Citrus Sinensis ID: 015574


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
MGGQCSKGSSKADKNNTRRSISLKSNGLQNHKLNPSPSPLEQQHKGFSSLPKPQSDDFYDGIPRFDGGLSQKSKSVRSTQAAVAKVSEVSARLGRAGTVGLGKAVDVLDTLGSSMTNLNPNNGFSGVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLVSLLILFIVFILFQLNRKPLFPLICTKI
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHcccccccccccccHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
cccEEccccccccccccccccccccccccccEEcccccccHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHcHHcHHHHHHHHHHcccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHcHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcc
mggqcskgsskadknntrrsislksnglqnhklnpspspleqqhkgfsslpkpqsddfydgiprfdgglsqksksVRSTQAAVAKVSEVSARlgragtvglGKAVDVLDTLgssmtnlnpnngfsgvgtksnELSILAFEVANTIVKGSNLMLSISESSVRQLKEVvlpaegvqnlVSKDMDELLKIFAAdkrddlkiftgevvrfgnrskdpqwhnlGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQhkrqeednpvgsqkgESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHdafgstddhfpfkgsmsnhqrlgpaGLALHYANIILQIDSLVSLLILFIVFILFqlnrkplfplictki
mggqcskgsskadknntrrsislksnglqnhKLNPSPSPLEQQHKGFSSLPKPQSDDFYDGIPRFdgglsqksksvRSTQAAVAKVSevsarlgragtvglgKAVDVLDTLGSSMTNLNPNNGFSGVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEVVLpaegvqnlvsKDMDELLKIFaadkrddlkiftgevvrfgnrskdpqwhnLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRqeednpvgsqkgeSFAILRAELKsqrkqvkilrkkslwsrsLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLVSLLILFIVFILFqlnrkplfplictki
MGGQCSKGSSKADKNNTRRSISLKSNGLQNHKLNPSPSPLEQQHKGFSSLPKPQSDDFYDGIPRFDGGLSQKSKSVRSTQAAVAKVSEVSARLGRAGTVGLGKAVDVLDTLGSSMTNLNPNNGFSGVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDslvsllilfivfilfQLNRKPLFPLICTKI
*******************************************************************************************RLGRAGTVGLGKAVDVLDTLGS**********FSGVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFE***********************************VKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGS**NHQRLGPAGLALHYANIILQIDSLVSLLILFIVFILFQLNRKPLFPLICT**
********************************************************************************************************VDVLDTL*************************LAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQ****************************KSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGS**********************ALHYANIILQIDSLVSLLILFIVFILFQLNRKPLFPLICTKI
****************TRRSISLKSNGLQNHKLNPS***************KPQSDDFYDGIPRFDGGL******************EVSARLGRAGTVGLGKAVDVLDTLGSSMTNLNPNNGFSGVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDC**************KGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLVSLLILFIVFILFQLNRKPLFPLICTKI
**************************************************************************************************VGLGKAVDVLDTLGS*****************SNELSILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQE*********GESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGST**************RLGPAGLALHYANIILQIDSLVSLLILFIVFILFQLNRKPLFPLICTKI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MGGQCSKGSSKADKNNTRRSISLKSNGLQNHKLNPSPSPLEQQHKGFSSLPKPQSDDFYDGIPRFDGGLSQKSKSVRSTQAAVAKVSEVSARLGRAGTVGLGKAVDVLDTLGSSMTNLNPNNGFSGVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKISRELIPxxxxxxxxxxxxxxxxxxxxxTAELYNELQILDRFEQDCQHKRQEEDNPVGSQKGESxxxxxxxxxxxxxxxxxxxxxSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYANIILQIDSLVSLLILFIVFILFQLNRKPLFPLICTKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
357520203 640 hypothetical protein MTR_8g095080 [Medic 0.933 0.589 0.645 1e-129
297735822 653 unnamed protein product [Vitis vinifera] 0.861 0.532 0.668 1e-127
225463926 655 PREDICTED: uncharacterized protein LOC10 0.861 0.531 0.664 1e-126
356574581 662 PREDICTED: uncharacterized protein LOC10 0.792 0.483 0.699 1e-125
224135475 649 predicted protein [Populus trichocarpa] 0.799 0.497 0.697 1e-125
356533999 667 PREDICTED: uncharacterized protein LOC10 0.792 0.479 0.699 1e-123
255586811 637 conserved hypothetical protein [Ricinus 0.784 0.497 0.697 1e-123
356512888 623 PREDICTED: uncharacterized protein LOC10 0.910 0.590 0.630 1e-122
296082638 568 unnamed protein product [Vitis vinifera] 0.794 0.565 0.691 1e-122
224126719 659 predicted protein [Populus trichocarpa] 0.915 0.561 0.589 1e-121
>gi|357520203|ref|XP_003630390.1| hypothetical protein MTR_8g095080 [Medicago truncatula] gi|355524412|gb|AET04866.1| hypothetical protein MTR_8g095080 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/395 (64%), Positives = 301/395 (76%), Gaps = 18/395 (4%)

Query: 1   MGGQCSKGSSKADKNNTRR--SISLKSNGLQNHKLN-PSPSPLEQQHKGFSSLPK----- 52
           MGG CSK S+K +K  T++        +G+ N K N    S L    +G  S  K     
Sbjct: 1   MGGLCSK-STKGNKALTKKVEHYGNHKSGIGNKKNNHKHTSDLTSAKEGVDSKKKEEEEE 59

Query: 53  --------PQSDDFYDGIPRFDGGLSQKSKSVRSTQAAVAKVSEVSARLGRAGTVGLGKA 104
                    ++DDFYDGIPR+    S KS+SVRS QAAVAKVSEVS+RLGRAGT+G GKA
Sbjct: 60  EAVSVSAGTRNDDFYDGIPRYADSFSHKSRSVRSRQAAVAKVSEVSSRLGRAGTIGFGKA 119

Query: 105 VDVLDTLGSSMTNLNPNNGFS-GVGTKSNELSILAFEVANTIVKGSNLMLSISESSVRQL 163
           VDVLDTLGSSMTNLN   GF+ G  TK NE+ ILAFEVANTIVKG +LM S+S  +++ L
Sbjct: 120 VDVLDTLGSSMTNLNSGGGFAYGAVTKGNEVGILAFEVANTIVKGFSLMESLSTKNIKHL 179

Query: 164 KEVVLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFE 223
           KE VL  E VQ+LVSKDMDELL+I AADKRD+LK+F+ EV+RFGNRSKDPQWHNL RYFE
Sbjct: 180 KEEVLKLEAVQDLVSKDMDELLRIVAADKRDELKVFSDEVIRFGNRSKDPQWHNLDRYFE 239

Query: 224 KISRELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGS 283
           KISREL  Q+Q K+EAELLM+QLM+LVQHTAELY+EL  LDRF QD QHKR EEDN   +
Sbjct: 240 KISRELNSQRQTKEEAELLMQQLMSLVQHTAELYHELHALDRFAQDYQHKRDEEDNSSAA 299

Query: 284 QKGESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDD 343
           Q GES +IL+AEL+SQ+KQVK L+KKSLWSRSLEEVMEKLVDIV FL LE++ AFGS D 
Sbjct: 300 QSGESLSILKAELRSQKKQVKHLKKKSLWSRSLEEVMEKLVDIVHFLHLEINKAFGSPDG 359

Query: 344 HFPFKGSMSNHQRLGPAGLALHYANIILQIDSLVS 378
             PF  ++SN QRLGPAGL+LHYANI+LQ+D+LV+
Sbjct: 360 RKPFIRTISNRQRLGPAGLSLHYANIVLQMDTLVA 394




Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735822|emb|CBI18542.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225463926|ref|XP_002266039.1| PREDICTED: uncharacterized protein LOC100263351 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356574581|ref|XP_003555424.1| PREDICTED: uncharacterized protein LOC100811297 [Glycine max] Back     alignment and taxonomy information
>gi|224135475|ref|XP_002327227.1| predicted protein [Populus trichocarpa] gi|222835597|gb|EEE74032.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356533999|ref|XP_003535545.1| PREDICTED: uncharacterized protein LOC100812676 [Glycine max] Back     alignment and taxonomy information
>gi|255586811|ref|XP_002534019.1| conserved hypothetical protein [Ricinus communis] gi|223525970|gb|EEF28360.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356512888|ref|XP_003525146.1| PREDICTED: uncharacterized protein LOC100800289 [Glycine max] Back     alignment and taxonomy information
>gi|296082638|emb|CBI21643.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224126719|ref|XP_002329456.1| predicted protein [Populus trichocarpa] gi|222870136|gb|EEF07267.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
TAIR|locus:2026135 657 AT1G34320 [Arabidopsis thalian 0.804 0.494 0.666 4.9e-108
TAIR|locus:504956337 649 AT5G08660 "AT5G08660" [Arabido 0.801 0.499 0.632 1.6e-102
TAIR|locus:505006158 615 AT1G30755 [Arabidopsis thalian 0.903 0.593 0.435 1.3e-68
TAIR|locus:2086218 531 AT3G23160 "AT3G23160" [Arabido 0.542 0.412 0.293 4.9e-20
TAIR|locus:2151451 474 AT5G51670 [Arabidopsis thalian 0.584 0.497 0.239 2e-11
TAIR|locus:2184417 599 AT5G04550 "AT5G04550" [Arabido 0.487 0.328 0.254 4.5e-10
TAIR|locus:2026135 AT1G34320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
 Identities = 220/330 (66%), Positives = 264/330 (80%)

Query:    48 SSLPKPQSDDFYDGIPRFDGGLSQKSKSVRSTQAAVAKVSEVSARLGRAGTVGLGKAVDV 107
             SS   PQ+ +  DGIPR    LSQKS+S +S QAAVAKVSEVS+ LGRAGT+GLGKAVDV
Sbjct:    70 SSGSHPQNIE--DGIPRLSRVLSQKSRSTKSRQAAVAKVSEVSSLLGRAGTMGLGKAVDV 127

Query:   108 LDTLGSSMTNLNPNNGFSGVGT-KSNELSILAFEVANTIVKGSNLMLSISESSVRQLKEV 166
             LDTLGSSMTNLN + GFS   T K N++SIL+FEVANTIVKG+NLM S+S+ S+  LKEV
Sbjct:   128 LDTLGSSMTNLNLSGGFSSATTVKGNKISILSFEVANTIVKGANLMHSLSKDSITHLKEV 187

Query:   167 VLPAEGVQNLVSKDMDELLKIFAADKRDDLKIFTGEVVRFGNRSKDPQWHNLGRYFEKIS 226
             VLP+EGVQNL+SKDMDELL+I AADKR++L+IF+GEVVRFGNR KDPQ+HNL R+F+++ 
Sbjct:   188 VLPSEGVQNLISKDMDELLRIAAADKREELRIFSGEVVRFGNRCKDPQYHNLDRFFDRLG 247

Query:   227 RELIPQKQLKQEAELLMEQLMTLVQHTAELYNELQILDRFEQDCQHKRQEEDNPVGSQKG 286
              E  PQK LKQEAE +M Q+M+ V  TA+LY+EL  LDRFEQD Q K QEE+NP  +Q+G
Sbjct:   248 SEFTPQKHLKQEAETIMHQMMSFVHFTADLYHELHALDRFEQDYQRKIQEEENPSTAQRG 307

Query:   287 --ESFAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDH 344
               ++ AILR ELKSQ+K V+ L+KKSLWSR LEEVMEKLVD+V FL LE+H+AFG  D  
Sbjct:   308 VGDTLAILRTELKSQKKHVRNLKKKSLWSRILEEVMEKLVDVVHFLHLEIHEAFGGADPD 367

Query:   345 FPFKGSMSNHQRLGPAGLALHYANIILQID 374
              P      NH++LG AGLALHYANII QID
Sbjct:   368 KPANDPPINHKKLGSAGLALHYANIITQID 397




GO:0009507 "chloroplast" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:504956337 AT5G08660 "AT5G08660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006158 AT1G30755 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086218 AT3G23160 "AT3G23160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151451 AT5G51670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184417 AT5G04550 "AT5G04550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
pfam1196157 pfam11961, DUF3475, Domain of unknown function (DU 3e-19
pfam0500387 pfam05003, DUF668, Protein of unknown function (DU 1e-06
>gnl|CDD|192898 pfam11961, DUF3475, Domain of unknown function (DUF3475) Back     alignment and domain information
 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 29/57 (50%), Positives = 39/57 (68%)

Query: 136 ILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADK 192
           ILAFEVANT+ K  NL  S+S+  + +L+E VL +EGV+ LVS D   LL +  A+K
Sbjct: 1   ILAFEVANTMSKLVNLWRSLSDEEIARLREDVLGSEGVRKLVSGDDSFLLSLACAEK 57


This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with pfam05003. Length = 57

>gnl|CDD|218374 pfam05003, DUF668, Protein of unknown function (DUF668) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 404
PF1196157 DUF3475: Domain of unknown function (DUF3475); Int 99.95
PF0500389 DUF668: Protein of unknown function (DUF668); Inte 99.29
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised Back     alignment and domain information
Probab=99.95  E-value=6.5e-29  Score=191.42  Aligned_cols=57  Identities=51%  Similarity=0.656  Sum_probs=56.3

Q ss_pred             eehHHHHHHHHHHHHhhhcCChHHHHHhhhhccCcccchhccccChHHHHHHHHHHH
Q 015574          136 ILAFEVANTIVKGSNLMLSISESSVRQLKEVVLPAEGVQNLVSKDMDELLKIFAADK  192 (404)
Q Consensus       136 ILAFEVAntMSKl~~L~~SLSd~eI~rLR~evL~SeGV~~LVS~D~~~LL~LA~AEk  192 (404)
                      ||||||||||||++||||||||++|.+||+|+++|||||+|||+||+|||+||||||
T Consensus         1 ILAFEVAn~msk~~~L~~SLsd~~i~~Lr~evl~seGV~~LVS~D~~~LL~La~aE~   57 (57)
T PF11961_consen    1 ILAFEVANTMSKLVNLWQSLSDEEIARLREEVLRSEGVRKLVSDDDSFLLRLACAEK   57 (57)
T ss_pred             CccHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999999999996



This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.

>PF05003 DUF668: Protein of unknown function (DUF668); InterPro: IPR007700 This is a family of uncharacterised plant proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 44/377 (11%), Positives = 107/377 (28%), Gaps = 80/377 (21%)

Query: 38  SPLEQQHKGFSSLPKP---QSDDFYDGIPRFDGGLSQKSKSVRSTQAAVAKVSEVSARLG 94
           SP++ + +  S + +    Q D  Y+    F      + +     + A+ ++   +  + 
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVL 154

Query: 95  RAGTVGLGKAVDVLDTLGS-SMTNLNPNNGF-SGVGTKSNELSILAFEVANTIVKGSNLM 152
             G +G GK    LD   S  +        F   +   ++  ++L             L+
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--------MLQKLL 206

Query: 153 LSIS---ESSVRQLKEVVLPAEGVQN-----LVSKDMDELLKIFAADKRDD------LKI 198
             I     S       + L    +Q      L SK  +  L +       +         
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-----LNVQNAKAWNA 261

Query: 199 FTG--------------EVVRFGNRSKDPQWHNLGRYFEKISREL------IPQKQLKQE 238
           F                + +     +     H+         + L         + L +E
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 239 AELLMEQLMTLVQHTAELYNELQILDRFEQ-DCQHKRQ------EEDNPVGSQKG-ESFA 290
                 + ++++     + + L   D ++  +C               P   +K  +  +
Sbjct: 322 VLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 291 ILRAELKSQRKQVKILRK--KSLWSRSLEEVMEKLVD-IVTFLLLEMHDAFGST---DDH 344
           +             I       +W   ++  +  +V+ +  + L+E      +      +
Sbjct: 380 VF-------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 345 FPFKGSMSN----HQRL 357
              K  + N    H+ +
Sbjct: 433 LELKVKLENEYALHRSI 449


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 82.86
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
Probab=82.86  E-value=3.2  Score=43.71  Aligned_cols=73  Identities=11%  Similarity=0.268  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCccchhhhhhHHH
Q 015574          289 FAILRAELKSQRKQVKILRKKSLWSRSLEEVMEKLVDIVTFLLLEMHDAFGSTDDHFPFKGSMSNHQRLGPAGLALHYAN  368 (404)
Q Consensus       289 l~~lqqklk~QRq~VK~LKk~SLWsrt~D~VVekLvriV~tI~~rI~~VFG~~~~~~p~~~s~~~~~tLG~AgLALHYAN  368 (404)
                      +..|+.+|..|-+.++.|+.      ++++.+.++-|.=--|-..|..-.|++-......      --|      =-|-|
T Consensus       119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~------vd~------~sY~~  180 (562)
T 3ghg_A          119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALARE------VDL------KDYED  180 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCC------CCH------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchheee------cch------HHHHH
Confidence            45556666666655555553      3555555555544445566666667665322111      111      14889


Q ss_pred             HHHHHHHHHhh
Q 015574          369 IILQIDSLVSL  379 (404)
Q Consensus       369 iI~qIe~lvsr  379 (404)
                      +=-|++.+++.
T Consensus       181 ~QKQLeQv~a~  191 (562)
T 3ghg_A          181 QQKQLEQVIAK  191 (562)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhhc
Confidence            99999988854




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00