence            3467899999999998875     3479999999999987  444 4566544      56899999996 476666553


Q ss_pred             --CccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCC
Q 015413          342 --LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD  379 (407)
Q Consensus       342 --~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~  379 (407)
                        .+.|.|+||+.+.+..++..+|.+.|+++.|++|||+.
T Consensus       634 ~~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~  673 (852)
T 2xag_A          634 PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDP  673 (852)
T ss_dssp             SCSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCSCT
T ss_pred             hcccccCCCCCHHHHHHHHcCCccceEEEEEEcCCcccCC
Confidence              25689999998887778888999999999999999975

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.80  E-value=2e-20  Score=183.48  Aligned_cols=270  Identities=12%  Similarity=0.109  Sum_probs=152.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      .++||||||||++||+||..|+++ |++|+|||+++++||++.|.....                               
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   54 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQ-------------------------------   54 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTT-------------------------------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccC-------------------------------
Confidence            469999999999999999999999 999999999999999999976420                               


Q ss_pred             cccCCCCceEEe-cCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHH---HhhhccCChHH
Q 015413          100 LLSQHPRNFNLD-VSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA---IFKDKSLGLME  174 (407)
Q Consensus       100 ~~~~~~~~~~id-l~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~---~~~~~~l~~~~  174 (407)
                            ..+.+| . |++++... ..+.+++.+.|..  ..+.  ...+++. +|+.+++|.+...   ++. ..+.+.+
T Consensus        55 ------~g~~~~~~-G~~~~~~~~~~~~~~~~~~g~~--~~~~--~~~~~~~-~G~~~~~p~~~~~~~~l~~-~~~~~~~  121 (399)
T 1v0j_A           55 ------TGIEVHKY-GAHLFHTSNKRVWDYVRQFTDF--TDYR--HRVFAMH-NGQAYQFPMGLGLVSQFFG-KYFTPEQ  121 (399)
T ss_dssp             ------TCCEEETT-SCCCEEESCHHHHHHHTTTCCB--CCCC--CCEEEEE-TTEEEEESSSHHHHHHHHT-SCCCHHH
T ss_pred             ------CCEEEEeC-CCcEEcCCcHHHHHHHHHhhhh--hccc--cceEEEE-CCEEEeCCCCHHHHHHHhc-ccCCHHH
Confidence                  122343 4 57766543 4778888887762  1222  1223333 7898888876422   221 1112222


Q ss_pred             HHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHH-HHHHhccCCcchhhhhhchhhHHH
Q 015413          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGIN  252 (407)
Q Consensus       175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~l~  252 (407)
                         +.+++.......             ....+.++.+|+.+. ..+.+.+ ++. +.....  ..++  .++|+.... 
T Consensus       122 ---~~~~l~~~~~~~-------------~~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~--~~~~--~~ls~~~~~-  179 (399)
T 1v0j_A          122 ---ARQLIAEQAAEI-------------DTADAQNLEEKAISL-IGRPLYEAFVKGYTAKQW--QTDP--KELPAANIT-  179 (399)
T ss_dssp             ---HHHHHHHHGGGS-------------CTTC----CCHHHHH-HCHHHHHHHTHHHHHHHH--TSCG--GGSCGGGCS-
T ss_pred             ---HHHHHHHHhhcc-------------CCCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhc--CCCh--hhcChHhhh-
Confidence               222222211110             012346788888763 3433333 322 111222  2232  235553310 


Q ss_pred             HHHHHHHhhccccCCCcceE-eecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEE-EcCEE
Q 015413          253 RLALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI-LSHKL  330 (407)
Q Consensus       253 ~~~~~~~s~~~~~~~~~~~~-~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i-~Ad~V  330 (407)
                      ++.........+.  ...+. +|+||+++|+++|++   ..|++|+||++|++|..   .     |  .   ++ +||+|
T Consensus       180 ~~~~~~~~~~~~~--~~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~I~~---~-----v--~---~~~~aD~V  241 (399)
T 1v0j_A          180 RLPVRYTFDNRYF--SDTYEGLPTDGYTAWLQNMAA---DHRIEVRLNTDWFDVRG---Q-----L--R---PGSPAAPV  241 (399)
T ss_dssp             CCCCCSSSCCCSC--CCSEEECBTTHHHHHHHHHTC---STTEEEECSCCHHHHHH---H-----H--T---TTSTTCCE
T ss_pred             cceeEeccccchh--hhhhcccccccHHHHHHHHHh---cCCeEEEECCchhhhhh---h-----h--h---hcccCCEE
Confidence            0000000000111  01243 999999999998875   57899999999999853   1     2  1   35 79999


Q ss_pred             EEC-CCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCCcEEEEeCCC
Q 015413          331 VLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR  390 (407)
Q Consensus       331 I~~-p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~~~~~~p~~  390 (407)
                      |++ |...+.++.              ....++.++....+.++.|...+  ...+.+|..
T Consensus       242 I~t~p~~~l~~~~--------------l~~l~y~s~~~~~~~~~~~~~~~--~~~~~~~~~  286 (399)
T 1v0j_A          242 VYTGPLDRYFDYA--------------EGRLGWRTLDFEVEVLPIGDFQG--TAVMNYNDL  286 (399)
T ss_dssp             EECSCHHHHTTTT--------------TCCCCEEEEEEEEEEESSSCSSS--SSEEEECCT
T ss_pred             EECCcHHHHHhhh--------------hCCCCcceEEEEEEEEccccCCC--CeEEEeCCC
Confidence            953 443333321              12345666677777888775432  235666653

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.80  E-value=4e-19  Score=183.41  Aligned_cols=108  Identities=9%  Similarity=-0.031  Sum_probs=80.9

Q ss_pred             eEeecCCcchHHHHHHHHHHhcCcEEEeCCcee--EEEEecCCC-----cEEEE-EeCCCc--EEEcCEEEE-CCCCCCC
Q 015413          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI--SLLTDQNSG-----SYKGV-RLASGQ--DILSHKLVL-DPSFTVP  339 (407)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~--~I~~~~~~g-----~~~gV-~~~~G~--~i~Ad~VI~-~p~~~~~  339 (407)
                      +.++.||+++|+++|++.+.. |+.|+|+++|+  +|.++. ++     ..+.| ...+|+  +++||+||+ .|...+.
T Consensus       339 ~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~-~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~  416 (721)
T 3ayj_A          339 YTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANAC-HSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLT  416 (721)
T ss_dssp             ECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEE-ECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHH
T ss_pred             eeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECC-CCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHh
Confidence            678999999999999876532 77899999999  999863 33     13466 446777  799999997 4644441


Q ss_pred             ----CCCcc-------c--------------hhh-h-h-------hhhhhhcccCCCceEEEEEEEe-----CCCCCCCC
Q 015413          340 ----GSLAS-------S--------------HQQ-L-Q-------ESFQAFSLSDNKGKVARGICIT-----RSSLKPDL  380 (407)
Q Consensus       340 ----~~~~~-------~--------------~p~-l-p-------~~~~~~~~~~~~g~~~k~i~i~-----~~p~~~~~  380 (407)
                          +..+.       +              .|| | |       ..++...++..|+..+|+.+.|     ++|||++.
T Consensus       417 ~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~fW~~~  496 (721)
T 3ayj_A          417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPWVPQW  496 (721)
T ss_dssp             HHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTTSCEE
T ss_pred             hccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCccccc
Confidence                11233       2              354 6 8       7777777888899999999999     99999754

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.77  E-value=3.7e-19  Score=172.44  Aligned_cols=264  Identities=12%  Similarity=0.128  Sum_probs=150.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      ++||+|||||++||+||..|+++|++|+|+|+++++||++.+...++                                 
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g---------------------------------   47 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG---------------------------------   47 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT---------------------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCC---------------------------------
Confidence            37999999999999999999999999999999999999999875432                                 


Q ss_pred             cCCCCceEEe-cCCCeEEeeCc-HHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHH
Q 015413          102 SQHPRNFNLD-VSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (407)
Q Consensus       102 ~~~~~~~~id-l~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (407)
                            +.+| . |++++.... .+.+++.+.+..  ..+...  .+.+. +|+.+++|.+...+...  +.......+.
T Consensus        48 ------~~~~~~-G~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~~~-~g~~~~~p~~~~~~~~l--~~~~~~~~~~  113 (367)
T 1i8t_A           48 ------IQIHKY-GAHIFHTNDKYIWDYVNDLVEF--NRFTNS--PLAIY-KDKLFNLPFNMNTFHQM--WGVKDPQEAQ  113 (367)
T ss_dssp             ------EEEETT-SCCCEEESCHHHHHHHHTTSCB--CCCCCC--CEEEE-TTEEEESSBSHHHHHHH--HCCCCHHHHH
T ss_pred             ------ceeecc-CCceecCCCHHHHHHHHHhhhh--hhcccc--ceEEE-CCeEEEcCCCHHHHHHH--hccCCHHHHH
Confidence                  2343 4 577765543 666777666532  222221  12222 78888888764332211  1100122233


Q ss_pred             HHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHH--HHHHhccCCcchhhhhhchhhHHHHHHHH
Q 015413          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGINRLALY  257 (407)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  257 (407)
                      +++.......             ....+.++.+|+.+. +.+.+.+.+.  +.....  ..++  .++|+... .++. .
T Consensus       114 ~~l~~~~~~~-------------~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~--~~~~--~~lsa~~~-~~l~-~  173 (367)
T 1i8t_A          114 NIINAQKKKY-------------GDKVPENLEEQAISL-VGEDLYQALIKGYTEKQW--GRSA--KELPAFII-KRIP-V  173 (367)
T ss_dssp             HHHHHHTTTT-------------CCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHH--SSCG--GGSCTTSS-CCCC-B
T ss_pred             HHHHHHhhcc-------------CCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhhh--CCCh--HHcCHHHH-hhce-e
Confidence            4443322210             112457899999865 4444443222  111222  2333  23555321 0000 0


Q ss_pred             HHhh-ccccCCCcceE-eecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-C
Q 015413          258 NSSI-GRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-P  334 (407)
Q Consensus       258 ~~s~-~~~~~~~~~~~-~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p  334 (407)
                      .... ..+.  .+.+. +|+||+++|+++|++     |++|+||++|++|..     +   |      ++.||+||++ |
T Consensus       174 ~~~~~~~~~--~~~~~~~p~gG~~~l~~~l~~-----g~~i~l~~~V~~i~~-----~---v------~~~~D~VV~a~p  232 (367)
T 1i8t_A          174 RFTFDNNYF--SDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDFLKDKD-----S---L------ASKAHRIIYTGP  232 (367)
T ss_dssp             CSSSCCCSC--CCSEEECBTTCHHHHHHHHHT-----TSEEECSCCGGGSHH-----H---H------HTTEEEEEECSC
T ss_pred             eeccccccc--cchhhcccCCCHHHHHHHHhc-----CCEEEeCCceeeech-----h---h------hccCCEEEEecc
Confidence            0000 0111  12353 999999999998875     689999999998841     1   2      2458999953 4


Q ss_pred             CCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCCcEEEEeCC
Q 015413          335 SFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP  389 (407)
Q Consensus       335 ~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~~~~~~p~  389 (407)
                      ...+.++.              ....++.++.-+.+.++++..++  ...+.+|.
T Consensus       233 ~~~~~~~~--------------l~~l~y~s~~~v~~~~d~~~~~~--~~~~~~~~  271 (367)
T 1i8t_A          233 IDQYFDYR--------------FGALEYRSLKFETERHEFPNFQG--NAVINFTD  271 (367)
T ss_dssp             HHHHTTTT--------------TCCCCEEEEEEEEEEESSSCSSS--SSEEEECC
T ss_pred             HHHHHHHh--------------hCCCCCceEEEEEEEeccccCCC--CeEEEeCC
Confidence            33222211              12344555666666788875542  34456664

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.76  E-value=1.9e-17  Score=159.87  Aligned_cols=240  Identities=11%  Similarity=0.087  Sum_probs=133.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      +..+||+|||||++||+||+.|+++|++|+|||++ +++||++.|+....      +...        .|          
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~------~~~~--------~~----------   97 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKK------GEPS--------PF----------   97 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCT------TSCC--------SS----------
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccc------cccc--------cc----------
Confidence            34689999999999999999999999999999999 99999999876321      0000        00          


Q ss_pred             ccccCCCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccc-----------------------------------
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSI-----------------------------------  142 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~-----------------------------------  142 (407)
                           ....+.+++ |++++... ..+.+++.+.|+..+..+..-                                   
T Consensus        98 -----~~~~~~~e~-G~~~~~~~~~~~~~~~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q  171 (376)
T 2e1m_A           98 -----ADPAQYAEA-GAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEF  171 (376)
T ss_dssp             -----SSTTCCEES-SCCCEETTCHHHHHHHHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTC
T ss_pred             -----cCCCcEEec-CceeecchHHHHHHHHHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccc
Confidence                 012344666 47665433 356777888888765433221                                   


Q ss_pred             ------cceeeEccCCceeecC---CCHHHHhhh-ccC-------ChHH--HHHHHHHHHHHHhhcCC-------Ccc-c
Q 015413          143 ------DATFMLDADAKLCSVP---DSRAAIFKD-KSL-------GLME--KNQLMRFFKLVQGHLSL-------DES-E  195 (407)
Q Consensus       143 ------~~~~~~~~~g~~~~~p---~~~~~~~~~-~~l-------~~~~--k~~l~~~~~~~~~~~~~-------~~~-~  195 (407)
                            ...+++. +|+.....   ... ..+.. -.+       ...+  .+.+.++++.+......       .+. .
T Consensus       172 ~~r~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  249 (376)
T 2e1m_A          172 KEPDKRNHTWIRT-NREQVRRAQYATDP-SSINEGFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWL  249 (376)
T ss_dssp             BCCCCCCCSEEEE-TTEEEEHHHHHHCT-HHHHHHTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHH
T ss_pred             cccccCCCceEEE-CCceecccccccCH-HHhccccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhh
Confidence                  1111111 33322110   000 01110 001       1111  12222333322110000       000 0


Q ss_pred             cccccccccccCCcHHHHHH-hcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEee
Q 015413          196 ENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYP  274 (407)
Q Consensus       196 ~~~~~~~~~~~~~s~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p  274 (407)
                      ....+...+++..|+.+||+ +.+.++..++++...   .++...   ..+|...   .+. +. +  .+.. ...++.+
T Consensus       250 ~~~~~~~~~lD~~S~~~~L~~~~g~s~~~~~~~~~~---~~~~~~---~~~s~l~---~l~-~~-~--~~~~-~~~~~~i  315 (376)
T 2e1m_A          250 AGWADVVRDFDGYSMGRFLREYAEFSDEAVEAIGTI---ENMTSR---LHLAFFH---SFL-GR-S--DIDP-RATYWEI  315 (376)
T ss_dssp             HHHHHHHHHHTTCBHHHHHHHTSCCCHHHHHHHHHH---TTCTTT---TTSBHHH---HHH-HC-S--CSCT-TCCEEEE
T ss_pred             ccchHHHHHHhCCCHHHHHhhccCCCHHHHHHHHhh---cCcccc---chhhHHH---HHH-Hh-h--hhcc-CCceEEE
Confidence            01112223467899999998 789999888765322   122221   1133322   221 11 1  1111 1347889


Q ss_pred             cCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEe
Q 015413          275 IYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (407)
Q Consensus       275 ~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~  308 (407)
                      .||++.|+++|++.   .+..|++|++|++|..+
T Consensus       316 ~GG~~~l~~~l~~~---l~~~i~l~~~V~~I~~~  346 (376)
T 2e1m_A          316 EGGSRMLPETLAKD---LRDQIVMGQRMVRLEYY  346 (376)
T ss_dssp             TTCTTHHHHHHHHH---GGGTEECSEEEEEEEEC
T ss_pred             CCcHHHHHHHHHHh---cCCcEEecCeEEEEEEC
Confidence            99999999998864   46789999999999986

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.74  E-value=1e-17  Score=163.25  Aligned_cols=216  Identities=13%  Similarity=0.143  Sum_probs=126.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (407)
                      |+++||+|||||++||++|..|+++|++|+|+|+++++||++.|.....                               
T Consensus         1 m~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   49 (384)
T 2bi7_A            1 MKSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE-------------------------------   49 (384)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT-------------------------------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccC-------------------------------
Confidence            3458999999999999999999999999999999999999999875421                               


Q ss_pred             cccCCCCceEE-ecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhh--ccCChHHH
Q 015413          100 LLSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKD--KSLGLMEK  175 (407)
Q Consensus       100 ~~~~~~~~~~i-dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~--~~l~~~~k  175 (407)
                            ..+.+ |. |++++... ..+.+++.+.+..  ..+.  ...+++. +|+.+++|.+...+...  ..+++.  
T Consensus        50 ------~g~~~~~~-G~~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~~~~-~g~~~~~P~~~~~~~~l~~~~~~~~--  115 (384)
T 2bi7_A           50 ------TNVMVHVY-GPHIFHTDNETVWNYVNKHAEM--MPYV--NRVKATV-NGQVFSLPINLHTINQFFSKTCSPD--  115 (384)
T ss_dssp             ------TCCEEETT-SCCCEEESCHHHHHHHHTTSCE--EECC--CCEEEEE-TTEEEEESCCHHHHHHHTTCCCCHH--
T ss_pred             ------CCceEeeC-CceEECCCCHHHHHHHHHHhhh--cccc--cceEEEE-CCEEEECCCChhHHHHHhcccCCHH--
Confidence                  11223 44 57776543 4778888887742  1221  1222333 78888888875332111  112222  


Q ss_pred             HHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHH--HHHHhccCCcchhhhhhchhhHHHH
Q 015413          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGINR  253 (407)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~l~~  253 (407)
                       .+.+++......             . ...+.++.+|+.+. ..+.+.+.+.  +..+.  +..++  .++|+... .+
T Consensus       116 -~~~~~l~~~~~~-------------~-~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~ls~~~~-~r  174 (384)
T 2bi7_A          116 -EARALIAEKGDS-------------T-IADPQTFEEEALRF-IGKELYEAFFKGYTIKQ--WGMQP--SELPASIL-KR  174 (384)
T ss_dssp             -HHHHHHHHHSCC-------------S-CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHH--HSSCG--GGSBGGGC-CS
T ss_pred             -HHHHHHHHhhhc-------------c-CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHH--hCCCH--HHhCHHHH-hc
Confidence             222333322110             0 13467999999865 4444444322  22222  22333  23554321 00


Q ss_pred             HHHHHHhhccccCCCcceE-eecCCcchHHHHHHHHHHhcCcEEEeCCcee-EEE
Q 015413          254 LALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVI-SLL  306 (407)
Q Consensus       254 ~~~~~~s~~~~~~~~~~~~-~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~-~I~  306 (407)
                      +.........+.  .+.+. +|+||+++|+++|++   ..|++|++|++|+ +|.
T Consensus       175 ~~~~~~~~~~~~--~~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~~i~  224 (384)
T 2bi7_A          175 LPVRFNYDDNYF--NHKFQGMPKCGYTQMIKSILN---HENIKVDLQREFIVEER  224 (384)
T ss_dssp             CCCCSSSCCCSC--CCSEEEEETTHHHHHHHHHHC---STTEEEEESCCCCGGGG
T ss_pred             cccccccccccc--cccccEEECcCHHHHHHHHHh---cCCCEEEECCeeehhhh
Confidence            000000000111  12353 999999999998865   4789999999999 773

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.74  E-value=7.5e-18  Score=163.96  Aligned_cols=273  Identities=13%  Similarity=0.155  Sum_probs=156.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccc-hhhhhhhhccCCCCCCCCCCCccccccccccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (407)
                      ....+||+|||||++||+||..|+++|++|+|+|+++++||++.+.. ..|                             
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G-----------------------------   76 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAG-----------------------------   76 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTS-----------------------------
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCC-----------------------------
Confidence            34579999999999999999999999999999999999999998864 222                             


Q ss_pred             cccccCCCCceEE-ecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhh--hccCChH
Q 015413           98 SRLLSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFK--DKSLGLM  173 (407)
Q Consensus        98 ~~~~~~~~~~~~i-dl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~--~~~l~~~  173 (407)
                                +.+ |. |+++++.. ..+.+++.+.+..  ..+  ....+.+. +|+++++|.+...+..  ...+++.
T Consensus        77 ----------~~~~~~-G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~g~l~~lP~~~~~~~~l~~~~~~~~  140 (397)
T 3hdq_A           77 ----------VLIHPY-GPHIFHTNSKDVFEYLSRFTEW--RPY--QHRVLASV-DGQLLPIPINLDTVNRLYGLNLTSF  140 (397)
T ss_dssp             ----------CEECTT-SCCCCEESCHHHHHHHHTSCCE--EEC--CCBEEEEE-TTEEEEESCCHHHHHHHHTCCCCHH
T ss_pred             ----------ceEeec-CCcccCCChHHHHHHHHHhhhc--ccc--cccceEEE-CCEEEEcCCChHHHHHhhccCCCHH
Confidence                      112 44 57766544 4677888877732  111  12233443 8999999987533211  1123332


Q ss_pred             HHHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHH-HHH-HHHHhccCCcchhhhhhchhhHH
Q 015413          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGI  251 (407)
Q Consensus       174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~l  251 (407)
                      .   +..++.. ..              .....+.++.+|+.+. +.+.+.+ ++. +....  +..++  +++|+.. +
T Consensus       141 ~---~~~~l~~-~~--------------~~~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~--~~~~~--~~Lsa~~-~  196 (397)
T 3hdq_A          141 Q---VEEFFAS-VA--------------EKVEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQ--WGLDP--SELDASV-T  196 (397)
T ss_dssp             H---HHHHHHH-HC--------------CCCSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHH--HSSCG--GGSBTTT-G
T ss_pred             H---HHHHHhh-cc--------------cCCCCCcCHHHHHHHh-cCHHHHHHHHHHHhCch--hCCCH--HHHHHHH-H
Confidence            2   2222221 01              1123567999998743 2233333 222 12222  23343  3477642 1


Q ss_pred             HHHHHHHHhhccccCC--Ccce-EeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcC
Q 015413          252 NRLALYNSSIGRFQNA--LGAL-IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (407)
Q Consensus       252 ~~~~~~~~s~~~~~~~--~~~~-~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad  328 (407)
                      .++.    ....+.+.  .+.+ .+|+||.++|.++|+   +..|++|+||++|+++                +.++.+|
T Consensus       197 ~Rvp----~~~~~d~~yf~~~~qg~P~gGy~~l~e~l~---~~~g~~V~l~~~v~~~----------------~~~~~~d  253 (397)
T 3hdq_A          197 ARVP----TRTNRDNRYFADTYQAMPLHGYTRMFQNML---SSPNIKVMLNTDYREI----------------ADFIPFQ  253 (397)
T ss_dssp             GGSC----CCSSCCCBSCCCSEEEEETTCHHHHHHHHT---CSTTEEEEESCCGGGT----------------TTTSCEE
T ss_pred             HhcC----cccccCccchhhhheeccCCCHHHHHHHHH---hccCCEEEECCeEEec----------------cccccCC
Confidence            1110    00001100  1224 479999999998775   4579999999999843                2235588


Q ss_pred             EEEE-CCCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCCCcEEEEeCCCCCCceEEEEeec
Q 015413          329 KLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRCKIDSWYFCLCY  402 (407)
Q Consensus       329 ~VI~-~p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~~~~~~~~p~~~~~~~~~~~~~~  402 (407)
                      +||. .|...+-..              .....++.++.-....++.+...  +.+.|-+|...   .++.++.|
T Consensus       254 ~vI~T~P~d~~~~~--------------~~g~L~yrsl~~~~~~~~~~~~~--~~~~vn~~d~~---p~tRi~e~  309 (397)
T 3hdq_A          254 HMIYTGPVDAFFDF--------------CYGKLPYRSLEFRHETHDTEQLL--PTGTVNYPNDY---AYTRVSEF  309 (397)
T ss_dssp             EEEECSCHHHHTTT--------------TTCCCCEEEEEEEEEEESSSCSC--SSSEEECSSSS---SCSEEEEH
T ss_pred             EEEEcCCHHHHHHH--------------hcCCCCCceEEEEEEEeccccCC--CCeEEEeCCCC---cceEEEee
Confidence            9995 343222110              01234466666667778866544  34456677432   44444443

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.72  E-value=1.3e-16  Score=152.96  Aligned_cols=101  Identities=11%  Similarity=-0.010  Sum_probs=81.0

Q ss_pred             eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhh
Q 015413          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQL  349 (407)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~~~~~~~p~l  349 (407)
                      .+.+.+|++.+.++|++.   .|++|+++++|++|..+  +++ +.|++.+|++++||+||+ .|.....++...+.|+|
T Consensus       104 ~~~~~~g~~~l~~~l~~~---~g~~i~~~~~V~~i~~~--~~~-~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l  177 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKE---SGAEVYFRHRVTQINLR--DDK-WEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI  177 (342)
T ss_dssp             EEECTTCTTHHHHHHHHH---HTCEEESSCCEEEEEEC--SSS-EEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS
T ss_pred             ceecCCCHHHHHHHHHHh---cCCEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcCEEEECCCHHHHHHHhccccccc
Confidence            346789999999988764   38999999999999986  444 468888888899999995 56555566654556788


Q ss_pred             hhhhhhhcccCCCceEEEEEEEeCCCCC
Q 015413          350 QESFQAFSLSDNKGKVARGICITRSSLK  377 (407)
Q Consensus       350 p~~~~~~~~~~~~g~~~k~i~i~~~p~~  377 (407)
                      |+...+..+..+|+.+.++.+.|++|++
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~  205 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGLFYEAGTK  205 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEEECSSCC-
T ss_pred             CHHHHHHHhcCCccccEEEEEEECCCCc
Confidence            8887777788899999999999999865

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.32  E-value=8.1e-12  Score=120.00  Aligned_cols=53  Identities=15%  Similarity=0.144  Sum_probs=43.9

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~Ad~VI~  332 (407)
                      ...+.++|.+.+++.|++|+++++|++|..+  ++..+.|++.+|  .+++||+||+
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~a~~VV~  203 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVR--PEGGFELDFGGAEPMTLSCRVLIN  203 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSSEEEEECTTSCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCceEEEEECCCceeEEEeCEEEE
Confidence            3578899999999999999999999999986  444346887777  4799999994

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.30  E-value=5.7e-11  Score=117.37  Aligned_cols=60  Identities=22%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             eEeecC-C---cchHHHHHHHHHHhcCcEEEeCC---ceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIY-G---QGELPQAFCRRAAVKGCLYVLRM---PVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~g-G---~~~l~~al~r~~~~~Gg~i~l~~---~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++.+.+ |   ...+.++|.+.++..|++|++++   +|++|..+  ++++++|++.+|++++||+||+
T Consensus       149 ~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~~G~~i~Ad~VV~  215 (438)
T 3dje_A          149 YFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTADGKIWRAERTFL  215 (438)
T ss_dssp             EEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEETTTEEEECSEEEE
T ss_pred             EEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEECCCCEEECCEEEE
Confidence            445555 4   45788999999999999999999   99999987  7788889998998899999994

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.24  E-value=1.2e-10  Score=121.41  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+++.+|.   ..+.++|.+.++..|++|+++++|++|..+  +++ ++|++.+|++++||+||+
T Consensus       406 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~i~Ad~VVl  467 (676)
T 3ps9_A          406 ITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK--DDC-WLLNFAGDQQATHSVVVL  467 (676)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEE
T ss_pred             EEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe--CCe-EEEEECCCCEEECCEEEE
Confidence            44565553   678899999999999999999999999987  555 588888888999999994

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.23  E-value=1.2e-10  Score=112.32  Aligned_cols=58  Identities=17%  Similarity=0.127  Sum_probs=47.5

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+++.+|   ...+.++|.+.+++.|++|+++++|++|..+  +++ ++|++.+| +++||+||+
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-~~V~t~~g-~i~a~~VV~  203 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV--DGA-WEVRCDAG-SYRAAVLVN  203 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE--TTE-EEEECSSE-EEEESEEEE
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe--CCe-EEEEeCCC-EEEcCEEEE
Confidence            4455555   2578899999999999999999999999987  555 68887766 899999995

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.22  E-value=4.6e-10  Score=113.24  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++||||||+|++||+||+.|+++|++|+||||.+.+||.+.
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            469999999999999999999999999999999999998753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.20  E-value=9.4e-12  Score=113.29  Aligned_cols=46  Identities=26%  Similarity=0.325  Sum_probs=42.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhh
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~   68 (407)
                      +||+|||||++||+||+.|+++|++|+||||++++||++.+....+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~   48 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDA   48 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCC
Confidence            8999999999999999999999999999999999999998866543

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.15  E-value=1.1e-09  Score=110.81  Aligned_cols=53  Identities=23%  Similarity=0.269  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      ..+.++|.+.++..|++|+++++|++|..+  ++++++|++.+|++++||.||+.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~~G~~i~Ad~VVlA  272 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHME--DGQITGVTLSNGEEIKSRHVVLA  272 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEES--SSBEEEEEETTSCEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEe--CCEEEEEEECCCCEEECCEEEEC
Confidence            456677778888899999999999999986  67788899999999999999954

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.15  E-value=4.3e-10  Score=117.54  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI~  332 (407)
                      .+++.+|.   ..+.++|.+.++..|++|+++++|++|+.+  +++ +.|++.+|+ +++||+||+
T Consensus       401 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~~i~Ad~VVl  463 (689)
T 3pvc_A          401 IHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI--DSQ-WQLTFGQSQAAKHHATVIL  463 (689)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC--SSS-EEEEEC-CCCCEEESEEEE
T ss_pred             EEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe--CCe-EEEEeCCCcEEEECCEEEE
Confidence            55666664   678899999999999999999999999986  555 578888887 899999994

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.14  E-value=1.6e-10  Score=113.37  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=48.1

Q ss_pred             eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..++......+.++|.+.+++.|++|+++++|++|..+  ++. +.|++.+| +++||.||+
T Consensus       124 ~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~VIl  181 (417)
T 3v76_A          124 QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT--ASG-FRVTTSAG-TVDAASLVV  181 (417)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE--TTE-EEEEETTE-EEEESEEEE
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe--CCE-EEEEECCc-EEEeeEEEE
Confidence            34566667789999999999999999999999999886  444 57887777 899999994

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.13  E-value=3.1e-09  Score=108.61  Aligned_cols=53  Identities=17%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+++.|++|+++++|++|..+ +++++++|++.  +|+  +++||.||+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~a~~VVl  311 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKD-DKGTVKGILVKGMYKGYYWVKADAVIL  311 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC-TTSCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEc-CCCeEEEEEEEeCCCcEEEEECCeEEE
Confidence            578899999999999999999999999986 23888888765  575  689999994

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.13  E-value=2.2e-09  Score=109.60  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=47.4

Q ss_pred             EeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCC-CcEEEEEeC--CCc--EEEcCEEEE
Q 015413          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (407)
Q Consensus       272 ~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~~~--~G~--~i~Ad~VI~  332 (407)
                      .++.+|   ...+.+.|.+.+++.|++|+++++|++|..+  + +++++|++.  +|+  +++||.||+
T Consensus       240 ~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~--~~g~v~Gv~~~~~~g~~~~i~A~~VVl  306 (566)
T 1qo8_A          240 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN--DDHSVVGAVVHGKHTGYYMIGAKSVVL  306 (566)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC--TTSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC--CCCcEEEEEEEeCCCcEEEEEcCEEEE
Confidence            345444   3568899999999999999999999999986  5 888888765  675  689999884

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.13  E-value=2.8e-09  Score=103.75  Aligned_cols=59  Identities=25%  Similarity=0.354  Sum_probs=48.9

Q ss_pred             eEeecCCcc---hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQG---ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~~---~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+++.+|.-   .+.++|.+.+++.|++++++++|++|..+  ++++++|++.+| +++||.||.
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~  224 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD--GEKVTGVKTTRG-TIHAGKVAL  224 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTC-CEEEEEEEE
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe--CCEEEEEEeCCc-eEECCEEEE
Confidence            455666654   78888999899999999999999999886  677778888777 799999994

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.12  E-value=9.8e-10  Score=108.93  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=50.0

Q ss_pred             eEeecC-CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+|.. ....+.++|.+.++..|++|+++++|++|..+  ++++++|++.+|++++||.||+
T Consensus       125 ~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          125 RMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEE
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec--CCcEEEEEECCCCEEECCEEEE
Confidence            345543 35688899999999999999999999999986  6777889988888899999994

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.09  E-value=1.9e-09  Score=104.30  Aligned_cols=59  Identities=25%  Similarity=0.240  Sum_probs=47.4

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.+..|   ...+.++|.+.+++.|++|+++++|++|..+  ++++++|++.+| +++||+||.
T Consensus       138 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~~g-~i~a~~VV~  199 (382)
T 1y56_B          138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE--NNEIKGVKTNKG-IIKTGIVVN  199 (382)
T ss_dssp             EEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTE-EEECSEEEE
T ss_pred             EEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE--CCEEEEEEECCc-EEECCEEEE
Confidence            3344444   3577888989889999999999999999986  677777887777 899999994

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.00  E-value=4.7e-09  Score=112.00  Aligned_cols=59  Identities=25%  Similarity=0.296  Sum_probs=48.5

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.+..|.   ..+.++|.+.+++.|++|+++++|++|..+  ++++++|++.+| +++||+||.
T Consensus       140 ~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~~G-~i~Ad~VV~  201 (830)
T 1pj5_A          140 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVS  201 (830)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEE
T ss_pred             EEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe--CCEEEEEEECCc-EEECCEEEE
Confidence            44555553   378899999999999999999999999986  677778887766 799999994

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.98  E-value=2.5e-08  Score=101.86  Aligned_cols=52  Identities=23%  Similarity=0.319  Sum_probs=43.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCC-CcEEEEEeC--CCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~~~--~G~--~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+++.|++|+++++|++|..+  + +++++|++.  +|+  +++||.||+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~~g~v~GV~~~~~~G~~~~i~A~~VVl  311 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED--ASGKVTGVLVKGEYTGYYVIKADAVVI  311 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC----CCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEEC--CCCeEEEEEEEeCCCcEEEEEcCEEEE
Confidence            478899999999999999999999999886  5 888888765  565  589999994

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.95  E-value=3.8e-10  Score=109.16  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=38.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      |++|||||||||++||+||+.|+++|++|+|+|+++.+|...
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~   43 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPV   43 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC
Confidence            678999999999999999999999999999999999887543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.77  E-value=3.9e-09  Score=100.06  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ++||+|||||.+||+||++|++  +|++|+|+|+++++||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            5799999999999999999974  59999999999999998764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.74  E-value=6.2e-09  Score=97.54  Aligned_cols=42  Identities=21%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .|+.|||||||||.+||+||..|+|+|++|+|+|++ .+||..
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~   44 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRV   44 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCee
Confidence            478899999999999999999999999999999997 456643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.73  E-value=5.7e-09  Score=98.77  Aligned_cols=60  Identities=8%  Similarity=0.083  Sum_probs=39.5

Q ss_pred             CCCCCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc----CCCCCCcccc
Q 015413            4 NESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSS   63 (407)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~----~~~~GG~~~t   63 (407)
                      |-...+++.|+-++....++||+|||||++||+||..|+++|++|+|+|+    +..+||.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A            4 SHHHHHHSSGLVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             -----------------CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             cccccccccCCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            33445555555555555679999999999999999999999999999999    4589997765

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.67  E-value=1.4e-08  Score=95.29  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=36.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|||||||||.+||+||..|++.|++|+|+|++ .+||.+.
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence            699999999999999999999999999999985 6888664

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.66  E-value=1.3e-07  Score=92.58  Aligned_cols=55  Identities=15%  Similarity=0.175  Sum_probs=47.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (407)
                      ..++.+.+.+.+++.|.++++++.|++|..+  ++++.+|++++|+++.||.||+..
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~dG~~i~aD~Vv~a~  247 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQDGSVIPADIVIVGI  247 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEESSSCEEECSEEEECS
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECC
Confidence            4677888888889999999999999999875  677778999999999999999543

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.64  E-value=1.9e-08  Score=94.29  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +.|||||||||.+||+||..|++.|++|+|+|++..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            469999999999999999999999999999999753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.63  E-value=2.2e-08  Score=96.65  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=46.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++++.+|.   ..+.++|.+.+++.|++|+++++|++|..+  ++++ +|++.+| +++||.||.
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~-~v~~~~g-~~~a~~vV~  213 (382)
T 1ryi_A          153 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEAL-FIKTPSG-DVWANHVVV  213 (382)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSE-EEEETTE-EEEEEEEEE
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE--CCEE-EEEcCCc-eEEcCEEEE
Confidence            44555554   568899999999999999999999999875  5555 7877666 899999994

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.62  E-value=2e-08  Score=97.98  Aligned_cols=53  Identities=15%  Similarity=0.026  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413            7 ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus         7 ~~~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      +-+++-++-++-.++.+||||||||++||++|+.|+++|++|+|+|+++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~   60 (407)
T 3rp8_A            8 HHHHHSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP   60 (407)
T ss_dssp             ---------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC--
T ss_pred             cccccCCCCcccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            33444444455556679999999999999999999999999999999987653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.61  E-value=9.3e-07  Score=86.16  Aligned_cols=56  Identities=16%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 015413          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (407)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (407)
                      ...++.+.+.+.+++.|.++++++.|++|..+  ++++.+|++++|+++.||.||+..
T Consensus       182 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~dG~~i~aD~Vv~a~  237 (404)
T 3fg2_P          182 VTPEISSYFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLSDGNTLPCDLVVVGV  237 (404)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCEEECSEEEECC
T ss_pred             cCHHHHHHHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECc
Confidence            35678888888889999999999999999876  677788999999999999999543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.60  E-value=1.7e-08  Score=98.53  Aligned_cols=43  Identities=26%  Similarity=0.277  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      |.++||||||||.+||+||+.|+++|.+|+|+|+++.+|+.+.
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~   44 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL   44 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcE
Confidence            5679999999999999999999999999999999999987653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.60  E-value=2.8e-08  Score=94.54  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      |+++||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            45799999999999999999999999999999999999998764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.58  E-value=2.2e-08  Score=100.38  Aligned_cols=52  Identities=29%  Similarity=0.344  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        11 ~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +-..++.. |.+|||+|||||.+||+||..|++.|++|+|+|+++.+||.+..
T Consensus        15 ~~n~~~~~-m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~   66 (491)
T 3urh_A           15 TENLYFQS-MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLN   66 (491)
T ss_dssp             ------------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             cCCcchhh-cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            33344443 34699999999999999999999999999999999999997653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.58  E-value=4e-08  Score=100.49  Aligned_cols=53  Identities=17%  Similarity=0.075  Sum_probs=38.0

Q ss_pred             CCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413            8 SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      +++.-|+-...+|..+||||||||++||++|+.|+++|++|+|+|+++..++.
T Consensus         9 ~~~~~~~~~~~~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~   61 (591)
T 3i3l_A            9 HHSSGLVPRGSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYR   61 (591)
T ss_dssp             -----------CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCC
T ss_pred             CCCCCCCCCcCcCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCc
Confidence            33344444445567799999999999999999999999999999999766543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.58  E-value=3.9e-08  Score=95.57  Aligned_cols=58  Identities=22%  Similarity=0.219  Sum_probs=44.4

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.+.+|.   ..+.++|.+.+++.|++|+++++|++|..+  ++. +.|++.+| +++||.||.
T Consensus       142 ~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~v~t~~g-~i~a~~VV~  202 (397)
T 2oln_A          142 FLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD--ADG-VSVTTDRG-TYRAGKVVL  202 (397)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEESSC-EEEEEEEEE
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc--CCe-EEEEECCC-EEEcCEEEE
Confidence            44455543   467788888888899999999999999986  554 45776554 799999994

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.57  E-value=4.9e-08  Score=101.96  Aligned_cols=61  Identities=15%  Similarity=0.185  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413            2 TGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +|.|.+..|..++.++ ....+||||||||.+||+||..|++.|++|+|+|+++++||.+..
T Consensus       372 ~g~e~~~~~~~~~~~~-~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          372 MGEEWRRGWHPERIRA-KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             TTTTTTTCCCSSCCCC-CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             cCcccccccCccccCc-ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            3555555554434444 345689999999999999999999999999999999999998654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.56  E-value=8e-08  Score=90.41  Aligned_cols=41  Identities=15%  Similarity=0.149  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (407)
                      ++||+|||+|++||+||..|+++  |++|+|+|+++.+||.++
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            46999999999999999999999  999999999999998554

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.55  E-value=4.2e-08  Score=91.06  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||||++||+||..|++. |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            358999999999999999999997 99999999999998754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.54  E-value=3.8e-08  Score=93.20  Aligned_cols=43  Identities=21%  Similarity=0.344  Sum_probs=40.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +.++||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   45 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT   45 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            4579999999999999999999999999999999999998764

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.54  E-value=4.5e-08  Score=99.66  Aligned_cols=60  Identities=27%  Similarity=0.356  Sum_probs=47.7

Q ss_pred             eEeecCC--cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC---C--cEEEcCEEEE
Q 015413          271 LIYPIYG--QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---G--QDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG--~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G--~~i~Ad~VI~  332 (407)
                      +.|+.+-  ...+..+|++.++..|++|+++++|++|..+  ++++++|++.+   |  .+++||.||.
T Consensus       160 ~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A~~VV~  226 (561)
T 3da1_A          160 GIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYAKKVVN  226 (561)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             EEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEECCEEEE
Confidence            4455442  3578889999999999999999999999987  77878887654   3  4689999994

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.53  E-value=3.5e-08  Score=98.77  Aligned_cols=51  Identities=22%  Similarity=0.287  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+.+++.|.+++++++|++|..+  +++ +.|++.+|+++.||.||+
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vi~  282 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST--ENC-YNVVLTNGQTICADRVML  282 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC--SSS-EEEEETTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee--CCE-EEEEECCCcEEEcCEEEE
Confidence            467788888888899999999999999875  455 478888999999999994

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.53  E-value=3.7e-08  Score=98.03  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+|||||||||.+||+||..|++.|++|+++|+++.+||.+..
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            4699999999999999999999999999999999999998763

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.52  E-value=4.6e-08  Score=93.76  Aligned_cols=44  Identities=18%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|.++||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            45579999999999999999999999999999999999998775

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.52  E-value=4.8e-08  Score=99.17  Aligned_cols=48  Identities=17%  Similarity=0.255  Sum_probs=41.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccch
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSI   66 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~   66 (407)
                      .+.++||||||||++|+.||..|++.|++|+|+|+++.+||.+....+
T Consensus        18 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~y   65 (549)
T 4ap3_A           18 GTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY   65 (549)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC
T ss_pred             CCCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCC
Confidence            345799999999999999999999999999999999999997754433

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.50  E-value=9.5e-08  Score=91.68  Aligned_cols=39  Identities=18%  Similarity=0.146  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .++||||||||++||++|+.|+++|++|+|||++...+|
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            468999999999999999999999999999999874443

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.50  E-value=7.1e-08  Score=92.66  Aligned_cols=50  Identities=18%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.++|.+.++..|++|+.+++|++|..+  ++. +.|++.+| +++||+||+
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHD--DDG-VTIETADG-EYQAKKAIV  198 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSS-EEEEESSC-EEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEc--CCE-EEEEECCC-eEEcCEEEE
Confidence            478888999888999999999999999886  444 46777666 599999994

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.49  E-value=6.3e-08  Score=95.71  Aligned_cols=51  Identities=20%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEE---------------ecCCCcEEEEEeCCCcEE--EcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLT---------------DQNSGSYKGVRLASGQDI--LSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~---------------~~~~g~~~gV~~~~G~~i--~Ad~VI~  332 (407)
                      ..+.++|.+.+++.|++|+.+++|++|..               +  ++++++|++.+| ++  +||+||+
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~--~~~v~~V~t~~g-~i~~~Ad~VV~  248 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ--EARASAAVLSDG-TRVEVGEKLVV  248 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS--CEEEEEEEETTS-CEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC--CCceEEEEeCCC-EEeecCCEEEE
Confidence            47889999999999999999999999987               4  566678887777 68  9999994

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.49  E-value=8.9e-08  Score=93.64  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      .++||||||||++||++|+.|+++|++|+|+|+++..+
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~   41 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR   41 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            45999999999999999999999999999999997543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.49  E-value=8.4e-08  Score=93.74  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=36.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~   61 (407)
                      |..+||||||||++||++|..|+++|.+ |+|+|+++.++...
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g   44 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLG   44 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccce
Confidence            5568999999999999999999999999 99999998876533

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.48  E-value=8.7e-08  Score=90.70  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~   62 (407)
                      ++||||||||++||+||+.|+++  |++|+|+|+++.+||.++
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            58999999999999999999997  999999999999987543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.48  E-value=9.8e-08  Score=95.91  Aligned_cols=52  Identities=19%  Similarity=0.106  Sum_probs=42.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (407)
                      ...+..+|.+.+++.|++|+++++|++|..+  + ++++|++.   +|+  +++||.||.
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~~VV~  204 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQARGLVN  204 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEESCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECCEEEE
Confidence            3568888999999999999999999999986  4 55788763   575  799999994

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.48  E-value=1.2e-07  Score=94.08  Aligned_cols=44  Identities=20%  Similarity=0.194  Sum_probs=40.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ....+||+|||||.+||+||..|++.|++|+|+|+++++||.+.
T Consensus       119 ~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          119 RELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             SSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            34568999999999999999999999999999999999999653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.48  E-value=5.7e-08  Score=91.58  Aligned_cols=42  Identities=21%  Similarity=0.324  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++||+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            358999999999999999999999999999999999999874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.47  E-value=1.1e-07  Score=89.47  Aligned_cols=42  Identities=29%  Similarity=0.397  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .++||+|||||++||+||..|++.|++|+|+|+ +.+||.+..
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            469999999999999999999999999999999 578887643

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.46  E-value=1.1e-07  Score=96.61  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +.++||||||||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~   57 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   57 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            45799999999999999999999999999999999999997653

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.46  E-value=1.3e-07  Score=92.02  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      +..+||+|||||++||++|..|+++|.+|+|+|+++.++.+
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            35689999999999999999999999999999999877653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.46  E-value=1.4e-07  Score=91.20  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.++|.+.++..|++++++++|++|..+  ++. +.|++.+| +++||.||.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  199 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIV  199 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence            578889999999999999999999999885  444 46776555 799999994

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.46  E-value=7.6e-08  Score=95.69  Aligned_cols=52  Identities=13%  Similarity=0.248  Sum_probs=42.7

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEE-eCCCcEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~~i~Ad~VI~  332 (407)
                      -.++.+.+.+.++..|.+++++++|++|..+  ++..+.|+ +.+|+ +.||.||+
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~~g~-i~aD~Vv~  262 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSAD--ADGRRVATTMKHGE-IVADQVML  262 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSCEEEEESSSCE-EEESEEEE
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCCEEEEEEcCCCe-EEeCEEEE
Confidence            3567888888889999999999999999875  33335788 88887 99999994

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.45  E-value=1.3e-07  Score=88.56  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=37.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ++||+|||||++||+||..|+++|++|+|+|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            589999999999999999999999999999998  8988764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.45  E-value=1.5e-07  Score=93.06  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~GG~~~t   63 (407)
                      +..+||+|||||++||+||..|++.|.  +|+|+|+++.+||.+..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            346899999999999999999999999  99999999999997654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.44  E-value=1.4e-07  Score=91.15  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=36.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      |..+||||||||++||++|..|+++|++|+|+|+++.+++
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            4568999999999999999999999999999999988764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.44  E-value=1.3e-07  Score=85.02  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      |.+|||||||||++||.||..|++.|.+|+|+|++.
T Consensus         1 M~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            1 MAAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            346999999999999999999999999999999984

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.43  E-value=1.4e-07  Score=88.87  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +.++||+|||||++||+||..|++.|++|+|+|++ .+||.+..
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            34699999999999999999999999999999999 78987653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.43  E-value=1.3e-07  Score=94.33  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .+|||+|||||.+||+||..|++.|++|+|+|+++.+||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46999999999999999999999999999999998666654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.41  E-value=2e-07  Score=94.16  Aligned_cols=44  Identities=34%  Similarity=0.480  Sum_probs=40.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ++.++||||||||.+|++||..|++.|++|+|+|+++.+||.+.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            45579999999999999999999999999999999998999764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.41  E-value=1.4e-07  Score=88.05  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEE-EccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~Vlv-lE~~~~~GG~~~t   63 (407)
                      .++||+|||||.+||+||..|+++|++|+| +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            468999999999999999999999999999 999 788997654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.40  E-value=1.8e-07  Score=94.90  Aligned_cols=47  Identities=21%  Similarity=0.287  Sum_probs=41.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccch
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSI   66 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~   66 (407)
                      +.++||||||||++|++||..|++.|++|+|+|+++.+||.+....+
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~y   53 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRY   53 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCC
Confidence            45689999999999999999999999999999999999998754333

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.39  E-value=1.5e-07  Score=95.37  Aligned_cols=47  Identities=17%  Similarity=0.164  Sum_probs=41.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHh-hCCCeEEEEccCCCCCCcccccch
Q 015413           20 PTAFDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPFYGSHFSSLSI   66 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La-~~G~~VlvlE~~~~~GG~~~t~~~   66 (407)
                      +.++||||||||++||+||..|+ +.|++|+|+|+++.+||.+....+
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~y   53 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRY   53 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCC
Confidence            34689999999999999999999 999999999999999997754433

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.39  E-value=2.2e-07  Score=90.37  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            45689999999999999999999999999999998763

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.39  E-value=1.8e-07  Score=89.59  Aligned_cols=43  Identities=19%  Similarity=0.305  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~t   63 (407)
                      |.++||+|||||++||+||..|++.|+ +|+|+|+++ +||.+..
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~   45 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKH   45 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHT
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcccc
Confidence            457999999999999999999999999 999999999 9986543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.38  E-value=1.3e-07  Score=94.51  Aligned_cols=43  Identities=19%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +.+|||||||||.+||+||..|++.|++|+|+|++ .+||.+..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            45799999999999999999999999999999976 88987643

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.37  E-value=2.6e-07  Score=93.85  Aligned_cols=40  Identities=13%  Similarity=0.146  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++||+|||||++||++|..|+++|.+|+|||+++.++..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~   64 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITH   64 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC
Confidence            3689999999999999999999999999999999887643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.37  E-value=1.2e-07  Score=94.66  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=40.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +.++||||||||.+|++||..|++.|++|+|+|+++.+||.+..
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            34699999999999999999999999999999999999997643

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.37  E-value=1.9e-07  Score=95.61  Aligned_cols=53  Identities=13%  Similarity=0.195  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..+.++|.+.+...|++|+++++|++|..+ +++++++|.+   .+|+  +++|+.||+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~-~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  200 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKN-QDGAVVGCTALCIETGEVVYFKARATVL  200 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEEC-TTSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEC-CCCEEEEEEEEEcCCCeEEEEEcCEEEE
Confidence            578888998888899999999999999985 2577888874   4565  589999984

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.36  E-value=3e-07  Score=89.39  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .++||||||||++||++|..|+++|++|+|+|+++.+
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            3589999999999999999999999999999998765

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.36  E-value=2.5e-07  Score=93.39  Aligned_cols=43  Identities=30%  Similarity=0.366  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC--------CCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~--------~~GG~~~t   63 (407)
                      .+|||||||||.+|++||..|++.|++|+|+|+++        .+||.+..
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   81 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVN   81 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCC
Confidence            46999999999999999999999999999999965        78997643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.36  E-value=2.3e-07  Score=87.92  Aligned_cols=43  Identities=21%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ++..+||+|||||++||+||..|++.|++|+|+|++ .+||.+.
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   53 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALM   53 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGG
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            345799999999999999999999999999999975 7888754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.36  E-value=2.8e-07  Score=92.82  Aligned_cols=38  Identities=39%  Similarity=0.621  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      +.++||||||||++||++|+.|+++|++|+|+|+++..
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~   42 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP   42 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCC
Confidence            45699999999999999999999999999999999843

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.36  E-value=2.1e-07  Score=95.09  Aligned_cols=48  Identities=33%  Similarity=0.459  Sum_probs=40.6

Q ss_pred             CCCCCCCCC-CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCC
Q 015413           11 PVPPYPPIE-PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYG   58 (407)
Q Consensus        11 ~~~~~~~~~-~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~G   58 (407)
                      -|||...+. ..+|||||||||++|+.||..|++.|.+|+|+|++. .+|
T Consensus        16 ~~~~~~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG   65 (651)
T 3ces_A           16 LVPRGSHMFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG   65 (651)
T ss_dssp             EECCCSCEECSSCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCCCCCCCCCCCcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc
Confidence            367766653 246999999999999999999999999999999984 455

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.35  E-value=2.8e-07  Score=89.93  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~   60 (407)
                      .++||||||||++||++|+.|+++  |++|+|||+++..+|.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            359999999999999999999999  9999999998765554

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.34  E-value=2.2e-07  Score=92.43  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=39.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +|||||||||.+|++||..|++.|++|+|+|+++.+||.+..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   43 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLN   43 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCC
Confidence            489999999999999999999999999999999999997653

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.34  E-value=2.1e-07  Score=87.94  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEcc----CCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~----~~~~GG~~~t   63 (407)
                      |..+||+|||||++|+++|..|++.|++|+|+|+    ....||.+..
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            4568999999999999999999999999999999    6678887543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.34  E-value=2.8e-07  Score=91.74  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +.++||||||||.+|++||..|++.|++|+|+|+++.+||.+..
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            34689999999999999999999999999999999999998653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.34  E-value=2.8e-07  Score=92.24  Aligned_cols=43  Identities=30%  Similarity=0.314  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEcc--------CCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP--------NPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~--------~~~~GG~~~t   63 (407)
                      .+|||||||||.+||+||..|++.|++|+++|+        +..+||.+..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   55 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVN   55 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecc
Confidence            469999999999999999999999999999998        6789997643

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.34  E-value=2.3e-07  Score=95.92  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..|.++|.+.+...|++|+.++.|++|..+  +++++||.+   .+|+  .++|+.||+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  214 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence            478899999888899999999999999986  788888764   4566  489999994

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.34  E-value=1.8e-07  Score=92.75  Aligned_cols=37  Identities=27%  Similarity=0.541  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .++||||||||++||+||..|+++|++|+|+|+++..
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            3689999999999999999999999999999998764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.34  E-value=2.3e-07  Score=92.52  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +.++||||||||.+|++||..|++.|++|+|+|+++.+||.+..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLN   47 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccc
Confidence            34699999999999999999999999999999999999997643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.33  E-value=2.1e-07  Score=93.00  Aligned_cols=43  Identities=21%  Similarity=0.274  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +.+|||||||||.+|++||..|++.|++|+|+|+++.+||.+.
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            3469999999999999999999999999999999999998654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.33  E-value=2.3e-07  Score=87.03  Aligned_cols=42  Identities=12%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      |..+||+|||||++||+||..|++.|++|+|+|+. .+||.+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            45799999999999999999999999999999974 7888654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.33  E-value=2.2e-07  Score=92.40  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=38.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      |+++||||||||++|++||..|++.|++|+|+|++ .+||.+.
T Consensus         1 M~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~   42 (464)
T 2a8x_A            1 MTHYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL   42 (464)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence            34699999999999999999999999999999998 7888764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.33  E-value=3.7e-07  Score=93.12  Aligned_cols=60  Identities=18%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             eEeecCC--cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 015413          271 LIYPIYG--QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG--~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (407)
                      +.|+.+.  -..+..++++.++..|++|+.+++|++|..+  ++++++|++.   +|+  +++||.||.
T Consensus       178 ~~~~dg~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~~VV~  244 (571)
T 2rgh_A          178 GVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAKLVIN  244 (571)
T ss_dssp             EEECCEECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBSCEEE
T ss_pred             EEecCCeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcCEEEE
Confidence            4455432  2357788888888999999999999999987  6777788753   343  699999994

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.33  E-value=3.2e-07  Score=96.36  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ...+||+|||||.+||+||..|++.|++|+|+|+++++||.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            34689999999999999999999999999999999999997654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.33  E-value=2.1e-07  Score=93.33  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|||||||||.+||+||..|++.|++|+|+|++ .+||.+.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~   47 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCA   47 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCccc
Confidence            599999999999999999999999999999997 5999764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.33  E-value=3.1e-07  Score=93.96  Aligned_cols=39  Identities=15%  Similarity=0.283  Sum_probs=36.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhC------CCeEEEEccCCCCCCc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSH   60 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~------G~~VlvlE~~~~~GG~   60 (407)
                      ++||||||||++||+||+.|++.      |.+|+||||++.+|+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            48999999999999999999999      9999999999998875

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.32  E-value=4e-07  Score=93.72  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ..|||||||+|++||+||..|+++|++|+|+|+.+..||.+.
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~   86 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   86 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCccc
Confidence            469999999999999999999999999999999999998553

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.32  E-value=3.4e-07  Score=91.81  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=38.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ...+||+|||||++||++|..|++.|++|+|+|+++.+|+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            34689999999999999999999999999999999999875

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.32  E-value=2.6e-07  Score=91.58  Aligned_cols=42  Identities=26%  Similarity=0.333  Sum_probs=39.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +|||||||||.+|++||..|++.|++|+|+|+++.+||.+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   42 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLR   42 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccce
Confidence            389999999999999999999999999999999999997653

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.32  E-value=3.7e-07  Score=92.97  Aligned_cols=48  Identities=27%  Similarity=0.319  Sum_probs=37.4

Q ss_pred             CCCCCCCCC--CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCCC
Q 015413           12 VPPYPPIEP--TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGS   59 (407)
Q Consensus        12 ~~~~~~~~~--~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~GG   59 (407)
                      ||....+..  .+|||||||||++|+.||..|++.|.+|+|+|++. .+|+
T Consensus        15 ~~~~~~~~~~~~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~   65 (637)
T 2zxi_A           15 VPAGSHMAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ   65 (637)
T ss_dssp             ----CCBCCGGGCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             ccccccccccCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC
Confidence            555554432  46999999999999999999999999999999984 5664

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.32  E-value=4.1e-07  Score=85.04  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~t   63 (407)
                      +|||+|||||++||+||..|++.|+ +|+|+|++ .+||.+..
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            3899999999999999999999999 99999995 78887653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.32  E-value=3.1e-07  Score=91.33  Aligned_cols=42  Identities=19%  Similarity=0.260  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +.++||||||||.+|++||..|++.|++|+|+|++ .+||.+.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            35689999999999999999999999999999998 7898765

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.32  E-value=4.8e-07  Score=90.77  Aligned_cols=40  Identities=18%  Similarity=0.227  Sum_probs=36.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      +.++||+|||||++||++|..|+++|.+|+|||+++.++.
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            4579999999999999999999999999999999987753

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.31  E-value=5.1e-07  Score=91.40  Aligned_cols=38  Identities=24%  Similarity=0.367  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      .++||||||||++||++|+.|++.|.+|+|||+++..+
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            46899999999999999999999999999999998764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.31  E-value=3.6e-07  Score=92.57  Aligned_cols=40  Identities=18%  Similarity=0.329  Sum_probs=35.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|++||+||+.|++ |.+|+||||.+..||.+
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            46899999999999999999999 99999999999887654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.30  E-value=3.2e-07  Score=91.23  Aligned_cols=51  Identities=14%  Similarity=0.094  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI~  332 (407)
                      .++.+.+.+.+++.|.++++++.|++|..+  ++. +.|++.+|+ ++.||.||+
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~G~~~i~~D~vv~  258 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALERD--AQG-TTLVAQDGTRLEGFDSVIW  258 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEEE--TTE-EEEEETTCCEEEEESEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCe-EEEEEeCCcEEEEcCEEEE
Confidence            356777888888999999999999999875  333 578888998 899999994

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.30  E-value=2.9e-07  Score=91.91  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=38.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +.++||||||||.+|++||..|++.|++|+|+|++ .+||.+.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            35799999999999999999999999999999998 6898765

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.29  E-value=4.4e-07  Score=90.70  Aligned_cols=53  Identities=8%  Similarity=0.162  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-----EEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-----~i~Ad~VI~~  333 (407)
                      .++.+.+.+.+++.|.++++++.|++|..+ +++. +.|++.++.     ++.||.||+.
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~-~~v~~~~~~~~~~~~~~~D~vi~a  284 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQ-DDGK-LLVKYKNVETGEESEDVYDTVLWA  284 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEEC-TTSC-EEEEEEETTTCCEEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCc-EEEEEecCCCCceeEEEcCEEEEC
Confidence            467778888888999999999999999875 2444 356665554     7899999943

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.29  E-value=3.3e-07  Score=90.76  Aligned_cols=51  Identities=8%  Similarity=0.094  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++.+.+.+.+++.|.++++++.|++|..+  ++..+.|++.+|+++.||.||+
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vv~  259 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKN--TDGSLTLELEDGRSETVDCLIW  259 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEEC--TTSCEEEEETTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCcEEEEEECCCcEEEcCEEEE
Confidence            57788888888899999999999999865  3222467788998999999994

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.28  E-value=4e-07  Score=93.48  Aligned_cols=52  Identities=19%  Similarity=0.320  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..|.++|.+.+...|++|+.++.|++|..+  +++++||.+   .+|+  +++|+.||+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  211 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRAKNTVI  211 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478888988888899999999999999986  788888875   3565  589999884

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.28  E-value=3.2e-07  Score=87.56  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC------CeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G------~~VlvlE~~~~~GG   59 (407)
                      .||||||||++||++|+.|+++|      ++|+|||++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            39999999999999999999998      99999999875544

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.27  E-value=6.6e-07  Score=92.54  Aligned_cols=52  Identities=13%  Similarity=0.116  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHhc--CcEEEeCCceeEEEEecCCC---cEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVK--GCLYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~--Gg~i~l~~~V~~I~~~~~~g---~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..+..+|.+.+...  |.+|+.++.|.+|..+  ++   +++||..   .+|+  +++|+.||+
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~--~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVL  227 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLD--KNTPNRIAGAVGFNLRANEVHIFKANAMVV  227 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEEC--SSSTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEe--CCccceEEEEEEEEcCCCcEEEEEeCEEEE
Confidence            46777888877777  9999999999999986  44   8888864   3454  489999994

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.26  E-value=7.1e-07  Score=90.97  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=33.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ++||||||||++||++|+.|+++|++|+|||+++..+
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            5899999999999999999999999999999988765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.26  E-value=4.6e-07  Score=90.68  Aligned_cols=52  Identities=13%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+.+++.|.+|++++.|++|..+  ++..+.|++.+|+++.||.||+
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~  282 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKN--ADGTRHVVFESGAEADYDVVML  282 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEEC--TTSCEEEEETTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEECCCcEEEcCEEEE
Confidence            367788888888999999999999999875  3322578888998999999994

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.25  E-value=4.2e-07  Score=90.36  Aligned_cols=42  Identities=31%  Similarity=0.379  Sum_probs=38.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      |+++||||||||.+|++||..|++.|++|+|+|+++ +||.+.
T Consensus         4 m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~   45 (464)
T 2eq6_A            4 MKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL   45 (464)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence            446999999999999999999999999999999988 898654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.25  E-value=5.1e-07  Score=87.50  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=33.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            47999999999999999999999999999999875

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.25  E-value=5.8e-07  Score=91.81  Aligned_cols=46  Identities=20%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC-CCCCc
Q 015413           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSH   60 (407)
Q Consensus        15 ~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~-~~GG~   60 (407)
                      ..+..+.+|||||||||++|+.||..|++.|.+|+|+|++. .+|+.
T Consensus        14 ~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~   60 (641)
T 3cp8_A           14 LVPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARM   60 (641)
T ss_dssp             ------CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             ccccccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCC
Confidence            44444557999999999999999999999999999999985 56653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.25  E-value=6e-07  Score=83.03  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=34.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      ++||+|||||++||+||..|++.|++|+|+|+++..|+
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~   39 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNR   39 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccc
Confidence            38999999999999999999999999999999876554

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.24  E-value=7.9e-07  Score=89.20  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .++||+|||||++||++|..|+++|.+|+|||+++..+.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   49 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTG   49 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999987753

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.23  E-value=4.8e-07  Score=90.69  Aligned_cols=53  Identities=9%  Similarity=0.156  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .++.+.+.+.+++.|.++++++.|++|..+  ++..+.|++.+|+++.||.||+.
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  287 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLN--TDGSKHVTFESGKTLDVDVVMMA  287 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCceEEEEECCCcEEEcCEEEEC
Confidence            367788888888999999999999999865  33335788889999999999953

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.23  E-value=6.4e-07  Score=89.74  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..+||||||||++||+||..|++. ++|+|+|+++++||.+..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            468999999999999999999999 999999999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.22  E-value=8.7e-07  Score=85.92  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .+|+|||||++||++|..|+++|++|+|+||++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999997654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.21  E-value=6.9e-07  Score=88.61  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-----CeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G-----~~VlvlE~~~~~GG~~   61 (407)
                      ..+||||||||++||+||..|++.|     .+|+|||+++.+|...
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            4689999999999999999999999     9999999999998544

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.21  E-value=1.1e-06  Score=88.97  Aligned_cols=51  Identities=16%  Similarity=0.228  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (407)
                      ..+.+.|.+.++..|++++.+ .|++|..+ +++.+++|++.+|++++||.||
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~-~~g~~~~v~~~~g~~i~ad~vV  215 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLN-NRGYISNLLTKEGRTLEADLFI  215 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEEC-TTSCEEEEEETTSCEECCSEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEc-CCCcEEEEEECCCcEEEeCEEE
Confidence            567788888888899999999 89999875 3566678888888889999999

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.21  E-value=1.2e-06  Score=83.77  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      +||+|||||++|+.||..|+++|++|+|+|++...+.-.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~   40 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA   40 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence            699999999999999999999999999999987554443

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.21  E-value=6.7e-07  Score=88.00  Aligned_cols=33  Identities=9%  Similarity=0.050  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            799999999999999999999999999999987

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.21  E-value=9.3e-07  Score=87.86  Aligned_cols=41  Identities=12%  Similarity=0.297  Sum_probs=38.8

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCe---EEEEccCCCCCCcccc
Q 015413           23 FDLIVIGTGLPESVISAAASA---SGKS---VLHLDPNPFYGSHFSS   63 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~---~G~~---VlvlE~~~~~GG~~~t   63 (407)
                      +||+|||||.+||+||..|++   .|.+   |+|+|+++.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            699999999999999999999   9999   9999999999998764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.20  E-value=5.2e-07  Score=89.50  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+|||||||||.+|++||..|++.|++|+|+|+ +.+||.+..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~   45 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLN   45 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCC
Confidence            468999999999999999999999999999999 789998753

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.20  E-value=1.1e-06  Score=89.29  Aligned_cols=51  Identities=25%  Similarity=0.234  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHhc-CcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (407)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (407)
                      ..+.+.|.+.++.. |++++++ .|++|..+ +++.+++|++.+|++++||.||
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~-~~g~~~~v~~~~G~~i~ad~vI  245 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRD-ANGNIESVRTATGRVFDADLFV  245 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEEC-TTSCEEEEEETTSCEEECSEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEc-CCCCEEEEEECCCCEEECCEEE
Confidence            46788888888888 9999999 99999875 3566778888899889999999

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.19  E-value=7e-07  Score=88.49  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=37.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|||||||||.+|++||..|++.|++|+|+|++ .+||.+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            589999999999999999999999999999998 8898764

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.19  E-value=1.6e-06  Score=89.73  Aligned_cols=38  Identities=13%  Similarity=0.181  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYG   58 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~G   58 (407)
                      .++||||||||++||++|+.|++ .|.+|+|||+++..+
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 999999999998764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.19  E-value=9.7e-07  Score=85.30  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~   57 (407)
                      .||||||||++||++|..|+++  |++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3899999999999999999999  9999999999877

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.18  E-value=1.1e-06  Score=81.93  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=35.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|||+|||||++||+||..|++.|++|+|+|+  ++||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            48999999999999999999999999999986  5788765

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.18  E-value=1.9e-06  Score=89.60  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ..+||||||||.+|+.||..|++.|++|+|+|+++++||.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            458999999999999999999999999999999999999764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.17  E-value=6.4e-07  Score=89.87  Aligned_cols=50  Identities=10%  Similarity=0.123  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++.+.+.+.+++.|.+|+++++|++|..+  +++ +.|++.+|+++.||.||+
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vv~  273 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT--GAG-VLVTMTDGRTVEGSHALM  273 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC--SSS-EEEEETTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCE-EEEEECCCcEEEcCEEEE
Confidence            57788888888999999999999999875  444 467778888999999994

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.16  E-value=7.2e-07  Score=91.47  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=36.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~   60 (407)
                      .++||||||+|++||+||+.|+++|  .+|+||||....+|.
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~   45 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence            3589999999999999999999999  999999999877664

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.16  E-value=1.5e-06  Score=74.52  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +|||+|||||++|+.+|..|++.|++|+++|+++
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3799999999999999999999999999999987

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.15  E-value=4.3e-07  Score=73.25  Aligned_cols=56  Identities=4%  Similarity=-0.100  Sum_probs=48.1

Q ss_pred             cEEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhcccCCCceEEEEEEEeCCCCCCCC
Q 015413          323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL  380 (407)
Q Consensus       323 ~~i~Ad~VI~~-p~~~~~~~~~~~~p~lp~~~~~~~~~~~~g~~~k~i~i~~~p~~~~~  380 (407)
                      ++++||+||++ |..++..  +.|+|+||+.+.+..++..||.+.|+++.|++|||++.
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~--I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~FW~~~   60 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFT   60 (130)
T ss_dssp             EEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESSCGGGCC
T ss_pred             eEEEcCEEEEcCCHHHHhc--CcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCCCCCC
Confidence            46899999964 6666676  56899999999998889999999999999999999654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.15  E-value=1.5e-06  Score=86.54  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ||||||+|++||+||..|+++|++|+|+||. ..||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            8999999999999999999999999999999 66664

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.15  E-value=1e-06  Score=88.42  Aligned_cols=53  Identities=8%  Similarity=0.018  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~Ad~VI~~  333 (407)
                      .++.+.+.+.+++.|.++++++.|++|..+ +++. +.|++++|++ +.||.||+.
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~-~~v~~~~g~~~~~~D~vi~a  270 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKV-SDKN-LSIHLSDGRIYEHFDHVIYC  270 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-STTC-EEEEETTSCEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEc-CCce-EEEEECCCcEEEECCEEEEC
Confidence            467788888888999999999999999864 1333 4677889988 999999953

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.15  E-value=1e-06  Score=89.08  Aligned_cols=52  Identities=8%  Similarity=0.004  Sum_probs=44.2

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      -.++++.+.+..+..|..+++++.|+++...  ++. +.|.+.+++++.+|.|++
T Consensus       262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~--~~~-~~v~~~~~~~~~~D~vLv  313 (542)
T 4b1b_A          262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKM--DDK-ILVEFSDKTSELYDTVLY  313 (542)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEEE--TTE-EEEEETTSCEEEESEEEE
T ss_pred             chhHHHHHHHHHHhhcceeecceEEEEEEec--CCe-EEEEEcCCCeEEEEEEEE
Confidence            4578888889899999999999999999886  554 467788899999999984

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.14  E-value=1.2e-06  Score=88.41  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~   56 (407)
                      .+||+||||+|.+|+++|.+|++ .|++|+|||+..+
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            36999999999999999999998 6899999999654

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.13  E-value=1.7e-06  Score=88.07  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (407)
                      ..+||+||||||.+||++|.+|++.| .+|+||||...
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999998 69999999765

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.13  E-value=1.6e-06  Score=88.03  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ..+||+||||+|.+|+++|.+|+++|++|+|||+....
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            35699999999999999999999999999999998753

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.09  E-value=1.8e-06  Score=93.33  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=40.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ..+||||||+|.+||+||..|++.|++|+|+|+++++||.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            468999999999999999999999999999999999999887

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.08  E-value=2e-06  Score=85.80  Aligned_cols=50  Identities=8%  Similarity=0.089  Sum_probs=40.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+.++..|.++++++.|++|..   ++++..|.+ +++++.||.||+
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~D~vi~  276 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKG---NERVEAVET-DKGTYKADLVLV  276 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE---SSBEEEEEE-TTEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEc---CCcEEEEEE-CCCEEEcCEEEE
Confidence            46778888888899999999999999975   345556765 456899999994

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.07  E-value=2.6e-06  Score=88.08  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=40.6

Q ss_pred             chHHHHHHHHHHhc-Cc-EEEeCCceeEEEEecCCC---cEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVK-GC-LYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~-Gg-~i~l~~~V~~I~~~~~~g---~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..+...|.+.++.. |+ +|+.++.|++|..+  ++   +++||..   .+|+  +++|+.||+
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~--~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  212 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD--NNDPNAVAGAVGFSVREPKFYVFKAKAVIL  212 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC--TTCTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc--CCccceeEEEEEEEecCCcEEEEEcCEEEE
Confidence            35667777777776 99 99999999999986  55   8888764   4565  589999994

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.05  E-value=2.3e-06  Score=86.45  Aligned_cols=51  Identities=10%  Similarity=0.210  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (407)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (407)
                      ..+.+.|.+.++. .|++++.+ .|++|..+ +++.+++|++.+|++++||.||
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~-~~g~~~~v~~~~g~~i~ad~vV  226 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINN-QHGDIEKLITKQNGEISGQLFI  226 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEEC-TTSCEEEEEESSSCEEECSEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEec-CCCcEEEEEECCCCEEEcCEEE
Confidence            4577788888888 89999999 59999876 3566668888888889999999

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.04  E-value=3.3e-06  Score=85.17  Aligned_cols=40  Identities=15%  Similarity=0.372  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ..+||+|||||.+|++||..|+++|++|+|+|+  ++||.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            469999999999999999999999999999996  5888765

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.04  E-value=2.1e-06  Score=86.91  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .+||+||||+|.+|+++|.+|++ |++|+|||+....++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            46999999999999999999999 999999999876544

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.04  E-value=2.8e-06  Score=83.92  Aligned_cols=42  Identities=10%  Similarity=0.097  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (407)
                      |+++||||||||.+||+||..|++.  |++|+|+|+++++|+..
T Consensus         1 M~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~   44 (449)
T 3kd9_A            1 MSLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP   44 (449)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC
Confidence            3458999999999999999999998  88999999999887643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.04  E-value=2.8e-06  Score=86.97  Aligned_cols=49  Identities=24%  Similarity=0.201  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+.++..|.+++++++|++|..+  ++   +|++.+|+++.||.||+
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~---~v~~~~g~~i~~D~Vi~  276 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA---VVRLKSGSVIQTDMLIL  276 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG--GT---EEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC--CC---EEEECCCCEEEcCEEEE
Confidence            467788888888999999999999999753  33   46778999999999994

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.04  E-value=2.1e-06  Score=85.00  Aligned_cols=43  Identities=14%  Similarity=0.121  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-C------CCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASA-S------GKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~-~------G~~VlvlE~~~~~GG~~~   62 (407)
                      |..+||+|||||.+|+.||..|++ .      |++|+|+|+++.+||.++
T Consensus         1 m~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            1 MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            346899999999999999999999 7      999999999999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.02  E-value=2.5e-06  Score=84.90  Aligned_cols=55  Identities=11%  Similarity=0.123  Sum_probs=45.1

Q ss_pred             CcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 015413          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (407)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (407)
                      -..++.+.+.+.+++.|.+++++++|++|..+  ++++ .|++.+|+++.||.||+..
T Consensus       200 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g~~i~aD~Vv~a~  254 (472)
T 3iwa_A          200 TSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE--NGKV-ARVITDKRTLDADLVILAA  254 (472)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBE-EEEEESSCEEECSEEEECS
T ss_pred             cCHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc--CCeE-EEEEeCCCEEEcCEEEECC
Confidence            34677888888889999999999999999874  5664 4777899999999999543

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.00  E-value=2.3e-06  Score=85.95  Aligned_cols=51  Identities=22%  Similarity=0.255  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (407)
                      ..+.+.|.+.+...|++++.+ .|++|..+ +++.+++|++.+|++++||.||
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~-~~~~~~~v~~~~g~~~~ad~vV  223 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQD-ERGWISGVHTKQHGEISGDLFV  223 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEEC-TTSCEEEEEESSSCEEECSEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEc-CCCCEEEEEECCCCEEEcCEEE
Confidence            467788888888899999999 99999885 3566778888889899999999

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.99  E-value=3.2e-06  Score=87.77  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=37.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-----CCCeEEEEccCCCC--CCcccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASA-----SGKSVLHLDPNPFY--GSHFSSLS   65 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~-----~G~~VlvlE~~~~~--GG~~~t~~   65 (407)
                      .++||+|||||++||++|+.|++     .|.+|+|+|+++..  .|+...+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~   58 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ   58 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEC
Confidence            36899999999999999999999     99999999998764  45544443

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.98  E-value=4.3e-06  Score=90.98  Aligned_cols=41  Identities=10%  Similarity=0.200  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~   61 (407)
                      ..+||+|||||.+||+||..|++.|+ +|+|+|+++++||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            46899999999999999999999999 799999999999974

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.98  E-value=4.6e-06  Score=84.86  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCC
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~   55 (407)
                      +...+||+||||||.+||++|.+|++. |.+|+||||..
T Consensus        15 ~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           15 VSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             cCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            344579999999999999999999975 89999999976

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.96  E-value=5e-06  Score=85.29  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ...|||+|||||.+||+||..|++.|++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            34699999999999999999999999999999983

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.94  E-value=4.5e-06  Score=82.78  Aligned_cols=42  Identities=10%  Similarity=-0.034  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~   62 (407)
                      ..+||+|||+|++|+.||..|++.|  ++|+|+|+++++||+++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            3579999999999999999999999  99999999999998764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.93  E-value=6.6e-06  Score=82.55  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      +.+||+||||+|.+|+++|.+|++.|++|+|||+..+.+
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            457999999999999999999999999999999998766

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.89  E-value=6.9e-06  Score=81.22  Aligned_cols=51  Identities=6%  Similarity=0.142  Sum_probs=42.3

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      -.++.+.+.+.+++.|.+++++++|++|..+  ++++ .|++.+| ++.||.||+
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g-~i~aD~Vv~  238 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEET--ANGI-VLETSEQ-EISCDSGIF  238 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEEC--SSCE-EEEESSC-EEEESEEEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc--CCeE-EEEECCC-EEEeCEEEE
Confidence            3567788888889999999999999999865  5555 7877666 899999994

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.87  E-value=1.2e-05  Score=80.67  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      +.+||+||||+|.+|+++|.+|++.|++|+|||+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            45799999999999999999999999999999998654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.86  E-value=7.2e-06  Score=83.24  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGS   59 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~GG   59 (407)
                      +||+||||+|.+|+++|.+|++ .|++|+||||....++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~   40 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDEN   40 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccC
Confidence            5999999999999999999999 7999999999877643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.86  E-value=8.9e-06  Score=80.39  Aligned_cols=52  Identities=19%  Similarity=0.229  Sum_probs=43.2

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      -.++.+.+.+.+++.|.+++++++|++|..+  ++++..|.+ +|+++.||.||+
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~~v~~-~g~~i~~D~vv~  241 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEV--DDEIITKTL-DGKEIKSDIAIL  241 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEE--TTEEEEEET-TSCEEEESEEEE
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC--CCeEEEEEe-CCCEEECCEEEE
Confidence            4567888888889999999999999999864  566656764 888999999994

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.86  E-value=1.3e-05  Score=78.84  Aligned_cols=54  Identities=9%  Similarity=0.039  Sum_probs=45.1

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEE--ecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLT--DQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~--~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      ..++.+.+.+.+++.|.++++++.|++|..  +  ++++.+|++.+|+++.||.||+.
T Consensus       190 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~v~~v~~~~G~~i~~D~Vv~a  245 (431)
T 1q1r_A          190 APPVSAFYEHLHREAGVDIRTGTQVCGFEMSTD--QQKVTAVLCEDGTRLPADLVIAG  245 (431)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEECTT--TCCEEEEEETTSCEEECSEEEEC
T ss_pred             hHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccC--CCcEEEEEeCCCCEEEcCEEEEC
Confidence            346778888888899999999999999986  3  56666888889999999999953

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.84  E-value=6.5e-06  Score=80.19  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~  335 (407)
                      ..+.+.+.+.+++.|.++++++.|++|..    +   +|++++|+++.||.||+.+.
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~----~---~v~~~~g~~~~~D~vi~a~G  267 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE----H---EIVDEKGNTIPADITILLPP  267 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS----S---EEEETTSCEEECSEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC----C---eEEECCCCEEeeeEEEECCC
Confidence            46778888888899999999999999852    2   36678999999999995443

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.84  E-value=1.1e-05  Score=80.65  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      ..+.+.+.+.+++.|.++++++.|++|..+  +++ +.|++++|+++.||.||+.
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~--~~~-~~v~l~dG~~i~aD~Vv~a  277 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAA  277 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEec--CCe-EEEEECCCCEEECCEEEEC
Confidence            357777888888999999999999999865  454 4788889999999999953

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.82  E-value=1.2e-05  Score=77.62  Aligned_cols=52  Identities=17%  Similarity=0.091  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .++.+.+.+.++..|.+++++++|++|..+  ++. +.|++++|++++||.||+.
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~d~vv~a  238 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA--GEG-LEAHLSDGEVIPCDLVVSA  238 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEEC
Confidence            457788888888999999999999999875  443 5788889999999999943

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.82  E-value=1.2e-05  Score=82.04  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~   57 (407)
                      +.+||+||||+|.+|+++|.+|++ .|++|+|||+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            457999999999999999999999 89999999998654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.78  E-value=1.8e-05  Score=80.14  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCeEEEEccCCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~~~GG   59 (407)
                      ..||+||||+|.+|+++|.+|+++ |++|+|||+.....+
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~   51 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG   51 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCC
Confidence            469999999999999999999998 999999999877643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.78  E-value=1.3e-05  Score=80.21  Aligned_cols=50  Identities=10%  Similarity=0.160  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+.+++.|.++++++.|++|..   ++++..|.+ +|+++.||.||+
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~---~~~v~~v~~-~g~~i~~D~Vi~  285 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG---NGKVEKIIT-DKNEYDVDMVIL  285 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC---SSSCCEEEE-SSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc---CCcEEEEEE-CCcEEECCEEEE
Confidence            46777888888899999999999999974   344445665 788999999994

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.78  E-value=1.4e-05  Score=78.91  Aligned_cols=51  Identities=10%  Similarity=0.038  Sum_probs=40.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .++.+.+.+.+++.|.++++++.|++|..   +++++.|.+ +|++++||.||+.
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~d~vi~a  241 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKVVT-DKNAYDADLVVVA  241 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEEEE-SSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEc---cCcEEEEEE-CCCEEECCEEEEC
Confidence            46778888888889999999999999975   344445665 6678999999943

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.74  E-value=1.9e-05  Score=76.93  Aligned_cols=49  Identities=22%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (407)
                      .++.+.+.+.+++.|.++++++.|++|. +  +    +|++.+|+++.||.||+..
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~----~v~~~~g~~i~~D~vi~a~  235 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV-D--G----VVLLDDGTRIAADMVVVGI  235 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T----EEEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C----EEEECCCCEEEcCEEEECc
Confidence            4577788888889999999999999997 4  3    5667899999999999543

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.70  E-value=2.2e-05  Score=77.19  Aligned_cols=36  Identities=17%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh---CCCeEEEEccCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~---~G~~VlvlE~~~~~   57 (407)
                      +.||||||||++|++||..|++   .|++|+|+|++++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4799999999999999999999   89999999999875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.69  E-value=2.7e-05  Score=74.79  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -||||||||.+|++||..|++.| +|+|+|+++..+
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~   43 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPY   43 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCc
Confidence            59999999999999999999999 999999998753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.67  E-value=2.6e-05  Score=79.28  Aligned_cols=36  Identities=11%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~G   58 (407)
                      .||+|||||++||+||..|++.  |++|+|+|+++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            5899999999999999999998  89999999999987

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.65  E-value=3.6e-05  Score=75.01  Aligned_cols=52  Identities=12%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .++.+.+.+.+++.|.++++++.|++|..+   +++.+|++++|+++.||.||+.
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~---~~~~~v~~~dg~~i~aD~Vv~a  236 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGE---GQLEQVMASDGRSFVADSALIC  236 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECS---SSCCEEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEecc---CcEEEEEECCCCEEEcCEEEEe
Confidence            456777888888899999999999999753   3556788899999999999953

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.47  E-value=2.9e-05  Score=77.76  Aligned_cols=42  Identities=17%  Similarity=0.155  Sum_probs=31.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .+.|||||||+|.+||++|+.|.++|...+++|+.+..|+..
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~   78 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPK   78 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCC
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcc
Confidence            346999999999999999999998877666666666665543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.44  E-value=8.3e-05  Score=74.45  Aligned_cols=37  Identities=11%  Similarity=0.273  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .++..|||||||.+|+.+|..|++.+++|+|+|++++
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            3456899999999999999999999999999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.39  E-value=0.00013  Score=70.43  Aligned_cols=38  Identities=11%  Similarity=0.248  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      ...|||||||++|++||..|++.|.+|+|+|++++++.
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            45799999999999999999888999999999999874

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.34  E-value=0.00011  Score=71.13  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~   60 (407)
                      .|||||||.+|++||.+|++.|  .+|+|+|+++....+
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~   42 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTC   42 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCc
Confidence            6999999999999999999877  489999999875444

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.29  E-value=0.00015  Score=71.32  Aligned_cols=48  Identities=10%  Similarity=0.142  Sum_probs=39.4

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      -.++.+.+.+..++.|.++++++.|+++.    ..   .|++++|+++.||.||+
T Consensus       187 d~~~~~~~~~~l~~~gV~i~~~~~v~~~~----~~---~v~~~~g~~~~~D~vl~  234 (437)
T 4eqs_A          187 DADMNQPILDELDKREIPYRLNEEINAIN----GN---EITFKSGKVEHYDMIIE  234 (437)
T ss_dssp             CGGGGHHHHHHHHHTTCCEEESCCEEEEE----TT---EEEETTSCEEECSEEEE
T ss_pred             cchhHHHHHHHhhccceEEEeccEEEEec----CC---eeeecCCeEEeeeeEEE
Confidence            35677778888889999999999999874    33   36678999999999994

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.24  E-value=0.00017  Score=70.66  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~   57 (407)
                      .|||||||.+|++||..|++.+  .+|+|+|++++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF   39 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC
Confidence            6999999999999999999876  799999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.37  E-value=0.0037  Score=61.33  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      ..+++|||+|..|+.+|..|++.|.+|+++|+++++..+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            368999999999999999999999999999999987764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.37  E-value=0.0027  Score=61.14  Aligned_cols=39  Identities=15%  Similarity=0.003  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++..+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~  185 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ  185 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh
Confidence            369999999999999999999999999999999987664

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.18  E-value=0.0042  Score=57.54  Aligned_cols=36  Identities=17%  Similarity=0.085  Sum_probs=33.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .|+|||+|..|+-+|..|++.|.+|+++|+++++-.
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~  182 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRA  182 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCc
Confidence            699999999999999999999999999999988743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.17  E-value=0.0068  Score=49.23  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|+|||.|--|...|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            369999999999999999999999999999974

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.13  E-value=0.0054  Score=49.29  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|||+|..|...|..|++.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999853

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.07  E-value=0.0061  Score=50.39  Aligned_cols=33  Identities=36%  Similarity=0.492  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|||+|.-|+..|..|++.|++|+++|++.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999874

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.95  E-value=0.0056  Score=60.28  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999999875

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.93  E-value=0.0074  Score=57.85  Aligned_cols=39  Identities=15%  Similarity=0.202  Sum_probs=35.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -+++|||+|..|+-+|..|++.|.+|+++|+++++..+.
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~  184 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL  184 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Confidence            479999999999999999999999999999999877654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.88  E-value=0.007  Score=59.70  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.88  E-value=0.0092  Score=49.16  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .-.++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3469999999999999999999999999999863

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.84  E-value=0.0074  Score=59.30  Aligned_cols=37  Identities=27%  Similarity=0.198  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5799999999999999999999999999999998765

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.82  E-value=0.0077  Score=59.17  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+.+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~  204 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc
Confidence            4699999999999999999999999999999988654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=95.82  E-value=0.0088  Score=59.13  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999998763

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.82  E-value=0.0083  Score=55.83  Aligned_cols=49  Identities=12%  Similarity=0.074  Sum_probs=33.6

Q ss_pred             CCCCCCCC-CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413            8 SELPVPPY-PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus         8 ~~~~~~~~-~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ++|+.+++ +.....+..|.|||+|.-|...|..|+++|++|++++++..
T Consensus         6 ~~~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A            6 HHHHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             ------------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             cccccccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45555553 33334456899999999999999999999999999998753

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.78  E-value=0.0077  Score=57.46  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            4799999999999999999999999999999998766

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.76  E-value=0.0097  Score=48.15  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..++|+|+|.-|...|..|+++|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.75  E-value=0.009  Score=50.78  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~-G~~VlvlE~~~   55 (407)
                      .-.|+|||+|..|...|..|.+. |++|+++|++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            45799999999999999999999 99999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.62  E-value=0.011  Score=57.09  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..+
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999988765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.58  E-value=0.011  Score=54.66  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            46999999999999999999999999999987653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.57  E-value=0.011  Score=58.02  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP  204 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh
Confidence            4699999999999999999999999999999988764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.36  E-value=0.017  Score=52.98  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ....|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            34579999999999999999999999999999875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.36  E-value=0.017  Score=44.73  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~   54 (407)
                      ..|+|+|+|..|...+..|.+.| ++|.+++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            46999999999999999999999 999999986

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.35  E-value=0.015  Score=57.39  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~  203 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc
Confidence            3699999999999999999999999999999988754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.26  E-value=0.011  Score=58.49  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            5799999999999999999999999999999998776

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.25  E-value=0.018  Score=53.17  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999874

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.17  E-value=0.02  Score=55.83  Aligned_cols=38  Identities=26%  Similarity=0.214  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  187 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER  187 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            46999999999999999999999999999999987654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.16  E-value=0.017  Score=57.23  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++-.+
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  232 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG  232 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhh
Confidence            46999999999999999999999999999999987653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.14  E-value=0.019  Score=56.57  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            4699999999999999999999999999999998865

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.11  E-value=0.019  Score=56.51  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.11  E-value=0.034  Score=52.80  Aligned_cols=47  Identities=17%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        13 ~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .+.++-.+.++||||||||++||++|+.|+++|++|+|||+++..+|
T Consensus         8 ~~~~~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A            8 MARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             ------CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             HHHhhccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            33344345679999999999999999999999999999999975554

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.08  E-value=0.025  Score=55.35  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|.|||+|.-|...|..|+++|++|+++|.+..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4699999999999999999999999999999865

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=95.06  E-value=0.016  Score=57.35  Aligned_cols=37  Identities=16%  Similarity=0.108  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            4799999999999999999999999999999998765

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.05  E-value=0.022  Score=56.51  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            47999999999999999999999999999999998654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.03  E-value=0.021  Score=55.23  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  181 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR  181 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh
Confidence            46999999999999999999999999999999987654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.02  E-value=0.019  Score=53.46  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|.|||||.-|..-|..++.+|++|+++|.+..
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999998653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=94.97  E-value=0.024  Score=55.47  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=35.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            7999999999999999999999999999999987765

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.87  E-value=0.021  Score=53.87  Aligned_cols=36  Identities=11%  Similarity=0.048  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++++++.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~  202 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLN  202 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            379999999999999999999999999999988765

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.86  E-value=0.017  Score=56.91  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.85  E-value=0.025  Score=51.99  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  179 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR  179 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC
Confidence            479999999999999999999999999999998874

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.79  E-value=0.025  Score=55.86  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  222 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR  222 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc
Confidence            4699999999999999999999999999999988754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.78  E-value=0.025  Score=53.65  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=32.1

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        17 ~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +++++...|.|||.|.-|...|..|+++|++|++++++.
T Consensus        17 ~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           17 NLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            456666789999999999999999999999999999874

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.74  E-value=0.031  Score=56.18  Aligned_cols=34  Identities=18%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|+|||+|.+|+-+|..|++.|.+|+|+++.++
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            4799999999999999999999999999999876

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.73  E-value=0.027  Score=56.07  Aligned_cols=37  Identities=8%  Similarity=0.020  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR  213 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc
Confidence            3699999999999999999999999999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.70  E-value=0.032  Score=53.74  Aligned_cols=40  Identities=25%  Similarity=0.270  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++..+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~  182 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVV  182 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhcc
Confidence            3699999999999999999999999999999998876543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.70  E-value=0.025  Score=45.40  Aligned_cols=32  Identities=31%  Similarity=0.331  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..|+|+|+|-.|...|..|.+.|++|+++|++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35999999999999999999999999999976

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.65  E-value=0.031  Score=50.00  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ......|.|||+|.-|...|..|+++|++|++.+++.
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3445679999999999999999999999999998864

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.64  E-value=0.029  Score=51.58  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            36999999999999999999999999999999887

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=94.61  E-value=0.056  Score=52.69  Aligned_cols=41  Identities=27%  Similarity=0.294  Sum_probs=36.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~GG~   60 (407)
                      |.++||||||||++||++|+.|+++| ++|+|||+++.+|+.
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~~g   62 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSG   62 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTTCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCCCC
Confidence            46799999999999999999999999 999999996666643

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.58  E-value=0.036  Score=54.00  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +..+.|||.|..||..|..||++|++|+.+|-+.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4579999999999999999999999999999764

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.57  E-value=0.032  Score=54.91  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++-.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR  213 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC
Confidence            4699999999999999999999999999999988654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.55  E-value=0.036  Score=53.56  Aligned_cols=39  Identities=23%  Similarity=0.203  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~  191 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV  191 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh
Confidence            469999999999999999999999999999999886654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.55  E-value=0.026  Score=55.07  Aligned_cols=38  Identities=11%  Similarity=0.135  Sum_probs=35.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~  186 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM  186 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc
Confidence            69999999999999999999999999999999876543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=94.54  E-value=0.032  Score=54.68  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence            3699999999999999999999999999999988755

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.53  E-value=0.033  Score=54.84  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999998765

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.53  E-value=0.031  Score=52.73  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ....|.|||+|..|...|..|+++|++|++++++.
T Consensus         3 ~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            3 ESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            34579999999999999999999999999998863

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.52  E-value=0.035  Score=55.85  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .-.|+|||+|.+|+-+|..|++.|.+|+|+++.++
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            34799999999999999999999999999999876

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.48  E-value=0.03  Score=55.15  Aligned_cols=37  Identities=11%  Similarity=0.037  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++++++-+
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~  234 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMG  234 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCC
Confidence            3699999999999999999999999999999877533

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=94.47  E-value=0.034  Score=51.68  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~  195 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR  195 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC
Confidence            479999999999999999999999999999998863

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.44  E-value=0.028  Score=49.20  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|+|||+|--|...|..|.++|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.43  E-value=0.038  Score=54.18  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ...|.|||.|.+|+++|..|++.|++|++.|++..
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            35799999999999999999999999999999763

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.43  E-value=0.039  Score=51.75  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ..|.|||||..|.+.|..|++.|+ +|.++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            579999999999999999999998 999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.43  E-value=0.026  Score=56.84  Aligned_cols=35  Identities=14%  Similarity=0.114  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ...|+|||+|.+|+-+|..|++.|.+|+|+++.++
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            34799999999999999999999999999999876

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.42  E-value=0.035  Score=51.22  Aligned_cols=36  Identities=17%  Similarity=0.074  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  181 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR  181 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc
Confidence            479999999999999999999999999999998764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.41  E-value=0.029  Score=52.19  Aligned_cols=48  Identities=21%  Similarity=0.115  Sum_probs=30.6

Q ss_pred             CCCCCCCC-CCCCC-CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 015413            7 ESELPVPP-YPPIE-PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (407)
Q Consensus         7 ~~~~~~~~-~~~~~-~~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (407)
                      |+-|+-+. +|.++ +....|.|||+|.-|...|..|+++|+ +|++++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A            7 HSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             ------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             cccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            45555444 45432 234679999999999999999999999 99999996

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.39  E-value=0.036  Score=51.72  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~  191 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC
Confidence            479999999999999999999999999999998763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.38  E-value=0.037  Score=51.30  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            369999999999999999999999999999998764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.33  E-value=0.039  Score=52.37  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +....|.|||+|.-|.+.|..|+++|++|.+++++.
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            334689999999999999999999999999999863

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.33  E-value=0.036  Score=54.83  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4679999999999999999999999999999863

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=94.32  E-value=0.035  Score=51.63  Aligned_cols=37  Identities=8%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~  189 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence            4799999999999999999999999999999988754

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=94.25  E-value=0.11  Score=49.69  Aligned_cols=38  Identities=24%  Similarity=0.502  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      .++||||||||++||++|+.|+++|++|+||||++..+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            35899999999999999999999999999999998765

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.24  E-value=0.039  Score=51.82  Aligned_cols=33  Identities=15%  Similarity=0.289  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ...|.|||+|.-|...|..|+++|++|++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            347999999999999999999999999999975

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.21  E-value=0.04  Score=55.51  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=34.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            799999999999999999999999999999988755

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.18  E-value=0.038  Score=53.97  Aligned_cols=35  Identities=9%  Similarity=0.004  Sum_probs=32.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~   57 (407)
                      -+|+|||+|.+|+-.|..|++.|.+ |+++++++.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4699999999999999999999999 9999998765

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.18  E-value=0.041  Score=54.49  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  236 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG  236 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc
Confidence            46999999999999999999999999999999988653

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.16  E-value=0.046  Score=48.20  Aligned_cols=37  Identities=14%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             CCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           19 EPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        19 ~~~~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+....|+|.|| |.-|...|..|.++|++|.++.++.
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            344567999998 9999999999999999999998864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.08  E-value=0.045  Score=50.50  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            369999999999999999999999999998864

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=94.04  E-value=0.062  Score=54.26  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=39.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+.+|||||||||++||++|+.|+++|++|+|||+++..||...
T Consensus        15 ~~~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~   58 (561)
T 3da1_A           15 SEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS   58 (561)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence            34579999999999999999999999999999999988777553

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=94.03  E-value=0.045  Score=50.60  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~  191 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM  191 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC
Confidence            369999999999999999999999999999988764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.03  E-value=0.057  Score=46.99  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|.|||+|..|...|..|+++|++|.+++++..
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999999999999999998765

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.01  E-value=0.034  Score=54.46  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=32.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~   57 (407)
                      ...|+|||+|.+|+-+|..|++.  |.+|+++++++.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            35799999999999999999999  9999999998764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=94.01  E-value=0.054  Score=53.01  Aligned_cols=38  Identities=16%  Similarity=-0.001  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc
Confidence            46999999999999999999999999999999987654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.99  E-value=0.05  Score=53.68  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  224 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR  224 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc
Confidence            4799999999999999999999999999999988653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.96  E-value=0.051  Score=50.64  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|.+.|..|+++|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            369999999999999999999999999999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=93.96  E-value=0.08  Score=52.01  Aligned_cols=39  Identities=15%  Similarity=0.107  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++....
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  211 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL  211 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC
Confidence            469999999999999999999999999999999876543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.96  E-value=0.055  Score=49.27  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||+|..|...|..|+++|++|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.94  E-value=0.053  Score=53.45  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-CC-eEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~-G~-~VlvlE~~~~   56 (407)
                      ..|.|||+|.-|+..|..|+++ |+ +|+++|.+..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999999876

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=93.90  E-value=0.13  Score=45.37  Aligned_cols=51  Identities=18%  Similarity=0.064  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHhc-CcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.++.. |.+++ +++|++|..+  ++++++|++.+|++++||.||.
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~--~~~v~~v~~~~g~~i~a~~VV~  119 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLE--GNRVVGVRTWEGPPARGEKVVL  119 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEE--TTEEEEEEETTSCCEECSEEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEe--CCEEEEEEECCCCEEECCEEEE
Confidence            35667777777776 88887 6799999886  6777788888898999999994

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=93.87  E-value=0.054  Score=50.03  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|.|||+|.-|...|..|+++|++|++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.84  E-value=0.053  Score=50.24  Aligned_cols=37  Identities=22%  Similarity=0.168  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++-.
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            4699999999999999999999999999999988754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.79  E-value=0.051  Score=50.41  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|--|.+.|..|+++|++|+++.++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            369999999999999999999999999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.78  E-value=0.058  Score=52.74  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=32.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ...+.|||+|.-|+..|..|+++|++|++++++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46799999999999999999999999999998865

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.73  E-value=0.05  Score=50.75  Aligned_cols=40  Identities=15%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEEccCC
Q 015413           16 PPIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNP   55 (407)
Q Consensus        16 ~~~~~~~~DVvVIGaGl~GL~aA~~La~~G----~~VlvlE~~~   55 (407)
                      ++++|....|.|||+|.-|...|..|+++|    ++|++++++.
T Consensus        16 ~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           16 ENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             ------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             chhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            445566668999999999999999999999    8999999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=93.70  E-value=0.059  Score=53.85  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc
Confidence            57999999999999999999999999999999987653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.67  E-value=0.056  Score=52.96  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            369999999999999999999999999999874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.66  E-value=0.039  Score=53.94  Aligned_cols=36  Identities=19%  Similarity=0.142  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ..|.|||.|.+|+++|..|++.|++|++.|.+...=
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~   41 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence            359999999999999999999999999999987653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=93.65  E-value=0.059  Score=50.72  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++++.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            3699999999999999999999999999999987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.55  E-value=0.066  Score=52.73  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4699999999999999999999999999999998765

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=93.50  E-value=0.17  Score=50.16  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~---~G~~VlvlE~~~~   56 (407)
                      +||||||||++|+++|+.|++   +|.+|+|+|+++.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            799999999999999999999   9999999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.49  E-value=0.071  Score=52.43  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3469999999999999999999999999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.47  E-value=0.15  Score=48.07  Aligned_cols=41  Identities=32%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ++||||||||++||++|+.|+++|++|+|||+++..+|...
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~   42 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGS   42 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCC
Confidence            48999999999999999999999999999999988766543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.44  E-value=0.04  Score=48.33  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEE-EccCC
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNP   55 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~Vlv-lE~~~   55 (407)
                      .|.+..|.|||+|.-|...|..|+++|++|++ .+++.
T Consensus        20 ~m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           20 FQSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             GGGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             hhcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            34456899999999999999999999999999 77754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.43  E-value=0.077  Score=53.82  Aligned_cols=38  Identities=16%  Similarity=0.073  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            36999999999999999999999999999999987664

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.42  E-value=0.065  Score=49.32  Aligned_cols=35  Identities=17%  Similarity=0.045  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ...|.|||.|.-|...|..|+++|++|++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35799999999999999999999999999998764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.37  E-value=0.069  Score=52.98  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  220 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY  220 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc
Confidence            46999999999999999999999999999999987653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.37  E-value=0.1  Score=48.00  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|.||| +|.-|.+.|..|+++|++|.+++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            3699999 999999999999999999999998753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.37  E-value=0.15  Score=48.39  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ++||||||||++||++|+.|+++|++|+|||+++..+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            5899999999999999999999999999999988766

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.34  E-value=0.07  Score=52.76  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3469999999999999999999999999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=93.32  E-value=0.057  Score=54.01  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++.+++.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            479999999999999999999999999999998875

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.32  E-value=0.066  Score=52.24  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|..|+..|..|+++|++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999863

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.29  E-value=0.063  Score=54.59  Aligned_cols=31  Identities=16%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .|+|||+|..|+-+|..|++.|.+|++++++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            6999999999999999999999999999987

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.29  E-value=0.081  Score=46.51  Aligned_cols=34  Identities=15%  Similarity=0.246  Sum_probs=31.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      +...|+|||+|-.|...|..|.++|.+|+|++.+
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4567999999999999999999999999999874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=93.26  E-value=0.17  Score=50.76  Aligned_cols=44  Identities=9%  Similarity=0.159  Sum_probs=34.8

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhh---CCCeEEEEccCCC
Q 015413           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (407)
Q Consensus        13 ~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~---~G~~VlvlE~~~~   56 (407)
                      |+...+.+..+||||||||++|+++|+.|++   .|.+|+|+|+.+.
T Consensus        16 ~~~~~M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           16 PRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             -----CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             cCCcccCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            3333333457899999999999999999999   9999999999753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.19  E-value=0.084  Score=46.10  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...+.|||+|..|...|..|+++|++|.+++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999998763

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=93.19  E-value=0.17  Score=49.45  Aligned_cols=52  Identities=17%  Similarity=0.142  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+...|++|++++.|++|..+  ++++++|++.   +|+  +++||.||.
T Consensus       100 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad~VV~  156 (453)
T 3atr_A          100 PLYNQRVLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSKVVVE  156 (453)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcCEEEE
Confidence            357788888888899999999999999986  6777667654   676  799999993

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.14  E-value=0.097  Score=48.67  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 015413           18 IEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (407)
Q Consensus        18 ~~~~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (407)
                      ++|....|.|||+|..|...|..|+++|+ .|.++|.+
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34555689999999999999999999999 99999997

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.13  E-value=0.084  Score=50.67  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|+|||+|..|+.+|..|...|.+|+++|.+..
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4799999999999999999999999999998863

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.03  E-value=0.082  Score=51.33  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|.|||+|.-|+..|..|++ |++|+++|.+..
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            579999999999999999998 999999998743

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=93.03  E-value=0.086  Score=48.39  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            4699999999999999999999999999999988765

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.01  E-value=0.054  Score=49.24  Aligned_cols=35  Identities=14%  Similarity=0.160  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +...|+|||+|-.|+..|..|.+.|.+|+|++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            34579999999999999999999999999999864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=92.96  E-value=0.091  Score=48.30  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +..|.|||+|+.|...|..|+ +|++|+++|++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            457999999999999999999 999999999865

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.95  E-value=0.089  Score=51.65  Aligned_cols=35  Identities=23%  Similarity=0.128  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~   57 (407)
                      -+|+|||+|..|+-+|..|.+.|. +|++++++++.
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            479999999999999999999997 59999998875

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=92.91  E-value=0.21  Score=50.60  Aligned_cols=53  Identities=19%  Similarity=0.274  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC------C---------cEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------G---------QDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~------G---------~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+++.|++|+++++|++|..+ +++++++|++.+      |         .+++||.||.
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~-~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~  211 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFH-EDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIF  211 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEC-TTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEE
Confidence            477788888888899999999999999986 356777887753      3         6899999994

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.89  E-value=0.069  Score=50.67  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|.-|...|..|+++|++|++++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999998763

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.87  E-value=0.11  Score=48.46  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+..|+ +|.++|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            479999999999999999999998 999999874

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=92.85  E-value=0.11  Score=48.06  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ...|.|||+|.-|...|..|+++|++|++++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            35799999999999999999999999999998643

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=92.85  E-value=0.16  Score=48.84  Aligned_cols=53  Identities=15%  Similarity=0.180  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+++.|++|+.+++|++|..+ +++..+.|++.+|+  +++||.||.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFF-GTDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCEEEEEcCEEEE
Confidence            466778888888889999999999999986 24434566667888  699999993

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=92.83  E-value=0.15  Score=48.75  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHhc-CcEEEeCCceeEEEEecCCCcEE-EEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYK-GVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~-gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+.+. |++|+++++|++|..+  ++.++ .|++.+|++++||.||.
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRD--ERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEEC--TTSCEEEEEETTSCEEEEEEEEE
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEc--CCceEEEEEECCCCEEECCEEEE
Confidence            46777888887777 8999999999999886  44443 67788898999999993

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.81  E-value=0.099  Score=48.95  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..+.|||+|--|...|..|+++|++|++++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            57999999999999999999999999999885

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.77  E-value=0.096  Score=48.71  Aligned_cols=33  Identities=15%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|.|||+|--|...|..|+++|++|+++ ++.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            356999999999999999999999999999 654

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=92.76  E-value=0.05  Score=48.12  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..|.|||+|+-|.+.|..|+++|++|+.++++
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            47999999999999999999999999999885

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=92.76  E-value=0.19  Score=50.76  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++||||||||++|+++|+.|+++|++|+|||+++..+|.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~Gt   70 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGT   70 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            4699999999999999999999999999999999866663

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.76  E-value=0.1  Score=48.57  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|+ +|.++|.+.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            479999999999999999999998 999999875

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.74  E-value=0.1  Score=47.77  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=33.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            46999999999999999999999999999999887

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.73  E-value=0.067  Score=52.57  Aligned_cols=33  Identities=12%  Similarity=0.352  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|||+|+|-.|...|..|++.|++|+|+|++.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            469999999999999999999999999999874

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.73  E-value=0.25  Score=48.52  Aligned_cols=38  Identities=13%  Similarity=0.060  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~G   58 (407)
                      .+.||||||||++||+||..|++.  |++|+|+|+++.+|
T Consensus         2 ~~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            2 SLKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             --CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            357999999999999999999999  99999999999976

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.69  E-value=0.11  Score=48.30  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      ..|+|||+|..|...|..|+++|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            469999999999999999999999  999999874

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=92.67  E-value=0.11  Score=48.34  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|++|++++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            479999999999999999999999999999874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.66  E-value=0.13  Score=47.70  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|+++|+  +|.+++++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            579999999999999999999999  999999875

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=92.64  E-value=0.11  Score=47.88  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+++++++++.+
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~  191 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA  191 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc
Confidence            4699999999999999999999999999999988743

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=92.61  E-value=0.26  Score=48.71  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEc--------cCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE--------~~~~~GG~~~t   63 (407)
                      .+|||||||||.+|++||..|++ .|++|+|+|        +++.+||.+..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            46999999999999999999999 999999999        47789997643

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.61  E-value=0.071  Score=48.99  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|--|.+.|..|+++|++|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            369999999999999999999999999999873

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.59  E-value=0.12  Score=46.94  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|+|.|||.-|...+..|.++|++|.++.++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999988754

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.54  E-value=0.11  Score=47.44  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999998754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=92.53  E-value=0.28  Score=48.52  Aligned_cols=43  Identities=33%  Similarity=0.364  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEc--------cCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE--------~~~~~GG~~~t   63 (407)
                      .+|||||||||.+|++||..|++ .|++|+|+|        +++.+||.+..
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~   57 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVN   57 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHH
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeec
Confidence            46999999999999999999999 999999999        47789997643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.45  E-value=0.12  Score=50.94  Aligned_cols=34  Identities=9%  Similarity=-0.023  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++++...
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP  219 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc
Confidence            3699999999999999999999999999998653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.43  E-value=0.088  Score=50.09  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999874

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.35  E-value=0.11  Score=51.27  Aligned_cols=36  Identities=11%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .|++.+|.|||+|.-|...|..|+++|++|.+++++
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            356678999999999999999999999999999886

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.35  E-value=0.29  Score=48.20  Aligned_cols=42  Identities=31%  Similarity=0.296  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .+|||||||||.+||+||..|++.|++|+|+|+ +.+||.+..
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            369999999999999999999999999999999 789997653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=92.34  E-value=0.13  Score=51.31  Aligned_cols=31  Identities=13%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .++|||+|..|+-.|..|++.|.+|++++++
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            5999999999999999999999999999985

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.31  E-value=0.12  Score=51.20  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~   54 (407)
                      ..|.|||+|..|+..|..|+++  |++|+++|++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            4799999999999999999999  7999999975

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.23  E-value=0.11  Score=51.22  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|+..|..|+++  |++|++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  89999999863

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=92.23  E-value=0.36  Score=47.68  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~G   58 (407)
                      +..+||||||||++|++||..|+++  |.+|+|+|++++++
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4579999999999999999999887  89999999998775

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.22  E-value=0.095  Score=47.87  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            589999999999999999999999999998754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=92.22  E-value=0.15  Score=47.14  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||.|.-|...|..|+++|++|++++++.
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999998875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.18  E-value=0.074  Score=43.08  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|||+|..|...|..|++.|.+|++++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            469999999999999999999999999998763

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.16  E-value=0.12  Score=50.22  Aligned_cols=34  Identities=29%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -..-|||.|.-|+..|..|+++|++|+++|.+..
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3578999999999999999999999999998754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.08  E-value=0.15  Score=47.62  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ..|.|||||..|...|..|+++|+ +|.++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999999 999999875

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.07  E-value=0.14  Score=44.16  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.4

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.||| +|..|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            489999 99999999999999999999998763

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=92.05  E-value=0.12  Score=50.63  Aligned_cols=35  Identities=11%  Similarity=0.035  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHh--------------------hCCC-eEEEEccCCCC
Q 015413           23 FDLIVIGTGLPESVISAAAS--------------------ASGK-SVLHLDPNPFY   57 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La--------------------~~G~-~VlvlE~~~~~   57 (407)
                      -.|+|||+|..|+-+|..|+                    +.|. +|+|+++++.+
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            47999999999999999999                    6787 79999998765

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.00  E-value=0.16  Score=47.42  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~-aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            36899999999996 78889999999999999865

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.00  E-value=0.12  Score=49.78  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|..|+..|..|++ |++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999864

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.97  E-value=0.15  Score=50.33  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=32.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+.+|.|||.|.-|...|..|+++|++|++++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34579999999999999999999999999999875

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.96  E-value=0.15  Score=47.16  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      .|.|||+|..|...|..|+.+|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            58999999999999999999999  999999874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=91.96  E-value=0.11  Score=48.37  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~   53 (407)
                      .|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            489999999999999999999999999998

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.95  E-value=0.13  Score=49.62  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|||||.|-.|...|..|.+.|++|+++|.+..
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            3699999999999999999999999999998753

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=91.95  E-value=0.14  Score=46.34  Aligned_cols=33  Identities=9%  Similarity=-0.088  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|+|||+|..|+-+|..|++.| +|+++++++.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            47999999999999999999999 9999998776

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=91.93  E-value=0.19  Score=52.34  Aligned_cols=33  Identities=30%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999875

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=91.93  E-value=0.088  Score=49.60  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G-------~~VlvlE~~~~   56 (407)
                      ...|.|||+|.-|...|..|+++|       ++|.+++++..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            357999999999999999999999       99999998765

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=91.81  E-value=0.41  Score=39.86  Aligned_cols=50  Identities=20%  Similarity=0.074  Sum_probs=40.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .++.+.+.+.++..|.+++++ +|++|..+  ++. +.|++.+| +++||.||..
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~--~~~-~~v~~~~g-~i~ad~vI~A  105 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM--GGV-FEVETEEG-VEKAERLLLC  105 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC--SSS-EEEECSSC-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc--CCE-EEEEECCC-EEEECEEEEC
Confidence            467777888888899999999 99999875  343 57777777 8999999953

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=91.80  E-value=0.22  Score=50.47  Aligned_cols=52  Identities=13%  Similarity=0.104  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC-CC--cEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SG--QDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G--~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.++..|++++.+++|++|..+  ++..++|++. +|  ++++||.||.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~~G~~~~i~AdlVV~  182 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRRGGESVTVESDFVID  182 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEETTEEEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEecCCceEEEEcCEEEE
Confidence            467788888888899999999999999875  4555788876 66  5799999993

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=91.74  E-value=0.34  Score=48.44  Aligned_cols=38  Identities=5%  Similarity=0.161  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh---CCCeEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~---~G~~VlvlE~~~~~   57 (407)
                      +..+||||||||++||++|+.|++   .|.+|+|||+.+..
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            346899999999999999999999   99999999997643

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=91.70  E-value=0.11  Score=47.92  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=29.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-----C-CeEEEEcc
Q 015413           23 FDLIVIGTGLPESVISAAASAS-----G-KSVLHLDP   53 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~-----G-~~VlvlE~   53 (407)
                      ..|.|||+|.-|...|..|+++     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999999     9 99999986

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=91.68  E-value=0.32  Score=47.53  Aligned_cols=41  Identities=32%  Similarity=0.339  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+|||||||||.+||+||..|++.|++|+|+|+ +.+||.+.
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            369999999999999999999999999999999 78999664

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=91.65  E-value=0.34  Score=47.96  Aligned_cols=40  Identities=38%  Similarity=0.464  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      |+++||||||||++|+++|+.|+++|++|+|||+++..+|
T Consensus         1 M~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            1 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            3569999999999999999999999999999999875444

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.63  E-value=0.16  Score=46.91  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|--|.+.|..|+ +|++|+++.++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            36999999999999999999 999999999875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=91.62  E-value=0.16  Score=46.45  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|++|.+++++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999998764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=91.61  E-value=0.19  Score=49.59  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            369999999999999999999999999999854

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=91.58  E-value=0.35  Score=48.04  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe--CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~--~~G~--~i~Ad~VI~  332 (407)
                      ..+.+.|.+.+++.|++|+++++|++|..+  ++++++|++  .+|+  +++||.||.
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence            467778888888899999999999999987  677666654  4574  799999993

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=91.43  E-value=0.22  Score=46.17  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413            8 SELPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus         8 ~~~~~~~~~~~~~~~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +|-+-+..++.......|+|.|| |.-|...+..|+++|++|.++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A            6 HHHHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             --------CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             cccccccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            33333344444444457999997 9999999999999999999998854

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.38  E-value=0.2  Score=46.65  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      |+...|.|||+|..|.+.|..|+..|+ +|.++|.+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            445689999999999999999999999 999999875

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=91.38  E-value=0.47  Score=47.23  Aligned_cols=36  Identities=11%  Similarity=0.255  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhh------------CCCeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASA------------SGKSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~------------~G~~VlvlE~~~~   56 (407)
                      ..+||||||||++||++|+.|++            +|.+|+|+|+++.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            35899999999999999999999            9999999999764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.38  E-value=0.19  Score=47.14  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||.|+-|.+.|..|+++|++|.+++++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            359999999999999999999999999999875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=91.36  E-value=0.16  Score=45.58  Aligned_cols=35  Identities=14%  Similarity=0.251  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC----CeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G----~~VlvlE~~~~   56 (407)
                      ...|.|||+|.-|...|..|+++|    ++|.+++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            347999999999999999999999    79999998765

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.29  E-value=0.29  Score=44.80  Aligned_cols=36  Identities=19%  Similarity=0.074  Sum_probs=29.8

Q ss_pred             CCcccEEEECCC---hhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGTG---LPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaG---l~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ++..-|+|.||+   --|...|..|+++|.+|+++.++.
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            334458999985   678999999999999999998874

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=91.27  E-value=0.4  Score=48.55  Aligned_cols=41  Identities=29%  Similarity=0.264  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|++||+||+.|+++|.+|+||||+...||..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s   46 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            46899999999999999999999999999999998876643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.22  E-value=0.2  Score=46.38  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~   55 (407)
                      .|.|||+|..|...|..|+++  |++|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999985  79999999975

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.21  E-value=0.17  Score=46.98  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|+++| ++|++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46999999999999999999999 9999999985

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=91.18  E-value=0.11  Score=50.03  Aligned_cols=58  Identities=16%  Similarity=0.088  Sum_probs=40.5

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCcee---------EEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVI---------SLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~---------~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.+..|.   ..+.++|.+.+++.|++++++++|+         +|..+  ++++ +|++.+| +++||.||.
T Consensus       161 ~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~--~~~v-~v~~~~g-~i~a~~VV~  230 (405)
T 3c4n_A          161 RVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT--NTHQ-IVVHETR-QIRAGVIIV  230 (405)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCE-EEEEEEEEE
T ss_pred             EEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee--CCeE-EEEECCc-EEECCEEEE
Confidence            33444442   5688999999989999999999999         88765  5554 7776555 899999994

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=91.17  E-value=0.21  Score=50.12  Aligned_cols=36  Identities=14%  Similarity=0.008  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.++|||+|..|+=.|..+++-|.+|+|+++...+-
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~  259 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR  259 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc
Confidence            469999999999999999999999999999866553

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.09  E-value=0.19  Score=48.37  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999999999999999999999999999874

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.04  E-value=0.21  Score=49.24  Aligned_cols=35  Identities=11%  Similarity=0.157  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      |+..+|.|||+|.-|...|..|+++|++|.+++++
T Consensus         3 m~~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             CTTBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            33468999999999999999999999999999886

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.90  E-value=0.18  Score=48.46  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=27.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh-CCCeEEEEc
Q 015413           23 FDLIVIGTGLPESVISAAASA-SGKSVLHLD   52 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE   52 (407)
                      ..|.|||+|.-|...|..|++ +|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            369999999999999999998 599999998

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=90.90  E-value=0.28  Score=44.42  Aligned_cols=32  Identities=13%  Similarity=0.149  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..|+|+|+|-.|..+|..|++.|.+|+++.++
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            46999999999999999999999999999876

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=90.89  E-value=0.21  Score=47.55  Aligned_cols=36  Identities=22%  Similarity=0.219  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ..+..|||+|||-+|..+|..|...|. +|+++|++.
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            345689999999999999999999998 999999984

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=90.86  E-value=0.52  Score=48.42  Aligned_cols=41  Identities=32%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||+|++||+||+.|+++|.+|+||||....||.+
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            46899999999999999999999999999999998776544

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.86  E-value=0.26  Score=45.90  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      |+...|.|||+|..|.+.|..|+..|. +|.++|.+.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            344679999999999999999999998 999999875

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.85  E-value=0.22  Score=46.96  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|+|||+|..|..+|..+.+.|++|+++|.+..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            589999999999999999999999999998753

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=90.81  E-value=0.18  Score=52.62  Aligned_cols=36  Identities=8%  Similarity=0.153  Sum_probs=33.0

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIG--aGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||  +|..|+-+|..|++.|.+|+++++.+ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            3799998  99999999999999999999999998 654

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.76  E-value=0.23  Score=44.91  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999999999999999999998764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=90.76  E-value=0.54  Score=45.14  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             eEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecC--CCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~--~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+|..-..++.+.|.+.++..|++|+++++|++|..+.+  +++ +.|++.+| +++||+||+
T Consensus       101 ~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A          101 QLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             EEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence            3456555678889999999999999999999999986410  233 57776666 799999994

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=90.74  E-value=0.27  Score=46.76  Aligned_cols=53  Identities=13%  Similarity=0.144  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe-CCCc--EEEcCEEE-EC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLV-LD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~-~~G~--~i~Ad~VI-~~  333 (407)
                      ..+.+.|.+.+...|++|+++++|++|..+ +++. +.|++ .+|+  +++||.|| ++
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~~v~~~~~g~~~~~~a~~vV~Ad  159 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDL-QGER-PYVTFERDGERLRLDCDYIAGCD  159 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECT-TSSS-CEEEEEETTEEEEEECSEEEECC
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEe-cCCc-eEEEEecCCcEEEEEeCEEEECC
Confidence            466777888888889999999999999874 1233 45666 6887  79999999 44

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=90.73  E-value=0.5  Score=48.06  Aligned_cols=51  Identities=12%  Similarity=0.188  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.++. .|.+| +++.|+.|..+  ++++++|.+.+|++++||.||+
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e--~g~V~GV~t~dG~~i~AdaVVL  174 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVK--NNQVVGVRTNLGVEYKTKAVVV  174 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEES--SSBEEEEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEec--CCEEEEEEECCCcEEEeCEEEE
Confidence            4577888888777 58888 68899999886  7788899999999999999995

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=90.72  E-value=0.12  Score=55.64  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+++++..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            3699999999999999999999999999999998754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.72  E-value=0.22  Score=47.54  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.59  E-value=0.12  Score=45.48  Aligned_cols=32  Identities=6%  Similarity=-0.030  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..++|+|+|..|...|..|.+.|+ |+++|++.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            369999999999999999999999 99999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=90.58  E-value=0.44  Score=48.61  Aligned_cols=41  Identities=22%  Similarity=0.169  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .++||||||||++||+||+.|+++|.+|+||||....||.+
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s   57 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT   57 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            46899999999999999999999999999999988776643

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=90.56  E-value=0.21  Score=44.75  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (407)
                      .|.|||+|.-|...|..|+++| ++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            4899999999999999999999 9999998863

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=90.45  E-value=0.49  Score=46.86  Aligned_cols=52  Identities=19%  Similarity=0.111  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc---EEEcCEEE-EC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ---DILSHKLV-LD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~---~i~Ad~VI-~~  333 (407)
                      ..+-+.|.+.+++.|++|+++++|++|+++  ++. +.|++.++.   +++||.|| ++
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~~~a~~vVgAD  161 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDD--GAG-VTVEVRGPEGKHTLRAAYLVGCD  161 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEE--TTE-EEEEEEETTEEEEEEESEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEc--CCe-EEEEEEcCCCCEEEEeCEEEECC
Confidence            356677778888889999999999999987  444 357666664   79999999 54

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.44  E-value=0.26  Score=44.82  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC---eEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK---SVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~---~VlvlE~~~   55 (407)
                      ...|.|||+|.-|...|..|+++|+   +|.+.+++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            3569999999999999999999999   999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.43  E-value=0.24  Score=47.09  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|+|+|-.|+.+|..|+..|.+|++++++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.42  E-value=0.24  Score=46.92  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -.|+|+|+|-.|+.++..|...|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.40  E-value=0.33  Score=50.43  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      --.|.|||||..|.-.|..++.+|++|+++|.+..
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            45799999999999999999999999999998753

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.31  E-value=0.25  Score=46.91  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (407)
                      ++..|+|+|||-+|..+|..|...|. +|+++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45689999999999999999999998 89999997

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=90.30  E-value=0.22  Score=54.07  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (407)
                      +|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            79999999999999999999996 9999999874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=90.26  E-value=0.29  Score=45.31  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ..|.|||||..|...|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            369999999999999999999997 999999864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=90.23  E-value=0.26  Score=45.02  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48999999999999999999999999998864

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=90.15  E-value=0.23  Score=46.19  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      .|.|||+|..|...|..|+++|+  +|.++|.+.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999863

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=90.08  E-value=0.27  Score=45.80  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        22 ~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ...|+|.|| |.-|...+..|.++|++|.++.++..-
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            456999998 999999999999999999999987643

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=90.07  E-value=0.29  Score=46.68  Aligned_cols=40  Identities=23%  Similarity=0.254  Sum_probs=35.2

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCC---eEEEEccCC-CCCCcc
Q 015413           22 AFDLIVIGT-GLPESVISAAASASGK---SVLHLDPNP-FYGSHF   61 (407)
Q Consensus        22 ~~DVvVIGa-Gl~GL~aA~~La~~G~---~VlvlE~~~-~~GG~~   61 (407)
                      ...|+|||+ |..|+.|+..+..-|.   +|+++|.+. .-||+.
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~  258 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPF  258 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCch
Confidence            457999999 9999999999999997   999999986 457763

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=90.07  E-value=0.53  Score=42.89  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           10 LPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        10 ~~~~~~~~~~~~~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ++-|..+...+...-|+|.|| |--|...|..|+++|++|+++.++.
T Consensus        14 ~~~~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           14 LQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             CCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            444444444444455888875 6789999999999999999998764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=90.04  E-value=0.28  Score=44.67  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.4

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+ |.-|...|..|+++|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36999999 9999999999999999999998764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=89.98  E-value=0.35  Score=41.04  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=29.9

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|+|| |.-|...+..|.++|++|.++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            35999998 9999999999999999999998864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=89.97  E-value=0.54  Score=46.52  Aligned_cols=52  Identities=13%  Similarity=0.114  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc---EEEcCEEE-EC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ---DILSHKLV-LD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~---~i~Ad~VI-~~  333 (407)
                      ..+-+.|.+.+++.|++|+++++|++|+.+  ++. +.|++.++.   +++||.|| ++
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~~~a~~vVgAD  162 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDE--GDH-VVVEVEGPDGPRSLTTRYVVGCD  162 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEEC--SSC-EEEEEECSSCEEEEEEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCE-EEEEEEcCCCcEEEEeCEEEEcc
Confidence            356677778888889999999999999986  444 357766765   79999999 54

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=89.97  E-value=0.27  Score=44.90  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            369999999999999999999999999998864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=89.92  E-value=0.29  Score=45.65  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~   54 (407)
                      ...|.|||+|..|.+.|..|+..|.  +|.++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            3579999999999999999999997  89999985

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=89.92  E-value=0.31  Score=45.32  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=30.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      ...|.|||+|..|.+.|..|+..|.  .|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999998  999999874

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=89.86  E-value=0.28  Score=48.56  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=89.84  E-value=0.25  Score=45.62  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~   55 (407)
                      .|.|||+|..|...|..|+++|  .+|.++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  7999999864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.83  E-value=0.31  Score=44.13  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      .|.|||+|.-|...|..|+++|+  +|++++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            58999999999999999999999  999998864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=89.79  E-value=0.25  Score=51.13  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.3

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIG--aGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -+|+|||  +|..|+-+|..|++.|.+|+++++.+++....
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~  564 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT  564 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc
Confidence            3599999  99999999999999999999999999887654

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=89.76  E-value=0.3  Score=48.21  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999998863

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=89.74  E-value=0.34  Score=41.67  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.1

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|+|+|| |.-|...+..|.++|++|.++.++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4899995 9999999999999999999998864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.71  E-value=0.27  Score=43.97  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ...|+|||+|=.|..+|..|+++|. +++++|...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3579999999999999999999996 899999853

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=89.70  E-value=0.32  Score=43.48  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|++.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            469999999999999999999999999999864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.69  E-value=0.29  Score=44.12  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|.|||.-|...+..|.++|++|.++.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            369999999999999999999999999998764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=89.65  E-value=0.22  Score=47.37  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-------CeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G-------~~VlvlE~~~~   56 (407)
                      .|.|||+|.-|...|..|+++|       ++|++++++..
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998765

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=89.62  E-value=0.26  Score=51.24  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            359999999999999999999999999999875

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=89.61  E-value=0.31  Score=45.18  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             cccEEEECCC-hhHHHHHHHHhhCCCeEEEEccC--------CCCCCcccc
Q 015413           22 AFDLIVIGTG-LPESVISAAASASGKSVLHLDPN--------PFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaG-l~GL~aA~~La~~G~~VlvlE~~--------~~~GG~~~t   63 (407)
                      ...|+|||+| +.|..+|..|...|.+|++++++        ..+++..++
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~  227 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHH  227 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCE
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhccc
Confidence            4579999999 67999999999999999988654        555654443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=89.51  E-value=0.3  Score=48.11  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999998863

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=89.50  E-value=0.32  Score=48.71  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            4699999999999999999999999999998654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=89.49  E-value=0.24  Score=44.92  Aligned_cols=33  Identities=6%  Similarity=0.139  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..++|+|+|-.|..+|..|++.|.+|+|+.++.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999998763

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.49  E-value=0.29  Score=47.94  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=31.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      +...|+|||+|-.|...|..|.++|.+|+|++.+
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            3457999999999999999999999999999975

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=89.40  E-value=0.66  Score=42.04  Aligned_cols=52  Identities=8%  Similarity=0.052  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEEeC---------CC-----cEEEcCEEEE
Q 015413          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLA---------SG-----QDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---------~G-----~~i~Ad~VI~  332 (407)
                      .++.+.|.+.+.+ .|.++++++.|++|..+  ++++.+|.+.         +|     .+++||.||.
T Consensus       119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~--~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~  185 (284)
T 1rp0_A          119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVS  185 (284)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEE--TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEcCcEEEEEEec--CCeEEEEEEeccccccccCccccCceEEEECCEEEE
Confidence            4666777776665 69999999999999986  6777777653         32     5799999994

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=89.37  E-value=0.6  Score=47.64  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+.+.|.+.++. .|.+| +++.|+.|..+  ++++++|.+.+|.+++||.||+
T Consensus       124 ~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e--~g~V~GV~t~dG~~I~Ad~VVL  175 (651)
T 3ces_A          124 VLYRQAVRTALENQPNLMI-FQQAVEDLIVE--NDRVVGAVTQMGLKFRAKAVVL  175 (651)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EECCEEEEEES--SSBEEEEEETTSEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEEEEEEEEec--CCEEEEEEECCCCEEECCEEEE
Confidence            3577888887777 68888 68899999886  6788899988898899999994

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.35  E-value=0.36  Score=41.66  Aligned_cols=31  Identities=32%  Similarity=0.464  Sum_probs=28.8

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .|+|.|| |.-|...+..|.++|++|.++.++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4899998 999999999999999999999876

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.29  E-value=0.39  Score=43.42  Aligned_cols=33  Identities=15%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..++|||+|-+|.++|..|++.|.+|.|+.|+.
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999997764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.28  E-value=0.33  Score=46.24  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|||+|-.|+.+|..|+..|.+|++++++.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=89.22  E-value=0.4  Score=42.61  Aligned_cols=33  Identities=12%  Similarity=0.206  Sum_probs=28.4

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -|+|.|| |--|...|..|+++|++|+++.++..
T Consensus        24 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           24 NILVLGGSGALGAEVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4788886 56799999999999999999998754

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=89.19  E-value=0.32  Score=44.08  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|.-|...|..|++ |++|.+++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            58999999999999999999 99999998864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=89.13  E-value=0.32  Score=42.16  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|.|| |.-|...+..|.++|++|.++.++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            46999995 9999999999999999999999874

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=88.98  E-value=0.31  Score=44.33  Aligned_cols=34  Identities=9%  Similarity=0.175  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~   55 (407)
                      ...|.|||+|.-|...|..|+++  |++|.+++++.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            35799999999999999999988  68999998763

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=88.90  E-value=0.34  Score=47.39  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--------------------C-CeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASAS--------------------G-KSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--------------------G-~~VlvlE~~~~~GG~   60 (407)
                      -.|+|||+|..|+-+|..|++.                    | .+|+++++++.+-..
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~  206 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAA  206 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhc
Confidence            4799999999999999999974                    6 599999999876543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=88.76  E-value=0.31  Score=44.75  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|-+||-|..|..-|..|.++|++|++++++..
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            599999999999999999999999999997653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=88.75  E-value=0.39  Score=44.98  Aligned_cols=33  Identities=18%  Similarity=0.091  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|.-|.+.|..|+++|++|++.+++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            359999999999999999999999999999875

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=88.73  E-value=0.34  Score=43.44  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4699999999999999999999999 89998763

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=88.64  E-value=0.31  Score=44.38  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|..|...|..|+++|++|.+++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            369999999999999999999999999998 54

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=88.63  E-value=0.9  Score=41.96  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=40.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+.++..|.++++++.|++|..+  ++.+.+|++.+| ++++|+||+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~~d~vV~  126 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHF--GERLRVVARDGR-QWLARAVIS  126 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEE--TTEEEEEETTSC-EEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEC--CCcEEEEEeCCC-EEEeCEEEE
Confidence            466677777788899999999999999886  555333887666 899999994

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.61  E-value=0.52  Score=43.29  Aligned_cols=32  Identities=16%  Similarity=0.129  Sum_probs=29.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (407)
                      ..|+|||+|-.|..+|..|++.|. +|+|+.++
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            469999999999999999999997 99999876

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=88.42  E-value=0.4  Score=46.82  Aligned_cols=32  Identities=16%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..|+|+|+|..|...|..|++.|++|.+++++
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~   35 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   35 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECC
Confidence            46999999999999999999999999999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=88.36  E-value=0.52  Score=42.83  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .|+|.|| |+-|...+..|.++|++|.++-|+...
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            4899998 999999999999999999999876544

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=88.33  E-value=0.53  Score=46.62  Aligned_cols=54  Identities=19%  Similarity=0.193  Sum_probs=39.3

Q ss_pred             cchHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCC-cEEEEEeC--CC-----cEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSG-SYKGVRLA--SG-----QDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g-~~~gV~~~--~G-----~~i~Ad~VI~  332 (407)
                      -.....++.+.+...| .+|++++.|++|+.+. ++ ++++|++.  +|     .+++|+.||+
T Consensus       220 r~s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~-~g~~~~gV~~~~~~g~~~~~~~v~A~~VIl  282 (504)
T 1n4w_A          220 KQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTK-DGGYALTVEQKDTDGKLLATKEISCRYLFL  282 (504)
T ss_dssp             BCCTTTTHHHHHHHTTSEEEEESEEEEEEEECT-TSSEEEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             ccCHHHHHHHHHHhcCCcEEEeCCEEEEEEECC-CCCEEEEEEEeCCCCccceeEEEeeCEEEE
Confidence            4444455555566665 8999999999999862 34 78899874  56     3589998884

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=88.30  E-value=0.38  Score=43.32  Aligned_cols=32  Identities=19%  Similarity=0.091  Sum_probs=26.3

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -|+|.|| |--|...|..|+++|.+|+++.+++
T Consensus        30 ~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~   62 (269)
T 4dmm_A           30 IALVTGASRGIGRAIALELAAAGAKVAVNYASS   62 (269)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3677776 5678999999999999999988753

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=88.24  E-value=0.72  Score=43.60  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +..|+|.|| |.-|...+..|.++|++|.++.++..
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   64 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   64 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            356999998 99999999999999999999988753

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.22  E-value=0.42  Score=44.35  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~   54 (407)
                      ....|+|||+|..|.+.|..|+..|.  .|.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999999985  89999976

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=88.21  E-value=0.64  Score=46.30  Aligned_cols=51  Identities=20%  Similarity=0.169  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCC----cEEEEEeCCC---cEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG----SYKGVRLASG---QDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g----~~~gV~~~~G---~~i~Ad~VI~  332 (407)
                      ..+-+.|.+.+++.|++|+++++|++|+.+  ++    . +.|++.++   .+++||.||.
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~~~~~-v~v~~~~~~~~~~i~a~~vV~  177 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQH--DDDAGAG-VTARLAGPDGEYDLRAGYLVG  177 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE--CGGGCSE-EEEEEEETTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEC--CCCcccc-EEEEEEcCCCeEEEEeCEEEE
Confidence            466777888888899999999999999987  33    3 45666665   6799999993

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=88.21  E-value=0.39  Score=43.55  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..|+|||+|-.|...|..|++.|.+|++++++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            46999999999999999999999999999876

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=88.19  E-value=0.46  Score=42.16  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC----eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK----SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~----~VlvlE~~~   55 (407)
                      ..|.|||+|.-|...|..|+++|+    +|.+++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            369999999999999999999998    999999874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=88.17  E-value=0.44  Score=46.76  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|+|+|+|-.|..+|..|++.|.+|++.|.+.
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3469999999999999999999999999998864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=88.08  E-value=0.47  Score=43.55  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3569999999999999999999999999999863

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=88.05  E-value=0.8  Score=46.49  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (407)
                      ..|.++|.+.+...| .+|++++.|++|..+  ++++++|..   .+|+  +++|+.||+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  191 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            467888888888888 999999999999987  677777753   5676  689999984

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=87.99  E-value=0.41  Score=42.80  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~   53 (407)
                      .|.|||+|..|...|..|+++|++|++.++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            489999999999999999999999999765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=87.96  E-value=0.5  Score=42.21  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=29.2

Q ss_pred             CcccEEEECC---ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIGT---GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGa---Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...-|+|.||   |--|...|..|+++|.+|+++.+++
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            3456899996   4678999999999999999998774

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=87.86  E-value=0.43  Score=43.51  Aligned_cols=31  Identities=6%  Similarity=0.263  Sum_probs=28.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..++|+|+|-.|..+|..|++.| +|++..++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            46999999999999999999999 99999775

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=87.63  E-value=0.78  Score=43.76  Aligned_cols=49  Identities=14%  Similarity=0.062  Sum_probs=39.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ..+-+.|.+.+..  ++|+++++|++|+.+  ++. +.|++.+|++++||.||.
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~  175 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEED--ADG-VTVWFTDGSSASGDLLIA  175 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEE
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEec--CCc-EEEEEcCCCEEeeCEEEE
Confidence            4566677766655  889999999999987  454 568888999999999993

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=87.50  E-value=0.46  Score=43.60  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      .|.|||+|..|.+.|..|++.|.  +|.++|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            58999999999999999999998  999999865

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=87.48  E-value=0.54  Score=42.19  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .++|||+|-.|...|..|.+.|.+|++++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999998763

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=87.48  E-value=0.54  Score=42.99  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ...|.|||+|-.|..+|..|+..|.+|++++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3469999999999999999999999999999864

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=87.47  E-value=0.52  Score=43.90  Aligned_cols=36  Identities=11%  Similarity=0.196  Sum_probs=30.7

Q ss_pred             CCcccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      |....|+|.|| |.-|...+..|.+.|++|.++.++.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            33457999998 9999999999999999999999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=87.46  E-value=0.56  Score=43.99  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             CcccEEEECC-ChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           21 TAFDLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGa-Gl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      ....|+|||+ |..|.++|+.|+..|.  .|.++|.+.
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            3467999998 9999999999999995  899999753

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=87.34  E-value=0.48  Score=41.50  Aligned_cols=34  Identities=9%  Similarity=0.162  Sum_probs=30.1

Q ss_pred             cccEEEEC-CChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413           22 AFDLIVIG-TGLPESVISAAASASG-KSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIG-aGl~GL~aA~~La~~G-~~VlvlE~~~   55 (407)
                      +..|+|.| +|.-|...|..|+++| ++|+++.++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~   58 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQP   58 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSG
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcCh
Confidence            35699999 6999999999999999 8999998764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=87.23  E-value=0.68  Score=43.20  Aligned_cols=34  Identities=12%  Similarity=0.097  Sum_probs=30.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~   54 (407)
                      ....|.|||+|..|.+.|..|+.+|.  .|.++|.+
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            34579999999999999999999998  89999986

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=87.12  E-value=0.5  Score=43.52  Aligned_cols=34  Identities=26%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--eEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~~   56 (407)
                      ..|.|||||..|...|..|+.+|.  .|.++|.+..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            579999999999999999999999  9999999863

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=87.08  E-value=0.82  Score=43.50  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|.|||+|-.|...|..+.+.|++|.+++.+.
T Consensus        15 k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           15 KTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            479999999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	407
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-63
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-20
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-27
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	3e-18
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	4e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	5e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  209 bits (534), Expect = 1e-63
 Identities = 85/330 (25%), Positives = 134/330 (40%), Gaps = 44/330 (13%)

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
                +D        S       D   +  +     S+++ +  R FN+D+   ++L+  
Sbjct: 177 GKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEG-RRFNIDLV-SKLLYSR 234

Query: 122 DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRF 181
              +DL++KS  S Y EFK+I        +  +  VP SRA +F  K L ++EK  LM+F
Sbjct: 235 GLLIDLLIKSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKF 293

Query: 182 FKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVS 241
                 +       E +         + F+E+L   KL   ++  VL++IAM        
Sbjct: 294 LTFCVEY-------EEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTS-- 344

Query: 242 EYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP 301
                T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  
Sbjct: 345 ----CTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHS 398

Query: 302 VISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDN 361
           V  L+ D+ S   K V    GQ I+S   +++ S+    +                    
Sbjct: 399 VQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC------------------- 439

Query: 362 KGKVARGICITRSSLKPDLSNFLVIFPPRC 391
             +V+R  C          SN  V   P  
Sbjct: 440 -SRVSR-DCYNDLP-----SNVYVCSGPDS 462

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.3 bits (226), Expect = 1e-20
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
          P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 4  PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 63

Query: 80 SSVCPDPLYSDVEI 93
          + V  +      +I
Sbjct: 64 NDVVTENSMWQEQI 77

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (269), Expect = 2e-27
 Identities = 70/316 (22%), Positives = 144/316 (45%), Gaps = 27/316 (8%)

Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +    
Sbjct: 4   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
                                    R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 64  EERESKFG---------------KDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 107

Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +    + ++ +  
Sbjct: 108 QVSGSYVFKQG-KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSY----KEDDLSTH 162

Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
              +   +   E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 163 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQP---ARPSFERILLYCQS 219

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 220 VARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-T 276

Query: 321 SGQDILSHKLVLDPSF 336
                 +  ++ DP++
Sbjct: 277 KLGTFKAPLVIADPTY 292

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.0 bits (203), Expect = 3e-18
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 33/322 (10%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +           
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQL------ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
                              +            P+ L      V ++L +  + YL+FK +
Sbjct: 61  -------------LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVV 107

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V      D      V   
Sbjct: 108 EGSFVYKGG-KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVD-- 164

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
               ++   +   K  L   +     +A+A+   D  + +  L   + INR+ LY+ S+ 
Sbjct: 165 --PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL---ETINRIKLYSESLA 219

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +       GV  + G
Sbjct: 220 RYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENG--KVVGV-KSEG 274

Query: 323 QDILSHKLVLDPSFTVPGSLAS 344
           +     +L+ DPS+ VP  +  
Sbjct: 275 EVARCKQLICDPSY-VPDRVPI 295

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 364 KVARGICITRSSLKPDLSNFLVIFPP 389
           +++R + IT  S+    ++  V    
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILT 29

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 4   NESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61
           ++SE +  +   P       D++V+G+G   +  SAA SA+  G  V+ ++  P  G + 
Sbjct: 1   DKSERQAALASAPHDT---VDVVVVGSGG--AGFSAAISATDSGAKVILIEKEPVIGGN- 54

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
           + L+   +            +   P     +       +            S   V +  
Sbjct: 55  AKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMT 114

Query: 122 DHAVDLM 128
               DL 
Sbjct: 115 AMGADLT 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	407
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.96
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.92
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.86
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.85
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.72
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.67
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.53
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.49
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.48
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.48
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.47
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.37
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.35
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.35
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.32
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.21
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.21
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.99
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.97
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.95
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.94
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.92
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.89
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.85
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.84
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.82
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.81
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.8
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.77
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.76
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.74
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.73
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.71
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.68
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.66
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.65
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.64
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.64
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.62
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.62
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.62
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.6
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.58
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.58
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.58
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.57
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.54
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.53
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.53
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.53
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.49
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.47
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.46
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.44
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.42
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.42
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.36
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.3
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.29
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.28
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.15
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.95
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.88
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.83
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.83
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.82
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.81
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.81
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.77
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.75
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.71
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	97.68
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.65
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.58
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.57
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.57
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.55
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.5
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.43
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.25
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.25
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.24
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.22
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.19
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.18
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.1
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.09
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.09
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.95
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.94
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.88
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.87
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.79
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.77
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.76
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.72
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.7
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.7
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.66
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.57
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.52
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.35
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.32
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.32
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.28
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.16
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.13
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.11
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.05
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.03
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.9
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.89
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.89
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.66
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.38
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.34
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.32
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.1
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.09
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.03
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.93
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.92
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	94.89
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.57
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.54
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.52
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.43
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.29
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.26
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.85
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.81
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.76
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.74
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.69
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.56
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.5
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.39
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.21
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.08
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.95
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.88
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.69
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.65
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.23
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.11
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.09
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.08
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.06
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.93
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.86
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.76
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.65
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	91.54
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	91.27
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.25
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.22
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.22
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.22
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	91.19
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.98
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.73
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.34
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.24
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	90.05
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.85
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.53
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.51
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.51
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	89.48
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.47
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	89.46
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.99
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	88.87
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	88.46
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.45
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.34
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.33
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.13
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.09
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.84
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	87.7
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	87.58
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.5
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	86.88
d2v5za2	112	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	86.81
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	86.72
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.39
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.33
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.78
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	85.47
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.96
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.96
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	84.83
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.65
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.63
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.35
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.33
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	84.32
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	83.8
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	83.73
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	83.31
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.2
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	82.61
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	82.39
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	82.35
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	82.06
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	81.88
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	81.82
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	81.25
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	81.16
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.89
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	80.72
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.19

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-51  Score=400.92  Aligned_cols=302  Identities=35%  Similarity=0.594  Sum_probs=249.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCC----------------
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVC----------------   83 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~----------------   83 (407)
                      +++|||||+||||..++.|++|++.|+||+++|+|++|||.+.|++++++.+|+....+.....                
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~   83 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   83 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchh
Confidence            5689999999999999999999999999999999999999999999999888886543311000                


Q ss_pred             -----CCCccccccccc---------------------------------------------------------------
Q 015413           84 -----PDPLYSDVEISN---------------------------------------------------------------   95 (407)
Q Consensus        84 -----~~~~~~~~~~~~---------------------------------------------------------------   95 (407)
                           ....+.+++..+                                                               
T Consensus        84 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  163 (491)
T d1vg0a1          84 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  163 (491)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                 000000000000                                                               


Q ss_pred             ----------------------------------------------cccccccCCCCceEEecCCCeEEeeCcHHHHHHH
Q 015413           96 ----------------------------------------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (407)
Q Consensus        96 ----------------------------------------------~~~~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~  129 (407)
                                                                    ...+.+.+..|+|++||. |+++++++.++++|.
T Consensus       164 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~-Pk~l~a~g~lv~~Li  242 (491)
T d1vg0a1         164 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLV-SKLLYSRGLLIDLLI  242 (491)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESS-CCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccc-chheecccHHHHHHH
Confidence                                                          000111234699999997 999999999999999


Q ss_pred             hcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHHHHHHHHhhcCCCccccccccccccccCCc
Q 015413          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (407)
Q Consensus       130 ~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  209 (407)
                      ++++.+|+||+.+++.|++. +|++.++|+++.++|+++.+++.+||++|+|++.+.++... +.      ......+.|
T Consensus       243 ~S~v~rYlEFk~v~~~~v~~-~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~-~~------~~~~~~~~~  314 (491)
T d1vg0a1         243 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEH-PD------EYRAYEGTT  314 (491)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGC-HH------HHHTTTTSB
T ss_pred             HcChhhheeEEEeceEEEec-CCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC-cc------ccccccCCc
Confidence            99999999999999999886 89999999999999999999999999999999999887532 11      123355789


Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHH
Q 015413          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (407)
Q Consensus       210 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~  289 (407)
                      |.+||+++++++.+++++.+++++...+      ..++.+++.+++.|+.|+++||+  .+|+||.||.++|+|+|||++
T Consensus       315 ~~e~l~~~~l~~~~~~~i~~aial~~~~------~~~~~~~l~ri~~yl~Slg~yG~--spflyp~YG~gEipQ~FcR~~  386 (491)
T d1vg0a1         315 FSEYLKTQKLTPNLQYFVLHSIAMTSET------TSCTVDGLKATKKFLQCLGRYGN--TPFLFPLYGQGELPQCFCRMC  386 (491)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CC------SCBHHHHHHHHHHHHHHTTSSSS--SSEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHhheeccCCC------CccHHHHHHHHHHHHHHHHhhCC--CCeEeecCCcchHHHHHHHHH
Confidence            9999999999999999999998885322      23567889999999999999996  469999999999999999999


Q ss_pred             HhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 015413          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (407)
Q Consensus       290 ~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (407)
                      ++.||+|+||++|++|..+.+++++.+|.+++|++++|++||++|.++.
T Consensus       387 AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p  435 (491)
T d1vg0a1         387 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLS  435 (491)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBC
T ss_pred             HhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCC
Confidence            9999999999999999997667888899889999999999999998873

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-38  Score=287.56  Aligned_cols=292  Identities=25%  Similarity=0.494  Sum_probs=219.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (407)
                      |+++|||||||||++||+||+.||++|++|+||||++++||+++|++.+++..+......+          ..     ..
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~----------~~-----~~   66 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS----------KE-----ER   66 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCC----------HH-----HH
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccc----------cc-----cc
Confidence            5678999999999999999999999999999999999999999999987643332211100          00     00


Q ss_pred             ccccCCCCceEEecCCCeEEeeCcHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHH
Q 015413           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (407)
Q Consensus        99 ~~~~~~~~~~~idl~Gp~~~~~~~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (407)
                      .........|.+|+. |+++...+.+...+.+.+...+++|..++..+++. ++....+|....+++.....+..+++.+
T Consensus        67 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (297)
T d2bcgg1          67 ESKFGKDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRM  144 (297)
T ss_dssp             HHHHCCGGGCCEESS-CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHH
T ss_pred             cccccccccceeccC-cccccCCCcceeeeeeccccccccccccCcccccc-cCCccccccchhhhhhccccccccchhh
Confidence            111123457889995 99999999999999999999999999988888765 7888999998888888777888888888


Q ss_pred             HHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcCCChhhHHHHHHHHHhccCCcchhhhhhchhhHHHHHHHHH
Q 015413          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (407)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  258 (407)
                      .+|...+..+......    ..........++.++++++++++.+++++.+.+.......-   ...++...+..+..+.
T Consensus       145 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  217 (297)
T d2bcgg1         145 KKFLEWISSYKEDDLS----THQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDY---LQQPARPSFERILLYC  217 (297)
T ss_dssp             HHHHHHHHHCBTTBGG----GSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGG---GGSBHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcccc----chhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccc---cchhhhhhhhhhhhhh
Confidence            8887766554322110    00012344578999999999999998877665433321111   1234555555666666


Q ss_pred             HhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 015413          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (407)
Q Consensus       259 ~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~  337 (407)
                      .+...+..  +++.||+||+++|+++|++.+++.|++|++|++|++|..+.+++++++|+ .+|++++||+||++|+++
T Consensus       218 ~~~~~~~~--~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~s~~  293 (297)
T d2bcgg1         218 QSVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADPTYF  293 (297)
T ss_dssp             HHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECGGGC
T ss_pred             hccccccc--CcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEChhhc
Confidence            66555443  34889999999999999999999999999999999999874456777776 689999999999999886

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-24  Score=203.11  Aligned_cols=279  Identities=13%  Similarity=0.066  Sum_probs=160.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (407)
                      ||||||||++||+||+.|+|+|++|+||||++++||++.|....+                                   
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~-----------------------------------   45 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQK-----------------------------------   45 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTT-----------------------------------
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCC-----------------------------------
Confidence            899999999999999999999999999999999999999875322                                   


Q ss_pred             CCCceEEecCCCeEEeeC-cHHHHHHHhcCcccccccccccceeeEccCCceeecCCCHHHHhhhccCChHHHHHHHHHH
Q 015413          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (407)
Q Consensus       104 ~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~  182 (407)
                         .+.+|+ |++++... ..+.+++.+.|+..+.... .... .+..+...........     .............+.
T Consensus        46 ---g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  114 (383)
T d2v5za1          46 ---VKYVDL-GGSYVGPTQNRILRLAKELGLETYKVNE-VERL-IHHVKGKSYPFRGPFP-----PVWNPITYLDHNNFW  114 (383)
T ss_dssp             ---TSCEES-SCCEECTTCHHHHHHHHHTTCCEEECCC-SSEE-EEEETTEEEEECSSSC-----CCCSHHHHHHHHHHH
T ss_pred             ---CcEEeC-CceEeCCCChHHHHHHHHcCCcceeccC-ccce-EEecCccccccccccc-----chhhhhhhhhHHHHH
Confidence               223677 58877554 3677888888875432221 1111 1111222222211100     001111111122222


Q ss_pred             HHHHhhcCCCccc-cccccccccccCCcHHHHHHhcCCChhhHHHHHHHH-HhccCCcchhhhhhchhhHHHHHHHHHHh
Q 015413          183 KLVQGHLSLDESE-ENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALYNSS  260 (407)
Q Consensus       183 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~~~~~~~s  260 (407)
                      ..+.......... ........+....++.+++++....+....+..... ........    ..+....+.....+...
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  190 (383)
T d2v5za1         115 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETH----EVSALWFLWYVKQCGGT  190 (383)
T ss_dssp             HHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTT----TSBHHHHHHHHHTTTCH
T ss_pred             HHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccc----hhhHHHHHHHHHhhccc
Confidence            2221111110000 000111233456789999998888776666443211 11111111    12222222211111000


Q ss_pred             hcccc-CCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCC
Q 015413          261 IGRFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTV  338 (407)
Q Consensus       261 ~~~~~-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~  338 (407)
                      ..... ...+....+.+|++.++++++   +..|++|++|++|++|..+  +++ +.|++.||++++||+||+ .|..++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~g~~i~~~~~v~~I~~~--~~~-v~v~~~~g~~~~ad~vI~a~p~~~~  264 (383)
T d2v5za1         191 TRIISTTNGGQERKFVGGSGQVSERIM---DLLGDRVKLERPVIYIDQT--REN-VLVETLNHEMYEAKYVISAIPPTLG  264 (383)
T ss_dssp             HHHHCSTTSTTSEEETTCTHHHHHHHH---HHHGGGEEESCCEEEEECS--SSS-EEEEETTSCEEEESEEEECSCGGGG
T ss_pred             ccccccccCcceeeeccchhHHHHHHH---HHcCCeEEecCcceEEEec--CCe-EEEEECCCCEEECCEEEECCCHHHH
Confidence            00000 111235678999999998775   4679999999999999876  555 468889999999999995 465666


Q ss_pred             CCCCccchhhhhhhhhhhcccC
Q 015413          339 PGSLASSHQQLQESFQAFSLSD  360 (407)
Q Consensus       339 ~~~~~~~~p~lp~~~~~~~~~~  360 (407)
                      .++  .|+|+||..+.+..++.
T Consensus       265 ~~~--~~~p~l~~~~~~~~~~~  284 (383)
T d2v5za1         265 MKI--HFNPPLPMMRNQMITRV  284 (383)
T ss_dssp             GGS--EEESCCCHHHHHHTTSC
T ss_pred             hhC--ccCCCCCHHHHHHHHHh
Confidence            664  47899998777665543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.86  E-value=4.5e-21  Score=177.29  Aligned_cols=77  Identities=13%  Similarity=0.290  Sum_probs=61.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (407)
                      .||+|||||++||+||++|+++|++|+||||++++||+++|++.++                                  
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g----------------------------------   46 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG----------------------------------   46 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCC----------------------------------
Confidence            3899999999999999999999999999999999999999976543                                  


Q ss_pred             CCCCceEEecCCCeEEeeCc-HHHHHHHhcCccccccc
Q 015413          103 QHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEF  139 (407)
Q Consensus       103 ~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f  139 (407)
                           +.+|. |++++.... .+.+++.+.+....+.+
T Consensus        47 -----~~~d~-G~~~~~~~~~~~~~l~~~~~~~~~~~~   78 (347)
T d2ivda1          47 -----YLVEQ-GPNSFLDREPATRALAAALNLEGRIRA   78 (347)
T ss_dssp             -----EEEES-SCCCEETTCHHHHHHHHHTTCGGGEEC
T ss_pred             -----EEEec-CceEEecCCHHHHHHHHHhccccccee
Confidence                 34566 477665544 56677777777665444

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.85  E-value=1.4e-20  Score=176.85  Aligned_cols=265  Identities=13%  Similarity=0.115  Sum_probs=142.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      ..+|||||||++||+||++|+++|++|+|||+++++||++.|++.+.                                 
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~---------------------------------   76 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE---------------------------------   76 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT---------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCC---------------------------------
Confidence            35899999999999999999999999999999999999999876432                                 


Q ss_pred             cCCCCceEEecCCCeEEeeCc-HHHHHHHhcCccccccccc-ccceeeEccCCceeecCCCHH--HHhhh----c--cCC
Q 015413          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKS-IDATFMLDADAKLCSVPDSRA--AIFKD----K--SLG  171 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~-~~~~~~~~~~g~~~~~p~~~~--~~~~~----~--~l~  171 (407)
                          ..+.+|. |++++.... .+.+++.+.+.... .+.. ....+.+. ++.......-..  .....    .  ...
T Consensus        77 ----~g~~~d~-G~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (370)
T d2iida1          77 ----AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDPGLLKYPVKPSEAGKS  149 (370)
T ss_dssp             ----TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCGGGGCCCCCGGGTTCC
T ss_pred             ----CCceecc-CceeecCccHHHHHHHHHhCCccc-eeeccCCceEEec-CCccccchhhhhhhhhhhhhhhhhhhhhh
Confidence                2345666 477665444 56666777665432 2211 11222221 222111100000  00000    0  000


Q ss_pred             hHH--HHHHHHHHHHHHhhcCCCccccccccccccccCCcHHHHHHhcC-CChhhHHHHHHHHHhccCCcchhhhhhchh
Q 015413          172 LME--KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (407)
Q Consensus       172 ~~~--k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  248 (407)
                      ...  ...+.++...+....        ...........+..+++.... ........+......   ...   ...+. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~-  214 (370)
T d2iida1         150 AGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNE---DSG---YYVSF-  214 (370)
T ss_dssp             HHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTC---GGG---TTSBH-
T ss_pred             hHHHHHHHHHHHHHHHHhhh--------hhhhhhhccchhHHHHHHHhccccHHHHHHhhccccc---cch---hhhHH-
Confidence            000  011111111111110        000011233456667776543 344444333221111   000   00111 


Q ss_pred             hHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEE-EEEe--CCCcEE
Q 015413          249 DGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK-GVRL--ASGQDI  325 (407)
Q Consensus       249 ~~l~~~~~~~~s~~~~~~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~-gV~~--~~G~~i  325 (407)
                        +.... ..... ...   ..+.++.+|++.++++|+   +..|+.|++|++|++|..+  ++++. .+..  .+++++
T Consensus       215 --~~~~~-~~~~~-~~~---~~~~~~~~~~~~l~~~l~---~~~g~~i~~~~~V~~I~~~--~~~v~v~~~~~~~~~~~~  282 (370)
T d2iida1         215 --IESLK-HDDIF-AYE---KRFDEIVDGMDKLPTAMY---RDIQDKVHFNAQVIKIQQN--DQKVTVVYETLSKETPSV  282 (370)
T ss_dssp             --HHHHH-HHHHH-TTC---CCEEEETTCTTHHHHHHH---HHTGGGEESSCEEEEEEEC--SSCEEEEEECSSSCCCEE
T ss_pred             --Hhhhh-hhhhh-ccc---cccccchhhHHHHHHHHH---HhcCCccccCceEEEEEEe--CCeEEEEEEecCCCeEEE
Confidence              11111 11111 111   237789999999999875   4678999999999999987  44432 2222  345689


Q ss_pred             EcCEEEE-CCCCCCCCCCccchhhhhhhhhh
Q 015413          326 LSHKLVL-DPSFTVPGSLASSHQQLQESFQA  355 (407)
Q Consensus       326 ~Ad~VI~-~p~~~~~~~~~~~~p~lp~~~~~  355 (407)
                      +||+||+ .|...+..+  .|+|+||+.+.+
T Consensus       283 ~aD~VI~A~p~~~l~~i--~~~p~l~~~~~~  311 (370)
T d2iida1         283 TADYVIVCTTSRAVRLI--KFNPPLLPKKAH  311 (370)
T ss_dssp             EESEEEECSCHHHHTTS--EEESCCCHHHHH
T ss_pred             EeeEEEecCCHHHHhhC--ccCCCCCHHHHH
Confidence            9999995 466655664  579999987654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.72  E-value=4.2e-17  Score=150.39  Aligned_cols=76  Identities=18%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (407)
                      +|||||||++||+||+.|+++|++|+|||+++++||+++|++.++                                   
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g-----------------------------------   47 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDG-----------------------------------   47 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETT-----------------------------------
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCC-----------------------------------
Confidence            599999999999999999999999999999999999999976543                                   


Q ss_pred             CCCceEEecCCCeEEeeC-cHHHHHHHhcCccccccc
Q 015413          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEF  139 (407)
Q Consensus       104 ~~~~~~idl~Gp~~~~~~-~~~~~~l~~~g~~~~~~f  139 (407)
                          +.+|. |+++++.. ..+.+++.+.+......+
T Consensus        48 ----~~~d~-G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (373)
T d1seza1          48 ----LIWDE-GANTMTESEGDVTFLIDSLGLREKQQF   79 (373)
T ss_dssp             ----EEEES-SCCCBCCCSHHHHHHHHHTTCGGGEEC
T ss_pred             ----EEEec-CceEEeCCCHHHHHHHHHhCCcccccc
Confidence                34666 47766544 366777777776554333

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.67  E-value=2.1e-17  Score=149.16  Aligned_cols=46  Identities=22%  Similarity=0.362  Sum_probs=42.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccchhh
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIAD   68 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~t~~~~~   68 (407)
                      .||||||||++||+||+.|+++|+ +|+||||++++||+++|+..++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~g   47 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG   47 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccCC
Confidence            389999999999999999999996 6999999999999999986543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.2e-15  Score=138.74  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=61.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      +.+|||||||++||+||+.|+++|++|+||||++++|||++|++.+|                                 
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g---------------------------------   51 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN---------------------------------   51 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETT---------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCC---------------------------------
Confidence            46899999999999999999999999999999999999999986543                                 


Q ss_pred             cCCCCceEEecCCCeEEeeCc--HHHHHHHhcCccc
Q 015413          102 SQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASH  135 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~~~--~~~~~l~~~g~~~  135 (407)
                            +.+|+ |+++++...  .+.+++.+.|+..
T Consensus        52 ------~~~d~-G~~~i~~~~~~~~~~l~~~lgl~~   80 (449)
T d2dw4a2          52 ------YVADL-GAMVVTGLGGNPMAVVSKQVNMEL   80 (449)
T ss_dssp             ------EEEES-SCCEECCSBTCHHHHHHHHHTCCE
T ss_pred             ------EEEEC-CCEEECCCCCcHHHHHHHHcCCcc
Confidence                  34677 578775433  5777888888643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=4.2e-14  Score=130.67  Aligned_cols=98  Identities=18%  Similarity=0.310  Sum_probs=70.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (407)
                      +|||||||||++||+||..|+++|++|+|+|+++++||++.|+...|                                 
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g---------------------------------   47 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG---------------------------------   47 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT---------------------------------
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCC---------------------------------
Confidence            48999999999999999999999999999999999999999976544                                 


Q ss_pred             cCCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccc-eeeEccCCceeecCCCHHHH
Q 015413          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDA-TFMLDADAKLCSVPDSRAAI  164 (407)
Q Consensus       102 ~~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~-~~~~~~~g~~~~~p~~~~~~  164 (407)
                            +.++..||++++..+ .+.+++.+.     .+|..... .+... +|+.+.+|.+...+
T Consensus        48 ------~~~~~~G~h~f~t~~~~v~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~P~~~~~i  100 (298)
T d1i8ta1          48 ------IQIHKYGAHIFHTNDKYIWDYVNDL-----VEFNRFTNSPLAIY-KDKLFNLPFNMNTF  100 (298)
T ss_dssp             ------EEEETTSCCCEEESCHHHHHHHHTT-----SCBCCCCCCCEEEE-TTEEEESSBSHHHH
T ss_pred             ------EEEeecCcEEEEecchHHHHHhhcc-----ccceeeccccceee-eceeEEecccHHHH
Confidence                  122222688876666 455555443     22322222 22222 78899999876543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.48  E-value=4.1e-14  Score=129.19  Aligned_cols=58  Identities=19%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+.+.+|.   ..+.++|.+.+++.|++++.+++|++|..+  +++ +.|++.+| +++||+||+
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~V~t~~g-~i~a~~VVi  199 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIV  199 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEE
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEE--CCE-EEEEECCc-EEEcCEEEE
Confidence            34455553   578889999999999999999999999986  555 47887666 699999994

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.48  E-value=2.4e-14  Score=133.20  Aligned_cols=100  Identities=15%  Similarity=0.228  Sum_probs=70.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (407)
                      ..|+|||||++||+||..|+++|++|+|+|+++++||++.|+....                                  
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~----------------------------------   48 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE----------------------------------   48 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT----------------------------------
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC----------------------------------
Confidence            4799999999999999999999999999999999999998864321                                  


Q ss_pred             CCCCceEEecCCCeEEeeCc-HHHHHHHhcCcccccccccccce-eeEccCCceeecCCCHHHHh
Q 015413          103 QHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIF  165 (407)
Q Consensus       103 ~~~~~~~idl~Gp~~~~~~~-~~~~~l~~~g~~~~~~f~~~~~~-~~~~~~g~~~~~p~~~~~~~  165 (407)
                        ...+..|. ||++++... .+.+.+.+.     .+|...... ... .+|+.+++|.+...+.
T Consensus        49 --~g~~~~~~-Gphif~t~~~~v~~~~~~~-----~~~~~~~~~~~~~-~~g~~~~~P~~~~~i~  104 (314)
T d2bi7a1          49 --TNVMVHVY-GPHIFHTDNETVWNYVNKH-----AEMMPYVNRVKAT-VNGQVFSLPINLHTIN  104 (314)
T ss_dssp             --TCCEEETT-SCCCEEESCHHHHHHHHTT-----SCEEECCCCEEEE-ETTEEEEESCCHHHHH
T ss_pred             --CCceEEec-CceeecCccHHHHHHHHHh-----hhhhhhcccccee-ecceeeccCccHHHHH
Confidence              01223455 688887665 455555433     233332222 222 2789999998765543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.47  E-value=5.3e-13  Score=119.50  Aligned_cols=58  Identities=21%  Similarity=0.336  Sum_probs=49.8

Q ss_pred             eecCC-cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          273 YPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       273 ~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      +|... ...+.+.|.+.+++.|++|+++++|++|..+  ++++.+|.+++|++++||.||+
T Consensus       103 ~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~a~~vI~  161 (251)
T d2i0za1         103 FPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVI  161 (251)
T ss_dssp             EETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEE
T ss_pred             ecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE--CCEEEEEEeCCCCeEecCeEEE
Confidence            44333 4678899999999999999999999999987  7888889999999999999994

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.37  E-value=9.4e-12  Score=114.55  Aligned_cols=59  Identities=25%  Similarity=0.304  Sum_probs=49.0

Q ss_pred             eEeecCC---cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .+++..|   ...+..+|.+.++..|++|+.+++|++|+.+  ++++++|++.+| +++||+||+
T Consensus       137 ~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~~g-~i~a~~VV~  198 (305)
T d1pj5a2         137 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVS  198 (305)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEE
T ss_pred             eecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEe--CCEEEEEeccce-eEECCEEEE
Confidence            3345555   3578889999999999999999999999997  888889997665 799999994

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.35  E-value=1.4e-12  Score=117.28  Aligned_cols=69  Identities=16%  Similarity=0.209  Sum_probs=50.8

Q ss_pred             EeecCCcchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 015413          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (407)
Q Consensus       272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~  340 (407)
                      .++......+.+.|.+.++..|++|+++++|++|+...++..+..+..+++++++||+||+ +-...+++
T Consensus       102 ~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~  171 (253)
T d2gqfa1         102 LFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPG  171 (253)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGG
T ss_pred             cccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccc
Confidence            4566677889999999999999999999999999986323333334456888999999994 33333343

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.35  E-value=7.6e-13  Score=120.12  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .+.+..|.   ..+.++|.+.+...|++|+.+++|++|..+   ++.++|++.+| +++||+||+.
T Consensus       140 ~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~~g-~i~a~~vV~A  201 (276)
T d1ryia1         140 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD---GEALFIKTPSG-DVWANHVVVA  201 (276)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS---SSSEEEEETTE-EEEEEEEEEC
T ss_pred             EEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEee---cceEEEecCCe-EEEcCEEEEC
Confidence            44555553   567888999999999999999999999864   44478987666 7999999953

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.32  E-value=6.8e-11  Score=108.92  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .++|||||||+|++||+||+.|+++|++|+||||++..||.+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~   56 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK   56 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence            4579999999999999999999999999999999999998543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.21  E-value=4.2e-10  Score=104.13  Aligned_cols=59  Identities=22%  Similarity=0.232  Sum_probs=46.6

Q ss_pred             eecCCc---chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 015413          273 YPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (407)
Q Consensus       273 ~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~Ad~VI~  332 (407)
                      ++.+|.   .+|.++|.+.+++.|++++++++|+++.++ ++++++||...  +++  ++.|+.||+
T Consensus       139 ~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~-~~g~V~Gv~~~~~~~~~~~i~Ak~VVl  204 (317)
T d1qo8a2         139 RPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAKSVVL  204 (317)
T ss_dssp             ECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC-TTSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             ccccccccchhhhHHHHHHhhhccceeeeccchhheeec-ccccceeeEeecccceEEEEeccceEE
Confidence            455553   358899999999999999999999999886 47888888754  343  478999994

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.21  E-value=3e-10  Score=105.31  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+++||||||+|++||+||+.|+++|++|+||||.+..||.+.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~   63 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK   63 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            4468999999999999999999999999999999999998643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.6e-10  Score=96.11  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=38.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ..+|+|||||++||+||..|+++|++|+|+|+.+++||...
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            46899999999999999999999999999999999999765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=8.6e-11  Score=103.42  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=41.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .++|||||||||.+||+||..|++.|++|+|+|+++.+||.+..
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~   46 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence            46799999999999999999999999999999999999997654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.95  E-value=8.8e-09  Score=96.74  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      +||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            79999999999999999999999999999994

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.94  E-value=2.5e-10  Score=99.63  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=40.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ++|||||||||.+||+||..+++.|++|+|+|+++.+||.+..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~   44 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   44 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeec
Confidence            4799999999999999999999999999999999999997653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=3.3e-10  Score=102.77  Aligned_cols=43  Identities=16%  Similarity=0.137  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCeEEEEccCCCCCCcccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~-~G~~VlvlE~~~~~GG~~~t   63 (407)
                      .++||||||||++||+||+.|++ .|++|+|||+++++||.++.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            36999999999999999999987 59999999999999998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.89  E-value=4.4e-10  Score=103.02  Aligned_cols=47  Identities=17%  Similarity=0.198  Sum_probs=42.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccccchh
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~~~   67 (407)
                      +.+||||||||++||++|+.|.++|.+|+|||+++.+||.+..-+.+
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~yp   52 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYP   52 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCT
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCC
Confidence            57999999999999999999999999999999999999987543333

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.85  E-value=6.7e-10  Score=97.64  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..+|||||||||.+||+||.+|++.|++|+|+|++..+||.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~   47 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence            45799999999999999999999999999999999999996543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.84  E-value=8.6e-10  Score=104.60  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHHhh------CCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASA------SGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~------~G~~VlvlE~~~~~GG~~~t   63 (407)
                      +|||||||||.+||+||+.|||      +|++|+||||+..+|....+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~   79 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS   79 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccc
Confidence            5999999999999999999998      89999999999999776543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.82  E-value=1.1e-09  Score=95.62  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ++|||||||||.+||+||.+|+|+|++|+|+|+....||+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~   43 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA   43 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcccc
Confidence            579999999999999999999999999999999887776543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.81  E-value=1.5e-09  Score=95.69  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=47.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413            3 GNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      |.|.++-|...++++ .....+|+|||||.+||+||..|++.|++|+|+|+++.+||.+..
T Consensus        31 ~~e~~~~~~p~~~~~-~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          31 GEEYRRGWHPEKFRQ-TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             TTHHHHCCCSSCCCC-CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             ChHHhcCCCCCccCc-ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            334443333333443 456789999999999999999999999999999999999998764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=9.7e-10  Score=95.65  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=37.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ++|||||||||.+|++||..|++.|++|+|+|++ .+||.+.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            4699999999999999999999999999999995 6899653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.77  E-value=3.1e-09  Score=94.34  Aligned_cols=41  Identities=17%  Similarity=0.128  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .+..+|||||||++||++|+.|+++|++|+|+||+...+|.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            34679999999999999999999999999999998654443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.76  E-value=2.7e-09  Score=100.26  Aligned_cols=42  Identities=14%  Similarity=0.246  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      ..+|||||||+|.+|+++|.+|+++|+||+|||+....++..
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~   43 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   43 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Confidence            457999999999999999999999999999999976655443

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.74  E-value=2.1e-09  Score=99.79  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCcE--EEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQD--ILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~~--i~Ad~VI~  332 (407)
                      ..+..+|.+.+...|.+|+.+++|.++..+  +++++++..   .+|+.  +.|+.||+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~Ak~Vvl  214 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEecCeEEE
Confidence            468888999999999999999999999987  788777654   35654  79999994

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.3e-09  Score=97.33  Aligned_cols=44  Identities=16%  Similarity=0.308  Sum_probs=37.6

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        17 ~~~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      +++..+|||||||+|++||+||+.+++.| +|+||||.+..||.+
T Consensus         2 ~~p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           2 TLPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             BCCSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             CCCcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            35566899999999999999999999988 999999999888864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.71  E-value=5e-09  Score=92.09  Aligned_cols=38  Identities=32%  Similarity=0.294  Sum_probs=35.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      +|||||||||.+||+||.+++|.|++|+|+|++...|.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~   40 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL   40 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            69999999999999999999999999999999876554

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=6.2e-09  Score=87.79  Aligned_cols=39  Identities=13%  Similarity=0.395  Sum_probs=35.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t   63 (407)
                      |||||||||.+||.||.+++|.|.+|+++|++  +||.+..
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~   40 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILD   40 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccc
Confidence            89999999999999999999999999999974  7887653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=3.6e-09  Score=93.03  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-------CeEEEEccCCCCCCcccc
Q 015413           23 FDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G-------~~VlvlE~~~~~GG~~~t   63 (407)
                      ++|+|||||.+||+||..|+++|       ++|+|+||++++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            68999999999999999999998       589999999999997753

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=4.2e-09  Score=97.78  Aligned_cols=43  Identities=28%  Similarity=0.234  Sum_probs=39.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      +.++|||||||+|++||+||..++++|++|+|+||.+..||.+
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            4568999999999999999999999999999999999888753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.64  E-value=9.8e-09  Score=91.92  Aligned_cols=44  Identities=34%  Similarity=0.480  Sum_probs=40.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        19 ~~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      .+.+||+||||||.+|+.||..|++.|.+|+++|+++.+||.+.
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            45679999999999999999999999999999999999999763

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.64  E-value=1.3e-08  Score=90.53  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=35.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      +..+|+|||||++||+||..|+++|++|+||||++.++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            345799999999999999999999999999999987653

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=1.1e-08  Score=88.94  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC-CCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGS   59 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~-~~~GG   59 (407)
                      .|||||||||++|+.||.++||+|.+|+++|++ +.+|+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~   40 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMM   40 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcc
Confidence            599999999999999999999999999999987 44543

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.9e-09  Score=89.50  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      .+|||||||||.+||+||.++++.|++|+|+|+ +.+||.+
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            469999999999999999999999999999998 4677754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=1.1e-08  Score=94.13  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=39.0

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCeEEEEccCCCCCCcccc
Q 015413           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~--~G~~VlvlE~~~~~GG~~~t   63 (407)
                      ++||+|||+|++||+||..|++  .|++|+|+|+++++||.++.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            5899999999999999999996  49999999999999998864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.60  E-value=1.2e-08  Score=86.73  Aligned_cols=41  Identities=15%  Similarity=0.250  Sum_probs=37.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCe-EEEEccCCCCCCcccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS   63 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~-VlvlE~~~~~GG~~~t   63 (407)
                      -.|+|||||.+||+||..|+++|++ |+|+|++++.||..+.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence            4699999999999999999999985 9999999999997654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.58  E-value=2.1e-08  Score=93.00  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCCCCCCccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSL   64 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~~~GG~~~t~   64 (407)
                      ..-.|+|||||++||+||..|+++|  .+|+|+||++.+||.+..-
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~   48 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYT   48 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCccccc
Confidence            3457999999999999999998877  5999999999999987643

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.58  E-value=1.1e-08  Score=91.39  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=36.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ||+||||+|.+|+.||.++++.|++|+++|++ .+||.+.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            89999999999999999999999999999985 6899764

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.58  E-value=1.7e-08  Score=94.81  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .+++||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45799999999999999999999999999999994

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.57  E-value=1.9e-08  Score=90.12  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=37.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCCCCCcccccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLS   65 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~~GG~~~t~~   65 (407)
                      +||+|||||++||++|..|+++|. +|+|+||++.++.......
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~   45 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGIN   45 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEE
Confidence            699999999999999999999995 9999999999876554443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.54  E-value=1.8e-08  Score=88.15  Aligned_cols=41  Identities=10%  Similarity=-0.059  Sum_probs=36.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcccc
Q 015413           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~~t   63 (407)
                      ..|+|||||.+||+||..|+++  |++|+|+|+++++||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            3799999999999999999876  7899999999999997653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=1.5e-08  Score=88.07  Aligned_cols=40  Identities=20%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +||+||||||.+|+.||..+++.|++|+|+|++ .+||.+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            699999999999999999999999999999986 6788653

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.53  E-value=2.4e-08  Score=93.10  Aligned_cols=40  Identities=20%  Similarity=0.244  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCCCCcc
Q 015413           22 AFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~----~G~~VlvlE~~~~~GG~~   61 (407)
                      ++||||||+|++||+||+.|++    +|++|+||||....||.+
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s   64 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA   64 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence            6899999999999999999975    799999999998887755

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.53  E-value=1.6e-08  Score=87.84  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      +|||||||||.+||+||..++|.|++|+|+|+. .+||.+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCccee
Confidence            599999999999999999999999999999996 5677554

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=3.2e-08  Score=83.99  Aligned_cols=44  Identities=11%  Similarity=0.109  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~   64 (407)
                      +..||+|||||.+||.||..|+|.|.+|+|+|++++-|.+..+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~   47 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT   47 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccc
Confidence            46899999999999999999999999999999987766555543

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.47  E-value=3.8e-08  Score=92.31  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      +.||+||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            3699999999999999999999999999999995

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.46  E-value=4.7e-08  Score=90.72  Aligned_cols=46  Identities=15%  Similarity=0.215  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHh-----hCCCeEEEEccCCCC--CCcccccch
Q 015413           21 TAFDLIVIGTGLPESVISAAAS-----ASGKSVLHLDPNPFY--GSHFSSLSI   66 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La-----~~G~~VlvlE~~~~~--GG~~~t~~~   66 (407)
                      ..|||+|||||++||++|..|+     ++|++|+||||++.+  .|+..++..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~   58 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQC   58 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECH
Confidence            4699999999999999999996     689999999998765  455555543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.44  E-value=4.1e-08  Score=86.44  Aligned_cols=37  Identities=30%  Similarity=0.315  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~~   57 (407)
                      ++|||||||+|.+|++||.++++.| ++|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            5799999999999999999999998 579999998763

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.42  E-value=6.3e-08  Score=84.70  Aligned_cols=35  Identities=31%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ++|||||||||.+||+||.++++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            47999999999999999999999885 689999853

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.42  E-value=6e-08  Score=87.75  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +||+|||||++||++|..|+++|++|+||||++.
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            6999999999999999999999999999999874

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.36  E-value=1e-07  Score=81.01  Aligned_cols=37  Identities=14%  Similarity=0.099  Sum_probs=34.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      ..+||+|||||.+||.||..|+|.|.+|+|+|+....
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            4689999999999999999999999999999987764

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.5e-07  Score=86.29  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCCCCcc
Q 015413           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~GG~~   61 (407)
                      ++||||||+|++||+||+.++++  |.+|+||||....||.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            68999999999999999999986  77999999998887753

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.29  E-value=2.4e-07  Score=87.52  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (407)
                      ++||+||||+|.+|+++|.+|+++| ++|+||||...
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            4699999999999999999999987 89999999643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.28  E-value=2.6e-07  Score=87.45  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (407)
                      ++||+||||+|.+|+++|.+|+++| ++|+||||...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999998 79999999854

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.15  E-value=4.7e-07  Score=84.30  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=32.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..||+||||+|.+|+++|.+||++ +||+||||.+.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            359999999999999999999987 99999999764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.95  E-value=3.8e-07  Score=79.64  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=32.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .|+|||||+.||++|+.|+++|++|+++|+.+.++.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            599999999999999999999999999998765543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.88  E-value=8.8e-06  Score=62.76  Aligned_cols=38  Identities=26%  Similarity=0.181  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -+++|||||..|+-+|..|++.|.+|+++|+++++...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc
Confidence            47999999999999999999999999999999998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.83  E-value=9.3e-06  Score=63.23  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=36.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      -.|+|||||+.|+-+|..|++.|++|+++|+.+++-++..
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~   70 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYL   70 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTC
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCccccccc
Confidence            4799999999999999999999999999999999866543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.83  E-value=9.6e-06  Score=62.96  Aligned_cols=40  Identities=23%  Similarity=0.327  Sum_probs=36.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      ..++|||||+.|+-+|..|++.|++|+++|+++++-.+..
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~   70 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAA   70 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTS
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccC
Confidence            4799999999999999999999999999999999876543

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=3.4e-06  Score=73.49  Aligned_cols=39  Identities=18%  Similarity=0.173  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC---CeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G---~~VlvlE~~~~~GG~~~   62 (407)
                      -+|||||+|.+|++||.++++.|   ++|+++|+ +.+||.+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceee
Confidence            47999999999999999877655   68999998 57888543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.81  E-value=1.1e-05  Score=63.78  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~   62 (407)
                      -.++|||||+.|+-+|..|++.|++|+++|+++++..+..
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~   75 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVT   75 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccccc
Confidence            4799999999999999999999999999999999876653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.81  E-value=8.4e-06  Score=63.38  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=34.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      +++|||||+.|+-+|..|++.|++|+++|+++++-+
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            589999999999999999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=1.4e-05  Score=61.44  Aligned_cols=37  Identities=11%  Similarity=0.078  Sum_probs=34.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++|||||+.|+-+|..|++.|.+|+++|+.+++...
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~   59 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS   59 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh
Confidence            5999999999999999999999999999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.75  E-value=1.3e-05  Score=61.60  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++|||||+.|+-+|..|++.|++|+++|+.+++.-.
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~   59 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT   59 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc
Confidence            6999999999999999999999999999999998744

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.71  E-value=1.7e-05  Score=61.15  Aligned_cols=36  Identities=8%  Similarity=0.022  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.|+|||||..|+-+|..|++.|.+|+++|+++++-
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            369999999999999999999999999999999985

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.68  E-value=3.2e-05  Score=55.43  Aligned_cols=44  Identities=30%  Similarity=0.505  Sum_probs=39.8

Q ss_pred             CceEEEEEEEeCCCCC--CCCCcEEEEeCCCCC---CceEEEEeeccCC
Q 015413          362 KGKVARGICITRSSLK--PDLSNFLVIFPPRCK---IDSWYFCLCYAED  405 (407)
Q Consensus       362 ~g~~~k~i~i~~~p~~--~~~~~~~~~~p~~~~---~~~~~~~~~~~~~  405 (407)
                      .|.++|+|||.++|..  .+.++++|+||-.++   +|.|.++++++|+
T Consensus         3 ~G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~h~   51 (97)
T d1d5ta2           3 AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHN   51 (97)
T ss_dssp             EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGT
T ss_pred             ccEEEEEEEEecCCcCCCCCCccEEEEeehHHhccCCCEEEEEeccccc
Confidence            5889999999999998  567889999999995   5999999999996

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.65  E-value=3.1e-05  Score=60.26  Aligned_cols=39  Identities=15%  Similarity=0.071  Sum_probs=35.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -.++|||||+.|+=.|..|++.|.+|+++|+.+++-...
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~   65 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA   65 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc
Confidence            369999999999999999999999999999999987653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=3.3e-05  Score=60.13  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      -.++|||||+.|+-+|..|++.|.+|+++|+++++-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc
Confidence            3699999999999999999999999999999999854

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=4.7e-05  Score=54.54  Aligned_cols=44  Identities=23%  Similarity=0.415  Sum_probs=39.2

Q ss_pred             Cce-EEEEEEEeCCCCC--CCCCcEEEEeCCCCC---CceEEEEeeccCC
Q 015413          362 KGK-VARGICITRSSLK--PDLSNFLVIFPPRCK---IDSWYFCLCYAED  405 (407)
Q Consensus       362 ~g~-~~k~i~i~~~p~~--~~~~~~~~~~p~~~~---~~~~~~~~~~~~~  405 (407)
                      .|. ++|+|||.++|..  .+.++++|+||-.+.   +|.|.++++++|.
T Consensus         3 ~GqkViRaICIl~hPipnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~h~   52 (98)
T d2bcgg3           3 TGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHN   52 (98)
T ss_dssp             EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGGGT
T ss_pred             ccceEEEEEEEecCCcCCCCCCceEEEEEehHHhCCCcCEEEEEeccccc
Confidence            575 9999999999997  567889999999984   6999999999996

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=3.6e-05  Score=59.63  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++|||||..|+-.|..|++.|.+|+++|+++++-..
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~   61 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS   61 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh
Confidence            6999999999999999999999999999999998754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.55  E-value=4.9e-05  Score=58.55  Aligned_cols=38  Identities=21%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      -+++|||||..|+-.|..|++.|.+|+++|+++++--.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc
Confidence            46999999999999999999999999999999997543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.50  E-value=2.9e-05  Score=63.85  Aligned_cols=40  Identities=20%  Similarity=0.334  Sum_probs=34.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCCCCCCcccc
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~GG~~~t   63 (407)
                      .|||||||.+|+.+|..|++.|.  +|+++|+++++.+....
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~   45 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLS   45 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTH
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccc
Confidence            69999999999999999999885  89999999987665443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.43  E-value=4.5e-05  Score=59.16  Aligned_cols=37  Identities=19%  Similarity=0.181  Sum_probs=34.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .++|||||..||-.|..|++.|.+|+|+|+++++-..
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~   63 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT   63 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch
Confidence            6999999999999999999999999999999998643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.25  E-value=8.6e-05  Score=61.32  Aligned_cols=39  Identities=18%  Similarity=0.060  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      -||||||||.+|+-+|..|++.|++|+|++..++.....
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~   42 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPH   42 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCB
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccch
Confidence            489999999999999999999999999999888765443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.25  E-value=0.00016  Score=55.59  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      -.++|||+|+.|+-.|..|++.|.+|+++|+++++.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            479999999999999999999999999999999876

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00012  Score=53.68  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|+|+|.|.+|+++|..|++.|.+|++.|.+..
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            3599999999999999999999999999998765

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.00018  Score=55.53  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~   57 (407)
                      .++|||||..|+-.|..|++.|.+|++++++..+
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            5999999999999999999999999999976544

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00013  Score=62.20  Aligned_cols=38  Identities=21%  Similarity=0.360  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEEccCCCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFY   57 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~~~   57 (407)
                      ++++++||||||++|+.+|..|.+.|+  +|+++++..++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            567999999999999999999998876  59999887654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.18  E-value=0.00013  Score=59.77  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|+|||||..|..+|..|+++|++|+|+|++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            3699999999999999999999999999999765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.10  E-value=0.0008  Score=51.24  Aligned_cols=52  Identities=15%  Similarity=0.252  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++++.+.+..++.|.++++|+.|++|+.+ ++++ ..|++++|++++||.||.
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~-~~~~-~~v~~~~G~~i~~D~Vi~  115 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELN-ADGS-KSVTFESGKKMDFDLVMM  115 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEC-TTSC-EEEEETTSCEEEESEEEE
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEc-CCCe-EEEEECCCcEEEeCEEEE
Confidence            678888889999999999999999999875 2555 468899999999999984

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.09  E-value=0.00021  Score=57.90  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      .|||||||.+|+-+|..|++ +.+|+|+|+++++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~   35 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc
Confidence            48999999999999999976 78999999988754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.09  E-value=0.00089  Score=52.24  Aligned_cols=54  Identities=7%  Similarity=0.028  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+..++.|.++++|+.|++|....+++++..|.+++|+++.||.||+
T Consensus        77 ~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~  130 (133)
T d1q1ra2          77 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIA  130 (133)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEE
T ss_pred             hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEE
Confidence            356677778888999999999999999886445677788999999999999985

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.95  E-value=0.00029  Score=58.94  Aligned_cols=34  Identities=12%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCeEEEEccCCCC
Q 015413           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~--G~~VlvlE~~~~~   57 (407)
                      .|+|||||.+|+.+|..|++.  +.+|+++|+++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            599999999999999999987  4589999998876

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.94  E-value=0.00037  Score=53.21  Aligned_cols=36  Identities=8%  Similarity=0.043  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La---~~G~~VlvlE~~~~~G   58 (407)
                      -.++|||||+.|+-+|..|+   ++|.+|+++|+.+++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            36999999999999996554   5667899999999874

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.88  E-value=0.00041  Score=57.12  Aligned_cols=32  Identities=28%  Similarity=0.352  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+.|||+|..|+..|..|+++|++|.++++++
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.87  E-value=0.0016  Score=49.47  Aligned_cols=53  Identities=15%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (407)
                      .++.+.+.+..++.|.++++|+.|++|+.+ +++. ..|.+++|+++.||.||..
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~-~~g~-~~v~~~~g~~i~~D~Vi~a  114 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKN-ADGT-RHVVFESGAEADYDVVMLA  114 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEEC-TTSC-EEEEETTSCEEEESEEEEC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEEC-CCCE-EEEEECCCCEEEcCEEEEe
Confidence            568888889999999999999999999876 2444 5788899999999999853

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.79  E-value=0.00024  Score=58.69  Aligned_cols=37  Identities=19%  Similarity=0.158  Sum_probs=33.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~   60 (407)
                      .|||||||.+|+-+|..|++.|.+|.+++..++....
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~   41 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   41 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEecccccc
Confidence            5999999999999999999999999999887776543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0023  Score=50.01  Aligned_cols=51  Identities=18%  Similarity=0.176  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++++.+.+.+++.|.++++|+.|++|..+  +++ +.|++++|+++.||.||.
T Consensus        83 ~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~--~~~-~~v~l~~G~~i~aD~Vi~  133 (137)
T d1m6ia2          83 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVA  133 (137)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCcEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEE
Confidence            356677778888999999999999999876  555 468899999999999995

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0019  Score=48.95  Aligned_cols=52  Identities=12%  Similarity=0.144  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++++.+.+..++.|.++++++.|++|..+ +++. +.|++++|+++.+|.||+
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~~~-~~v~~~~g~~~~~D~vi~  113 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKN-TDGS-LTLELEDGRSETVDCLIW  113 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEEC-TTSC-EEEEETTSCEEEESEEEE
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCcE-EEEEECCCCEEEcCEEEE
Confidence            568888888899999999999999999876 2444 468889999999999985

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.72  E-value=0.00077  Score=54.03  Aligned_cols=41  Identities=10%  Similarity=0.144  Sum_probs=34.8

Q ss_pred             cEEEE--CCChhHHHHHHHHhhCCCeEEEEccCCCCCCccccc
Q 015413           24 DLIVI--GTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (407)
Q Consensus        24 DVvVI--GaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~   64 (407)
                      .|||+  |+|..|+-+|..|++.|.+|+++|+.++++-.....
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~   83 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTL   83 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchh
Confidence            45555  999999999999999999999999999987554433

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0008  Score=52.78  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCeEEEEccCCCCCCccc
Q 015413           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFS   62 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~----~G~~VlvlE~~~~~GG~~~   62 (407)
                      -.++|||||+.|+-+|..|++    .|.+|+++|+++++.++..
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~   81 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKIL   81 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccC
Confidence            369999999999999988864    5999999999999876543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00079  Score=54.33  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||+|--|...|..|+++|++|+++.+++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            589999999999999999999999999998765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.66  E-value=0.0007  Score=56.95  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||.|..||..|+.||++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.57  E-value=0.0012  Score=50.15  Aligned_cols=36  Identities=14%  Similarity=0.070  Sum_probs=31.1

Q ss_pred             cEEEECCChhHHHHHHHHh---hCCCeEEEEccCCCCCC
Q 015413           24 DLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La---~~G~~VlvlE~~~~~GG   59 (407)
                      .++|||||+.|+-+|..|+   +.|.+|+++|+.+++..
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            6999999999999997654   56999999999998864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.0016  Score=51.89  Aligned_cols=41  Identities=20%  Similarity=0.360  Sum_probs=35.2

Q ss_pred             CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        15 ~~~~~~~~~DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      |.++.+..-.|.||| .|+-|...|..|+++|++|.++|++.
T Consensus         2 ~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           2 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            345555666899999 79999999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0018  Score=53.79  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|.|||||..|...|..++++|++|+++|.+..
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4799999999999999999999999999998763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.32  E-value=0.0018  Score=50.25  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|+|+|+|--|...|..|.++|++|+++|++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            58999999999999999999999999999964

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.32  E-value=0.0018  Score=52.17  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      -.|+|||+|.+|+.|++...+-|-+|.++|.+
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            57999999999999999999999999999986

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.28  E-value=0.0013  Score=54.42  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||||..|...|..++++|++|+++|.++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999999999999975

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0076  Score=45.89  Aligned_cols=53  Identities=17%  Similarity=0.236  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-----~~i~Ad~VI~  332 (407)
                      .++.+.+.+..++.|.++++|+.|++|+.+ +++..+.+++.++     ++++||.||+
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRN-DDKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE-TTTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEe-CCCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence            578888889899999999999999999987 3565556665443     4699999985

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.13  E-value=0.0026  Score=51.89  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|+|||+|.+|+.||....+-|.+|.++|.+..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            4799999999999999999999999999998753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.11  E-value=0.0031  Score=50.38  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=35.5

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           16 PPIEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        16 ~~~~~~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      |+++.++..|.|||+|..|.++|..|+..|. +++++|.+.
T Consensus         1 ~~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           1 PALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            5677778999999999999999999999886 799999775

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.05  E-value=0.01  Score=44.82  Aligned_cols=52  Identities=8%  Similarity=0.046  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEE-cCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL-SHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~-Ad~VI~  332 (407)
                      .++++.+.+..+..|.++++++.|++|+.. +++. +.|++++|+++. +|.||.
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~~v~~~~G~~~~~~D~Vi~  115 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKV-SDKN-LSIHLSDGRIYEHFDHVIY  115 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-STTC-EEEEETTSCEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEc-CCCe-EEEEECCCCEEEeCCEEEE
Confidence            578888888889999999999999999875 2454 578889999885 699984

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.03  E-value=0.0041  Score=49.56  Aligned_cols=41  Identities=27%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             CCCCCCCCCcccEEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 015413           13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (407)
Q Consensus        13 ~~~~~~~~~~~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (407)
                      .++|.+.   -+|||||||-+++=+|..|.|.| .+|+++++++.
T Consensus        39 ~~~p~~~---~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          39 SPLPSIR---GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCCCCC---SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CccccCC---CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            3455543   36999999999999999999998 56989988775

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.90  E-value=0.013  Score=43.99  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=40.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEe-CCC--cEEEcCEEEEC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASG--QDILSHKLVLD  333 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~-~~G--~~i~Ad~VI~~  333 (407)
                      .++++.+.+..++.|.++++++.|++|..+  ++.+ .|.+ .+|  +++.||.||++
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~--~~~~-~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEER--EDGV-TVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEE-EEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEc--CCEE-EEEEEeCCCEEEEEeEEEEEC
Confidence            468888888889999999999999999876  3332 3433 345  46899999863

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.89  E-value=0.0036  Score=50.36  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48999999999999999999999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.89  E-value=0.0029  Score=48.97  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+||||.|-.|...|..|.+.|++|+++|.+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            48999999999999999999999999999974

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.66  E-value=0.0039  Score=51.60  Aligned_cols=36  Identities=17%  Similarity=0.134  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      |.+..|.|||+|--|.+.|..|+++|++|.+..+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            455689999999999999999999999999998753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.38  E-value=0.026  Score=42.69  Aligned_cols=47  Identities=23%  Similarity=0.285  Sum_probs=39.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++++.+.+..++.|.++++++.|+++.    ++   .|+++||+++.||.||.
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~----~~---~v~l~dg~~i~~D~vi~  118 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV----DG---VVLLDDGTRIAADMVVV  118 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE----TT---EEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe----CC---EEEECCCCEEECCEEEE
Confidence            4677777788889999999999999874    44   35679999999999985

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.34  E-value=0.024  Score=42.72  Aligned_cols=52  Identities=12%  Similarity=0.132  Sum_probs=40.7

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC---cEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG---QDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G---~~i~Ad~VI~  332 (407)
                      -.++.+.+.+..++.|.++++++.|++|+.+  ++. +.|++.++   +++.||.||+
T Consensus        62 d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~-v~v~~~~~~~~~~~~~D~vlv  116 (119)
T d3lada2          62 DEQVAKEAQKILTKQGLKILLGARVTGTEVK--NKQ-VTVKFVDAEGEKSQAFDKLIV  116 (119)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEEC--SSC-EEEEEESSSEEEEEEESEEEE
T ss_pred             cchhHHHHHHHHHhcCceeecCcEEEEEEEe--CCE-EEEEEEECCCCEEEECCEEEE
Confidence            3678888889999999999999999999886  443 34554433   5799999985

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.32  E-value=0.016  Score=44.09  Aligned_cols=50  Identities=10%  Similarity=0.078  Sum_probs=40.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++++.+.+..++.|.++++++.|++|..   ++++..| +.+|++++||.||+
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~---~~~~~~v-~~dg~~i~~D~vi~  121 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKV-VTDKNAYDADLVVV  121 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEE-EESSCEEECSEEEE
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEc---CCCEEEE-EeCCCEEECCEEEE
Confidence            45777788888899999999999999975   4454455 47899999999985

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.10  E-value=0.024  Score=43.01  Aligned_cols=53  Identities=21%  Similarity=0.312  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC-C--cEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G--~~i~Ad~VI~  332 (407)
                      .++.+.+.+..++.|.++++|+.|++|+.+ +++..+.++..+ |  +++.||.|++
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vLv  121 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTS-GDGVKLTVEPSAGGEQTIIEADVVLV  121 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECS-SSSEEEEEEESSSCCCEEEEESEEEC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEc-cCeEEEEEEECCCCeEEEEEcCEEEE
Confidence            578888889999999999999999999976 355444555443 3  3489999985

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.09  E-value=0.0086  Score=49.53  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||.|..||..|..|| .|++|+.+|-+..
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            4899999999999999887 4999999998854

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.03  E-value=0.008  Score=44.57  Aligned_cols=34  Identities=9%  Similarity=0.049  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..+|+|||+|.+|.-.|..|++.+++|+++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3589999999999999999999999988776654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.93  E-value=0.012  Score=47.10  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .|-|||.|..|...|..|+++|++|.+++++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            4899999999999999999999999999975

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.92  E-value=0.011  Score=46.46  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CeEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G--~~VlvlE~~~   55 (407)
                      +.+..|.|||+|.-|.++|..|+..|  ..+.++|.+.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            44568999999999999999999998  4899999764

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.89  E-value=0.031  Score=41.58  Aligned_cols=43  Identities=16%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             CceEEEEEEEeCCCCCCCCC--cEEEEeCCCC---CCceEEEEeeccC
Q 015413          362 KGKVARGICITRSSLKPDLS--NFLVIFPPRC---KIDSWYFCLCYAE  404 (407)
Q Consensus       362 ~g~~~k~i~i~~~p~~~~~~--~~~~~~p~~~---~~~~~~~~~~~~~  404 (407)
                      |..|+|+|||+|+|+.+..+  ++.+++||..   .++.+..++++++
T Consensus         2 ~~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~~~~~v~vl~~ss~~   49 (113)
T d1vg0a2           2 YRQISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSST   49 (113)
T ss_dssp             CEEEEEEEEEESSCSSCCSCCCCCEEEEECCSSTTSCCEEEEEECGGG
T ss_pred             cEEEEEEEEEECCCCCCCCCCccEEEeecCcccCCCCCEEEEEecCCc
Confidence            56799999999999874333  3444444433   5677777766654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.57  E-value=0.00091  Score=57.43  Aligned_cols=36  Identities=0%  Similarity=-0.052  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.++
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            468999999999999999999999999999999875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.54  E-value=0.016  Score=47.16  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             cEEEE-CCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVI-GTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVI-GaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|+|| |+|--|.+.|..|+++|++|++..|+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47888 789999999999999999999998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.52  E-value=0.038  Score=41.44  Aligned_cols=54  Identities=17%  Similarity=0.123  Sum_probs=41.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEE---eCCCcEEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQDILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~~i~Ad~VI~  332 (407)
                      -.++.+.+.+..++.|.++++++.|++|+.+ +++++..+.   ..+++++.||.||+
T Consensus        62 d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~i~~D~Vi~  118 (121)
T d1mo9a2          62 DNETRAYVLDRMKEQGMEIISGSNVTRIEED-ANGRVQAVVAMTPNGEMRIETDFVFL  118 (121)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEEC-TTSBEEEEEEEETTEEEEEECSCEEE
T ss_pred             ccchhhhhhhhhhccccEEEcCCEEEEEEec-CCceEEEEEEEeCCCCEEEEcCEEEE
Confidence            3467788888888999999999999999986 356654443   33557799999995

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.43  E-value=0.019  Score=46.56  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      -+|-|||-|..|...|..|.++|++|.+++++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            479999999999999999999999999998764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.29  E-value=0.016  Score=47.23  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEcc
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~   53 (407)
                      .|.|||+|--|.+.|..|+++|++|.+.-+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999999999999999999999844

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.26  E-value=0.021  Score=45.53  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .|-|||.|..|...|..|+++|++|.+++++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4899999999999999999999999999875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=0.019  Score=45.23  Aligned_cols=32  Identities=13%  Similarity=0.097  Sum_probs=29.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEc
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLD   52 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE   52 (407)
                      +.-.|+|||||-.|+..|..|.++|.+|+|+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            34679999999999999999999999999994

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.81  E-value=0.031  Score=41.54  Aligned_cols=35  Identities=11%  Similarity=0.051  Sum_probs=31.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      .+...|+|||+|-.|..-|..|.+.|.+|+|+...
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            34567999999999999999999999999998653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.76  E-value=0.055  Score=41.01  Aligned_cols=55  Identities=7%  Similarity=0.119  Sum_probs=41.2

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEEC
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~Ad~VI~~  333 (407)
                      -.++++.+.+..++.|.++++++.|++++.+ +++..+.++..+|  ++++||.|++.
T Consensus        66 d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~-~~g~~v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          66 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPK-EDGVYVTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             CHHHHHHHHHHHGGGEEEEECSCEEEEEEEE-TTEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             hhhHHHHHHHHHHHcCcccccCcEEEEEEEc-CCcEEEEEEeCCCCeEEEEcCEEEEe
Confidence            3578888888889999999999999999986 2443333333333  46999999853

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.74  E-value=0.03  Score=45.22  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      +|-|||.|.-|...|..|.++|++|.+.+++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            6899999999999999999999999999874

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.036  Score=42.16  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=33.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~G   58 (407)
                      .-+|+|||+|-+.+-.|..|++-+.+|+++-+++.+-
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            3589999999999999999999999999999988653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.56  E-value=0.063  Score=42.61  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=31.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--eEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~   54 (407)
                      ....|.|||+|..|.++|+.|+..|.  ++.++|.+
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            34689999999999999999999998  89999986

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.50  E-value=0.029  Score=44.92  Aligned_cols=32  Identities=34%  Similarity=0.377  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|+|+|+|..|+.++..+...|.+|+++|.++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            58999999999999999999999999999874

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.043  Score=41.73  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=34.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      ..+|+|||+|-+.+-.|..|++-..+|+++-+++.+-+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc
Confidence            35899999999999999999999999999999887643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.21  E-value=0.062  Score=42.58  Aligned_cols=36  Identities=14%  Similarity=0.197  Sum_probs=31.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      ++...|.|||+|..|.++|+.|...|.  .+.++|.+.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            344579999999999999999999987  799998764

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.031  Score=44.33  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=23.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeE
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSV   48 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~V   48 (407)
                      -.|||||+|..|+-+|..|++.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            47999999999999999999999754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.95  E-value=0.064  Score=40.97  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=35.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG   59 (407)
                      .-||+|||+|-+.+-.|..|++--.+|+++-+++.+-+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            46899999999999999999999999999999998754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.04  Score=44.13  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      .|+|+|+|..|+.++..+...|. +|++.|.++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            59999999999999999999998 799999774

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.69  E-value=0.059  Score=42.15  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      ...|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            4579999999999999999999986  799999754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.65  E-value=0.057  Score=42.33  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|.|||.|..|...|..|+++|++|++.+++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            589999999999999999999999999987544

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.23  E-value=0.07  Score=42.49  Aligned_cols=31  Identities=19%  Similarity=0.414  Sum_probs=27.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~   54 (407)
                      .+.|||.|+-|.+.|..|.++|+  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            58999999999999999999996  67778875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.11  E-value=0.064  Score=42.78  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|+|+|+|-.|+.++..+...|.+|++++.++.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            589999999999998888788999999998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.09  E-value=0.059  Score=42.78  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|+|+|+|..|+.++..+...|.+|+++++++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            59999999999999999988999999998763

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.075  Score=41.57  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .+||+|.|-.|...+..|.+.|++|+|+|.+.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            48999999999999999999999999999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.06  E-value=0.067  Score=41.52  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      .|.|||+|..|.++|..|+..|. +++++|.+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            68999999999999999999886 899999755

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.082  Score=43.46  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             CCcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccC
Q 015413           20 PTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        20 ~~~~DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      |.+-.|+|+| +|..|...+..|.++|++|+++-|+
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            3445699999 5999999999999999999999775

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.86  E-value=0.074  Score=39.46  Aligned_cols=50  Identities=12%  Similarity=0.104  Sum_probs=36.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEE-eCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+..++.|.++++++.|+++.    ++..+... ..+++++.||.||+
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~----~~~~~~~~~~~~~~~i~~D~vi~  112 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE----NGCLLANDGKGGQLRLEADRVLV  112 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE----TTEEEEECSSSCCCEECCSCEEE
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc----CCeEEEEEcCCCeEEEEcCEEEE
Confidence            5678888888899999999999999984    34322222 12235799999985

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.76  E-value=0.092  Score=40.76  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      .|.|||+|..|.++|+.|+.+|.  .+.++|.+.
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            58999999999999999999987  799998663

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.65  E-value=0.096  Score=40.58  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      .|.|||+|..|.++|+.|...|.  .+.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            68999999999999999999987  799999765

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=91.54  E-value=0.32  Score=40.67  Aligned_cols=52  Identities=19%  Similarity=0.123  Sum_probs=37.5

Q ss_pred             HHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCC
Q 015413          287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPG  340 (407)
Q Consensus       287 r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~~  340 (407)
                      +.+...-..-.....|..+..+  ++++++|++.+|.+++|+.||++.-..+..
T Consensus        75 ~~l~~~~nL~i~q~~V~dli~e--~~~v~gV~t~~G~~~~AkaVILtTGTFL~G  126 (230)
T d2cula1          75 YLLEGLRPLHLFQATATGLLLE--GNRVVGVRTWEGPPARGEKVVLAVGSFLGA  126 (230)
T ss_dssp             HHHHTCTTEEEEECCEEEEEEE--TTEEEEEEETTSCCEECSEEEECCTTCSSC
T ss_pred             HHHhhhcCHHHHhccceeeEec--ccceeeEEeccccEEEEeEEEEccCcceee
Confidence            3333333333446678888887  788999999999999999999766555553

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.27  E-value=0.1  Score=40.86  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ++.|||+|.-|.+.|..|.++|++|.|.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58999999999999999999999999998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.17  Score=37.30  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ....|.|||+|=-|-..|....+-|++|.++|.+..
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            345799999999999999999999999999998754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.22  E-value=0.13  Score=40.94  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ..+|+|+|+|=++-++++.|++.|.+|.|+-|+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            457999999999999999999999999999765

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.22  E-value=0.27  Score=42.95  Aligned_cols=56  Identities=14%  Similarity=0.049  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHhcCc--EEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 015413          280 ELPQAFCRRAAVKGC--LYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (407)
Q Consensus       280 ~l~~al~r~~~~~Gg--~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~  336 (407)
                      ++.+-|.+.++.++-  .|++|+.|+++..++ +...+.|++.++++++||.||+....
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de-~~~~W~V~~~~~~~~~~~~~i~atG~  143 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDE-ATNTWTVDTNHGDRIRARYLIMASGQ  143 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEET-TTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEec-CCCceeeccccccccccceEEEeecc
Confidence            444445555555554  599999999999873 44457899999999999999964443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.29  Score=36.61  Aligned_cols=53  Identities=13%  Similarity=-0.016  Sum_probs=38.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCc-EEEEEeCCCc------EEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLASGQ------DILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~G~------~i~Ad~VI~  332 (407)
                      .++++.+.+..++.|.++++|+.|++|..+ +++. +..+...+|+      .+.||.||+
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~  122 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKT-LSGLEVSMVTAVPGRLPVMTMIPDVDCLLW  122 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEE-TTEEEEEEEECCTTSCCEEEEEEEESEEEE
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeEEEEEEEccCCcCcCccccccCCEEEE
Confidence            568888889889999999999999999886 2442 2223333443      367899884

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=91.19  E-value=0.091  Score=40.95  Aligned_cols=32  Identities=22%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      .|.|||+|..|.++|+.|...|.  .+.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            58999999999999999998885  788888764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.98  E-value=0.13  Score=39.83  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      +|.|||+|--|.+.|..|+..|.  ++.++|.+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            58999999999999999999984  899999876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.73  E-value=0.11  Score=41.72  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             EEEECCChhHHHHHHHHhhCC-CeEEEEccCCC
Q 015413           25 LIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (407)
Q Consensus        25 VvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~~   56 (407)
                      |+|+|+|-.||.+...+...| .+|.++|.++.
T Consensus        33 VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          33 CVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            899999999999999999999 68999998764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.34  E-value=0.14  Score=39.73  Aligned_cols=32  Identities=19%  Similarity=0.116  Sum_probs=27.6

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGa-Gl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      .|.|||| |..|.++|..|+..|.  .+.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            5899996 9999999999999986  588888753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.24  E-value=0.1  Score=42.03  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (407)
                      .|+|+|+|..|+.++..+...|. +|.+.|.++.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEEEECCCccchhheecccccccccccccccccc
Confidence            58999999999999999999996 7999988653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.05  E-value=0.15  Score=39.62  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGa-Gl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      +|.|||| |..|.++|..|+..|.  .+.++|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5999996 9999999999999994  899998763

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.15  Score=40.40  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .|+|+|+|-.|+.++..+...|.+|++++.++.
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            599999999999999888889999999987643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.53  E-value=0.15  Score=42.31  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ...+|+|||+|-+|.-+|..|++++.++.++=++
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4468999999999999999999999998888665

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=0.28  Score=36.41  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=30.9

Q ss_pred             cccEEEECCC-----------hhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTG-----------LPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaG-----------l~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ...|+|||+|           .++..|+..|.+.|++|+++--|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            3479999999           4789999999999999999988865

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.51  E-value=0.16  Score=39.31  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      +|.|||+|..|.++|+.|+.+|.  .+.++|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            68999999999999999998885  699998653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=89.48  E-value=0.24  Score=43.06  Aligned_cols=31  Identities=10%  Similarity=0.026  Sum_probs=25.7

Q ss_pred             EEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           25 LIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        25 VvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ++|-| +|=-|.++|..|+++|.+|++.+++.
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            55555 56678999999999999999999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.47  E-value=0.17  Score=39.88  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      .|+|+|+|-.|+.++..+...|.+|.+.+.++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            58999999999999999999999999988654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.46  E-value=0.23  Score=37.03  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=36.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      .++.+.+.+..++.|.++++|+.|+++..   +    +|. .++++++||.||+
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~---~----~v~-~~~~~i~~D~vi~  117 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE---E----GVL-TNSGFIEGKVKIC  117 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS---S----EEE-ETTEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC---C----EEE-eCCCEEECCEEEE
Confidence            46777788888899999999999999842   2    343 5888999999984

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.99  E-value=0.19  Score=43.13  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=31.2

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      +..|+|+|| |.-|...+..|.++|++|.++.++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            457999996 99999999999999999999998643

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=88.87  E-value=0.21  Score=39.56  Aligned_cols=33  Identities=27%  Similarity=0.235  Sum_probs=29.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (407)
                      ..+|+|+|+|=++-++++.|.+.|. +|.|+-|+
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            3579999999999999999999995 79998765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.46  E-value=0.17  Score=43.21  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|.|| |+-|...+..|.++|++|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            35999997 9999999999999999999998865

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.45  E-value=0.2  Score=38.95  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (407)
                      ++.+||+|.-|.+.|..|.++| ++|.+.+++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5899999999999999888777 9999998864

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.34  E-value=0.27  Score=38.29  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=28.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      ..|.|||+|..|.++|+.|...+. ++.++|.+.
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            379999999999999999998884 788898754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.33  E-value=0.18  Score=40.32  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=28.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      -.|+|+|+|-.|+.++..+...|. +|++.|.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            369999999999999999998996 799998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.13  E-value=0.2  Score=40.93  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=26.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      .|+|+|+|..||.++..+...|. +|.+.|.++
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            79999999999999988876665 788888654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.09  E-value=0.34  Score=36.40  Aligned_cols=35  Identities=20%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             cccEEEECCCh-----------hHHHHHHHHhhCCCeEEEEccCCC
Q 015413           22 AFDLIVIGTGL-----------PESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl-----------~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      .-.|+|||+|.           ++..|+.+|.+.|++|+++-.|+.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            35799999995           789999999999999999998875

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=0.18  Score=41.73  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             HhcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 015413          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (407)
Q Consensus       290 ~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (407)
                      ++.|.++++++.|++|..+  +.   .|++++|+++.+|.||+
T Consensus        94 ~~~gI~~~~g~~V~~id~~--~~---~V~l~dG~~i~~d~lVi  131 (213)
T d1m6ia1          94 ENGGVAVLTGKKVVQLDVR--DN---MVKLNDGSQITYEKCLI  131 (213)
T ss_dssp             TTCEEEEEETCCEEEEEGG--GT---EEEETTSCEEEEEEEEE
T ss_pred             HHCCeEEEeCCEEEEeecc--Cc---eeeeccceeeccceEEE
Confidence            5688999999999999654  33   57889999999999884

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.70  E-value=0.25  Score=37.99  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~--~VlvlE~~~   55 (407)
                      +|.|||+|.-|.++|..|+..|.  .+.++|.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            68999999999999999998874  799999764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.58  E-value=0.38  Score=42.86  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +...|+|.| +|+-|...+..|.++|++|++++++.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            445699998 89999999999999999999998653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.50  E-value=0.27  Score=39.29  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (407)
                      .|+|+|+|--|+.++..+...|. +|++.|.++.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            59999999999999999999997 6778888654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.28  Score=38.61  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      ..|+|||.|--|-..|..|+..|-+|+|.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            469999999999999999999999999999975

>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.28  Score=35.55  Aligned_cols=22  Identities=14%  Similarity=0.105  Sum_probs=19.0

Q ss_pred             CCceEEEEEEEeCCCCCCCCCc
Q 015413          361 NKGKVARGICITRSSLKPDLSN  382 (407)
Q Consensus       361 ~~g~~~k~i~i~~~p~~~~~~~  382 (407)
                      |||.+.|+++.|++|||++.+.
T Consensus         1 pmG~~~Kv~l~f~~~FW~~~~~   22 (112)
T d2v5za2           1 PLGSVIKCIVYYKEPFWRKKDY   22 (112)
T ss_dssp             CBCCEEEEEEECSSCGGGGGTE
T ss_pred             CchheEEEEEEcCCCCCCCCCc
Confidence            5999999999999999975544

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=86.72  E-value=0.81  Score=39.93  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCeEEEEccCCCCCCcc
Q 015413           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (407)
Q Consensus        20 ~~~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~~~~GG~~   61 (407)
                      ...|||||||+|++||+||+.|+++|++|+||||+...||.+
T Consensus         3 ~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S   44 (336)
T d2bs2a2           3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (336)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             ceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCch
Confidence            346899999999999999999999999999999998777643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.39  E-value=0.45  Score=38.38  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=30.5

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCC
Q 015413           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (407)
Q Consensus        21 ~~~DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~   55 (407)
                      +...|+|.| +|-.|..+|..|++.|.+|+++.++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            345688888 68999999999999999999998874

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.33  E-value=0.48  Score=42.23  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=35.1

Q ss_pred             cCCcchHHHHHHHHHHhcC-cEEEeCCceeEEEEecCCCcEEEEEe--CC--C-----cEEEcCEEEEC
Q 015413          275 IYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL--AS--G-----QDILSHKLVLD  333 (407)
Q Consensus       275 ~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~--~~--G-----~~i~Ad~VI~~  333 (407)
                      .++......++...+...| .+|++++.|++|+.+  +++.++|..  .+  +     ++++||.||+.
T Consensus       218 ~~~k~s~~~~~L~~a~~~g~~~i~t~~~V~~I~~~--~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILa  284 (370)
T d3coxa1         218 NAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPA--TGSGYSVTMEQIDEQGNVVATKVVTADRVFFA  284 (370)
T ss_dssp             SSSBCCGGGTHHHHHHHTTCEEEECSEEEEEEEEC--SSSSEEEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             cccccChHHHHHHHHHhCCCcEEEecCcEEEEEEc--CCCeEEEEEEEeCCccceeeEEEEECCEEEEe
Confidence            4444444444334445555 699999999999997  343334432  22  2     25889999953

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.78  E-value=0.37  Score=38.24  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=27.6

Q ss_pred             EEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413           25 LIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (407)
Q Consensus        25 VvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (407)
                      |+|+|+|-.|++++..+++.| .+|.+.+.++
T Consensus        32 VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          32 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            899999999999999999998 5888888765

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=85.47  E-value=0.4  Score=41.22  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=29.7

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      -.|+|+|| |.-|...+..|.++|++|+++-++..
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            35999995 99999999999999999999977533

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.96  E-value=0.62  Score=40.95  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=37.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCCceeEEEEecCCCcEEEEEeCC---Cc---EEEcCEEEE-CCCC
Q 015413          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---GQ---DILSHKLVL-DPSF  336 (407)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G~---~i~Ad~VI~-~p~~  336 (407)
                      .++-+-|...+...+..|++|+.|++|..+  +++ +.|++.+   ++   +..||.||+ +-.+
T Consensus       113 ~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~--~~~-w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         113 HTIQEYQRIYAQPLLPFIKLATDVLDIEKK--DGS-WVVTYKGTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             HHHHHHHHHHHGGGGGGEECSEEEEEEEEE--TTE-EEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHHHhhhcccCceEEEEEEec--CCE-EEEEEEecCCCCeEEEEEeeEEEEccccc
Confidence            345555666666778899999999999987  666 3455433   22   357999994 4433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.96  E-value=0.34  Score=38.58  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~   55 (407)
                      .|+|+|+|-.|+.++..+...|. +|.+.|.++
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            48999999999999999998985 788888764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.83  E-value=0.41  Score=38.14  Aligned_cols=32  Identities=6%  Similarity=0.252  Sum_probs=28.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ...|+|||+|=++-++++.|++.| +|.|+-|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            357999999999999999999888 89998764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.65  E-value=0.64  Score=38.28  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=27.9

Q ss_pred             cccEEEECCChhHHHHHHHHh--------------------hCC-CeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAAS--------------------ASG-KSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La--------------------~~G-~~VlvlE~~~~   56 (407)
                      .-+|||||+|-..+=+|+.|.                    +.| .+|.++-++..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            358999999999999999887                    455 46888877643

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.63  E-value=0.41  Score=39.87  Aligned_cols=35  Identities=11%  Similarity=0.077  Sum_probs=29.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--------------------C-CeEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASAS--------------------G-KSVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~--------------------G-~~VlvlE~~~~   56 (407)
                      .-+|||||+|-..+=+|+.|.|.                    | .+|.++-++..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            45899999999999999999984                    4 68999988754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.35  E-value=0.48  Score=37.42  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=27.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (407)
Q Consensus        24 DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (407)
                      -|+|+|+|-.|+.++..+++.|- +|++.+.++.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            38889999999999999888875 6888888753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.33  E-value=0.34  Score=38.34  Aligned_cols=33  Identities=15%  Similarity=0.181  Sum_probs=27.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G-~~VlvlE~~~   55 (407)
                      -.|+|+|+|..|+.++..+...| ..|++.+.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            35999999999999998887777 5778888875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=84.32  E-value=0.46  Score=37.70  Aligned_cols=33  Identities=6%  Similarity=0.175  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCeEEEEccC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~~VlvlE~~   54 (407)
                      ...|+|+|+|=++-++++.|.+.+.+|.|+-|+
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            456999999999999999999999999999776

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.80  E-value=0.51  Score=36.33  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=26.0

Q ss_pred             cEEEEC-CChhHHHHHHHHhh-C--CCeEEEEccCC
Q 015413           24 DLIVIG-TGLPESVISAAASA-S--GKSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIG-aGl~GL~aA~~La~-~--G~~VlvlE~~~   55 (407)
                      +|.||| +|..|.++|..|+. .  +..+.++|.++
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            689999 69999999998864 3  57899998643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.73  E-value=0.57  Score=35.94  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=27.0

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCC--eEEEEccC
Q 015413           24 DLIVIG-TGLPESVISAAASASGK--SVLHLDPN   54 (407)
Q Consensus        24 DVvVIG-aGl~GL~aA~~La~~G~--~VlvlE~~   54 (407)
                      .|.||| +|..|.++|+.|..+|.  .+.++|-+
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            589999 69999999999999986  68888853

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.31  E-value=0.69  Score=38.71  Aligned_cols=48  Identities=17%  Similarity=0.180  Sum_probs=36.6

Q ss_pred             CCCCCCcccEEEECCCh-hHHHHHHHHhhCCCeEEEEccCCCCCCcccccc
Q 015413           16 PPIEPTAFDLIVIGTGL-PESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (407)
Q Consensus        16 ~~~~~~~~DVvVIGaGl-~GL~aA~~La~~G~~VlvlE~~~~~GG~~~t~~   65 (407)
                      |+++.+  -++|-||+= -|...|..|+++|.+|.+.+++..-+.....+.
T Consensus         3 psl~gK--~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~   51 (237)
T d1uzma1           3 PPFVSR--SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVE   51 (237)
T ss_dssp             CCCCCC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEE
T ss_pred             CCCCCC--EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEE
Confidence            566543  367777764 688999999999999999999887776655443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.20  E-value=0.4  Score=37.76  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=27.6

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCC-CeEEEEccCC
Q 015413           24 DLIVIG-TGLPESVISAAASASG-KSVLHLDPNP   55 (407)
Q Consensus        24 DVvVIG-aGl~GL~aA~~La~~G-~~VlvlE~~~   55 (407)
                      .|+|+| +|..|+.++..+...| .+|.+.+.++
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccch
Confidence            599999 5999999998888888 5899999874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.61  E-value=0.29  Score=34.34  Aligned_cols=31  Identities=13%  Similarity=0.126  Sum_probs=22.8

Q ss_pred             EEEECCChhHHHH-HHHHhhCCCeEEEEccCC
Q 015413           25 LIVIGTGLPESVI-SAAASASGKSVLHLDPNP   55 (407)
Q Consensus        25 VvVIGaGl~GL~a-A~~La~~G~~VlvlE~~~   55 (407)
                      |=+||-|=+|.++ |..|.++|++|.--|.++
T Consensus         4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            4456655555433 888999999999999764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.39  E-value=0.47  Score=37.59  Aligned_cols=33  Identities=21%  Similarity=0.240  Sum_probs=26.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCeEE-EEccCC
Q 015413           23 FDLIVIGTGLPESVISAAASASGKSVL-HLDPNP   55 (407)
Q Consensus        23 ~DVvVIGaGl~GL~aA~~La~~G~~Vl-vlE~~~   55 (407)
                      -.|+|+|+|-.|+.++..+...|.+++ +.+.++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            469999999999999988888888654 556543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=82.35  E-value=0.77  Score=32.50  Aligned_cols=34  Identities=15%  Similarity=0.043  Sum_probs=28.0

Q ss_pred             cccEEEECCChhHHHH-HHHHhhCCCeEEEEccCC
Q 015413           22 AFDLIVIGTGLPESVI-SAAASASGKSVLHLDPNP   55 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~a-A~~La~~G~~VlvlE~~~   55 (407)
                      ...+-+||-|=+|.++ |..|.++|++|.--|.+.
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4568888877777766 999999999999998763

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=82.06  E-value=0.98  Score=35.93  Aligned_cols=35  Identities=14%  Similarity=0.284  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-eEEEEccCCC
Q 015413           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (407)
Q Consensus        22 ~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~~~   56 (407)
                      ...|+|||+|=++-++++.|.+.|. ++.++.++..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            3579999999999999999999986 6888887644

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=81.88  E-value=0.68  Score=40.36  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             hHHHHHHHHH-HhcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCcE--EEcCEEEE
Q 015413          280 ELPQAFCRRA-AVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQD--ILSHKLVL  332 (407)
Q Consensus       280 ~l~~al~r~~-~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~~--i~Ad~VI~  332 (407)
                      ++...+.+.+ +..+.+|+.+++|+++..+  +++++||..   .+|+.  +.|+.||+
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d--~g~v~Gvv~~~~~~g~~~~~~AkaVIL  191 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEec--CCcceeEEEEEcCCCcEEEEECCEEEE
Confidence            4444444433 4457899999999999987  788888753   45654  58999994

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.82  E-value=0.37  Score=36.15  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=26.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCe-EEEEccCCCC
Q 015413           21 TAFDLIVIGTGLPESVISAAASA-SGKS-VLHLDPNPFY   57 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~-~G~~-VlvlE~~~~~   57 (407)
                      ..+.|+|+|||-+|-+.+..|.+ .|++ |..+|-+...
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            35789999999999988877753 4666 4556655443

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.25  E-value=0.73  Score=38.62  Aligned_cols=32  Identities=13%  Similarity=0.211  Sum_probs=25.5

Q ss_pred             EEEECC-ChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           25 LIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        25 VvVIGa-Gl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      |+|.|| +=-|++.|..|+++|++|+++++++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            355565 44789999999999999999998753

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.16  E-value=3  Score=30.49  Aligned_cols=55  Identities=7%  Similarity=0.070  Sum_probs=37.6

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCCceeEEEEecCC-CcEEEEEeCC---Cc--EEEcCEEEE
Q 015413          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLAS---GQ--DILSHKLVL  332 (407)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~~~~---G~--~i~Ad~VI~  332 (407)
                      -.++++.+.+..++.|.++++|+.|++++...++ .....|++..   ++  +..+|.|++
T Consensus        59 D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~  119 (122)
T d1h6va2          59 DQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLL  119 (122)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEE
Confidence            3568888999999999999999999999865211 1122343322   22  356899884

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.89  E-value=0.67  Score=41.19  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=26.9

Q ss_pred             EEEEC-CChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           25 LIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        25 VvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      |+|.| +|+-|...+..|.++|++|++++++..
T Consensus         4 vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~   36 (357)
T d1db3a_           4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (357)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            45778 899999999999999999999998654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=80.72  E-value=0.89  Score=35.47  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=29.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-eEEEEccC
Q 015413           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (407)
Q Consensus        21 ~~~DVvVIGaGl~GL~aA~~La~~G~-~VlvlE~~   54 (407)
                      ....|+|||+|-.|-..|..|.+.|. +|+|.-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            34579999999999999999999997 58888665

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.19  E-value=0.79  Score=40.29  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=30.2

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCeEEEEccCCC
Q 015413           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (407)
Q Consensus        23 ~DVvVIG-aGl~GL~aA~~La~~G~~VlvlE~~~~   56 (407)
                      ..|+|.| +|+-|...+..|.++|++|..++++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4689999 789999999999999999999997643