Citrus Sinensis ID: 015434

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MQSAAAFTAAPNLPLLKPRRLSANHGPCHVVLCSKRHDSNVVPPSPSAFPPIRRSWSLSSTPSSMFRPWTAVPLRDPDTTGRSQATAVPESAGGEEHQTTELSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRPKVSSTQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAKTA
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccc
ccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEEHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccc
mqsaaaftaapnlpllkprrlsanhgpchvvlcskrhdsnvvppspsafppirrswslsstpssmfrpwtavplrdpdttgrsqatavpesaggeehqtTELSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFnlyrpkvsstqlAAILPLALVHTLGnlftnmslgKVAVSFTHTIKATEPFFSVLLSAMflgefptlwvvgslipimgGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLimegvtftpAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQrvspvthsvgnCVKRVVVIVSSVMffrtpvsainAFGTGIALAGVFLYSRVkrikpkakta
mqsaaaftaapnlpllkprRLSANHGPCHVVLCskrhdsnvvppspsafppirrsWSLSSTPSSMFRPWTAvplrdpdttgrsqatavpesaggeehqttELSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRPKVSSTQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLysrvkrikpkakta
MQSAAAFTAAPNLPLLKPRRLSANHGPCHVVLCSKRHDSNVVPPSPSAFPPIRRswslsstpssMFRPWTAVPLRDPDTTGRSQATAVPESAGGEEHQTTELSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTvlvlllWTFNLYRPKVSSTQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCvkrvvvivssvMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAKTA
************************HGPCHVVLCS*********************************************************************RKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRPKVSSTQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVKR********
********************************************************************************************************KIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRPKVSSTQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVN**EALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRV**********
********AAPNLPLLKPRRLSANHGPCHVVLCSKRHDSNVVPPSPSAFPPIRRSWSLSSTPSSMFRPWTAVPLRD************************ELSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRPKVSSTQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAKTA
**********PNLPL************************************************************************************TELSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRPKVSSTQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVKRIK******
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
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MQSAAAFTAAPNLPLLKPRRLSANHGPCHVVLCSKRHDSNVVPPSPSAFPPIRRSWSLSSTPSSMFRPWTAVPLRDPDTTGRSQATAVPESAGGEEHQTTELSRKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLYRPKVSSTQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAKTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
Q8RXN3408 Phosphoenolpyruvate/phosp yes no 0.990 0.987 0.679 1e-147
P52178402 Triose phosphate/phosphat N/A no 0.972 0.985 0.673 1e-146
Q84QU8407 Phosphoenolpyruvate/phosp yes no 0.921 0.921 0.629 1e-133
Q69VR7408 Phosphoenolpyruvate/phosp no no 0.746 0.745 0.763 1e-132
Q5VQL3393 Phosphoenolpyruvate/phosp no no 0.710 0.735 0.658 1e-110
Q8H0T6383 Phosphoenolpyruvate/phosp no no 0.788 0.838 0.585 1e-101
Q9LF61417 Xylulose 5-phosphate/phos no no 0.862 0.841 0.377 9e-61
Q9M5A9388 Glucose-6-phosphate/phosp no no 0.769 0.806 0.4 6e-56
P21727402 Triose phosphate/phosphat N/A no 0.788 0.798 0.388 3e-54
Q94B38388 Glucose-6-phosphate/phosp no no 0.742 0.778 0.388 9e-54
>sp|Q8RXN3|PPT1_ARATH Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PPT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  523 bits (1347), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 280/412 (67%), Positives = 331/412 (80%), Gaps = 9/412 (2%)

Query: 1   MQSAAAFTAAPNLPLLKPRRLSANHGPCHVVLCSKRHDSNVVPPSPSAFPPIRRSWSLSS 60
           MQS+A F+ +P+LPLLKPRRLS  H P  +   +   D NV P   S     RRSW L+S
Sbjct: 1   MQSSAVFSLSPSLPLLKPRRLSLRHHP--ITTAASSSDLNVSPNVVSIPSLSRRSWRLAS 58

Query: 61  TPSSMFRPWTAVPL---RDPDTTG-RSQATAVPESAGGEEHQTTELSRKIEVLLLMGLWY 116
           + S + R W+ VP       DT   R+ ATAVPESA  E   + +L++ +E+ LL  +WY
Sbjct: 59  SDSPL-RAWSGVPSPISHSLDTNRFRTAATAVPESAE-EGDNSGKLTKVLELGLLFAMWY 116

Query: 117 FFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLY-RPKVSSTQLAAILPL 175
            FNI FNIYNKQVLK    P+TVT  QF VG+VL+ ++W  NLY RPK+S  QLAAILPL
Sbjct: 117 LFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLITIMWVLNLYKRPKISGAQLAAILPL 176

Query: 176 ALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGG 235
           A+VHTLGNLFTNMSLGKV+VSFTHTIKA EPFFSVLLSAMFLGE PT WV+G+++PI+GG
Sbjct: 177 AVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVLLSAMFLGEKPTPWVLGAIVPIVGG 236

Query: 236 VALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFIL 295
           VALAS++EVSFNWAGF SAMASNLTNQSRNVLSKKVMV K+++LDNITLFSIIT+MS +L
Sbjct: 237 VALASISEVSFNWAGFSSAMASNLTNQSRNVLSKKVMVKKDDSLDNITLFSIITLMSLVL 296

Query: 296 MIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSV 355
           M PVT   EG+ FTP+Y+QSAG+N+K++Y +SLIAA+C+HAYQQVSYMIL RVSPVTHSV
Sbjct: 297 MAPVTFFTEGIKFTPSYIQSAGVNVKQIYTKSLIAALCFHAYQQVSYMILARVSPVTHSV 356

Query: 356 GNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAKTA 407
           GNCVKRVVVIVSSV+FF+TPVS +NAFGTGIALAGVFLYSRVK IKPK KTA
Sbjct: 357 GNCVKRVVVIVSSVIFFKTPVSPVNAFGTGIALAGVFLYSRVKGIKPKPKTA 408
Phosphoenolpyruvate/phosphate translocator that transports phosphoenolpyruvate (PEP), 2-phosphoglycerate, 3-phosphoglycerate and dihydroxyacetone phosphate. Imports PEP to the chloroplast stroma as one substrate of the shikimate pathway, from which aromatic amino acids and a variety of secondary products derive. Required for correct leaf mesophyll cell development and expression of chlorophyll a/b binding protein 3 (CAB3).
Arabidopsis thaliana (taxid: 3702)
>sp|P52178|TPT2_BRAOB Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1 Back     alignment and function description
>sp|Q84QU8|PPT2_ORYSJ Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT2 PE=2 SV=1 Back     alignment and function description
>sp|Q69VR7|PPT1_ORYSJ Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT1 PE=2 SV=1 Back     alignment and function description
>sp|Q5VQL3|PPT3_ORYSJ Phosphoenolpyruvate/phosphate translocator 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H0T6|PPT2_ARATH Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=PPT2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LF61|XPT_ARATH Xylulose 5-phosphate/phosphate translocator, chloroplastic OS=Arabidopsis thaliana GN=XPT PE=2 SV=1 Back     alignment and function description
>sp|Q9M5A9|GPT1_ARATH Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1 Back     alignment and function description
>sp|P21727|TPT_PEA Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q94B38|GPT2_ARATH Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
255540643417 Triose phosphate/phosphate translocator, 0.987 0.964 0.708 1e-154
118482479414 unknown [Populus trichocarpa] 0.948 0.932 0.706 1e-150
224121710330 predicted protein [Populus trichocarpa] 0.793 0.978 0.803 1e-147
224135823416 predicted protein [Populus trichocarpa] 0.977 0.956 0.696 1e-147
118484795416 unknown [Populus trichocarpa] 0.977 0.956 0.696 1e-147
118196907407 plastid phosphoenolpyruvate/phosphate tr 0.985 0.985 0.682 1e-147
15242801408 Glucose-6-phosphate/phosphate translocat 0.990 0.987 0.679 1e-146
21554233408 phosphate/phosphoenolpyruvate translocat 0.990 0.987 0.677 1e-145
1778141408 phosphate/phosphoenolpyruvate translocat 0.990 0.987 0.677 1e-145
7546829408 phosphate/phosphoenolpyruvate translocat 0.990 0.987 0.679 1e-145
>gi|255540643|ref|XP_002511386.1| Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis] gi|223550501|gb|EEF51988.1| Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 299/422 (70%), Positives = 336/422 (79%), Gaps = 20/422 (4%)

Query: 1   MQSAAAFT----AAPNLPLLKPRR----LSANHGPCHV----VLCSKRHDSNVVPPSPSA 48
           MQSAA FT    + P+LPLLKPR     ++    P  +        KR D +  P +   
Sbjct: 1   MQSAA-FTLSSPSCPSLPLLKPRSSRPLINPRFDPISIRASSSSSLKRQDLDT-PHNNVV 58

Query: 49  FPPIRRSWSLSSTPSSMFRPWTAVPLRDPDTTGRSQ--ATAVPESAGGEEHQTTELSRKI 106
           FP    S S +S+  S+ RPW   PL     T R Q  ATAVPESAG E  +++ + + +
Sbjct: 59  FPRRSWSLSSASSSPSLLRPWN--PLVSDRETERFQVKATAVPESAG-ESEKSSSMIKTL 115

Query: 107 EVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLY-RPKVS 165
           E+ LL GLWY FNI FNIYNKQVLKV+  PVT+T  QF VGTVLV L+WTFNLY RPK++
Sbjct: 116 ELGLLFGLWYLFNIYFNIYNKQVLKVFPNPVTITLAQFAVGTVLVTLMWTFNLYKRPKIT 175

Query: 166 STQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWV 225
             QLAAILPLA VHTLGNLFTNMSLGKVAVSFTHTIKA EPFFSV+LSAMFLGE PT+WV
Sbjct: 176 LAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEMPTIWV 235

Query: 226 VGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLF 285
           VGSL+PIMGGVALAS TE SFNWAGFWSAMASNLTNQSRNVLSKKVMV KE+++DNITLF
Sbjct: 236 VGSLVPIMGGVALASATEASFNWAGFWSAMASNLTNQSRNVLSKKVMVKKEDSIDNITLF 295

Query: 286 SIITVMSFILMIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMIL 345
           SIIT+MSF L+ PV LIMEGV FTPAYLQSAGLN+KEVY+RSL+AA+C+HAYQQVSYMIL
Sbjct: 296 SIITIMSFFLLTPVALIMEGVKFTPAYLQSAGLNVKEVYIRSLLAALCFHAYQQVSYMIL 355

Query: 346 QRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAK 405
           QRVSPVTHSVGNCVKRVVVIVSSV+FFRTPVS IN+ GTGIALAGVFLYSRVKRIKPK K
Sbjct: 356 QRVSPVTHSVGNCVKRVVVIVSSVLFFRTPVSPINSLGTGIALAGVFLYSRVKRIKPKPK 415

Query: 406 TA 407
           TA
Sbjct: 416 TA 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118482479|gb|ABK93162.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224121710|ref|XP_002318653.1| predicted protein [Populus trichocarpa] gi|222859326|gb|EEE96873.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224135823|ref|XP_002322169.1| predicted protein [Populus trichocarpa] gi|222869165|gb|EEF06296.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484795|gb|ABK94265.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118196907|gb|ABK78670.1| plastid phosphoenolpyruvate/phosphate translocator [Brassica napus] gi|187940348|gb|ACD39395.1| plastid phosphoenolpyruvate/phosphate translocator [Brassica napus] Back     alignment and taxonomy information
>gi|15242801|ref|NP_198317.1| Glucose-6-phosphate/phosphate translocator-like protein [Arabidopsis thaliana] gi|75158882|sp|Q8RXN3.1|PPT1_ARATH RecName: Full=Phosphoenolpyruvate/phosphate translocator 1, chloroplastic; Short=AtPPT1; AltName: Full=Protein CAB UNDEREXPRESSED 1; Flags: Precursor gi|19423928|gb|AAL87271.1| putative phosphate/phosphoenolpyruvate translocator precursor protein [Arabidopsis thaliana] gi|22136798|gb|AAM91743.1| putative phosphate/phosphoenolpyruvate translocator precursor protein [Arabidopsis thaliana] gi|332006511|gb|AED93894.1| Glucose-6-phosphate/phosphate translocator-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554233|gb|AAM63308.1| phosphate/phosphoenolpyruvate translocator precursor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|1778141|gb|AAB40646.1| phosphate/phosphoenolpyruvate translocator precursor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7546829|gb|AAF63704.1|AF209210_1 phosphate/phosphoenolpyruvate translocator [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
TAIR|locus:2145944408 CUE1 "CAB UNDEREXPRESSED 1" [A 0.990 0.987 0.633 3.9e-131
UNIPROTKB|Q69VR7408 PPT1 "Phosphoenolpyruvate/phos 0.800 0.799 0.693 9.1e-116
UNIPROTKB|Q84QU8407 PPT2 "Phosphoenolpyruvate/phos 0.985 0.985 0.585 2.4e-115
UNIPROTKB|Q5VQL3393 PPT3 "Phosphoenolpyruvate/phos 0.766 0.793 0.580 4.2e-95
TAIR|locus:2084203383 PPT2 "phosphoenolpyruvate (pep 0.788 0.838 0.560 1.8e-94
TAIR|locus:2151381417 AT5G17630 "AT5G17630" [Arabido 0.786 0.767 0.370 9.9e-55
TAIR|locus:2160175388 GPT1 "glucose 6-phosphate/phos 0.769 0.806 0.375 5.5e-54
TAIR|locus:2036778388 GPT2 "glucose-6-phosphate/phos 0.722 0.757 0.376 2.1e-52
TAIR|locus:2161423415 APE2 "ACCLIMATION OF PHOTOSYNT 0.683 0.669 0.371 7.7e-48
GENEDB_PFALCIPARUM|PFE0410w342 PFE0410w "triose or hexose pho 0.722 0.859 0.289 2.6e-38
TAIR|locus:2145944 CUE1 "CAB UNDEREXPRESSED 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 261/412 (63%), Positives = 309/412 (75%)

Query:     1 MQSAAAFTAAPNLPLLKPRRLSANHGPCHVVLCSKRHDSNVVPPSPSAFPPIRRXXXXXX 60
             MQS+A F+ +P+LPLLKPRRLS  H P  +   +   D NV  P+  + P + R      
Sbjct:     1 MQSSAVFSLSPSLPLLKPRRLSLRHHP--ITTAASSSDLNV-SPNVVSIPSLSRRSWRLA 57

Query:    61 XXXXMFRPWTAVPL---RDPDTTG-RSQATAVPESAGGEEHQTTELSRKIEVLLLMGLWY 116
                   R W+ VP       DT   R+ ATAVPESA  E   + +L++ +E+ LL  +WY
Sbjct:    58 SSDSPLRAWSGVPSPISHSLDTNRFRTAATAVPESAE-EGDNSGKLTKVLELGLLFAMWY 116

Query:   117 FFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTXXXXXXWTFNLY-RPKVSSTQLAAILPL 175
              FNI FNIYNKQVLK    P+TVT  QF VG+      W  NLY RPK+S  QLAAILPL
Sbjct:   117 LFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLITIMWVLNLYKRPKISGAQLAAILPL 176

Query:   176 ALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGG 235
             A+VHTLGNLFTNMSLGKV+VSFTHTIKA EPFFSVLLSAMFLGE PT WV+G+++PI+GG
Sbjct:   177 AVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVLLSAMFLGEKPTPWVLGAIVPIVGG 236

Query:   236 VALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFIL 295
             VALAS++EVSFNWAGF SAMASNLTNQSRNVLSKKVMV K+++LDNITLFSIIT+MS +L
Sbjct:   237 VALASISEVSFNWAGFSSAMASNLTNQSRNVLSKKVMVKKDDSLDNITLFSIITLMSLVL 296

Query:   296 MIPVTLIMEGVTFTPAYLQSAGLNLKEVYVRSLIAAICYHAYQQVSYMILQRVSPVTHSV 355
             M PVT   EG+ FTP+Y+QSAG+N+K++Y +SLIAA+C+HAYQQVSYMIL RVSPVTHSV
Sbjct:   297 MAPVTFFTEGIKFTPSYIQSAGVNVKQIYTKSLIAALCFHAYQQVSYMILARVSPVTHSV 356

Query:   356 GNCXXXXXXXXXXXMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAKTA 407
             GNC           +FF+TPVS +NAFGTGIALAGVFLYSRVK IKPK KTA
Sbjct:   357 GNCVKRVVVIVSSVIFFKTPVSPVNAFGTGIALAGVFLYSRVKGIKPKPKTA 408
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015297 "antiporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0009528 "plastid inner membrane" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0015120 "phosphoglycerate transmembrane transporter activity" evidence=IDA
GO:0015121 "phosphoenolpyruvate:phosphate antiporter activity" evidence=IDA
GO:0015713 "phosphoglycerate transport" evidence=IDA
GO:0015714 "phosphoenolpyruvate transport" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
UNIPROTKB|Q69VR7 PPT1 "Phosphoenolpyruvate/phosphate translocator 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84QU8 PPT2 "Phosphoenolpyruvate/phosphate translocator 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VQL3 PPT3 "Phosphoenolpyruvate/phosphate translocator 3, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2084203 PPT2 "phosphoenolpyruvate (pep)/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151381 AT5G17630 "AT5G17630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160175 GPT1 "glucose 6-phosphate/phosphate translocator 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036778 GPT2 "glucose-6-phosphate/phosphate translocator 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161423 APE2 "ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE0410w PFE0410w "triose or hexose phosphate / phosphate translocator, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84QU8PPT2_ORYSJNo assigned EC number0.62940.92130.9213yesno
P52178TPT2_BRAOBNo assigned EC number0.67310.97290.9850N/Ano
Q8RXN3PPT1_ARATHNo assigned EC number0.67960.99010.9877yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.1560.1
SubName- Full=Putative uncharacterized protein; (416 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
TIGR00817302 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate 1e-123
PTZ00343350 PTZ00343, PTZ00343, triose or hexose phosphate/pho 3e-75
pfam03151149 pfam03151, TPT, Triose-phosphate Transporter famil 1e-38
pfam00892126 pfam00892, EamA, EamA-like transporter family 8e-08
COG0697292 COG0697, RhaT, Permeases of the drug/metabolite tr 9e-07
TIGR00950260 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Tran 0.001
>gnl|CDD|129898 TIGR00817, tpt, Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information 
 Score =  358 bits (920), Expect = e-123
 Identities = 167/300 (55%), Positives = 214/300 (71%), Gaps = 6/300 (2%)

Query: 110 LLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLY-RPKVSSTQ 168
           LL GLWYF N+ FNIYNK++L V+ +P   T     VG++  LL W+  L  R K+SS  
Sbjct: 5   LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSAL 64

Query: 169 LAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGS 228
           L  +LP+A+VHT+G++ +N+SL KVAVSFTHTIKA EPFFSV+LSA FLG+     +  S
Sbjct: 65  LKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLS 124

Query: 229 LIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSII 288
           L+PI+GGVALAS TE+SFNWAGF SAM SN+T  SRN+ SKK M  K  +LD   L++ I
Sbjct: 125 LLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIK--SLDKTNLYAYI 182

Query: 289 TVMSFILMIPVTLIMEGVTFTPAYLQ--SAGLNLKEVYVRSLIAA-ICYHAYQQVSYMIL 345
           ++MS  L+ P   I EG  F P       +G+N+ ++Y  SL+AA   +H YQQV++M+L
Sbjct: 183 SIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLL 242

Query: 346 QRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVKRIKPKAK 405
            RVSP+THSVGNC+KRVVVIV S++FF T +S    FGTGIA+AGVFLYSRVK  KPK K
Sbjct: 243 GRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKPK 302

The 6-8 TMS Triose-phosphate Transporter (TPT) Family (TC 2.A.7.9)Functionally characterized members of the TPT family are derived from the inner envelope membranes of chloroplasts and nongreen plastids of plants. However,homologues are also present in yeast. Saccharomyces cerevisiae has three functionally uncharacterized TPT paralogues encoded within its genome. Under normal physiologicalconditions, chloroplast TPTs mediate a strict antiport of substrates, frequently exchanging an organic three carbon compound phosphate ester for inorganic phosphate (Pi).Normally, a triose-phosphate, 3-phosphoglycerate, or another phosphorylated C3 compound made in the chloroplast during photosynthesis, exits the organelle into thecytoplasm of the plant cell in exchange for Pi. However, experiments with reconstituted translocator in artificial membranes indicate that transport can also occur by achannel-like uniport mechanism with up to 10-fold higher transport rates. Channel opening may be induced by a membrane potential of large magnitude and/or by high substrateconcentrations. Nongreen plastid and chloroplast carriers, such as those from maize endosperm and root membranes, mediate transport of C3 compounds phosphorylated atcarbon atom 2, particularly phosphenolpyruvate, in exchange for Pi. These are the phosphoenolpyruvate:Pi antiporters (PPT). Glucose-6-P has also been shown to be asubstrate of some plastid translocators (GPT). The three types of proteins (TPT, PPT and GPT) are divergent in sequence as well as substrate specificity, but their substratespecificities overlap [Hypothetical proteins, Conserved]. Length = 302
>gnl|CDD|240371 PTZ00343, PTZ00343, triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family Back     alignment and domain information
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family Back     alignment and domain information
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|233205 TIGR00950, 2A78, Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
PTZ00343350 triose or hexose phosphate/phosphate translocator; 100.0
TIGR00817302 tpt Tpt phosphate/phosphoenolpyruvate translocator 100.0
KOG1441316 consensus Glucose-6-phosphate/phosphate and phosph 100.0
PLN00411358 nodulin MtN21 family protein; Provisional 99.97
KOG1444314 consensus Nucleotide-sugar transporter VRG4/SQV-7 99.97
PF08449303 UAA: UAA transporter family; InterPro: IPR013657 T 99.96
KOG1443349 consensus Predicted integral membrane protein [Fun 99.96
PRK11272292 putative DMT superfamily transporter inner membran 99.95
PRK11689295 aromatic amino acid exporter; Provisional 99.95
KOG1442347 consensus GDP-fucose transporter [Carbohydrate tra 99.94
PRK10532293 threonine and homoserine efflux system; Provisiona 99.94
PRK11453299 O-acetylserine/cysteine export protein; Provisiona 99.94
PF06027334 DUF914: Eukaryotic protein of unknown function (DU 99.94
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 99.93
PRK15430296 putative chloramphenical resistance permease RarD; 99.93
TIGR03340281 phn_DUF6 phosphonate utilization associated putati 99.88
KOG1580337 consensus UDP-galactose transporter related protei 99.88
COG5070309 VRG4 Nucleotide-sugar transporter [Carbohydrate tr 99.88
KOG1581327 consensus UDP-galactose transporter related protei 99.86
KOG2765416 consensus Predicted membrane protein [Function unk 99.85
KOG4510346 consensus Permease of the drug/metabolite transpor 99.85
COG0697292 RhaT Permeases of the drug/metabolite transporter 99.84
TIGR00688256 rarD rarD protein. This uncharacterized protein is 99.81
KOG1582367 consensus UDP-galactose transporter related protei 99.79
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 99.78
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 99.75
TIGR00776290 RhaT RhaT L-rhamnose-proton symporter family prote 99.73
PF04142244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 99.71
KOG3912372 consensus Predicted integral membrane protein [Gen 99.71
KOG1583330 consensus UDP-N-acetylglucosamine transporter [Car 99.7
COG2962293 RarD Predicted permeases [General function predict 99.7
KOG2234345 consensus Predicted UDP-galactose transporter [Car 99.66
KOG2766336 consensus Predicted membrane protein [Function unk 99.53
KOG4314290 consensus Predicted carbohydrate/phosphate translo 99.36
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 99.22
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 99.17
COG2510140 Predicted membrane protein [Function unknown] 99.15
PF13536113 EmrE: Multidrug resistance efflux transporter 99.03
PF06800269 Sugar_transport: Sugar transport protein; InterPro 98.98
PF00892126 EamA: EamA-like transporter family; InterPro: IPR0 98.98
COG2510140 Predicted membrane protein [Function unknown] 98.91
TIGR00950260 2A78 Carboxylate/Amino Acid/Amine Transporter. 98.72
PRK15430 296 putative chloramphenical resistance permease RarD; 98.67
TIGR00688 256 rarD rarD protein. This uncharacterized protein is 98.65
TIGR03340 281 phn_DUF6 phosphonate utilization associated putati 98.52
PRK13499345 rhamnose-proton symporter; Provisional 98.46
PRK10532293 threonine and homoserine efflux system; Provisiona 98.38
PLN00411 358 nodulin MtN21 family protein; Provisional 98.36
PF05653300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 98.33
PRK11272292 putative DMT superfamily transporter inner membran 98.32
PRK11689295 aromatic amino acid exporter; Provisional 98.27
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.27
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 98.22
PRK11453299 O-acetylserine/cysteine export protein; Provisiona 98.11
PF03151153 TPT: Triose-phosphate Transporter family; InterPro 98.07
TIGR00817302 tpt Tpt phosphate/phosphoenolpyruvate translocator 98.0
PTZ00343 350 triose or hexose phosphate/phosphate translocator; 97.98
COG2962 293 RarD Predicted permeases [General function predict 97.94
PF13536113 EmrE: Multidrug resistance efflux transporter 97.88
TIGR00776290 RhaT RhaT L-rhamnose-proton symporter family prote 97.76
COG0697292 RhaT Permeases of the drug/metabolite transporter 97.66
PRK10452120 multidrug efflux system protein MdtJ; Provisional 97.65
COG4975288 GlcU Putative glucose uptake permease [Carbohydrat 97.64
PF08449 303 UAA: UAA transporter family; InterPro: IPR013657 T 97.6
KOG2922335 consensus Uncharacterized conserved protein [Funct 97.6
PRK02971129 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.53
PRK15051111 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl 97.5
PRK10452120 multidrug efflux system protein MdtJ; Provisional 97.45
COG5006292 rhtA Threonine/homoserine efflux transporter [Amin 97.36
PRK09541110 emrE multidrug efflux protein; Reviewed 97.34
PRK10650109 multidrug efflux system protein MdtI; Provisional 97.29
PF06800269 Sugar_transport: Sugar transport protein; InterPro 97.22
PRK09541110 emrE multidrug efflux protein; Reviewed 97.21
PRK10650109 multidrug efflux system protein MdtI; Provisional 97.2
PRK11431105 multidrug efflux system protein; Provisional 97.09
PRK13499 345 rhamnose-proton symporter; Provisional 97.05
PF04142 244 Nuc_sug_transp: Nucleotide-sugar transporter; Inte 97.04
PRK11431105 multidrug efflux system protein; Provisional 97.01
PF06027334 DUF914: Eukaryotic protein of unknown function (DU 96.99
COG2076106 EmrE Membrane transporters of cations and cationic 96.98
COG2076106 EmrE Membrane transporters of cations and cationic 96.95
KOG2234 345 consensus Predicted UDP-galactose transporter [Car 96.76
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 96.75
PF04657138 DUF606: Protein of unknown function, DUF606; Inter 96.47
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 96.27
PF05653 300 Mg_trans_NIPA: Magnesium transporter NIPA; InterPr 96.26
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 96.23
TIGR00803222 nst UDP-galactose transporter. NSTs generally appe 96.14
KOG4510346 consensus Permease of the drug/metabolite transpor 96.02
PF07857 254 DUF1632: CEO family (DUF1632); InterPro: IPR012435 95.85
COG3238150 Uncharacterized protein conserved in bacteria [Fun 95.11
PF0089393 Multi_Drug_Res: Small Multidrug Resistance protein 94.96
KOG1441316 consensus Glucose-6-phosphate/phosphate and phosph 93.53
KOG1580 337 consensus UDP-galactose transporter related protei 93.46
KOG1581327 consensus UDP-galactose transporter related protei 93.34
PF06379 344 RhaT: L-rhamnose-proton symport protein (RhaT); In 93.2
COG3238150 Uncharacterized protein conserved in bacteria [Fun 93.03
COG4975288 GlcU Putative glucose uptake permease [Carbohydrat 90.11
PF10639113 UPF0546: Uncharacterised protein family UPF0546; I 89.86
KOG2765 416 consensus Predicted membrane protein [Function unk 89.83
KOG4314 290 consensus Predicted carbohydrate/phosphate translo 85.95
KOG1444314 consensus Nucleotide-sugar transporter VRG4/SQV-7 83.31
PF08627130 CRT-like: CRT-like; InterPro: IPR013936 This regio 82.49
COG5070309 VRG4 Nucleotide-sugar transporter [Carbohydrate tr 82.34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.7e-39  Score=313.40  Aligned_cols=295  Identities=37%  Similarity=0.652  Sum_probs=254.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhccc-CCCC--CHHHHHHHHHHHHHHH
Q 015434          104 RKIEVLLLMGLWYFFNIIFNIYNKQVLKVYRFPVTVTTCQFGVGTVLVLLLWTFNLY-RPKV--SSTQLAAILPLALVHT  180 (407)
Q Consensus       104 ~~l~~~~~~~~~~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~-~~~~--~~~~~~~~~~~g~l~~  180 (407)
                      ..+++..+++.||++|+..++.||++++.+++|++++++|++++.+++.+++..+.+ +++.  .++.++.+++.|+++.
T Consensus        46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         46 FKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999998877666654433 3444  3557899999999998


Q ss_pred             HHHHHHHhhhcCcchhhHHHHhhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhheeeecccccccHHHHHHHHHHHHH
Q 015434          181 LGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVSFNWAGFWSAMASNLT  260 (407)
Q Consensus       181 ~~~~~~~~al~~~s~s~~~~i~~~~Pvft~lls~~~l~er~s~~~~~~~~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~  260 (407)
                      ..+...+.|++++++++++++++++|+|+++++++++|||++++++++++++++|+++...+|.++++.|++++++|+++
T Consensus       126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~  205 (350)
T PTZ00343        126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLG  205 (350)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999999999999999999999999988888889999999999999


Q ss_pred             HHHHHHHHHHhhhccc---cCCChhHHHHHHHHHHHHHHHHHHHHhcCccchhhhHh---h-cCCchHHHHHHHHHHHHH
Q 015434          261 NQSRNVLSKKVMVNKE---EALDNITLFSIITVMSFILMIPVTLIMEGVTFTPAYLQ---S-AGLNLKEVYVRSLIAAIC  333 (407)
Q Consensus       261 ~a~~~vl~k~~~~~~~---~~~~~~~l~~~~~~~~~l~l~p~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~  333 (407)
                      +|+|+++.|+.+++++   +++++.++..++.+++.++++|+....|+.........   . .......++..++.++++
T Consensus       206 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~  285 (350)
T PTZ00343        206 SSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVW  285 (350)
T ss_pred             HHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Confidence            9999999999986543   25778888888899999999999876765322211100   0 111223344457778999


Q ss_pred             HHHHHHHHHHHhhccChhHHhHHHHHHHHHHHHHHHHHcCCcCchhHHHHHHHHHHHHHHHHHhc
Q 015434          334 YHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVMFFRTPVSAINAFGTGIALAGVFLYSRVK  398 (407)
Q Consensus       334 ~~~~~~~~~~~l~~~s~~~~sv~~~l~~v~~iils~~~fge~~s~~~~~G~~lil~G~~ly~~~~  398 (407)
                      ++++|.+.|.++++++|+++++.+++||++++++|+++|||+++..+++|.+++++|+++|++.|
T Consensus       286 ~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        286 YYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999998763

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>KOG1443 consensus Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>KOG3912 consensus Predicted integral membrane protein [General function prediction only] Back     alignment and domain information
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2766 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown Back     alignment and domain information
>COG2510 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter Back     alignment and domain information
>PRK15430 putative chloramphenical resistance permease RarD; Provisional Back     alignment and domain information
>TIGR00688 rarD rarD protein Back     alignment and domain information
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PRK10532 threonine and homoserine efflux system; Provisional Back     alignment and domain information
>PLN00411 nodulin MtN21 family protein; Provisional Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional Back     alignment and domain information
>PRK11689 aromatic amino acid exporter; Provisional Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>PRK11453 O-acetylserine/cysteine export protein; Provisional Back     alignment and domain information
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins Back     alignment and domain information
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator Back     alignment and domain information
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional Back     alignment and domain information
>COG2962 RarD Predicted permeases [General function prediction only] Back     alignment and domain information
>PF13536 EmrE: Multidrug resistance efflux transporter Back     alignment and domain information
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein Back     alignment and domain information
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine [] Back     alignment and domain information
>KOG2922 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional Back     alignment and domain information
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional Back     alignment and domain information
>PRK10452 multidrug efflux system protein MdtJ; Provisional Back     alignment and domain information
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long Back     alignment and domain information
>PRK09541 emrE multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10650 multidrug efflux system protein MdtI; Provisional Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>PRK13499 rhamnose-proton symporter; Provisional Back     alignment and domain information
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles Back     alignment and domain information
>PRK11431 multidrug efflux system protein; Provisional Back     alignment and domain information
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information
>TIGR00803 nst UDP-galactose transporter Back     alignment and domain information
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only] Back     alignment and domain information
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins Back     alignment and domain information
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family Back     alignment and domain information
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function Back     alignment and domain information
>KOG2765 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only] Back     alignment and domain information
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT) Back     alignment and domain information
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 52/336 (15%), Positives = 105/336 (31%), Gaps = 91/336 (27%)

Query: 56  W-SLSS--TPSSMFRPWTAVPLR-DPDTTGRSQATAVPESAGGEEHQTTELSRKIEVLLL 111
           W +L +  +P ++      +  + DP+ T R       + +   + +   +  ++  LL 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------SDHSSNIKLRIHSIQAELRRLLK 239

Query: 112 MGLWYFFN---IIFNIYNKQVLKVYRF--PVTVTTCQFGVGTVL---------------- 150
                + N   ++ N+ N +    +     + +TT    V   L                
Sbjct: 240 --SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 151 --------VLLLWTFNLYRPKVSSTQLAAILPLAL----------VHTLGNLFTNMSLGK 192
                   +LL +  +  RP+    ++    P  L          + T  N + +++  K
Sbjct: 298 LTPDEVKSLLLKYL-DC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDK 354

Query: 193 VAVSFTHTIKATEPFFSVL----LSAMF--LGEFPTLWVVGSLIPIMGGVALASVTEVSF 246
           +    T  I++     +VL       MF  L  FP      + IP         +  +  
Sbjct: 355 L----TTIIES---SLNVLEPAEYRKMFDRLSVFP----PSAHIP-------TILLSL-- 394

Query: 247 NWAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFILMIPVTL---IM 303
                W  +  +      N L K  +V K+     I++ SI   +   L     L   I+
Sbjct: 395 ----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 304 EGVTFTPAY-LQSAGLNLKEVYVRSLIAAICYHAYQ 338
           +       +          + Y  S I    +H   
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKN 483

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 98.26
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 98.21
2i68_A137 Protein EMRE; transmembrane protein, small-multidr 98.16
3b5d_A110 Multidrug transporter EMRE; helical membrane prote 98.01
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure
Probab=98.26  E-value=5e-06  Score=66.07  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcCcchhhHHHH-hhhhHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhheeeeccc
Q 015434          173 LPLALVHTLGNLFTNMSLGKVAVSFTHTI-KATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTE  243 (407)
Q Consensus       173 ~~~g~l~~~~~~~~~~al~~~s~s~~~~i-~~~~Pvft~lls~~~l~er~s~~~~~~~~~~~~Gv~l~~~~~  243 (407)
                      +...+.+.+..++...++++.+.+.+..+ ..+.|+++.+++++++||+++..++++++++++|+++....+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44445677888999999999999999888 899999999999999999999999999999999999876544
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli} Back     alignment and structure
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00