Citrus Sinensis ID: 015585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
METVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI
Secondary Structure (PSIPRED)
cccccccccHHHHcccccccEEEEEEccccHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHccccccccEEEcccccccccccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHcccccccEEEccccccccHHHHHHHHccccccEEEcccccccccHHHHcccccccccEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHccccccccEEEccccccccccHHHHHHHHccccccEEcccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHcccccccEEEEccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHHHHHHHccccccEEEccccHHccHHHHHHccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHccccccccccEEEEccccHHccHHHHHHHHHcccHHHHEEEEcccccccccHHHHHHHHHccccEEEEEcccccccccHHHHHHcccc
Coil and Loop (DISEMBL)
metvqppiltssyyssfnLRSLSLVLDVITDELLITITASLPflveldledrpnteplarldltssglqslgschhltglsltrcrhnhqgtfkRVNDMGMFLLSegckglesvrlggfskvsdAGFAAILLSCHSLKKFEVrsasflsdlafhdltgvpCALVEVRLLWCRLITSETVKKLAssrnlevldlggcksiaDTCLRSISCLRKLTalnltgaditdsglsilaqgnlpimnlclrgckrvtdkgishllcvggtisqslttldlgympgisddgILTIAAAGIGIIDLCVRSCFYVTDASVEALArkqpdqekSKQLRRLDlcnciglsvdslrwvkrpsfrglhwlgigqtrlaskgnpviteihnerpwltfcldgceigchdgwqfhesgfi
Flexible Loop (DISEMBL)
METVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSEtvkklassrnlevldlggckSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAlarkqpdqekskqlrrldlcnciglsvdslrwvKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI
Low Complexity Region (SEG)
METVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISddgiltiaaagigiidlCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI
Disordered region (IsUnstruct)
*******ILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED*******ARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEA*************LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFH*****
Disordered Region (DISOPRED)
****QPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI
Disordered Region (DISEMBL)
METVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR**********LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI
Disordered Region (DISPRO)
****QPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHESGFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	404	2.2.26 [Sep-21-2011]
Q9ZWC6	607	F-box protein At-B OS=Ara	yes	no	0.950	0.632	0.623	1e-134
Q9SDA8	656	F-box/LRR-repeat protein	no	no	0.923	0.568	0.403	9e-66
C8V4D4	585	SCF E3 ubiquitin ligase c	yes	no	0.678	0.468	0.248	8e-15
Q8N1E6	418	F-box/LRR-repeat protein	yes	no	0.680	0.657	0.288	6e-14
Q8BID8	400	F-box/LRR-repeat protein	yes	no	0.740	0.747	0.277	6e-14
Q17R01	400	F-box/LRR-repeat protein	yes	no	0.740	0.747	0.277	6e-14
Q8BH16	423	F-box/LRR-repeat protein	no	no	0.599	0.572	0.277	2e-12
Q8NEE6	735	F-box/LRR-repeat protein	no	no	0.693	0.380	0.255	3e-12
Q96IG2	436	F-box/LRR-repeat protein	no	no	0.586	0.543	0.253	3e-12
Q58DG6	436	F-box/LRR-repeat protein	no	no	0.586	0.543	0.253	3e-12

>sp|Q9ZWC6|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/385 (62%), Positives = 295/385 (76%), Gaps = 1/385 (0%)

Query: 16  SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCH 75
           SF L+SLSLVLD+I+D L+I IT SLP LV+LDLEDRP  EP    DLT +GLQ+LG C 
Sbjct: 218 SFTLQSLSLVLDLISDRLIIAITGSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQ 277

Query: 76  HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCH 135
            LT LSL R  +N + +FKR+NDMG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC 
Sbjct: 278 QLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCR 337

Query: 136 SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 195
           +LKKFEVR A  LSDLAFHD+TG  C+L EVRL  C LITSE VKKL    NLEVLDLG 
Sbjct: 338 NLKKFEVRGAFLLSDLAFHDVTGSSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGS 397

Query: 196 CKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255
           CKSI+D+CL S+S LRKLT+LNL GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS
Sbjct: 398 CKSISDSCLNSVSALRKLTSLNLAGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGIS 457

Query: 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 315
           +LL   GTIS++L+TLDLG+MPGISD  I TI      + +L +RSCF+VTD+S+E+LA 
Sbjct: 458 YLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLAT 517

Query: 316 KQPDQE-KSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
            +   E  SKQLR+L++ NC+ L+  +LRW+ +PSF GLHWLG+GQTR A +   V   I
Sbjct: 518 WERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMI 577

Query: 375 HNERPWLTFCLDGCEIGCHDGWQFH 399
             +RPWLT C DGCE+GC DGW+FH
Sbjct: 578 CGQRPWLTLCFDGCELGCSDGWEFH 602

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDA8|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1

 Score =  251 bits (640), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 218/384 (56%), Gaps = 11/384 (2%)

Query: 18  NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHL 77
           N++ L L +D ITD ++  I+ SLP L++LD+ D P  +P    DLT  GL  +     L
Sbjct: 235 NVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKL 294

Query: 78  TGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSL 137
             LSL R +  H   F+RV+D GM  L++ C G+E++ LGGF +V+DAGF  IL SC SL
Sbjct: 295 KHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILHSCASL 354

Query: 138 KKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCK 197
            KF +     L+DL FHD+     +L  V L  C L+T   ++KLASS  LE LDL GC+
Sbjct: 355 SKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCR 414

Query: 198 SIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNL-PIMNLCLRGCKRVTDKGISH 256
           ++ D  L ++S L KL  L L GADI+D+GLS L +G L  +++L +RGC+ +TDK +S 
Sbjct: 415 NLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMST 474

Query: 257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALA-- 314
           L    G+   +L  LDL  +P ++D  I  +A +G  I  L +R C  + DASV ALA  
Sbjct: 475 LF--DGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMALAST 532

Query: 315 RKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
           R   D+     L  LDL +C G++  S +W+K+P F  L WLGI      S    ++  +
Sbjct: 533 RVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGIT----GSVNRDIVDAL 588

Query: 375 HNERPWLTFCLDGCEIGC--HDGW 396
              RP L     G E+G    D W
Sbjct: 589 ARRRPHLQVSCRGEELGNDGEDDW 612

Arabidopsis thaliana (taxid: 3702)

>sp|C8V4D4|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1

 Score = 82.0 bits (201), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 142/314 (45%), Gaps = 40/314 (12%)

Query: 62  DLTSSGLQSLGSCHHLTGLSLTRCRH-------------NH-----QGTFKRVNDMGMFL 103
           D++   +     C+ +  L+LT CR               H         + + D  +F 
Sbjct: 149 DVSDGTVVPFSQCNRIERLTLTNCRKLTDIGVSDLVVGSRHLQALDVSELRSLTDHTLFK 208

Query: 104 LSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCAL 163
           ++E C  L+ + + G  KV+D    A+  +C  LK+ ++   S ++D A         ++
Sbjct: 209 VAENCNRLQGLNITGCVKVTDDSLIAVSQNCRLLKRLKLNGVSQVTDKAILSFAQNCPSI 268

Query: 164 VEVRLLWCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCL----RSISCLRKLTALNL 218
           +E+ L  C+L+T+++V  L ++ +NL  L L  C  I D+      R I  +  L  L+L
Sbjct: 269 LEIDLQECKLVTNQSVTALMTTLQNLRELRLAHCTEIDDSAFLDLPRHIQ-MTSLRILDL 327

Query: 219 TG-ADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMP 277
           T   +I D  +  +      + NL L  CK +TD+ +  +  +G    ++L  + LG+  
Sbjct: 328 TACENIRDEAVERIVSSAPRLRNLVLAKCKFITDRAVWAICKLG----KNLHYVHLGHCS 383

Query: 278 GISDDGILTIAAA--GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 335
            I+D  ++ +  +   I  IDL    C  +TD SV+ LA          +LRR+ L  C 
Sbjct: 384 NINDSAVIQLVKSCNRIRYIDLAC--CSRLTDRSVQQLA-------TLPKLRRIGLVKCQ 434

Query: 336 GLSVDSLRWVKRPS 349
            ++  S+  + RP+
Sbjct: 435 LITDASILALARPA 448

Involved in meiosis and required for ascospore formation. Involved in substrate recognition in ubiquitin-dependent degradation.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q8N1E6|FXL14_HUMAN F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 150/315 (47%), Gaps = 40/315 (12%)

Query: 62  DLTSSGL-----QSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRL 116
           +LT +GL     Q +GS   L  L+L+ C        K++ D  +  +++  KGLE + L
Sbjct: 102 NLTDNGLGHAFVQEIGS---LRALNLSLC--------KQITDSSLGRIAQYLKGLEVLEL 150

Query: 117 GGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVP-------CALVEVRLL 169
           GG S +++ G   I      LK   +RS   LSD+    L G+          L ++ L 
Sbjct: 151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQ 210

Query: 170 WCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD-ITDSG 227
            C+ +T  ++K ++     L +L+L  C  I+D  L  +S +  L +LNL   D I+D+G
Sbjct: 211 DCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTG 270

Query: 228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLL-CVGGTISQSLTTLDLGYMPGISDDGILT 286
           +  LA G+L +  L +  C +V D+ ++++   + G  S SL +        ISDDGI  
Sbjct: 271 IMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCH------ISDDGINR 324

Query: 287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL-RWV 345
           +     G+  L +  C  +TD  +E +A      E   QL  +DL  C  ++   L R  
Sbjct: 325 MVRQMHGLRTLNIGQCVRITDKGLELIA------EHLSQLTGIDLYGCTRITKRGLERIT 378

Query: 346 KRPSFRGLHWLGIGQ 360
           + P  + L+ LG+ Q
Sbjct: 379 QLPCLKVLN-LGLWQ 392

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Homo sapiens (taxid: 9606)

>sp|Q8BID8|FXL14_MOUSE F-box/LRR-repeat protein 14 OS=Mus musculus GN=Fbxl14 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 163/346 (47%), Gaps = 47/346 (13%)

Query: 34  LITITASLPFLVELDLEDRPNTEPLAR---LDLTSSGL-----QSLGSCHHLTGLSLTRC 85
           ++++  SL ++++       N E L      +LT +GL     Q +GS   L  L+L+ C
Sbjct: 75  ILSLRRSLSYVIQ----GMANIESLNLSGCYNLTDNGLGHAFVQEIGS---LRALNLSLC 127

Query: 86  RHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA 145
                   K++ D  +  +++  KGLE + LGG S +++ G   I      LK   +RS 
Sbjct: 128 --------KQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 146 SFLSDLAFHDLTGVP-------CALVEVRLLWCRLITSETVKKLASS-RNLEVLDLGGCK 197
             LSD+    L G+          L ++ L  C+ +T  ++K ++     L +L+L  C 
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 198 SIADTCLRSISCLRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 256
            I+D  L  +S +  L +LNL   D I+D+G+  LA G+L +  L +  C +V D+ +++
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 257 LL-CVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 315
           +   + G  S SL +        ISDDGI  +     G+  L +  C  +TD  +E +A 
Sbjct: 300 IAQGLDGLKSLSLCSCH------ISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA- 352

Query: 316 KQPDQEKSKQLRRLDLCNCIGLSVDSL-RWVKRPSFRGLHWLGIGQ 360
                E   QL  +DL  C  ++   L R  + P  + L+ LG+ Q
Sbjct: 353 -----EHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLN-LGLWQ 392

Substrate-recognition component of some (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Mus musculus (taxid: 10090)

>sp|Q17R01|FXL14_BOVIN F-box/LRR-repeat protein 14 OS=Bos taurus GN=FBXL14 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 163/346 (47%), Gaps = 47/346 (13%)

Query: 34  LITITASLPFLVELDLEDRPNTEPLAR---LDLTSSGL-----QSLGSCHHLTGLSLTRC 85
           ++++  SL ++++       N E L      +LT +GL     Q +GS   L  L+L+ C
Sbjct: 75  ILSLRRSLSYVIQ----GMANIESLNLSGCYNLTDNGLGHAFVQEIGS---LRALNLSLC 127

Query: 86  RHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA 145
                   K++ D  +  +++  KGLE + LGG S +++ G   I      LK   +RS 
Sbjct: 128 --------KQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSC 179

Query: 146 SFLSDLAFHDLTGVP-------CALVEVRLLWCRLITSETVKKLASS-RNLEVLDLGGCK 197
             LSD+    L G+          L ++ L  C+ +T  ++K ++     L +L+L  C 
Sbjct: 180 RHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQDCQKLTDLSLKHISRGLTGLRLLNLSFCG 239

Query: 198 SIADTCLRSISCLRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 256
            I+D  L  +S +  L +LNL   D I+D+G+  LA G+L +  L +  C +V D+ +++
Sbjct: 240 GISDAGLLHLSHMGSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAY 299

Query: 257 LL-CVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 315
           +   + G  S SL +        ISDDGI  +     G+  L +  C  +TD  +E +A 
Sbjct: 300 IAQGLDGLKSLSLCSCH------ISDDGINRMVRQMHGLRTLNIGQCVRITDKGLELIA- 352

Query: 316 KQPDQEKSKQLRRLDLCNCIGLSVDSL-RWVKRPSFRGLHWLGIGQ 360
                E   QL  +DL  C  ++   L R  + P  + L+ LG+ Q
Sbjct: 353 -----EHLSQLTGIDLYGCTRITKRGLERITQLPCLKVLN-LGLWQ 392

Substrate-recognition component of some SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin-protein ligase complexes. The SCF(FBXL14) complex acts by mediating ubiquitination and subsequent degradation of SNAI1.

Bos taurus (taxid: 9913)

>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 118/267 (44%), Gaps = 25/267 (9%)

Query: 74  CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLS 133
           C  L  L LT C      + K +        SEGC+ LE + L    +++  G  A++  
Sbjct: 129 CSKLKHLDLTSCVSVTNSSLKGI--------SEGCRNLEYLNLSWCDQITKEGIEALVRG 180

Query: 134 CHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS-RNLEVLD 192
           C  LK   +R  + L D A   +      LV + L  C  IT + V ++      L+ L 
Sbjct: 181 CRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALC 240

Query: 193 LGGCKSIADTCLRS--ISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 250
           L GC ++ D  L +  ++C R         + +TD+G ++LA+    +  + L  C  +T
Sbjct: 241 LSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHELEKMDLEECVLIT 300

Query: 251 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCV---RSCFYVTD 307
           D  +  L          L  L L +   I+D+GIL ++++  G   L V    +C  VTD
Sbjct: 301 DSTLVQL----SIHCPKLQALSLSHCELITDEGILHLSSSTCGHERLRVLELDNCLLVTD 356

Query: 308 ASVEALARKQPDQEKSKQLRRLDLCNC 334
           AS+E L       E  + L RL+L +C
Sbjct: 357 ASLEHL-------ENCRGLERLELYDC 376

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Mus musculus (taxid: 10090)

>sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3

 Score = 73.6 bits (179), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 143/344 (41%), Gaps = 64/344 (18%)

Query: 63  LTSSGLQSLG---SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGF 119
            T  GLQ L     CH L  L L+ C         +++  G   ++  C G+  + +   
Sbjct: 309 FTDKGLQYLNLGNGCHKLIYLDLSGC--------TQISVQGFRYIANSCTGIMHLTINDM 360

Query: 120 SKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETV 179
             ++D    A++  C  +       A  +SD  F  L+   C L ++R    + +T  + 
Sbjct: 361 PTLTDNCVKALVEKCSRITSLVFTGAPHISDCTFRALSA--CKLRKIRFEGNKRVTDASF 418

Query: 180 KKLASSR-NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTG-ADITDSGLSILAQG--- 234
           K +  +  NL  + +  CK I D+ LRS+S L++LT LNL     I D GL     G   
Sbjct: 419 KFIDKNYPNLSHIYMADCKGITDSSLRSLSPLKQLTVLNLANCVRIGDMGLKQFLDGPAS 478

Query: 235 ------NL------------------PIMN-LCLRGCKRVTDKGISHLLCVGGTISQSLT 269
                 NL                  P +N L LR C+ +T +GI +++ +   +S  L+
Sbjct: 479 MRIRELNLSNCVRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLS 538

Query: 270 TLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL 329
             D      IS++G L + +    + +L V  C+ +TD  ++A  +       S  L  L
Sbjct: 539 GTD------ISNEG-LNVLSRHKKLKELSVSECYRITDDGIQAFCK------SSLILEHL 585

Query: 330 DLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITE 373
           D+  C  LS D +        + L    I  T L+  G P IT+
Sbjct: 586 DVSYCSQLS-DMI-------IKALAIYCINLTSLSIAGCPKITD 621

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 121/252 (48%), Gaps = 15/252 (5%)

Query: 96  VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHD 155
           V D  +   ++ C+ +E + L G +K +DA   ++   C  L+  ++ S + +++++   
Sbjct: 104 VGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKA 163

Query: 156 LT-GVPCALVEVRLLWCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSISC-LRK 212
           L+ G P  L ++ + WC  +T + ++ L      L+ L L GC  + D  L+ I     +
Sbjct: 164 LSEGCP-LLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPE 222

Query: 213 LTALNL-TGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTL 271
           L  LNL T   ITD GL  + +G   + +LC  GC  +TD  ++ L    G     L  L
Sbjct: 223 LVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNAL----GQNCPRLRIL 278

Query: 272 DLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL 331
           ++     ++D G  T+A     +  + +  C  +TD+++  L+   P      +L+ L L
Sbjct: 279 EVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCP------RLQVLSL 332

Query: 332 CNCIGLSVDSLR 343
            +C  ++ D +R
Sbjct: 333 SHCELITDDGIR 344

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Homo sapiens (taxid: 9606)

>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 121/252 (48%), Gaps = 15/252 (5%)

Query: 96  VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHD 155
           V D  +   ++ C+ +E + L G +K +DA   ++   C  L+  ++ S + +++++   
Sbjct: 104 VGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKA 163

Query: 156 LT-GVPCALVEVRLLWCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSISC-LRK 212
           L+ G P  L ++ + WC  +T + ++ L      L+ L L GC  + D  L+ I     +
Sbjct: 164 LSEGCP-LLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPE 222

Query: 213 LTALNL-TGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTL 271
           L  LNL T   ITD GL  + +G   + +LC  GC  +TD  ++ L    G     L  L
Sbjct: 223 LVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNAL----GQNCPRLRIL 278

Query: 272 DLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL 331
           ++     ++D G  T+A     +  + +  C  +TD+++  L+   P      +L+ L L
Sbjct: 279 EVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCP------RLQVLSL 332

Query: 332 CNCIGLSVDSLR 343
            +C  ++ D +R
Sbjct: 333 SHCELITDDGIR 344

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
224122212	588	predicted protein [Populus trichocarpa]	0.952	0.654	0.690	1e-151
359494372	619	PREDICTED: F-box protein At-B-like [Viti	0.977	0.638	0.666	1e-142
296090049	607	unnamed protein product [Vitis vinifera]	0.980	0.652	0.665	1e-142
13620167	606	hypothetical protein [Capsella rubella]	0.960	0.640	0.622	1e-135
297853262	606	F-box family protein [Arabidopsis lyrata	0.950	0.633	0.618	1e-133
13619398	601	hypothetical protein [Arabidopsis thalia	0.950	0.638	0.623	1e-132
15222749	607	F-box protein At-B [Arabidopsis thaliana	0.950	0.632	0.623	1e-132
147835484	2706	hypothetical protein VITISV_021632 [Viti	0.903	0.134	0.606	1e-125
350540100	607	uncharacterized protein LOC778198 [Solan	0.928	0.617	0.561	1e-108
222640813	619	hypothetical protein OsJ_27827 [Oryza sa	0.955	0.623	0.517	1e-93

>gi|224122212|ref|XP_002330567.1| predicted protein [Populus trichocarpa] gi|222872125|gb|EEF09256.1| predicted protein [Populus trichocarpa]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/385 (69%), Positives = 314/385 (81%)

Query: 15  SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSC 74
           S F L+ LSL+LDVI+D LL+ I+ SLP LVEL LEDRP+ EPL  LDLT+ GL  LG C
Sbjct: 202 SGFVLQFLSLLLDVISDRLLVAISNSLPLLVELHLEDRPDKEPLPGLDLTNGGLHFLGCC 261

Query: 75  HHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSC 134
           H LT LSL R R N+QG+FKR+NDMGMFLLS+ C+ LESVRL GFSKVSDAGFA++L +C
Sbjct: 262 HFLTDLSLKRSRQNYQGSFKRINDMGMFLLSQRCQALESVRLSGFSKVSDAGFASLLHTC 321

Query: 135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLG 194
             LKKFEVR+A  LSDLAFHDL   PC LVEVRLL C LITSETVKKLA SR+LEVLDL 
Sbjct: 322 QKLKKFEVRNAFLLSDLAFHDLIQAPCTLVEVRLLSCGLITSETVKKLAFSRSLEVLDLC 381

Query: 195 GCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI 254
           GCKS+AD+CL SISCL++LT LNLTGADITDSGLS++ QGN PI  LCLRGCKR+TDKGI
Sbjct: 382 GCKSVADSCLSSISCLQRLTTLNLTGADITDSGLSVIGQGNTPISYLCLRGCKRITDKGI 441

Query: 255 SHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALA 314
           S LLC GG I+ +L+ LDLGYMPGISD+GILTIA  G  I +LC+RSCFYVTD ++ ALA
Sbjct: 442 SFLLCGGGAIALTLSALDLGYMPGISDNGILTIATFGREITELCIRSCFYVTDLAMRALA 501

Query: 315 RKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
            K+  Q++SKQL R+D+ NC+GLS D+L+ +++P FRGLHW+GIG+T L+S    +ITEI
Sbjct: 502 AKRRSQDRSKQLCRVDIFNCVGLSADALKLLRKPLFRGLHWIGIGKTHLSSNEGTMITEI 561

Query: 375 HNERPWLTFCLDGCEIGCHDGWQFH 399
             ERPWLT CLDGCE+ CHDGWQFH
Sbjct: 562 QKERPWLTLCLDGCEMQCHDGWQFH 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494372|ref|XP_002265565.2| PREDICTED: F-box protein At-B-like [Vitis vinifera]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/399 (66%), Positives = 310/399 (77%), Gaps = 4/399 (1%)

Query: 1   METVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLAR 60
           ++T +  I  S     F L+SLSLVLD+I+DEL+ +IT SLPFL+EL LEDRP+ EP   
Sbjct: 218 LDTAEFGIPFSPASPGFKLQSLSLVLDIISDELISSITDSLPFLIELHLEDRPSKEPSPF 277

Query: 61  LDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 120
            DLT+SGLQSL  C HLT +SL R RHN    FKR+NDMGMFLLSEGC+ LESVRLGGF 
Sbjct: 278 HDLTNSGLQSLRFCRHLTDISLIRSRHNLPVYFKRINDMGMFLLSEGCRLLESVRLGGFC 337

Query: 121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVK 180
           +VSDAGFA+IL SC  LKKFEVR+A  LSDLAFHDLTG PC+LVEV+L  C LITSETV 
Sbjct: 338 RVSDAGFASILHSCWHLKKFEVRNALLLSDLAFHDLTGAPCSLVEVKLSSCNLITSETVH 397

Query: 181 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 240
           K+ASSR LEVLDL GCKSIAD+ L SI+CL KLT LNL GAD+TD GLS+L+QG  PI +
Sbjct: 398 KMASSRRLEVLDLFGCKSIADSSLSSITCLNKLTTLNLGGADVTDRGLSVLSQGYSPISH 457

Query: 241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVR 300
           LCLRGCKRVTDKG+S L    G IS++LT LDLG+MPGISD  ILTIAA G GI +LC+R
Sbjct: 458 LCLRGCKRVTDKGVSLLFHGCGVISKTLTALDLGHMPGISDKAILTIAAVGTGITELCIR 517

Query: 301 SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQ 360
            CFYVTD+SVEALA K+  Q+  K LR+LDL +C GLSV SL  +KRP F+ L W+G+G+
Sbjct: 518 YCFYVTDSSVEALATKRRLQDGRKPLRKLDLFHCTGLSVKSLESLKRPFFQALKWIGLGR 577

Query: 361 TRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFH 399
           T L+ K N    EI NERPWLT CLDGCE+GCHDGW FH
Sbjct: 578 TCLSGKAN----EILNERPWLTLCLDGCEMGCHDGWHFH 612

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090049|emb|CBI39868.3| unnamed protein product [Vitis vinifera]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/400 (66%), Positives = 310/400 (77%), Gaps = 4/400 (1%)

Query: 1   METVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLAR 60
           ++T +  I  S     F L+SLSLVLD+I+DEL+ +IT SLPFL+EL LEDRP+ EP   
Sbjct: 206 LDTAEFGIPFSPASPGFKLQSLSLVLDIISDELISSITDSLPFLIELHLEDRPSKEPSPF 265

Query: 61  LDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 120
            DLT+SGLQSL  C HLT +SL R RHN    FKR+NDMGMFLLSEGC+ LESVRLGGF 
Sbjct: 266 HDLTNSGLQSLRFCRHLTDISLIRSRHNLPVYFKRINDMGMFLLSEGCRLLESVRLGGFC 325

Query: 121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVK 180
           +VSDAGFA+IL SC  LKKFEVR+A  LSDLAFHDLTG PC+LVEV+L  C LITSETV 
Sbjct: 326 RVSDAGFASILHSCWHLKKFEVRNALLLSDLAFHDLTGAPCSLVEVKLSSCNLITSETVH 385

Query: 181 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 240
           K+ASSR LEVLDL GCKSIAD+ L SI+CL KLT LNL GAD+TD GLS+L+QG  PI +
Sbjct: 386 KMASSRRLEVLDLFGCKSIADSSLSSITCLNKLTTLNLGGADVTDRGLSVLSQGYSPISH 445

Query: 241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVR 300
           LCLRGCKRVTDKG+S L    G IS++LT LDLG+MPGISD  ILTIAA G GI +LC+R
Sbjct: 446 LCLRGCKRVTDKGVSLLFHGCGVISKTLTALDLGHMPGISDKAILTIAAVGTGITELCIR 505

Query: 301 SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQ 360
            CFYVTD+SVEALA K+  Q+  K LR+LDL +C GLSV SL  +KRP F+ L W+G+G+
Sbjct: 506 YCFYVTDSSVEALATKRRLQDGRKPLRKLDLFHCTGLSVKSLESLKRPFFQALKWIGLGR 565

Query: 361 TRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHE 400
           T L+ K N    EI NERPWLT CLDGCE+GCHDGW FH 
Sbjct: 566 TCLSGKAN----EILNERPWLTLCLDGCEMGCHDGWHFHR 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13620167|emb|CAC36388.1| hypothetical protein [Capsella rubella]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/389 (62%), Positives = 298/389 (76%), Gaps = 1/389 (0%)

Query: 12  SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL 71
           S   SF L+SLSLVLD+I+D L+I IT SLP LV+LDLEDRP  EP    DLT +GLQ+L
Sbjct: 213 SLSPSFTLQSLSLVLDLISDRLIIAITGSLPQLVQLDLEDRPEKEPFPDSDLTYTGLQAL 272

Query: 72  GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAIL 131
           G C  LT LSL R  +N + +FKR+NDMG+FLLSE CKGLESVRLGGF KVSDAGFA++L
Sbjct: 273 GYCQQLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFQKVSDAGFASLL 332

Query: 132 LSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVL 191
            SC +LKKFEVR A  LSDLAFHD+TG  C L EVRL  C LITSE VKKL    NLEVL
Sbjct: 333 HSCRNLKKFEVRGAFLLSDLAFHDVTGSSCFLQEVRLSTCPLITSEAVKKLGLCGNLEVL 392

Query: 192 DLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD 251
           DLG CKSI+D+CL S+S LR+LT+LNL GAD+TDSG+  L + ++PI  L LRGCKRV+D
Sbjct: 393 DLGSCKSISDSCLNSVSVLRRLTSLNLAGADVTDSGMLALGKSDVPITQLSLRGCKRVSD 452

Query: 252 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVE 311
           +GISHLL   GTIS++L+TLDLG+MPG+SD  I TI      + +L +RSCFYVTD+S+E
Sbjct: 453 RGISHLLINEGTISKTLSTLDLGHMPGMSDRAIHTITRYCKALTELSIRSCFYVTDSSIE 512

Query: 312 ALARKQPDQE-KSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPV 370
           +LA ++   E  SKQLR+L++ NC+ L+  +LRW+ +PSF GLHWLG+GQTR+A +   V
Sbjct: 513 SLATRERQVEGGSKQLRKLNIHNCVSLTTGALRWLSKPSFAGLHWLGLGQTRIAGRKETV 572

Query: 371 ITEIHNERPWLTFCLDGCEIGCHDGWQFH 399
              I  +RPWLT C DGCE+GC+DGW+FH
Sbjct: 573 TATICGQRPWLTLCFDGCELGCYDGWEFH 601

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853262|ref|XP_002894512.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297340354|gb|EFH70771.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/385 (61%), Positives = 296/385 (76%), Gaps = 1/385 (0%)

Query: 16  SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCH 75
           SF L+SLSLVLD+I+D L+I IT SLP LV+LDLEDRP  EP    DLT +GLQ+LG C 
Sbjct: 217 SFTLQSLSLVLDLISDRLIIAITGSLPQLVKLDLEDRPEKEPFPDSDLTYTGLQALGYCQ 276

Query: 76  HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCH 135
            LT LSL R  +N + +FKR+NDMG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC 
Sbjct: 277 QLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCR 336

Query: 136 SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 195
           +LKKFE+R A  LSDLAFHD+TG  C+L EV+L  C LITSE VKKL    NLEVLDLG 
Sbjct: 337 NLKKFEIRGAFLLSDLAFHDVTGSSCSLQEVKLSTCPLITSEAVKKLGLCGNLEVLDLGS 396

Query: 196 CKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255
           CKSI+D+CL S+S LRKLT+LNL GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS
Sbjct: 397 CKSISDSCLNSVSALRKLTSLNLAGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGIS 456

Query: 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 315
           HLL   GTI+++L+TLDLG+MPGISD  I TI      + +L +RSCF+VTD+S+E+LA 
Sbjct: 457 HLLNNEGTITKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLAT 516

Query: 316 KQPDQE-KSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
           ++   E  SKQLR+L++ NC+ L+  +LRW+ +PSF GLHWLG+GQTR A +   V   I
Sbjct: 517 RERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGLGQTRFAGRKETVTATI 576

Query: 375 HNERPWLTFCLDGCEIGCHDGWQFH 399
              RPWLT C DGCE+GC+DGW+FH
Sbjct: 577 CGHRPWLTLCFDGCELGCYDGWEFH 601

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13619398|emb|CAC36384.1| hypothetical protein [Arabidopsis thaliana]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/385 (62%), Positives = 295/385 (76%), Gaps = 1/385 (0%)

Query: 16  SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCH 75
           SF L+SLSLVLD+I+D L+I IT SLP LV+LDLEDRP  EP    DLT +GLQ+LG C 
Sbjct: 212 SFTLQSLSLVLDLISDRLIIAITGSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQ 271

Query: 76  HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCH 135
            LT LSL R  +N + +FKR+NDMG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC 
Sbjct: 272 QLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCR 331

Query: 136 SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 195
           +LKKFEVR A  LSDLAFHD+TG  C+L EVRL  C LITSE VKKL    NLEVLDLG 
Sbjct: 332 NLKKFEVRGAFLLSDLAFHDVTGSSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGS 391

Query: 196 CKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255
           CKSI+D+CL S+S LRKLT+LNL GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS
Sbjct: 392 CKSISDSCLNSVSALRKLTSLNLAGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGIS 451

Query: 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 315
           +LL   GTIS++L+TLDLG+MPGISD  I TI      + +L +RSCF+VTD+S+E+LA 
Sbjct: 452 YLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLAT 511

Query: 316 KQPDQE-KSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
            +   E  SKQLR+L++ NC+ L+  +LRW+ +PSF GLHWLG+GQTR A +   V   I
Sbjct: 512 WERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMI 571

Query: 375 HNERPWLTFCLDGCEIGCHDGWQFH 399
             +RPWLT C DGCE+GC DGW+FH
Sbjct: 572 CGQRPWLTLCFDGCELGCSDGWEFH 596

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222749|ref|NP_175955.1| F-box protein At-B [Arabidopsis thaliana] gi|75339120|sp|Q9ZWC6.1|ATB_ARATH RecName: Full=F-box protein At-B gi|8778504|gb|AAF79512.1|AC002328_20 F20N2.2 [Arabidopsis thaliana] gi|20856547|gb|AAM26672.1| At1g55590/F20N2_18 [Arabidopsis thaliana] gi|24111385|gb|AAN46816.1| At1g55590/F20N2_18 [Arabidopsis thaliana] gi|332195148|gb|AEE33269.1| F-box protein At-B [Arabidopsis thaliana]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/385 (62%), Positives = 295/385 (76%), Gaps = 1/385 (0%)

Query: 16  SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCH 75
           SF L+SLSLVLD+I+D L+I IT SLP LV+LDLEDRP  EP    DLT +GLQ+LG C 
Sbjct: 218 SFTLQSLSLVLDLISDRLIIAITGSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQ 277

Query: 76  HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCH 135
            LT LSL R  +N + +FKR+NDMG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC 
Sbjct: 278 QLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCR 337

Query: 136 SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 195
           +LKKFEVR A  LSDLAFHD+TG  C+L EVRL  C LITSE VKKL    NLEVLDLG 
Sbjct: 338 NLKKFEVRGAFLLSDLAFHDVTGSSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGS 397

Query: 196 CKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255
           CKSI+D+CL S+S LRKLT+LNL GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS
Sbjct: 398 CKSISDSCLNSVSALRKLTSLNLAGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGIS 457

Query: 256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 315
           +LL   GTIS++L+TLDLG+MPGISD  I TI      + +L +RSCF+VTD+S+E+LA 
Sbjct: 458 YLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLAT 517

Query: 316 KQPDQE-KSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
            +   E  SKQLR+L++ NC+ L+  +LRW+ +PSF GLHWLG+GQTR A +   V   I
Sbjct: 518 WERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMI 577

Query: 375 HNERPWLTFCLDGCEIGCHDGWQFH 399
             +RPWLT C DGCE+GC DGW+FH
Sbjct: 578 CGQRPWLTLCFDGCELGCSDGWEFH 602

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835484|emb|CAN77480.1| hypothetical protein VITISV_021632 [Vitis vinifera]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/399 (60%), Positives = 286/399 (71%), Gaps = 34/399 (8%)

Query: 1    METVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLAR 60
            +ET +  I  S     F L+SLSLVLD+I+DEL+ +IT SLPFL+EL LEDRP+ EP   
Sbjct: 2335 LETAEFGIPFSPASPGFKLQSLSLVLDIISDELISSITNSLPFLIELHLEDRPSKEPSPF 2394

Query: 61   LDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 120
             DLT+SGLQSL  CHHLT +SL R RHN    FKR+NDMGMFLLSEGC+ LESVRLGGF 
Sbjct: 2395 HDLTNSGLQSLRFCHHLTDISLIRSRHNLPVYFKRINDMGMFLLSEGCRLLESVRLGGFC 2454

Query: 121  KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVK 180
            +VSDAGFA+IL SC  LKKFEVR+A  LSDLAFHDLTG PC+LVEV+L  C LITSETV 
Sbjct: 2455 RVSDAGFASILHSCWHLKKFEVRNALLLSDLAFHDLTGAPCSLVEVKLSSCNLITSETVH 2514

Query: 181  KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 240
            K+AS + +                               GAD+TD GLS+L+QG  PI +
Sbjct: 2515 KMASFQKV------------------------------GGADVTDRGLSVLSQGYSPISH 2544

Query: 241  LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVR 300
            LCLRGCKRVTDKG+S L    G IS++LT LDLG+MPGISD  ILTIAA G GI +LC+R
Sbjct: 2545 LCLRGCKRVTDKGVSLLFHGCGVISKTLTALDLGHMPGISDKAILTIAAVGTGITELCIR 2604

Query: 301  SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQ 360
             CFYVTD+SVEALA K+  Q+  K LR+LDL +C GLS+ SL  +KRP F+ L W+G+G+
Sbjct: 2605 YCFYVTDSSVEALATKRRLQDGRKPLRKLDLFHCTGLSIKSLESLKRPFFQALKWIGLGR 2664

Query: 361  TRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFH 399
            T L+ KGN    EI NERPWLT CLDGCE+GCHDGW FH
Sbjct: 2665 TCLSGKGN----EICNERPWLTLCLDGCEMGCHDGWHFH 2699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540100|ref|NP_001234642.1| uncharacterized protein LOC778198 [Solanum lycopersicum] gi|13620218|emb|CAC36396.1| hypothetical protein [Solanum lycopersicum] gi|13620225|emb|CAC36400.1| hypothetical protein [Solanum lycopersicum]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/383 (56%), Positives = 266/383 (69%), Gaps = 8/383 (2%)

Query: 17  FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHH 76
           FNL+SLSLVLDVI+D LL T+  SLP LVELDLEDRP  +P    DLT+ GLQ + SC H
Sbjct: 227 FNLQSLSLVLDVISDSLLRTVVNSLPLLVELDLEDRPFMDPTIE-DLTNVGLQRVQSCKH 285

Query: 77  LTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHS 136
           L  L++ R   N++  F+RVN+MGMFLLSEGC  LESV+LGGF+ V+DAGF+ IL SC  
Sbjct: 286 LITLAIVRSSMNYRTAFRRVNNMGMFLLSEGCGRLESVKLGGFANVTDAGFSTILNSCRK 345

Query: 137 LKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGC 196
           LKK EV ++  LSDLAFH++ GV  +L+E+RLL CRL+TSE ++ L+    LEVLD  GC
Sbjct: 346 LKKLEVLNSCLLSDLAFHNMRGVARSLIELRLLSCRLLTSEALEGLSLLSKLEVLDTSGC 405

Query: 197 KSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 256
           +SI + CL  IS +  LT LNL  ADITD GL++L  GNL I  LC+RGCKRVTDKGI  
Sbjct: 406 RSIGNPCLFVISRVTTLTKLNLAEADITDKGLALLGMGNLGITQLCIRGCKRVTDKGIER 465

Query: 257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARK 316
           L C  G I ++L+ LD+  MPGI+D  I TIA+A   + DL +R CF+VTDA V+ L  +
Sbjct: 466 LFCAEGKIGKTLSLLDVSRMPGITDAAIFTIASAAKALTDLSLRYCFHVTDAGVKMLLDR 525

Query: 317 QPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHN 376
            P+  K   L++LDL  C GLS D   W+   SF GL WLG+G T L +K +   T I N
Sbjct: 526 -PNH-KVSLLQKLDLYKCRGLSGD---WIM-SSFCGLRWLGVGGTLLVNKRDDFST-ICN 578

Query: 377 ERPWLTFCLDGCEIGCHDGWQFH 399
            RPWL  C DGCE GCHDGWQFH
Sbjct: 579 VRPWLVVCFDGCEFGCHDGWQFH 601

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222640813|gb|EEE68945.1| hypothetical protein OsJ_27827 [Oryza sativa Japonica Group]

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 202/390 (51%), Positives = 258/390 (66%), Gaps = 4/390 (1%)

Query: 7   PILTSSYYSSFN-LRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTS 65
           PI TS   S  N L SLSLVLD+ITDEL+  IT SL  LVEL LED P  EP    DLT+
Sbjct: 223 PISTSLKTSISNTLESLSLVLDIITDELVAFITGSLHNLVELCLEDNPMKEPDLHNDLTN 282

Query: 66  SGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA 125
            GLQ+LG CH+L  LSLTR + N   TF+RV D G+ +L++GCK L+++RL GFSKV DA
Sbjct: 283 VGLQALGLCHNLAHLSLTRGKQNCSSTFRRVTDFGIMMLADGCKQLKTIRLAGFSKVRDA 342

Query: 126 GFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS 185
           G+AA+L SC  LKKFEV S  +LSDL   DL      + EVRLL C L+TSET   L+S 
Sbjct: 343 GYAALLQSCKDLKKFEV-STGYLSDLTCLDLDEAAPKITEVRLLCCSLLTSETAISLSSC 401

Query: 186 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRG 245
             LEVLDL GC+SIAD+ L SIS L KLT L+L GADITD+GLS L  G  P+ +LCLRG
Sbjct: 402 TKLEVLDLSGCRSIADSGLASISQLSKLTLLDLAGADITDAGLSALGNGRCPMSSLCLRG 461

Query: 246 CKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYV 305
           CKR+++ GI+ LLC  GTI+++L +LD+G +P IS   +  IA     I  LC+R+C  +
Sbjct: 462 CKRISNNGIASLLCGSGTINKTLISLDIGNVPRISGRAVTLIAKNCEQISSLCLRNCLLI 521

Query: 306 TDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 365
            D+S+E L   + +  KS  LR LDL  C  LS + L   + P FRGL WLG+G+  L  
Sbjct: 522 NDSSLETLGSMRHNLGKS-SLRMLDLSYCSRLSRNFLGLFEPPFFRGLRWLGVGKNMLER 580

Query: 366 KG-NPVITEIHNERPWLTFCLDGCEIGCHD 394
           +G +P + E+   +P LT C + CE+GC +
Sbjct: 581 RGCSPTVAELLERKPGLTVCGNACEMGCRN 610

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
TAIR|locus:2020477	607	AT1G55590 [Arabidopsis thalian	0.950	0.632	0.610	1.9e-122
TAIR|locus:2827644	656	AT2G17020 "AT2G17020" [Arabido	0.918	0.565	0.391	2.7e-61
UNIPROTKB|F1NMM1	345	FBXL14 "Uncharacterized protei	0.787	0.921	0.259	5.9e-16
UNIPROTKB|Q17R01	400	FBXL14 "F-box/LRR-repeat prote	0.680	0.687	0.279	8.4e-15
MGI|MGI:2141676	400	Fbxl14 "F-box and leucine-rich	0.680	0.687	0.279	8.4e-15
RGD|1305523	400	Fbxl14 "F-box and leucine-rich	0.680	0.687	0.279	8.4e-15
UNIPROTKB|Q8N1E6	418	FBXL14 "F-box/LRR-repeat prote	0.680	0.657	0.279	9.8e-15
TAIR|locus:2166978	405	AT5G23340 [Arabidopsis thalian	0.452	0.451	0.312	1.1e-14
ZFIN|ZDB-GENE-030131-5920	411	fbxl14a "F-box and leucine-ric	0.769	0.756	0.253	1.7e-13
ZFIN|ZDB-GENE-030131-3556	400	fbxl14b "F-box and leucine-ric	0.764	0.772	0.25	2.1e-13

TAIR|locus:2020477 AT1G55590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 235/385 (61%), Positives = 288/385 (74%)

Query:    16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCH 75
             SF L+SLSLVLD+I+D L+I IT SLP LV+LDLEDRP  EP    DLT +GLQ+LG C 
Sbjct:   218 SFTLQSLSLVLDLISDRLIIAITGSLPQLVKLDLEDRPEKEPFPDNDLTYTGLQALGFCQ 277

Query:    76 HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCH 135
              LT LSL R  +N + +FKR+NDMG+FLLSE CKGLESVRLGGF KVSDAGFA++L SC 
Sbjct:   278 QLTSLSLVRTCYNRKISFKRINDMGIFLLSEACKGLESVRLGGFPKVSDAGFASLLHSCR 337

Query:   136 SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 195
             +LKKFEVR A  LSDLAFHD+TG  C+L EVRL  C LITSE VKKL    NLEVLDLG 
Sbjct:   338 NLKKFEVRGAFLLSDLAFHDVTGSSCSLQEVRLSTCPLITSEAVKKLGLCGNLEVLDLGS 397

Query:   196 CKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 255
             CKSI+D+CL S+S LRKLT+LNL GAD+TDSG+  L + ++PI  L LRGC+RV+D+GIS
Sbjct:   398 CKSISDSCLNSVSALRKLTSLNLAGADVTDSGMLALGKSDVPITQLSLRGCRRVSDRGIS 457

Query:   256 HLLCVGGTISQSLTTLDLGYMPGISXXXXXXXXXXXXXXXXXCVRSCFYVTDASVEALAR 315
             +LL   GTIS++L+TLDLG+MPGIS                  +RSCF+VTD+S+E+LA 
Sbjct:   458 YLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHVTDSSIESLAT 517

Query:   316 KQPDQEK-SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
              +   E  SKQLR+L++ NC+ L+  +LRW+ +PSF GLHWLG+GQTR A +   V   I
Sbjct:   518 WERQAEGGSKQLRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGMGQTRFAGRKETVTAMI 577

Query:   375 HNERPWLTFCLDGCEIGCHDGWQFH 399
               +RPWLT C DGCE+GC DGW+FH
Sbjct:   578 CGQRPWLTLCFDGCELGCSDGWEFH 602

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2827644 AT2G17020 "AT2G17020" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 149/381 (39%), Positives = 211/381 (55%)

Query:    18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHL 77
             N++ L L +D ITD ++  I+ SLP L++LD+ D P  +P    DLT  GL  +     L
Sbjct:   235 NVQRLRLSVDCITDAVVKAISKSLPSLIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKL 294

Query:    78 TGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSL 137
               LSL R +  H   F+RV+D GM  L++ C G+E++ LGGF +V+DAGF  IL SC SL
Sbjct:   295 KHLSLIRSQEFHPTYFRRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTILHSCASL 354

Query:   138 KKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCK 197
              KF +     L+DL FHD+     +L  V L  C L+T   ++KLASS  LE LDL GC+
Sbjct:   355 SKFSIYHGPKLTDLVFHDILATTLSLSHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCR 414

Query:   198 SIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP-IMNLCLRGCKRVTDKGISH 256
             ++ D  L ++S L KL  L L GADI+D+GLS L +G L  +++L +RGC+ +TDK +S 
Sbjct:   415 NLRDETLTAVSHLPKLKVLLLDGADISDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMST 474

Query:   257 LLCVGGTISQSLTTLDLGYMPGISXXXXXXXXXXXXXXXXXCVRSCFYVTDASVEALA-- 314
             L    G+   +L  LDL  +P ++                  +R C  + DASV ALA  
Sbjct:   475 LF--DGSSKLALRELDLSNLPNLTDAAIFALAKSGAPITKLQLRECRLIGDASVMALAST 532

Query:   315 RKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
             R   D+     L  LDL +C G++  S +W+K+P F  L WLGI      S    ++  +
Sbjct:   533 RVYEDECPGSSLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGI----TGSVNRDIVDAL 588

Query:   375 HNERPWLTFCLDGCEIGCHDG 395
                RP L     G E+G +DG
Sbjct:   589 ARRRPHLQVSCRGEELG-NDG 608

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006486 "protein glycosylation" evidence=RCA

UNIPROTKB|F1NMM1 FBXL14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 5.9e-16, P = 5.9e-16
 Identities = 92/354 (25%), Positives = 162/354 (45%)

Query:    34 LITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS--LGSCHHLTGLSLTRCRHNHQG 91
             ++++  SL ++++  + D  +       +LT +GL    +     L  L+L+ C      
Sbjct:     8 ILSLRRSLSYVIQ-GMADIESLNLSGCYNLTDNGLGHAFVAEISSLRSLNLSLC------ 60

Query:    92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDL 151
               K++ D  +  +++  KGLE + LGG S +++ G   I      LK   +RS   LSD+
Sbjct:    61 --KQITDSSLGRIAQYLKGLEVLELGGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDV 118

Query:   152 AFHDLTGVP------C-ALVEVRLLWCRLITSETVKKLASSRN-LEVLDLGGCKSIADTC 203
                 L G+       C  L ++ L  C+ ++  ++K LA     L  L+L  C  I+D  
Sbjct:   119 GIGHLAGMTRSAAEGCLGLEQLTLQDCQKLSDLSIKHLARGLGRLRQLNLSFCGGISDAG 178

Query:   204 LRSISCLRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLC-VG 261
             L  +S +  L +LNL   D I+D+G+  LA G+L +  L +  C +V D+ ++++   + 
Sbjct:   179 LLHLSHMSSLRSLNLRSCDNISDTGIMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLD 238

Query:   262 GTISQSLTTLDLGYMPGISXXXXXXXXXXXXXXXXXCVRSCFYVTDASVEALARKQPDQE 321
             G  S SL +  +    GI+                 CVR    +TD  +E +A      E
Sbjct:   239 GLRSLSLCSCHISD-EGINRMVRQMHGLRTLNIGQ-CVR----ITDKGLELIA------E 286

Query:   322 KSKQLRRLDLCNCIGLSVDSL-RWVKRPSFRGLHWLGIGQTRLASKGNPVITEI 374
                QL  +DL  C  ++   L R  + P  + L+ LG+ +   + K   ++TEI
Sbjct:   287 HLSQLTGIDLYGCTRITKRGLERITQLPCLKVLN-LGLWEMTESEKLG-IVTEI 338

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q17R01 FBXL14 "F-box/LRR-repeat protein 14" [Bos taurus (taxid:9913)]

 Score = 212 (79.7 bits), Expect = 8.4e-15, P = 8.4e-15
 Identities = 88/315 (27%), Positives = 146/315 (46%)

Query:    62 DLTSSGL-----QSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRL 116
             +LT +GL     Q +GS   L  L+L+ C        K++ D  +  +++  KGLE + L
Sbjct:   102 NLTDNGLGHAFVQEIGS---LRALNLSLC--------KQITDSSLGRIAQYLKGLEVLEL 150

Query:   117 GGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVP------C-ALVEVRLL 169
             GG S +++ G   I      LK   +RS   LSD+    L G+       C  L ++ L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQ 210

Query:   170 WCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD-ITDSG 227
              C+ +T  ++K ++     L +L+L  C  I+D  L  +S +  L +LNL   D I+D+G
Sbjct:   211 DCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTG 270

Query:   228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLC-VGGTISQSLTTLDLGYMPGISXXXXXX 286
             +  LA G+L +  L +  C +V D+ ++++   + G  S SL +  +    GI+      
Sbjct:   271 IMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD-DGINRMVRQM 329

Query:   287 XXXXXXXXXXXCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL-RWV 345
                        CVR    +TD  +E +A      E   QL  +DL  C  ++   L R  
Sbjct:   330 HGLRTLNIGQ-CVR----ITDKGLELIA------EHLSQLTGIDLYGCTRITKRGLERIT 378

Query:   346 KRPSFRGLHWLGIGQ 360
             + P  + L+ LG+ Q
Sbjct:   379 QLPCLKVLN-LGLWQ 392

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

MGI|MGI:2141676 Fbxl14 "F-box and leucine-rich repeat protein 14" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 8.4e-15, P = 8.4e-15
 Identities = 88/315 (27%), Positives = 146/315 (46%)

Query:    62 DLTSSGL-----QSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRL 116
             +LT +GL     Q +GS   L  L+L+ C        K++ D  +  +++  KGLE + L
Sbjct:   102 NLTDNGLGHAFVQEIGS---LRALNLSLC--------KQITDSSLGRIAQYLKGLEVLEL 150

Query:   117 GGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVP------C-ALVEVRLL 169
             GG S +++ G   I      LK   +RS   LSD+    L G+       C  L ++ L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQ 210

Query:   170 WCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD-ITDSG 227
              C+ +T  ++K ++     L +L+L  C  I+D  L  +S +  L +LNL   D I+D+G
Sbjct:   211 DCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTG 270

Query:   228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLC-VGGTISQSLTTLDLGYMPGISXXXXXX 286
             +  LA G+L +  L +  C +V D+ ++++   + G  S SL +  +    GI+      
Sbjct:   271 IMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD-DGINRMVRQM 329

Query:   287 XXXXXXXXXXXCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL-RWV 345
                        CVR    +TD  +E +A      E   QL  +DL  C  ++   L R  
Sbjct:   330 HGLRTLNIGQ-CVR----ITDKGLELIA------EHLSQLTGIDLYGCTRITKRGLERIT 378

Query:   346 KRPSFRGLHWLGIGQ 360
             + P  + L+ LG+ Q
Sbjct:   379 QLPCLKVLN-LGLWQ 392

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

RGD|1305523 Fbxl14 "F-box and leucine-rich repeat protein 14" [Rattus norvegicus (taxid:10116)]

 Score = 212 (79.7 bits), Expect = 8.4e-15, P = 8.4e-15
 Identities = 88/315 (27%), Positives = 146/315 (46%)

Query:    62 DLTSSGL-----QSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRL 116
             +LT +GL     Q +GS   L  L+L+ C        K++ D  +  +++  KGLE + L
Sbjct:   102 NLTDNGLGHAFVQEIGS---LRALNLSLC--------KQITDSSLGRIAQYLKGLEVLEL 150

Query:   117 GGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVP------C-ALVEVRLL 169
             GG S +++ G   I      LK   +RS   LSD+    L G+       C  L ++ L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQ 210

Query:   170 WCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD-ITDSG 227
              C+ +T  ++K ++     L +L+L  C  I+D  L  +S +  L +LNL   D I+D+G
Sbjct:   211 DCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTG 270

Query:   228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLC-VGGTISQSLTTLDLGYMPGISXXXXXX 286
             +  LA G+L +  L +  C +V D+ ++++   + G  S SL +  +    GI+      
Sbjct:   271 IMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD-DGINRMVRQM 329

Query:   287 XXXXXXXXXXXCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL-RWV 345
                        CVR    +TD  +E +A      E   QL  +DL  C  ++   L R  
Sbjct:   330 HGLRTLNIGQ-CVR----ITDKGLELIA------EHLSQLTGIDLYGCTRITKRGLERIT 378

Query:   346 KRPSFRGLHWLGIGQ 360
             + P  + L+ LG+ Q
Sbjct:   379 QLPCLKVLN-LGLWQ 392

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

UNIPROTKB|Q8N1E6 FBXL14 "F-box/LRR-repeat protein 14" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 9.8e-15, P = 9.8e-15
 Identities = 88/315 (27%), Positives = 146/315 (46%)

Query:    62 DLTSSGL-----QSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRL 116
             +LT +GL     Q +GS   L  L+L+ C        K++ D  +  +++  KGLE + L
Sbjct:   102 NLTDNGLGHAFVQEIGS---LRALNLSLC--------KQITDSSLGRIAQYLKGLEVLEL 150

Query:   117 GGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVP------C-ALVEVRLL 169
             GG S +++ G   I      LK   +RS   LSD+    L G+       C  L ++ L 
Sbjct:   151 GGCSNITNTGLLLIAWGLQRLKSLNLRSCRHLSDVGIGHLAGMTRSAAEGCLGLEQLTLQ 210

Query:   170 WCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD-ITDSG 227
              C+ +T  ++K ++     L +L+L  C  I+D  L  +S +  L +LNL   D I+D+G
Sbjct:   211 DCQKLTDLSLKHISRGLTGLRLLNLSFCGGISDAGLLHLSHMGSLRSLNLRSCDNISDTG 270

Query:   228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLC-VGGTISQSLTTLDLGYMPGISXXXXXX 286
             +  LA G+L +  L +  C +V D+ ++++   + G  S SL +  +    GI+      
Sbjct:   271 IMHLAMGSLRLSGLDVSFCDKVGDQSLAYIAQGLDGLKSLSLCSCHISD-DGINRMVRQM 329

Query:   287 XXXXXXXXXXXCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL-RWV 345
                        CVR    +TD  +E +A      E   QL  +DL  C  ++   L R  
Sbjct:   330 HGLRTLNIGQ-CVR----ITDKGLELIA------EHLSQLTGIDLYGCTRITKRGLERIT 378

Query:   346 KRPSFRGLHWLGIGQ 360
             + P  + L+ LG+ Q
Sbjct:   379 QLPCLKVLN-LGLWQ 392

GO:0005515 "protein binding" evidence=IPI

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 64/205 (31%), Positives = 102/205 (49%)

Query:    63 LTSSGLQSLGS-CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 121
             L+  GL ++   CH L  L L  CR         + D  +  LSE C+ LE++ L G + 
Sbjct:   137 LSDKGLSAVAEGCHDLRALHLAGCRF--------ITDESLKSLSERCRDLEALGLQGCTN 188

Query:   122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCA--LVEVRLLWCRLITSETV 179
             ++D+G A ++  C  +K  ++   S + D     +    CA  L  ++LL C  + +E++
Sbjct:   189 ITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKA-CASSLKTLKLLDCYKVGNESI 247

Query:   180 KKLAS-SRNLEVLDLGGCKSIADTCLRSI--SCLRKLTALNLTGA-DITDSGLS-ILAQ- 233
               LA   +NLE L +GGC+ I+D  +  +  SC   L  L +    +I+DS LS IL Q 
Sbjct:   248 SSLAQFCKNLETLIIGGCRDISDESIMLLADSCKDSLKNLRMDWCLNISDSSLSCILKQC 307

Query:   234 GNLPIMNL-CLRGCKRVTDKGISHL 257
              NL  +++ C   C+ VTD     L
Sbjct:   308 KNLEALDIGC---CEEVTDTAFRDL 329

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)]

 Score = 201 (75.8 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 89/351 (25%), Positives = 159/351 (45%)

Query:    34 LITITASLPFLVELDLEDRPNTEPL---ARLDLTSSGLQS--LGSCHHLTGLSLTRCRHN 88
             ++++  SL ++++      PN E L      +LT +GL    +     L  L+L+ C   
Sbjct:    75 ILSLRRSLSYVIQ----GMPNIESLNLSGCYNLTDNGLGHAFVQDIPSLRILNLSLC--- 127

Query:    89 HQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFL 148
                  K++ D  +  +++  K LE + LGG S +++ G   I    H+LK   +RS   +
Sbjct:   128 -----KQITDSSLGRIAQYLKNLELLDLGGCSNITNTGLLLIAWGLHNLKSLNLRSCRHV 182

Query:   149 SDLAFHDLTGVP------CALVE-VRLLWCRLITSETVKKLASSRN-LEVLDLGGCKSIA 200
             SD+    L G+       C  +E + L  C+ +T  ++K ++   N L+VL+L  C  I+
Sbjct:   183 SDVGIGHLAGMTRSAAEGCLTLEHLTLQDCQKLTDLSLKHISKGLNKLKVLNLSFCGGIS 242

Query:   201 DTCLRSISCLRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLC 259
             D  +  +S + +L  LNL   D I+D+G+  L+ G L +  L +  C +V D+ ++++  
Sbjct:   243 DAGMIHLSHMTQLWTLNLRSCDNISDTGIMHLSMGALRLYGLDVSFCDKVGDQSLAYI-- 300

Query:   260 VGGTISQSLTTLDLGYMPGISXXXXXXXXXXXXXXXXXCVRSCFYVTDASVEALARKQPD 319
               G     L +L L     IS                  +  C  +TD  +E +A     
Sbjct:   301 AQGLYQ--LKSLSLCSCH-ISDDGINRMVRQMHELKTLNIGQCVRITDKGLELIA----- 352

Query:   320 QEKSKQLRRLDLCNCIGLSVDSL-RWVKRPSFRGLHWLGIGQ-TRLASKGN 368
              +   QL  +DL  C  ++   L R  + P  + L+ LG+ Q T +   G+
Sbjct:   353 -DHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLN-LGLWQMTEVKGLGD 401

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IC

ZFIN|ZDB-GENE-030131-3556 fbxl14b "F-box and leucine-rich repeat protein 14b" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 87/348 (25%), Positives = 154/348 (44%)

Query:    34 LITITASLPFLVELDLEDRPNTEPL---ARLDLTSSGLQS--LGSCHHLTGLSLTRCRHN 88
             ++++  SL ++++      PN E L      +LT +GL    +     L  L+L+ C   
Sbjct:    75 ILSLRRSLSYVIQ----GMPNIESLNLSGCYNLTDNGLGHAFVQEIPSLRVLNLSLC--- 127

Query:    89 HQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFL 148
                  K++ D  +  +++  K LE + LGG S +++ G   I    H LK   +RS   +
Sbjct:   128 -----KQITDSSLGRIAQYLKNLEVLELGGCSNITNTGLLLIAWGLHRLKSLNLRSCRHV 182

Query:   149 SDLAFHDLTGVP------CALVEVRLLW-CRLITSETVKKLASS-RNLEVLDLGGCKSIA 200
             SD+    L G+       C  +E   L  C+ +T  ++K ++     L+VL+L  C  I+
Sbjct:   183 SDVGIGHLAGMTRSAAEGCLSLEYLTLQDCQKLTDLSLKHISKGLTKLKVLNLSFCGGIS 242

Query:   201 DTCLRSISCLRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLC 259
             D  +  +S +  L +LNL   D I+D+G+  LA G L +  L +  C ++ D+ ++++  
Sbjct:   243 DAGMIHLSHMTSLWSLNLRSCDNISDTGIMHLAMGTLRLSGLDVSFCDKIGDQSLAYI-- 300

Query:   260 VGGTISQSLTTLDLGYMPGISXXXXXXXXXXXXXXXXXCVRSCFYVTDASVEALARKQPD 319
               G     L +L L     IS                  +  C  +TD  +E +A     
Sbjct:   301 AQGLYQ--LKSLSLCSCH-ISDDGINRMVRQMHELRTLNIGQCVRITDKGLELIA----- 352

Query:   320 QEKSKQLRRLDLCNCIGLSVDSL-RWVKRPSFRGLHWLGIGQTRLASK 366
              +   QL  +DL  C  ++   L R  + P  + L+ LG+ Q   + K
Sbjct:   353 -DHLTQLTGIDLYGCTKITKRGLERITQLPCLKVLN-LGLWQMTESEK 398

GO:0004842 "ubiquitin-protein ligase activity" evidence=IC

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZWC6	ATB_ARATH	No assigned EC number	0.6233	0.9504	0.6326	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01400003 hypothetical protein (588 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	404
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	4e-13
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	7e-09
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	9e-06

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 55/163 (33%), Positives = 69/163 (42%), Gaps = 19/163 (11%)

Query: 186 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTG-ADITDSGLSILAQG--NLPIMNLC 242
             LE L+L  C    D  L  +S   KL  L L G   I D GL  LAQ   NL +  L 
Sbjct: 28  SGLEWLELYMCPIS-DPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQV--LD 84

Query: 243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPG---ISDDGILTIAAAGIGIIDLCV 299
           LR C+ +TD GI  L     T    L T++LG       I+D  +  +      +  +  
Sbjct: 85  LRACENITDSGIVAL----ATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140

Query: 300 RSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 342
             C  VTD  V  LA        SK L RL L NC  L+  S+
Sbjct: 141 AGCD-VTDKGVWELASG-----CSKSLERLSLNNCRNLTDQSI 177

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 38/191 (19%)

Query: 68  LQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGF 127
           L  L +C+ L  L L           K ++D G+  L++ C  L+ + L     ++D+G 
Sbjct: 45  LDQLSNCNKLKKLILPGS--------KLIDDEGLIALAQSCPNLQVLDLRACENITDSGI 96

Query: 128 AAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSR 186
            A+  +C  L+   +                        R     LIT  ++  L  +  
Sbjct: 97  VALATNCPKLQTINLG-----------------------RHRNGHLITDVSLSALGKNCT 133

Query: 187 NLEVLDLGGCKSIADTCLRSIS--CLRKLTALNLTGA-DITDSGLS-ILAQGNLPIMN-L 241
            L+ +   GC  + D  +  ++  C + L  L+L    ++TD  +  ILA    P ++ L
Sbjct: 134 FLQTVGFAGCD-VTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVL 192

Query: 242 CLRGCKRVTDK 252
             RGC  +TD 
Sbjct: 193 EFRGCPLITDF 203

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 20/152 (13%)

Query: 7   PILTSSYYSSFNLRSL-SLVLD---VITDELLITITASLPFLVELDLEDRPNTEPLARLD 62
           PI         N   L  L+L    +I DE LI +  S P L  LDL         A  +
Sbjct: 39  PISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLR--------ACEN 90

Query: 63  LTSSGLQSLG-SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK 121
           +T SG+ +L  +C  L  ++L R R+ H      + D+ +  L + C  L++V   G   
Sbjct: 91  ITDSGIVALATNCPKLQTINLGRHRNGHL-----ITDVSLSALGKNCTFLQTVGFAG-CD 144

Query: 122 VSDAGFAAILLSC-HSLKKFEVRSASFLSDLA 152
           V+D G   +   C  SL++  + +   L+D +
Sbjct: 145 VTDKGVWELASGCSKSLERLSLNNCRNLTDQS 176

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
KOG4341	483	consensus F-box protein containing LRR [General fu	99.96
KOG4341	483	consensus F-box protein containing LRR [General fu	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.78
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.77
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.55
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.5
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.49
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.4
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.28
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.88
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.86
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.81
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.8
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.72
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.45
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.44
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.31
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.29
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.23
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.21
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.19
KOG4308	478	consensus LRR-containing protein [Function unknown	98.12
KOG4308	478	consensus LRR-containing protein [Function unknown	98.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.95
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.23
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.15
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.96
PLN03150	623	hypothetical protein; Provisional	96.79
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.72
PLN03150	623	hypothetical protein; Provisional	96.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.56
PRK15386	426	type III secretion protein GogB; Provisional	96.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.56
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.76
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.59
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.39
PRK15386	426	type III secretion protein GogB; Provisional	94.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.28
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	93.42
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.63
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.11
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.18
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.06
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.37

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.96  E-value=2e-29  Score=217.58  Aligned_cols=314  Identities=25%  Similarity=0.407  Sum_probs=200.9

Q ss_pred             CCcEEeccC-CCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhc-CCCCCceEEecccccCCCCCccc
Q 015585           18 NLRSLSLVL-DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        18 ~L~~L~L~~-~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      .|+.|.+.| ..+.+..+..+...||++++|++.+|        ..+++..+..++ +|++|++|++..|.        .
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc--------~~iTd~s~~sla~~C~~l~~l~L~~c~--------~  202 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC--------KKITDSSLLSLARYCRKLRHLNLHSCS--------S  202 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcc--------eeccHHHHHHHHHhcchhhhhhhcccc--------h
Confidence            456666664 55555666666666777777766666        455666666653 66667777666553        3


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      +++..+..+...|++|++|++++|+.++..+++.+.++|+.++.+...+|.....+.+..+..+++.+.++++..|..++
T Consensus       203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT  282 (483)
T KOG4341|consen  203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT  282 (483)
T ss_pred             hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence            55666666666677777777777666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          176 SETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       176 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                      ++.+..++ .|..|+.|..++|..+++..+.++. ++++|+.|.+..| ++++.++..+++.++.|+.+++..|..+.+.
T Consensus       283 D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  283 DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence            66655555 4666677777666666666666653 5666777666666 4666666666666667777777666655555


Q ss_pred             HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEE
Q 015585          253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL  329 (404)
Q Consensus       253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L  329 (404)
                      .+..++    ..++.|+.|.+++|..+++.+...+..   +...|+.+.+++|+.+++..+..+..       |++|+++
T Consensus       363 tL~sls----~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-------c~~Leri  431 (483)
T KOG4341|consen  363 TLASLS----RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI-------CRNLERI  431 (483)
T ss_pred             hHhhhc----cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh-------Cccccee
Confidence            555555    566667777777666666665554432   23556666666676666666666663       6667777


Q ss_pred             eccCCCCCCHHHHHhhhcCCCCcccEEecC
Q 015585          330 DLCNCIGLSVDSLRWVKRPSFRGLHWLGIG  359 (404)
Q Consensus       330 ~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~  359 (404)
                      ++.+|..++.+++..+. .++|++++..+-
T Consensus       432 ~l~~~q~vtk~~i~~~~-~~lp~i~v~a~~  460 (483)
T KOG4341|consen  432 ELIDCQDVTKEAISRFA-THLPNIKVHAYF  460 (483)
T ss_pred             eeechhhhhhhhhHHHH-hhCccceehhhc
Confidence            77766666666666665 456666655443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.95  E-value=1.3e-28  Score=212.53  Aligned_cols=338  Identities=22%  Similarity=0.312  Sum_probs=291.0

Q ss_pred             cEEeccC--CCCChHHHHHHHhhC-CCccEEeecCCCCCCcccccccchhhhhhh-cCCCCCceEEecccccCCCCCccc
Q 015585           20 RSLSLVL--DVITDELLITITASL-PFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        20 ~~L~L~~--~~~~~~~~~~i~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      +++|+..  ..+....+..+..+| ..|++|.+++|        ....+..+..+ ..+|++++|++.+|.        .
T Consensus       113 q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~--------r~v~~sslrt~~~~CpnIehL~l~gc~--------~  176 (483)
T KOG4341|consen  113 QHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGC--------RAVGDSSLRTFASNCPNIEHLALYGCK--------K  176 (483)
T ss_pred             eeeehhcchhcCCCcceehHhhhhcccccccccccc--------ccCCcchhhHHhhhCCchhhhhhhcce--------e
Confidence            3444441  333444555555555 47999999998        45666666665 489999999998884        5


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      +++..+..+...|++|++|++..|..+++..++.+.+.|++|++|+++.|+.++..++..+...+..++.+...||...+
T Consensus       177 iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~  256 (483)
T KOG4341|consen  177 ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE  256 (483)
T ss_pred             ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999888998888


Q ss_pred             HHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          176 SETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       176 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                      .+.+..+. .+..+..+++..|+.+++..+..++ .+..|+.|..+++ .+++..+..+.+++++|+.|.+..|..+++.
T Consensus       257 le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~  336 (483)
T KOG4341|consen  257 LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR  336 (483)
T ss_pred             HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence            88877766 6788888888899889998877665 5788999999886 7889999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEecc
Q 015585          253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC  332 (404)
Q Consensus       253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~  332 (404)
                      ++..+.    ..++.|+.+++..|..+++..+..+...|+.|+.|.+++|..++|++++.+....-   +...|+.+.+.
T Consensus       337 ~ft~l~----rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c---~~~~l~~lEL~  409 (483)
T KOG4341|consen  337 GFTMLG----RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC---SLEGLEVLELD  409 (483)
T ss_pred             hhhhhh----cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc---cccccceeeec
Confidence            999888    89999999999999888888899999999999999999999999999999987655   67899999999


Q ss_pred             CCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEE
Q 015585          333 NCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFC  384 (404)
Q Consensus       333 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~  384 (404)
                      +|+.+++...+.+.  .|+.|+.+++-++.-.  ..+.+.+++..+|++++.
T Consensus       410 n~p~i~d~~Le~l~--~c~~Leri~l~~~q~v--tk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  410 NCPLITDATLEHLS--ICRNLERIELIDCQDV--TKEAISRFATHLPNIKVH  457 (483)
T ss_pred             CCCCchHHHHHHHh--hCcccceeeeechhhh--hhhhhHHHHhhCccceeh
Confidence            99999999999987  4999999998887743  678899999999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=1.7e-19  Score=186.64  Aligned_cols=330  Identities=16%  Similarity=0.122  Sum_probs=155.1

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      +..+++|+.|+|+++.+....+..+...+++|++|++++|...         ..  ...+.+++|++|+++++.      
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~---------~~--~p~~~l~~L~~L~Ls~n~------  151 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT---------GS--IPRGSIPNLETLDLSNNM------  151 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc---------cc--cCccccCCCCEEECcCCc------
Confidence            4556666666666655554444444434666666666665221         00  001234556666665532      


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR  172 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  172 (404)
                         +... +......+++|+.|+++++. +... +...+..+++|+.|+++++.. .. .+......+++|+.|+++++.
T Consensus       152 ---~~~~-~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~n~l-~~-~~p~~l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        152 ---LSGE-IPNDIGSFSSLKVLDLGGNV-LVGK-IPNSLTNLTSLEFLTLASNQL-VG-QIPRELGQMKSLKWIYLGYNN  223 (968)
T ss_pred             ---cccc-CChHHhcCCCCCEEECccCc-cccc-CChhhhhCcCCCeeeccCCCC-cC-cCChHHcCcCCccEEECcCCc
Confidence               1111 11112345666666666642 2111 111234456666666666642 11 111222355666666666553


Q ss_pred             CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                       +.......+..+++|++|++++| .+.......+..+++|++|++.+|.+.+.....+. .+++|++|++++|. +...
T Consensus       224 -l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~~  299 (968)
T PLN00113        224 -LSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNS-LSGE  299 (968)
T ss_pred             -cCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCe-eccC
Confidence             22222233455666666666663 33333334455566666666666655432222222 35566666666554 2221


Q ss_pred             HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEecc
Q 015585          253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC  332 (404)
Q Consensus       253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~  332 (404)
                      ....+     ..+++|++|+++++ .+.......+ ..+++|+.|++++|. ++......+.       .+++|+.|+++
T Consensus       300 ~p~~~-----~~l~~L~~L~l~~n-~~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~p~~l~-------~~~~L~~L~Ls  364 (968)
T PLN00113        300 IPELV-----IQLQNLEILHLFSN-NFTGKIPVAL-TSLPRLQVLQLWSNK-FSGEIPKNLG-------KHNNLTVLDLS  364 (968)
T ss_pred             CChhH-----cCCCCCcEEECCCC-ccCCcCChhH-hcCCCCCEEECcCCC-CcCcCChHHh-------CCCCCcEEECC
Confidence            11111     24456666666554 2222111111 234566666665553 3322222222       24555555555


Q ss_pred             CCC-----------------------CCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccc
Q 015585          333 NCI-----------------------GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGC  388 (404)
Q Consensus       333 ~~~-----------------------~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~  388 (404)
                      +|.                       .++......+.  .+++|+.|++++|.+++...   ..+ ...|.++ +++.+|
T Consensus       365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~l~~~~p---~~~-~~l~~L~~L~Ls~N  438 (968)
T PLN00113        365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELP---SEF-TKLPLVYFLDISNN  438 (968)
T ss_pred             CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh--CCCCCCEEECcCCEeeeECC---hhH-hcCCCCCEEECcCC
Confidence            431                       22211111222  36677777777777653211   122 4566676 777777


Q ss_pred             cccc
Q 015585          389 EIGC  392 (404)
Q Consensus       389 ~~~~  392 (404)
                      .+..
T Consensus       439 ~l~~  442 (968)
T PLN00113        439 NLQG  442 (968)
T ss_pred             cccC
Confidence            6654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=1.6e-19  Score=186.73  Aligned_cols=61  Identities=30%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC   85 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   85 (404)
                      +..+++|++|+|+++.+....+.   ..+++|++|++++|.         +.......++.+++|++|+++++
T Consensus       114 ~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~---------~~~~~p~~~~~l~~L~~L~L~~n  174 (968)
T PLN00113        114 FTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM---------LSGEIPNDIGSFSSLKVLDLGGN  174 (968)
T ss_pred             hccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCc---------ccccCChHHhcCCCCCEEECccC
Confidence            34677788888877666533221   235677777777652         22222233455666666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.80  E-value=3.3e-17  Score=148.30  Aligned_cols=167  Identities=26%  Similarity=0.311  Sum_probs=77.9

Q ss_pred             CCCCEEeccCCCCCChHHH----HhhhCCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHH
Q 015585          186 RNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLL  258 (404)
Q Consensus       186 ~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~  258 (404)
                      ++|++|++++| .++....    ..+..+++|++|++++|.+++.++..++.   .+++|++|++++|. +++.+...+.
T Consensus       137 ~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~  214 (319)
T cd00116         137 PALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA  214 (319)
T ss_pred             CCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH
Confidence            55566666554 3332221    12234455666666665555544444332   22356666665554 4443333221


Q ss_pred             hhcCCCCCCccEEecCCCCCCCHHHHHHHHHhC----CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585          259 CVGGTISQSLTTLDLGYMPGISDDGILTIAAAG----IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC  334 (404)
Q Consensus       259 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~  334 (404)
                      . ....+++|++|+++++ .+++.++..+...+    +.|++|++.+|. +++.+...++..++   .+++|+.+++++ 
T Consensus       215 ~-~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~---~~~~L~~l~l~~-  287 (319)
T cd00116         215 E-TLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLA---EKESLLELDLRG-  287 (319)
T ss_pred             H-HhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHh---cCCCccEEECCC-
Confidence            0 0023455666666554 45554444444332    456666665553 55544544444333   345555555555 


Q ss_pred             CCCCHHHHHhhhc--CCC-CcccEEecCCc
Q 015585          335 IGLSVDSLRWVKR--PSF-RGLHWLGIGQT  361 (404)
Q Consensus       335 ~~i~~~~~~~l~~--~~~-~~L~~L~l~~~  361 (404)
                      +.++..+...+++  ... +.|+.+++.++
T Consensus       288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         288 NKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             CCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            3455443333321  112 35555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.78  E-value=6.4e-17  Score=146.41  Aligned_cols=280  Identities=22%  Similarity=0.189  Sum_probs=182.5

Q ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHH---HHHHHhCCCCcEEEecCCCCCC-HHH---HHHHHcCCCCccEEEccCCCC
Q 015585          101 MFLLSEGCKGLESVRLGGFSKVSDAGF---AAILLSCHSLKKFEVRSASFLS-DLA---FHDLTGVPCALVEVRLLWCRL  173 (404)
Q Consensus       101 l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~-~~~---l~~~~~~~~~L~~L~l~~~~~  173 (404)
                      ...+...+++|+.++++++ .+++.+.   ...+...++|++++++++.... ...   +......+++|+.|+++++..
T Consensus        15 ~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          15 ATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             hHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            3344445566888888774 5544443   3334455668888887764221 122   223334577899999988763


Q ss_pred             CCHHHHHHhhC---CCCCCEEeccCCCCCChHHHHh----hhCC-CCCCEEEccCCccCHHHHHHHH---hcCCCcCEEe
Q 015585          174 ITSETVKKLAS---SRNLEVLDLGGCKSIADTCLRS----ISCL-RKLTALNLTGADITDSGLSILA---QGNLPIMNLC  242 (404)
Q Consensus       174 ~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~l~~l~---~~~~~L~~L~  242 (404)
                       .......+..   .++|++|++++| .+.+.....    +..+ ++|+.|++++|.+++.+...+.   ..+++|++|+
T Consensus        94 -~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~  171 (319)
T cd00116          94 -GPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN  171 (319)
T ss_pred             -ChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence             3222223332   256999999986 566444433    3456 8999999999999865544443   3567899999


Q ss_pred             ecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHH---HHhCCCCceEeecCCCCCCHHHHHHHHhhCCC
Q 015585          243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI---AAAGIGIIDLCVRSCFYVTDASVEALARKQPD  319 (404)
Q Consensus       243 l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  319 (404)
                      +++|. +++.++..+... -...+.|++|+++++ .+++.+...+   ...+++|+.|++++|. +++.++..++...+.
T Consensus       172 l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~  247 (319)
T cd00116         172 LANNG-IGDAGIRALAEG-LKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS  247 (319)
T ss_pred             CcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc
Confidence            99987 776655544310 023469999999997 6776665443   3457899999999995 898888888763220


Q ss_pred             cccCCCCcEEeccCCCCCCHHHHHhhh--cCCCCcccEEecCCccccCCChHHHHHHHhcC-CccE-EEeccccc
Q 015585          320 QEKSKQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASKGNPVITEIHNER-PWLT-FCLDGCEI  390 (404)
Q Consensus       320 ~~~~~~L~~L~l~~~~~i~~~~~~~l~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~l~-l~~~~~~~  390 (404)
                        ..+.|+.|++.+| .+++.+...+.  .+.+++|+++++++|.+...+.+.+....... +.++ +++.++++
T Consensus       248 --~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         248 --PNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             --cCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence              1479999999996 77755554442  23468999999999999654444444443344 5666 77776654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.77  E-value=3.8e-20  Score=166.83  Aligned_cols=337  Identities=18%  Similarity=0.157  Sum_probs=201.4

Q ss_pred             ccccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccC
Q 015585            9 LTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHN   88 (404)
Q Consensus         9 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~   88 (404)
                      .+..|..+++|+++.+..|.++  .++.++....+|+.|+|.+|.         ++...-+.++.++.||.|||+.+.. 
T Consensus        94 d~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~---------I~sv~se~L~~l~alrslDLSrN~i-  161 (873)
T KOG4194|consen   94 DFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNL---------ISSVTSEELSALPALRSLDLSRNLI-  161 (873)
T ss_pred             cHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccc---------cccccHHHHHhHhhhhhhhhhhchh-
Confidence            4456789999999999988776  345555557789999999974         3344445566777788888876421 


Q ss_pred             CCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEc
Q 015585           89 HQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRL  168 (404)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l  168 (404)
                           ..+....+    ..-+++++|+++++ .++.-+... +..+.+|..|.++.+. ++.-... .+..++.|+.|++
T Consensus       162 -----s~i~~~sf----p~~~ni~~L~La~N-~It~l~~~~-F~~lnsL~tlkLsrNr-ittLp~r-~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  162 -----SEIPKPSF----PAKVNIKKLNLASN-RITTLETGH-FDSLNSLLTLKLSRNR-ITTLPQR-SFKRLPKLESLDL  228 (873)
T ss_pred             -----hcccCCCC----CCCCCceEEeeccc-ccccccccc-ccccchheeeecccCc-ccccCHH-Hhhhcchhhhhhc
Confidence                 11111111    12245666666653 333322222 1222345555555443 1111111 1123444444444


Q ss_pred             cCCCCCCHHHHH------------------------HhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585          169 LWCRLITSETVK------------------------KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT  224 (404)
Q Consensus       169 ~~~~~~~~~~~~------------------------~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  224 (404)
                      ..+. +......                        ++..+.++++|++.. +.+....-..+-.++.|+.|+++.|.+.
T Consensus       229 nrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  229 NRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             cccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhh
Confidence            3321 1111011                        122466677777766 3444444344456788888888888665


Q ss_pred             HHHHHHHHhcCCCcCEEeecCCC--CCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCC
Q 015585          225 DSGLSILAQGNLPIMNLCLRGCK--RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSC  302 (404)
Q Consensus       225 ~~~l~~l~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~  302 (404)
                      ......+. .+++|+.|+++++.  .+.+..+..+        ..|++|.+++. .++...- .....+.+|++|+|++|
T Consensus       307 rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L--------~~Le~LnLs~N-si~~l~e-~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  307 RIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVL--------SQLEELNLSHN-SIDHLAE-GAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             eeecchhh-hcccceeEeccccccccCChhHHHHH--------HHhhhhccccc-chHHHHh-hHHHHhhhhhhhcCcCC
Confidence            54444444 47899999998876  2333444443        48999999884 5544221 22234689999999888


Q ss_pred             CCCC---HHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCC
Q 015585          303 FYVT---DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERP  379 (404)
Q Consensus       303 ~~~~---~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  379 (404)
                      . ++   +++...+.       +++.|++|.+.+ +++.....+.+.  .++.|+.|++.+|.+.++..+++..+  .+.
T Consensus       376 ~-ls~~IEDaa~~f~-------gl~~LrkL~l~g-Nqlk~I~krAfs--gl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk  442 (873)
T KOG4194|consen  376 E-LSWCIEDAAVAFN-------GLPSLRKLRLTG-NQLKSIPKRAFS--GLEALEHLDLGDNAIASIQPNAFEPM--ELK  442 (873)
T ss_pred             e-EEEEEecchhhhc-------cchhhhheeecC-ceeeecchhhhc--cCcccceecCCCCcceeecccccccc--hhh
Confidence            5 33   22333333       589999999999 688877777775  69999999999999988877777766  445


Q ss_pred             ccEEEeccccccccCCc
Q 015585          380 WLTFCLDGCEIGCHDGW  396 (404)
Q Consensus       380 ~l~l~~~~~~~~~~~~~  396 (404)
                      .+.+.-.+.-.+|.-.|
T Consensus       443 ~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  443 ELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             hhhhcccceEEeccHHH
Confidence            55444444444555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=2.1e-19  Score=162.15  Aligned_cols=326  Identities=20%  Similarity=0.182  Sum_probs=170.9

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhc-CCCCCceEEecccccCCCCCccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      +..+.|++++|.+.+..+..+.. +|+|+++.+..|.         +  ..++.++ ...+|+.|+|.++.      ...
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~n-l~nLq~v~l~~N~---------L--t~IP~f~~~sghl~~L~L~~N~------I~s  139 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYN-LPNLQEVNLNKNE---------L--TRIPRFGHESGHLEKLDLRHNL------ISS  139 (873)
T ss_pred             cceeeeeccccccccCcHHHHhc-CCcceeeeeccch---------h--hhcccccccccceeEEeeeccc------ccc
Confidence            34556888888888777766654 8888888888762         2  2233333 45568888887742      233


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      ++.+.+    ...|.|+.||++.+ .++......+ ..-.++++|+++++. ++.-....+ ..+.+|..|.++.+. ++
T Consensus       140 v~se~L----~~l~alrslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrNr-it  210 (873)
T KOG4194|consen  140 VTSEEL----SALPALRSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRNR-IT  210 (873)
T ss_pred             ccHHHH----HhHhhhhhhhhhhc-hhhcccCCCC-CCCCCceEEeecccc-ccccccccc-cccchheeeecccCc-cc
Confidence            444444    34568888888873 4433221111 112578888888885 333222221 244578888888754 44


Q ss_pred             HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC---HHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT---DSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~---~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                      .-....+..+++|+.|++.. +.+.....-.+..+++|+.|.+..|++.   |..    +..+.++++|++..+. +...
T Consensus       211 tLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N~-l~~v  284 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETNR-LQAV  284 (873)
T ss_pred             ccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccccCcc----eeeecccceeecccch-hhhh
Confidence            44455556688888888866 3444333334445556666655555332   111    1134455555554443 2221


Q ss_pred             HHHHHH-------------------hhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHH
Q 015585          253 GISHLL-------------------CVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL  313 (404)
Q Consensus       253 ~~~~l~-------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l  313 (404)
                      .-..+.                   ...=..+++|+.|+++.. .++.-.-..+ ..+..|++|.|++|. ++...-.++
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~Ns-i~~l~e~af  361 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSHNS-IDHLAEGAF  361 (873)
T ss_pred             hcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCChhHH-HHHHHhhhhcccccc-hHHHHhhHH
Confidence            111111                   000012345555555442 3322111111 112345555555553 322211111


Q ss_pred             HhhCCCcccCCCCcEEeccCCCCCC----HHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccc
Q 015585          314 ARKQPDQEKSKQLRRLDLCNCIGLS----VDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGC  388 (404)
Q Consensus       314 ~~~~~~~~~~~~L~~L~l~~~~~i~----~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~  388 (404)
                      -       ++++|+.|++.+ +.++    +.+ ..+  ..+++|+.|.+-||.+..+..   .++ .+++.++ +++.+|
T Consensus       362 ~-------~lssL~~LdLr~-N~ls~~IEDaa-~~f--~gl~~LrkL~l~gNqlk~I~k---rAf-sgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  362 V-------GLSSLHKLDLRS-NELSWCIEDAA-VAF--NGLPSLRKLRLTGNQLKSIPK---RAF-SGLEALEHLDLGDN  426 (873)
T ss_pred             H-------HhhhhhhhcCcC-CeEEEEEecch-hhh--ccchhhhheeecCceeeecch---hhh-ccCcccceecCCCC
Confidence            1       366777777776 3332    322 222  247888888888888754422   333 5667787 888888


Q ss_pred             ccccc
Q 015585          389 EIGCH  393 (404)
Q Consensus       389 ~~~~~  393 (404)
                      ++...
T Consensus       427 aiaSI  431 (873)
T KOG4194|consen  427 AIASI  431 (873)
T ss_pred             cceee
Confidence            87654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=6.8e-17  Score=134.55  Aligned_cols=264  Identities=17%  Similarity=0.224  Sum_probs=196.6

Q ss_pred             CcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcC-CCCccEEEccCCCCCCHHHHHH-hhCCCCC
Q 015585          111 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGV-PCALVEVRLLWCRLITSETVKK-LASSRNL  188 (404)
Q Consensus       111 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L  188 (404)
                      -+.+|+.+ ..+....+.++.+  .....+++...- ..+..+...+.. -..|+.++++... ++-..+.. +++|++|
T Consensus       138 W~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~s~-it~stl~~iLs~C~kL  212 (419)
T KOG2120|consen  138 WQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSNSV-ITVSTLHGILSQCSKL  212 (419)
T ss_pred             eeeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcchhh-eeHHHHHHHHHHHHhh
Confidence            34456655 4555544555443  344455554331 122222222211 2458899998743 66555544 4589999


Q ss_pred             CEEeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCC
Q 015585          189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS  267 (404)
Q Consensus       189 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~  267 (404)
                      +.|.+.+ ..+.+.....++...+|+.|+++.+ +++..++..+...|..|..|++++|...++. +..+..   .--++
T Consensus       213 k~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~---hise~  287 (419)
T KOG2120|consen  213 KNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVA---HISET  287 (419)
T ss_pred             hhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHh---hhchh
Confidence            9999999 5889999999999999999999987 8999999999999999999999999854444 333321   34578


Q ss_pred             ccEEecCCCC-CCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh
Q 015585          268 LTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK  346 (404)
Q Consensus       268 L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~  346 (404)
                      |..|+++++. ++....+..+.+.||+|.+|++++|..+++..+..+.+       ++.|++|.++.|..|.+..+-.+.
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-------f~~L~~lSlsRCY~i~p~~~~~l~  360 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-------FNYLQHLSLSRCYDIIPETLLELN  360 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-------cchheeeehhhhcCCChHHeeeec
Confidence            9999999984 44556678888899999999999999999988888885       999999999999999988887775


Q ss_pred             cCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEeccccccccCCcc
Q 015585          347 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQ  397 (404)
Q Consensus       347 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~  397 (404)
                        ..|+|.+|++-|+.    .+.+++-+.+.+|.+++..-...+-+.+--+
T Consensus       361 --s~psl~yLdv~g~v----sdt~mel~~e~~~~lkin~q~~~~iarpv~~  405 (419)
T KOG2120|consen  361 --SKPSLVYLDVFGCV----SDTTMELLKEMLSHLKINCQHFNFIARPVSG  405 (419)
T ss_pred             --cCcceEEEEecccc----CchHHHHHHHhCccccccceeeeeeeccccc
Confidence              59999999999998    6778888999999998765555555544333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.1e-16  Score=133.38  Aligned_cols=203  Identities=19%  Similarity=0.255  Sum_probs=142.2

Q ss_pred             CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccC
Q 015585           18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN   97 (404)
Q Consensus        18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   97 (404)
                      .|+++||+...++...+..+...|..|+.|.+.+.         .+.+.....+++-.+|+.|++++|.        +++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~---------~LdD~I~~~iAkN~~L~~lnlsm~s--------G~t  248 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL---------RLDDPIVNTIAKNSNLVRLNLSMCS--------GFT  248 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc---------ccCcHHHHHHhccccceeecccccc--------ccc
Confidence            47788888878888888888777888888888884         5666666667777788888887773        467


Q ss_pred             hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHH-hCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585           98 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL-SCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus        98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      ..++..+...|..|.+|++++|...++. +..++. --++|+.|+++|+. .+....+..+...||+|.+|+++.|..+.
T Consensus       249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  249 ENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             hhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            7777777778888888888887555544 333332 33677888888773 23344566677778888888888877777


Q ss_pred             HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585          176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM  239 (404)
Q Consensus       176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~  239 (404)
                      +..+..+.+++.|++|.++.|..+....+..+...|.|.+|++.++ ++|..+..+.+.+++|+
T Consensus       328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~-vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC-VSDTTMELLKEMLSHLK  390 (419)
T ss_pred             chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc-cCchHHHHHHHhCcccc
Confidence            7777777778888888888877777777767777777777777664 33334444444455543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.56  E-value=3.9e-14  Score=120.87  Aligned_cols=254  Identities=21%  Similarity=0.258  Sum_probs=158.2

Q ss_pred             hCCCccEEeecCCCCCCcccccccchhhhhh----hcCCCCCceEEecccccCCCCCccccCh---hhHHHH---HhcCC
Q 015585           40 SLPFLVELDLEDRPNTEPLARLDLTSSGLQS----LGSCHHLTGLSLTRCRHNHQGTFKRVND---MGMFLL---SEGCK  109 (404)
Q Consensus        40 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~l~~l---~~~~~  109 (404)
                      ....++++++++|         .+.....+.    ++..++|+..++++..      -.+..+   ..+..+   ...+|
T Consensus        28 ~~~s~~~l~lsgn---------t~G~EAa~~i~~~L~~~~~L~~v~~sd~f------tGR~~~Ei~e~L~~l~~aL~~~~   92 (382)
T KOG1909|consen   28 PMDSLTKLDLSGN---------TFGTEAARAIAKVLASKKELREVNLSDMF------TGRLKDEIPEALKMLSKALLGCP   92 (382)
T ss_pred             ccCceEEEeccCC---------chhHHHHHHHHHHHhhcccceeeehHhhh------cCCcHHHHHHHHHHHHHHHhcCC
Confidence            3566777777775         233333333    3455666766665521      011111   112222   24567


Q ss_pred             CCcEEEcCCCCCCC---HHHHHHHHHhCCCCcEEEecCCCCCCHHHH------------HHHHcCCCCccEEEccCCCCC
Q 015585          110 GLESVRLGGFSKVS---DAGFAAILLSCHSLKKFEVRSASFLSDLAF------------HDLTGVPCALVEVRLLWCRLI  174 (404)
Q Consensus       110 ~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l------------~~~~~~~~~L~~L~l~~~~~~  174 (404)
                      +|+.|+||++ .+.   ..++..+++.|..|++|.+.+|. +....-            .......+.|+.+....+. +
T Consensus        93 ~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-l  169 (382)
T KOG1909|consen   93 KLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-L  169 (382)
T ss_pred             ceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-c
Confidence            8888888774 333   33556667777888888887774 322211            1122345788888887754 4


Q ss_pred             CHHHHHHhh----CCCCCCEEeccCCCCCChHHHH----hhhCCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEEee
Q 015585          175 TSETVKKLA----SSRNLEVLDLGGCKSIADTCLR----SISCLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCL  243 (404)
Q Consensus       175 ~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L~l  243 (404)
                      .+.+...++    .++.|+.+.+.. +.+...++.    .+.++++|+.|++.+|.++..+-..++.   .+++|+.|++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            444444444    568899998887 466655553    3458899999999998888776666655   4567888888


Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCC--CHHHHHHHHh
Q 015585          244 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYV--TDASVEALAR  315 (404)
Q Consensus       244 ~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~--~~~~~~~l~~  315 (404)
                      ++|- +...+...+..+.....|.|+.|.+.++ .++..+...+.   ...|.|+.|++.+|. +  .++++..++.
T Consensus       249 ~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~ei~~  322 (382)
T KOG1909|consen  249 GDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDEIAS  322 (382)
T ss_pred             cccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHHHHH
Confidence            8886 6555555444333356788999999886 67665543332   225889999999885 6  6677777776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.55  E-value=3.9e-14  Score=135.79  Aligned_cols=241  Identities=25%  Similarity=0.424  Sum_probs=118.6

Q ss_pred             CCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCC-CCCCCHH--HHHHHHHhCCCCcEEEecCCCCCC
Q 015585           73 SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGG-FSKVSDA--GFAAILLSCHSLKKFEVRSASFLS  149 (404)
Q Consensus        73 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~  149 (404)
                      .++.|+.|.+.+|.        .+.+.++..+...+++|+.|++++ +......  ....+...|++|+.|+++.+..++
T Consensus       186 ~~~~L~~l~l~~~~--------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCS--------KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             hCchhhHhhhcccc--------cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence            45666666665542        244444445555566666666654 2222221  122344555666666666665556


Q ss_pred             HHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEccCCc----c
Q 015585          150 DLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGAD----I  223 (404)
Q Consensus       150 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~----l  223 (404)
                      +..+..+...|++|+.|.+.+|..+++.++..++ .|+.|++|++++|..+++..+..+. .+++++.|.+....    +
T Consensus       258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l  337 (482)
T KOG1947|consen  258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSL  337 (482)
T ss_pred             chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccH
Confidence            6666666555666666665555555556655555 4566666666666555555444432 35555554433321    2


Q ss_pred             CH------------HHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhC
Q 015585          224 TD------------SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG  291 (404)
Q Consensus       224 ~~------------~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  291 (404)
                      ++            .........+++++.+.+..+. ..+.+.               .+.+.+|+.++ ..+......+
T Consensus       338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~---------------~~~l~gc~~l~-~~l~~~~~~~  400 (482)
T KOG1947|consen  338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL---------------ELSLRGCPNLT-ESLELRLCRS  400 (482)
T ss_pred             HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch---------------HHHhcCCcccc-hHHHHHhccC
Confidence            22            2222223334444444443333 222222               22223333333 3333332233


Q ss_pred             CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHh
Q 015585          292 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW  344 (404)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~  344 (404)
                      ..++.|.+..|..+++..+.....      .+.+++.+++.+|..++......
T Consensus       401 ~~l~~L~l~~~~~~t~~~l~~~~~------~~~~~~~l~~~~~~~~~~~~~~~  447 (482)
T KOG1947|consen  401 DSLRVLNLSDCRLVTDKGLRCLAD------SCSNLKDLDLSGCRVITLKSLEG  447 (482)
T ss_pred             CccceEecccCccccccchHHHhh------hhhccccCCccCcccccchhhhh
Confidence            336666666666666666665554      35556666666666665555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.54  E-value=1.4e-13  Score=117.47  Aligned_cols=270  Identities=18%  Similarity=0.184  Sum_probs=178.9

Q ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHH---HHHHHhCCCCcEEEecCC--CCCCHH------HHHHHHcCCCCccEEEcc
Q 015585          101 MFLLSEGCKGLESVRLGGFSKVSDAGF---AAILLSCHSLKKFEVRSA--SFLSDL------AFHDLTGVPCALVEVRLL  169 (404)
Q Consensus       101 l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~--~~~~~~------~l~~~~~~~~~L~~L~l~  169 (404)
                      +.........+++++++++ .+.....   ...+...++|+..++++.  ..+...      .+......+|.|+.|+++
T Consensus        22 v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS  100 (382)
T ss_pred             HHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence            3333455678999999995 4444433   333455577888777765  111111      123334567899999999


Q ss_pred             CCCCCCHHHHHHh----hCCCCCCEEeccCCCCCChHHHHhh-------------hCCCCCCEEEccCCccCHHHHHHHH
Q 015585          170 WCRLITSETVKKL----ASSRNLEVLDLGGCKSIADTCLRSI-------------SCLRKLTALNLTGADITDSGLSILA  232 (404)
Q Consensus       170 ~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~l~~~~l~~l~  232 (404)
                      .+. +...+++.+    .+|..|++|.|.+| +++..+-..+             +..++|+.+..++|++.+.+-..++
T Consensus       101 DNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A  178 (382)
T KOG1909|consen  101 DNA-FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA  178 (382)
T ss_pred             ccc-cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH
Confidence            875 455555543    37899999999987 5655443332             2467899999999988777665554


Q ss_pred             ---hcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCC
Q 015585          233 ---QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVT  306 (404)
Q Consensus       233 ---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~  306 (404)
                         +.++.|+.+.+..+. +...++..+.. ....+|+|+.|++.+. -.+..+-..+.   ..+++|++|.+++| .+.
T Consensus       179 ~~~~~~~~leevr~~qN~-I~~eG~~al~e-al~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-ll~  254 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNG-IRPEGVTALAE-ALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-LLE  254 (382)
T ss_pred             HHHHhccccceEEEeccc-ccCchhHHHHH-HHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-ccc
Confidence               366889999988776 55555422211 1147889999999884 45554433333   34678889999999 477


Q ss_pred             HHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc--CCCCcccEEecCCccccCCChHHHHHHHhcCCcc
Q 015585          307 DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR--PSFRGLHWLGIGQTRLASKGNPVITEIHNERPWL  381 (404)
Q Consensus       307 ~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l  381 (404)
                      ..|..++...+..  ..|+|+.|.+.+ +.|+..+...+..  ...|.|+.|++++|.+. ..++.+..++...+..
T Consensus       255 ~~Ga~a~~~al~~--~~p~L~vl~l~g-NeIt~da~~~la~~~~ek~dL~kLnLngN~l~-e~de~i~ei~~~~~~~  327 (382)
T KOG1909|consen  255 NEGAIAFVDALKE--SAPSLEVLELAG-NEITRDAALALAACMAEKPDLEKLNLNGNRLG-EKDEGIDEIASKFDTA  327 (382)
T ss_pred             cccHHHHHHHHhc--cCCCCceeccCc-chhHHHHHHHHHHHHhcchhhHHhcCCccccc-ccchhHHHHHHhcccc
Confidence            6666666554442  578999999999 4788766665531  23789999999999986 4577777777666543

>PLN03210 Resistant to P

Probab=99.50  E-value=7.9e-14  Score=145.33  Aligned_cols=128  Identities=20%  Similarity=0.168  Sum_probs=73.9

Q ss_pred             CCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH
Q 015585          210 LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA  289 (404)
Q Consensus       210 ~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~  289 (404)
                      .++|+.|++++|......... ...+++|+.|++++|..+...     .  ....+++|+.|++++|..+..     +..
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~~L~~L-----P--~~~~L~sL~~L~Ls~c~~L~~-----~p~  843 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCINLETL-----P--TGINLESLESLDLSGCSRLRT-----FPD  843 (1153)
T ss_pred             cccchheeCCCCCCccccChh-hhCCCCCCEEECCCCCCcCee-----C--CCCCccccCEEECCCCCcccc-----ccc
Confidence            457777777776322211112 235778888888877644321     1  012467788888888765432     112


Q ss_pred             hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          290 AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      ..++|+.|+++++. ++... ..+.       .+++|+.|++.+|++++.....   ...+++|+.+++++|.
T Consensus       844 ~~~nL~~L~Ls~n~-i~~iP-~si~-------~l~~L~~L~L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 ISTNISDLNLSRTG-IEEVP-WWIE-------KFSNLSFLDMNGCNNLQRVSLN---ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccCEeECCCCC-CccCh-HHHh-------cCCCCCEEECCCCCCcCccCcc---cccccCCCeeecCCCc
Confidence            23577888887764 44211 1222       4778888888888877653221   1236677777777664

syringae 6; Provisional

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.49  E-value=1.8e-13  Score=131.23  Aligned_cols=222  Identities=30%  Similarity=0.425  Sum_probs=99.7

Q ss_pred             HHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccC-CCCCCHHH--HHHhh-CCCCCCEEeccCCCCCChHHHHh
Q 015585          131 LLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW-CRLITSET--VKKLA-SSRNLEVLDLGGCKSIADTCLRS  206 (404)
Q Consensus       131 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~l~-~~~~L~~L~l~~~~~~~~~~~~~  206 (404)
                      ...++.|+.+.+.++..++...+..+...++.|++|++++ +.......  ...+. .|++|+.|++++|..+++..+..
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            3334455555555444444444444444445555555444 11111111  11111 34445555555443344444444


Q ss_pred             hhC-CCCCCEEEccCCc-cCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC---CCCCH
Q 015585          207 ISC-LRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM---PGISD  281 (404)
Q Consensus       207 l~~-~~~L~~L~l~~~~-l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~---~~l~~  281 (404)
                      ++. +++|+.|.+..+. +++.++..++..+++|++|++++|..+++.++....    ..+++++.|.+..+   ..+++
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~----~~c~~l~~l~~~~~~~c~~l~~  339 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL----KNCPNLRELKLLSLNGCPSLTD  339 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH----HhCcchhhhhhhhcCCCccHHH
Confidence            432 4455555544443 455555555554555555555555444444444333    23343333332222   12222


Q ss_pred             HHHH------------HHHHhCCCCceEee--------------cCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585          282 DGIL------------TIAAAGIGIIDLCV--------------RSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI  335 (404)
Q Consensus       282 ~~~~------------~l~~~~~~L~~L~l--------------~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~  335 (404)
                      ..+.            ...+.|++++.+.+              .+|+.++ ..+.....      .+..++.|+++.|.
T Consensus       340 ~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~------~~~~l~~L~l~~~~  412 (482)
T KOG1947|consen  340 LSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC------RSDSLRVLNLSDCR  412 (482)
T ss_pred             HHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc------cCCccceEecccCc
Confidence            2211            11222333333333              3444443 33333332      23335777888877


Q ss_pred             CCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          336 GLSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       336 ~i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      .++...+...... +..++.+++.++...
T Consensus       413 ~~t~~~l~~~~~~-~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  413 LVTDKGLRCLADS-CSNLKDLDLSGCRVI  440 (482)
T ss_pred             cccccchHHHhhh-hhccccCCccCcccc
Confidence            7777777666522 666777777776643

>PLN03210 Resistant to P

Probab=99.43  E-value=4.8e-13  Score=139.51  Aligned_cols=104  Identities=14%  Similarity=0.228  Sum_probs=51.5

Q ss_pred             CCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHH
Q 015585          235 NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALA  314 (404)
Q Consensus       235 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (404)
                      +++|+.|.+++|..+.... ..+     ..+++|+.|++++|..+......   ..+++|+.|++++|..+.     .+.
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP-~si-----~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~-----~~p  842 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELP-SSI-----QNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLR-----TFP  842 (1153)
T ss_pred             cccchheeCCCCCCccccC-hhh-----hCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccc-----ccc
Confidence            3456666666654322211 111     24566666666666544321100   024566666666665332     111


Q ss_pred             hhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          315 RKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       315 ~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      .      ...+|+.|+++++ .++.... .+  ..+++|+.|++++|.
T Consensus       843 ~------~~~nL~~L~Ls~n-~i~~iP~-si--~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        843 D------ISTNISDLNLSRT-GIEEVPW-WI--EKFSNLSFLDMNGCN  880 (1153)
T ss_pred             c------cccccCEeECCCC-CCccChH-HH--hcCCCCCEEECCCCC
Confidence            1      2346677777663 4443211 12  247778888887754

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.40  E-value=4.4e-15  Score=135.78  Aligned_cols=332  Identities=16%  Similarity=0.121  Sum_probs=160.3

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCccc-c-------------cccchhhhh-hhcCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLA-R-------------LDLTSSGLQ-SLGSCHHL   77 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~-~-------------~~~~~~~~~-~l~~~~~L   77 (404)
                      ....+.+++|.|....+. ..+..++. +.+|++|.+.+|+..+... .             .++...+++ .|-.++.|
T Consensus        28 v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL  105 (1255)
T KOG0444|consen   28 VEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL  105 (1255)
T ss_pred             HHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccc
Confidence            445667788888765544 23444443 7777777777753211000 0             011112211 12334445


Q ss_pred             ceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHH
Q 015585           78 TGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLT  157 (404)
Q Consensus        78 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~  157 (404)
                      ..|+++++.      ++.+ +..+    ....++-.|+++++ ++... ..+++-++.-|-.|+++++..   ..++...
T Consensus       106 t~lDLShNq------L~Ev-P~~L----E~AKn~iVLNLS~N-~IetI-Pn~lfinLtDLLfLDLS~NrL---e~LPPQ~  169 (1255)
T KOG0444|consen  106 TILDLSHNQ------LREV-PTNL----EYAKNSIVLNLSYN-NIETI-PNSLFINLTDLLFLDLSNNRL---EMLPPQI  169 (1255)
T ss_pred             eeeecchhh------hhhc-chhh----hhhcCcEEEEcccC-ccccC-CchHHHhhHhHhhhccccchh---hhcCHHH
Confidence            555554421      0001 0111    12234445555542 22111 011222233444455555431   2233333


Q ss_pred             cCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCC
Q 015585          158 GVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP  237 (404)
Q Consensus       158 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~  237 (404)
                      .++..|++|.++++. +....+..++.+..|++|.+++....-+.....+..+.+|..++++.|+++-  +..-...+++
T Consensus       170 RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~--vPecly~l~~  246 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI--VPECLYKLRN  246 (1255)
T ss_pred             HHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc--chHHHhhhhh
Confidence            455667777777754 4444455556666777777776433222233344556777788887776542  1111224677


Q ss_pred             cCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhC
Q 015585          238 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ  317 (404)
Q Consensus       238 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  317 (404)
                      |+.|+++++. ++...+..      ..+.+|++|+++.. .++.-. ..++ .++.|+.|.+.+|. ++-+++-.-..  
T Consensus       247 LrrLNLS~N~-iteL~~~~------~~W~~lEtLNlSrN-QLt~LP-~avc-KL~kL~kLy~n~Nk-L~FeGiPSGIG--  313 (1255)
T KOG0444|consen  247 LRRLNLSGNK-ITELNMTE------GEWENLETLNLSRN-QLTVLP-DAVC-KLTKLTKLYANNNK-LTFEGIPSGIG--  313 (1255)
T ss_pred             hheeccCcCc-eeeeeccH------HHHhhhhhhccccc-hhccch-HHHh-hhHHHHHHHhccCc-ccccCCccchh--
Confidence            8888888776 54432211      12447777777774 433211 1122 24667777776663 55333322221  


Q ss_pred             CCcccCCCCcEEeccCCCCCC--HHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585          318 PDQEKSKQLRRLDLCNCIGLS--VDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH  393 (404)
Q Consensus       318 ~~~~~~~~L~~L~l~~~~~i~--~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~  393 (404)
                          ++.+|+.+...+ +++.  +++   +  ..|++|+.|.++.|++.+. .+   ++ -.+|.++ ++++.|+.--+
T Consensus       314 ----KL~~Levf~aan-N~LElVPEg---l--cRC~kL~kL~L~~NrLiTL-Pe---aI-HlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  314 ----KLIQLEVFHAAN-NKLELVPEG---L--CRCVKLQKLKLDHNRLITL-PE---AI-HLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             ----hhhhhHHHHhhc-cccccCchh---h--hhhHHHHHhcccccceeec-hh---hh-hhcCCcceeeccCCcCccC
Confidence                344566666555 2322  222   1  2467777777777776543 11   22 2346666 66666665444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=8.2e-13  Score=116.05  Aligned_cols=212  Identities=20%  Similarity=0.103  Sum_probs=114.3

Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhh-hcCCCCCceEEecccccCCCCC
Q 015585           14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS-LGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      +.+.+|+.+.|.+..+........++.|++++.|+|+.|-.        -....+.. ..++|+|+.|+++.+...    
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~--------~nw~~v~~i~eqLp~Le~LNls~Nrl~----  185 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLF--------HNWFPVLKIAEQLPSLENLNLSSNRLS----  185 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhH--------HhHHHHHHHHHhcccchhccccccccc----
Confidence            34566677777765555444445556677777777776521        01122222 346777777777664311    


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR  172 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  172 (404)
                        ..++....   ..+++|+.|.++.| +++...+..++..+|+|+.|.+..+..+......  ...++.|++|+|+++.
T Consensus       186 --~~~~s~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  186 --NFISSNTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNN  257 (505)
T ss_pred             --CCccccch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCc
Confidence              11111111   13466777777776 5666677777777777777777766322211111  1133567777777766


Q ss_pred             CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHh------hhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCC
Q 015585          173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRS------ISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGC  246 (404)
Q Consensus       173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~------l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~  246 (404)
                      .+....+..++.++.|+.|+++.| ++.+-....      ....++|++|++..|.+.+.....-.+..++|++|.+..+
T Consensus       258 li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  258 LIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             ccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence            555444445556777777777664 333322211      1356777777777776643322111223556666655443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.28  E-value=4.5e-14  Score=129.29  Aligned_cols=300  Identities=17%  Similarity=0.134  Sum_probs=153.4

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      .++.+|.|+.+++..|.+....++.=.-++.-|+.|+|+.|+         +. +....+.+.+++-.|+++++.     
T Consensus        73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq---------L~-EvP~~LE~AKn~iVLNLS~N~-----  137 (1255)
T KOG0444|consen   73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ---------LR-EVPTNLEYAKNSIVLNLSYNN-----  137 (1255)
T ss_pred             hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh---------hh-hcchhhhhhcCcEEEEcccCc-----
Confidence            345555666665554444333222211235666777777652         21 223345677889999998853     


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC  171 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  171 (404)
                       ...+...    ++.++..|-.|+++++ .+..  +..-++.+.+|++|++++++ +....+..+ ..++.|+.|.+++.
T Consensus       138 -IetIPn~----lfinLtDLLfLDLS~N-rLe~--LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  138 -IETIPNS----LFINLTDLLFLDLSNN-RLEM--LPPQIRRLSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSNT  207 (1255)
T ss_pred             -cccCCch----HHHhhHhHhhhccccc-hhhh--cCHHHHHHhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhcccc
Confidence             2223332    2345567777888873 3322  22225566788888888886 332222222 23445566666664


Q ss_pred             CCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585          172 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD  251 (404)
Q Consensus       172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~  251 (404)
                      ....+.....+-.+.+|..++++. ++++- ....+-.+++|+.|++++|.++.-.+..  ....+|+.|+++++. ++.
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQ-Lt~  282 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSE-NNLPI-VPECLYKLRNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQ-LTV  282 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhccccc-cCCCc-chHHHhhhhhhheeccCcCceeeeeccH--HHHhhhhhhccccch-hcc
Confidence            432222222233567778888876 34432 2344456778888888888776432211  123567777777765 322


Q ss_pred             HHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEec
Q 015585          252 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL  331 (404)
Q Consensus       252 ~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l  331 (404)
                      . ...++     .++.|+.|.+... .++-.|+..=...+.+|+.+...+|. + +..-+.+.       .|+.|+.|.+
T Consensus       283 L-P~avc-----KL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-L-ElVPEglc-------RC~kL~kL~L  346 (1255)
T KOG0444|consen  283 L-PDAVC-----KLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-L-ELVPEGLC-------RCVKLQKLKL  346 (1255)
T ss_pred             c-hHHHh-----hhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-c-ccCchhhh-------hhHHHHHhcc
Confidence            1 11122     4556666665542 44433322211223455555555542 1 11122233       3666666666


Q ss_pred             cCCCCCC-HHHHHhhhcCCCCcccEEecCCcc
Q 015585          332 CNCIGLS-VDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       332 ~~~~~i~-~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      ..+..|| ++++     +.+|.|++|++..|+
T Consensus       347 ~~NrLiTLPeaI-----HlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  347 DHNRLITLPEAI-----HLLPDLKVLDLRENP  373 (1255)
T ss_pred             cccceeechhhh-----hhcCCcceeeccCCc
Confidence            6644444 2222     225566666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=9.4e-11  Score=103.35  Aligned_cols=188  Identities=16%  Similarity=0.123  Sum_probs=101.6

Q ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCC
Q 015585          106 EGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS  185 (404)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  185 (404)
                      ..+.+|+++.+.++ .+...+.....+.|++++.|+++.+-.-....+..++.++|+|+.|+++.+.......-..-..+
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            34556777777663 55555554567777888888888775555666777777788888887776542211110001135


Q ss_pred             CCCCEEeccCCCCCChHHHHhh-hCCCCCCEEEccCCc-cCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCC
Q 015585          186 RNLEVLDLGGCKSIADTCLRSI-SCLRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT  263 (404)
Q Consensus       186 ~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~-l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  263 (404)
                      ++|+.|.++.| +++...+..+ ..+|+|+.|.+..|. +.......  .-+..|+.|+|+++..+.-+.+...     .
T Consensus       197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~-----~  268 (505)
T KOG3207|consen  197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKV-----G  268 (505)
T ss_pred             hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccc-----c
Confidence            66777777776 4555544433 456777777776652 21111000  0134566667766654433322222     2


Q ss_pred             CCCCccEEecCCCCCCCHHHH-----HHHHHhCCCCceEeecCCC
Q 015585          264 ISQSLTTLDLGYMPGISDDGI-----LTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       264 ~~~~L~~L~l~~~~~l~~~~~-----~~l~~~~~~L~~L~l~~~~  303 (404)
                      .+|.|..|.++.+ .+++...     ......+++|+.|++..|+
T Consensus       269 ~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  269 TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence            5566666666654 3333111     1111234666666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.95  E-value=2.2e-09  Score=105.18  Aligned_cols=260  Identities=15%  Similarity=0.099  Sum_probs=153.6

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      ..-..|+++.+.++ ..+..+.   ++|+.|.+.+|..         +.  ++  ...++|++|+++++.      +..+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~L---------t~--LP--~lp~~Lk~LdLs~N~------LtsL  257 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNL---------TS--LP--ALPPELRTLEVSGNQ------LTSL  257 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcC---------CC--CC--CCCCCCcEEEecCCc------cCcc
Confidence            44567788876666 2333332   4788888888632         21  11  124788999997753      2222


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      +        ...++|+.|+++++ .++.  +..   ...+|+.|+++++. ++.  +   ....++|+.|+++++. +..
T Consensus       258 P--------~lp~sL~~L~Ls~N-~L~~--Lp~---lp~~L~~L~Ls~N~-Lt~--L---P~~p~~L~~LdLS~N~-L~~  316 (788)
T PRK15387        258 P--------VLPPGLLELSIFSN-PLTH--LPA---LPSGLCKLWIFGNQ-LTS--L---PVLPPGLQELSVSDNQ-LAS  316 (788)
T ss_pred             c--------CcccccceeeccCC-chhh--hhh---chhhcCEEECcCCc-ccc--c---cccccccceeECCCCc-ccc
Confidence            2        12367888888874 3332  222   23578888888874 321  1   1234678999998864 321


Q ss_pred             HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHH
Q 015585          177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH  256 (404)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~  256 (404)
                        +..  ....|+.|.++++ .++.  ++.  -.++|+.|++++|.++.  +   ....++|+.|.++++. +..     
T Consensus       317 --Lp~--lp~~L~~L~Ls~N-~L~~--LP~--lp~~Lq~LdLS~N~Ls~--L---P~lp~~L~~L~Ls~N~-L~~-----  376 (788)
T PRK15387        317 --LPA--LPSELCKLWAYNN-QLTS--LPT--LPSGLQELSVSDNQLAS--L---PTLPSELYKLWAYNNR-LTS-----  376 (788)
T ss_pred             --CCC--CcccccccccccC-cccc--ccc--cccccceEecCCCccCC--C---CCCCcccceehhhccc-ccc-----
Confidence              111  1246778888774 4432  111  12478999999887764  1   1224578888887765 432     


Q ss_pred             HHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC
Q 015585          257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG  336 (404)
Q Consensus       257 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~  336 (404)
                      +.    ...++|+.|+++++ .++.     +....++|+.|++++|. ++.     +..      ...+|+.|++++ +.
T Consensus       377 LP----~l~~~L~~LdLs~N-~Lt~-----LP~l~s~L~~LdLS~N~-Lss-----IP~------l~~~L~~L~Ls~-Nq  433 (788)
T PRK15387        377 LP----ALPSGLKELIVSGN-RLTS-----LPVLPSELKELMVSGNR-LTS-----LPM------LPSGLLSLSVYR-NQ  433 (788)
T ss_pred             Cc----ccccccceEEecCC-cccC-----CCCcccCCCEEEccCCc-CCC-----CCc------chhhhhhhhhcc-Cc
Confidence            11    12357899999885 4542     11123679999999885 542     222      134678888888 46


Q ss_pred             CCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585          337 LSVDSLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       337 i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                      ++.... .+.  .+++|+.|++++|++++.
T Consensus       434 Lt~LP~-sl~--~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        434 LTRLPE-SLI--HLSSETTVNLEGNPLSER  460 (788)
T ss_pred             ccccCh-HHh--hccCCCeEECCCCCCCch
Confidence            664221 222  378999999999998644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.88  E-value=1.7e-08  Score=98.50  Aligned_cols=160  Identities=17%  Similarity=0.176  Sum_probs=78.7

Q ss_pred             CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585          135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT  214 (404)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  214 (404)
                      .+|++|++++...+...-...+...+|.|++|.+.+-....++.......+|+|..|+++++ +++..  ..++.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHHhccccHH
Confidence            45566666655444444444455555666666666544333332222225566666666653 33322  3344555566


Q ss_pred             EEEccCCccCH-HHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCC
Q 015585          215 ALNLTGADITD-SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG  293 (404)
Q Consensus       215 ~L~l~~~~l~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  293 (404)
                      .|.+.+-.+.. ..+..++. +.+|+.|+++.........+....-..+..+|.|+.||.++ +.++...++.+.++-|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN  276 (699)
T ss_pred             HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence            65555544433 33444442 56666666655443332211111111334566666666665 35555555555555455


Q ss_pred             CceEee
Q 015585          294 IIDLCV  299 (404)
Q Consensus       294 L~~L~l  299 (404)
                      |+.+..
T Consensus       277 L~~i~~  282 (699)
T KOG3665|consen  277 LQQIAA  282 (699)
T ss_pred             Hhhhhh
Confidence            554443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.87  E-value=1.7e-10  Score=110.63  Aligned_cols=222  Identities=19%  Similarity=0.181  Sum_probs=130.5

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCC
Q 015585          109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL  188 (404)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  188 (404)
                      .+|+.++++.+ +..  .+...+..|.+|+.++...+..   ..+..-.....+|+.|.+..+. +.. ....+.+...|
T Consensus       241 ~nl~~~dis~n-~l~--~lp~wi~~~~nle~l~~n~N~l---~~lp~ri~~~~~L~~l~~~~ne-l~y-ip~~le~~~sL  312 (1081)
T KOG0618|consen  241 LNLQYLDISHN-NLS--NLPEWIGACANLEALNANHNRL---VALPLRISRITSLVSLSAAYNE-LEY-IPPFLEGLKSL  312 (1081)
T ss_pred             ccceeeecchh-hhh--cchHHHHhcccceEecccchhH---HhhHHHHhhhhhHHHHHhhhhh-hhh-CCCccccccee
Confidence            36888888773 322  2335567788888888887752   1122212234556666555442 110 00111245667


Q ss_pred             CEEeccCCCCCChHH----------HHhh---------------hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEee
Q 015585          189 EVLDLGGCKSIADTC----------LRSI---------------SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCL  243 (404)
Q Consensus       189 ~~L~l~~~~~~~~~~----------~~~l---------------~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l  243 (404)
                      ++|++.. +.+.+-.          ...+               ...+.|+.|.+.+|.++|..+..+. +.++|+.|.+
T Consensus       313 ~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhL  390 (1081)
T KOG0618|consen  313 RTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHL  390 (1081)
T ss_pred             eeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeee
Confidence            7777765 2332211          0111               0234567788888888888777665 4788999999


Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccC
Q 015585          244 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS  323 (404)
Q Consensus       244 ~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~  323 (404)
                      +++. ++.-.-..+     ..++.|++|.+++. .++.-. ..+ ..|+.|+.|...+|. +..  +-.++.       .
T Consensus       391 syNr-L~~fpas~~-----~kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~tL~ahsN~-l~~--fPe~~~-------l  451 (1081)
T KOG0618|consen  391 SYNR-LNSFPASKL-----RKLEELEELNLSGN-KLTTLP-DTV-ANLGRLHTLRAHSNQ-LLS--FPELAQ-------L  451 (1081)
T ss_pred             cccc-cccCCHHHH-----hchHHhHHHhcccc-hhhhhh-HHH-HhhhhhHHHhhcCCc-eee--chhhhh-------c
Confidence            8885 332211222     25668899999884 555433 222 246788888887764 221  113443       7


Q ss_pred             CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          324 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       324 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      +.|+.+|++. ++++...+....  ..|+|++|+++||.
T Consensus       452 ~qL~~lDlS~-N~L~~~~l~~~~--p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  452 PQLKVLDLSC-NNLSEVTLPEAL--PSPNLKYLDLSGNT  487 (1081)
T ss_pred             CcceEEeccc-chhhhhhhhhhC--CCcccceeeccCCc
Confidence            8899999987 677765554433  24899999999987

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.86  E-value=9.7e-09  Score=100.21  Aligned_cols=217  Identities=18%  Similarity=0.211  Sum_probs=145.6

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCccc----ccccchhhhhhh---cCCCCCceEEecc
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLA----RLDLTSSGLQSL---GSCHHLTGLSLTR   84 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~~~l---~~~~~L~~L~l~~   84 (404)
                      .+...-+++..++.+..........+.+  ..|+++.+.+........    ..++.. .+..+   ..-.+|++|+++|
T Consensus        55 ~~~~~f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~-lL~~~Ln~~sr~nL~~LdI~G  131 (699)
T KOG3665|consen   55 RIIRKFNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIIS-LLKDLLNEESRQNLQHLDISG  131 (699)
T ss_pred             hhhhhheeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHH-HHHHHHhHHHHHhhhhcCccc
Confidence            3455567888888877777666666554  338888887643221000    001100 11111   2457899999977


Q ss_pred             cccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCcc
Q 015585           85 CRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALV  164 (404)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~  164 (404)
                      .        ..+...++..+...+|+|+.|.+.+ .......+.++..++|+|..||++++. ++.-  .. ..++++|+
T Consensus       132 ~--------~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl--~G-IS~LknLq  198 (699)
T KOG3665|consen  132 S--------ELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL--SG-ISRLKNLQ  198 (699)
T ss_pred             c--------chhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc--HH-HhccccHH
Confidence            3        2356666777778899999999998 455555688888889999999999985 3322  12 23778899


Q ss_pred             EEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHH-HHh----hhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585          165 EVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTC-LRS----ISCLRKLTALNLTGADITDSGLSILAQGNLPIM  239 (404)
Q Consensus       165 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~----l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~  239 (404)
                      .|.+.+-...+...+..+..+++|+.||++.-....... +..    -..+|+|+.|+.+++.+....+..+...-|+|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            998888766666777788889999999998743333321 111    125789999999999888888888877667776


Q ss_pred             EEeec
Q 015585          240 NLCLR  244 (404)
Q Consensus       240 ~L~l~  244 (404)
                      .+.+-
T Consensus       279 ~i~~~  283 (699)
T KOG3665|consen  279 QIAAL  283 (699)
T ss_pred             hhhhh
Confidence            65543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.81  E-value=1.2e-07  Score=78.95  Aligned_cols=196  Identities=18%  Similarity=0.179  Sum_probs=97.2

Q ss_pred             cCCCCcEEEcCCCCCCC---HHHHHHHHHhCCCCcEEEecCCCC--CCHHHHH----H-----HHcCCCCccEEEccCCC
Q 015585          107 GCKGLESVRLGGFSKVS---DAGFAAILLSCHSLKKFEVRSASF--LSDLAFH----D-----LTGVPCALVEVRLLWCR  172 (404)
Q Consensus       107 ~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~l~----~-----~~~~~~~L~~L~l~~~~  172 (404)
                      .||+|+..++|++ .++   ...+..++..-..|++|.+++|..  +....+.    .     -.+.-|.|+.+....+.
T Consensus        90 kcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          90 KCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             cCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            4666666666653 221   123344455555666666666521  1111111    1     11234667777665543


Q ss_pred             CCCH--HHHHHhh-CCCCCCEEeccCCCCCChHHHHhh-----hCCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEE
Q 015585          173 LITS--ETVKKLA-SSRNLEVLDLGGCKSIADTCLRSI-----SCLRKLTALNLTGADITDSGLSILAQ---GNLPIMNL  241 (404)
Q Consensus       173 ~~~~--~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L  241 (404)
                      .-+.  ......- ...+|+++.+.. +.+...++..+     ..+.+|+.|++..|.++..+-..++.   .++.|+.|
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            2211  1111111 235777777766 46666554443     35677777777777666555544443   34557777


Q ss_pred             eecCCCCCcHHHHHHHHhh-cCCCCCCccEEecCCCCC----CCHHHHHHH-HHhCCCCceEeecCCCCCC
Q 015585          242 CLRGCKRVTDKGISHLLCV-GGTISQSLTTLDLGYMPG----ISDDGILTI-AAAGIGIIDLCVRSCFYVT  306 (404)
Q Consensus       242 ~l~~~~~l~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~----l~~~~~~~l-~~~~~~L~~L~l~~~~~~~  306 (404)
                      .+.+|- +...+...+..+ .....|+|..|.+.+...    +.+..+..+ -..+|-|..|.+.+|. +.
T Consensus       248 ~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr-~~  316 (388)
T COG5238         248 RLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR-IK  316 (388)
T ss_pred             cccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc-ch
Confidence            777775 444443332210 113457777777665311    111111111 1235667777777774 44

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.81  E-value=1.3e-07  Score=78.80  Aligned_cols=252  Identities=16%  Similarity=0.110  Sum_probs=138.0

Q ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHH---HhCCCCcEEEecCC--CCCCHH------HHHHHHcCCCCccEEEccCCCCC-
Q 015585          107 GCKGLESVRLGGFSKVSDAGFAAIL---LSCHSLKKFEVRSA--SFLSDL------AFHDLTGVPCALVEVRLLWCRLI-  174 (404)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~--~~~~~~------~l~~~~~~~~~L~~L~l~~~~~~-  174 (404)
                      .+..+.++++|++ .++.....++.   ..-.+|+..+++..  ....+.      .+......||.|+.++++.+.+- 
T Consensus        28 ~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            4678889999985 45544444443   33456666666543  111111      12223347888888888876432 


Q ss_pred             --CHHHHHHhhCCCCCCEEeccCCCCCChHHHH-------hh------hCCCCCCEEEccCCccCHHHHHH---HHhcCC
Q 015585          175 --TSETVKKLASSRNLEVLDLGGCKSIADTCLR-------SI------SCLRKLTALNLTGADITDSGLSI---LAQGNL  236 (404)
Q Consensus       175 --~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~l------~~~~~L~~L~l~~~~l~~~~l~~---l~~~~~  236 (404)
                        .......+++...|++|.+++| +++..+-.       .+      +.-|.|+.+..+.|++.+.....   ..+.-.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence              2222334557788888888875 44432211       11      24577888888888665433322   223335


Q ss_pred             CcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCCHHHHHHH
Q 015585          237 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASVEAL  313 (404)
Q Consensus       237 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l  313 (404)
                      +|+.+.+..+. +.++++..+..-....+.+|+.|++... -.+..+-..+.   ...+.|++|.+.+|- ++..+...+
T Consensus       186 ~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v  262 (388)
T COG5238         186 NLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSV  262 (388)
T ss_pred             CceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchh-hccccHHHH
Confidence            77888887765 6666554443111124567788887764 44444433332   234667888887773 554444333


Q ss_pred             HhhCCCcccCCCCcEEeccCCCCCC-----HHHHHhhhcCCCCcccEEecCCccccC
Q 015585          314 ARKQPDQEKSKQLRRLDLCNCIGLS-----VDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       314 ~~~~~~~~~~~~L~~L~l~~~~~i~-----~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      ....... ..|+|..|...+. .+.     ......+.....|-|..|.+.||++..
T Consensus       263 ~~~f~e~-~~p~l~~L~~~Yn-e~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         263 LRRFNEK-FVPNLMPLPGDYN-ERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             HHHhhhh-cCCCccccccchh-hhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            3211100 2567777766552 221     222333333457777777777777754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.80  E-value=3.1e-10  Score=108.93  Aligned_cols=129  Identities=20%  Similarity=0.188  Sum_probs=79.6

Q ss_pred             CCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCE
Q 015585          161 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN  240 (404)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~  240 (404)
                      +.|+.|.+.++. +++..+..+-.+.+||.|+|++ +.+....-..+.+++.|+.|++++|.++.-. ..++ .++.|+.
T Consensus       359 ~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~t  434 (1081)
T KOG0618|consen  359 AALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVA-NLGRLHT  434 (1081)
T ss_pred             HHHHHHHHhcCc-ccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhh-HHHH-hhhhhHH
Confidence            456666666643 6777777777788888888887 4444434445566778888888888665432 2222 4667777


Q ss_pred             EeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585          241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       241 L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      |...++.-. -  +..+.     .++.|+.+|++. ++++...+...... |+|++|++++|.
T Consensus       435 L~ahsN~l~-~--fPe~~-----~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  435 LRAHSNQLL-S--FPELA-----QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             HhhcCCcee-e--chhhh-----hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCc
Confidence            776655421 1  11333     567888888876 36665443332211 688888888876

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=1.4e-08  Score=85.65  Aligned_cols=143  Identities=19%  Similarity=0.131  Sum_probs=95.3

Q ss_pred             hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHH
Q 015585          208 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI  287 (404)
Q Consensus       208 ~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  287 (404)
                      ..+..|+++++++|.++...-.  .+-.|.++.|+++++. +...+  .+.     .+++|+.|++++. .++.  +..+
T Consensus       281 dTWq~LtelDLS~N~I~~iDES--vKL~Pkir~L~lS~N~-i~~v~--nLa-----~L~~L~~LDLS~N-~Ls~--~~Gw  347 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDES--VKLAPKLRRLILSQNR-IRTVQ--NLA-----ELPQLQLLDLSGN-LLAE--CVGW  347 (490)
T ss_pred             chHhhhhhccccccchhhhhhh--hhhccceeEEeccccc-eeeeh--hhh-----hcccceEeecccc-hhHh--hhhh
Confidence            3577899999999977632211  2246899999999887 43322  233     5679999999985 4433  3333


Q ss_pred             HHhCCCCceEeecCCCCCCH-HHHHHHHhhCCCcccCCCCcEEeccCCCCCCH-HHHHhhhcCCCCcccEEecCCccccC
Q 015585          288 AAAGIGIIDLCVRSCFYVTD-ASVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       288 ~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      ...+-+++.|.+.+|. +.+ .++.          ++.+|..|++++ ++|.. ..+..++  .+|+|+.+.+.+|++..
T Consensus       348 h~KLGNIKtL~La~N~-iE~LSGL~----------KLYSLvnLDl~~-N~Ie~ldeV~~IG--~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  348 HLKLGNIKTLKLAQNK-IETLSGLR----------KLYSLVNLDLSS-NQIEELDEVNHIG--NLPCLETLRLTGNPLAG  413 (490)
T ss_pred             HhhhcCEeeeehhhhh-HhhhhhhH----------hhhhheeccccc-cchhhHHHhcccc--cccHHHHHhhcCCCccc
Confidence            3456899999999885 322 2222          255699999999 45543 4445554  49999999999999976


Q ss_pred             CChHHHHHHHhc
Q 015585          366 KGNPVITEIHNE  377 (404)
Q Consensus       366 ~~~~~~~~~~~~  377 (404)
                      ..+..-.-++..
T Consensus       414 ~vdYRTKVLa~F  425 (490)
T KOG1259|consen  414 SVDYRTKVLARF  425 (490)
T ss_pred             cchHHHHHHHHH
Confidence            655444444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.72  E-value=2.5e-08  Score=97.89  Aligned_cols=243  Identities=19%  Similarity=0.168  Sum_probs=141.0

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      ++|+.|++..|.++..  +   ...++|++|++++|..         +.  ++.  ..++|+.|+++++.         +
T Consensus       222 ~~L~~L~L~~N~Lt~L--P---~lp~~Lk~LdLs~N~L---------ts--LP~--lp~sL~~L~Ls~N~---------L  274 (788)
T PRK15387        222 AHITTLVIPDNNLTSL--P---ALPPELRTLEVSGNQL---------TS--LPV--LPPGLLELSIFSNP---------L  274 (788)
T ss_pred             cCCCEEEccCCcCCCC--C---CCCCCCcEEEecCCcc---------Cc--ccC--cccccceeeccCCc---------h
Confidence            4799999998887742  1   2368999999999732         21  111  23688899987642         2


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      .  .+.   ....+|+.|+++++ .++..     ....++|+.|+++++. ++.  +.   .....|+.|.+.++. +. 
T Consensus       275 ~--~Lp---~lp~~L~~L~Ls~N-~Lt~L-----P~~p~~L~~LdLS~N~-L~~--Lp---~lp~~L~~L~Ls~N~-L~-  335 (788)
T PRK15387        275 T--HLP---ALPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQ-LAS--LP---ALPSELCKLWAYNNQ-LT-  335 (788)
T ss_pred             h--hhh---hchhhcCEEECcCC-ccccc-----cccccccceeECCCCc-ccc--CC---CCcccccccccccCc-cc-
Confidence            1  111   22357888888884 44421     1224789999998884 321  11   123467778777754 22 


Q ss_pred             HHHHHhhCC-CCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHH
Q 015585          177 ETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS  255 (404)
Q Consensus       177 ~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~  255 (404)
                          .++.+ .+|++|++++ +.+..  ++.  ..++|+.|++.+|.++.  +.   ....+|+.|+++++. +..    
T Consensus       336 ----~LP~lp~~Lq~LdLS~-N~Ls~--LP~--lp~~L~~L~Ls~N~L~~--LP---~l~~~L~~LdLs~N~-Lt~----  396 (788)
T PRK15387        336 ----SLPTLPSGLQELSVSD-NQLAS--LPT--LPSELYKLWAYNNRLTS--LP---ALPSGLKELIVSGNR-LTS----  396 (788)
T ss_pred             ----cccccccccceEecCC-CccCC--CCC--CCcccceehhhcccccc--Cc---ccccccceEEecCCc-ccC----
Confidence                12222 4788888887 35543  111  13567778888776653  22   223568888887775 432    


Q ss_pred             HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585          256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI  335 (404)
Q Consensus       256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~  335 (404)
                       +.    ...++|+.|+++++ .++..  ..   ...+|+.|++++|. ++.. -..+.       .+++|+.|++++ +
T Consensus       397 -LP----~l~s~L~~LdLS~N-~LssI--P~---l~~~L~~L~Ls~Nq-Lt~L-P~sl~-------~L~~L~~LdLs~-N  455 (788)
T PRK15387        397 -LP----VLPSELKELMVSGN-RLTSL--PM---LPSGLLSLSVYRNQ-LTRL-PESLI-------HLSSETTVNLEG-N  455 (788)
T ss_pred             -CC----CcccCCCEEEccCC-cCCCC--Cc---chhhhhhhhhccCc-cccc-ChHHh-------hccCCCeEECCC-C
Confidence             11    12357888888875 44421  11   12457777787774 4421 11222       367788888887 4


Q ss_pred             CCCHHHHHhh
Q 015585          336 GLSVDSLRWV  345 (404)
Q Consensus       336 ~i~~~~~~~l  345 (404)
                      .++......+
T Consensus       456 ~Ls~~~~~~L  465 (788)
T PRK15387        456 PLSERTLQAL  465 (788)
T ss_pred             CCCchHHHHH
Confidence            5665444433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=1.8e-08  Score=84.98  Aligned_cols=232  Identities=18%  Similarity=0.099  Sum_probs=147.6

Q ss_pred             CcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCC
Q 015585          111 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLE  189 (404)
Q Consensus       111 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~  189 (404)
                      ++-+.+.+|.-.+...+..+...+..++.+++.++..-.+..+.++..++|.|+.|+++.+. +.. .+..++ ...+|+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s-~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSS-DIKSLPLPLKNLR  124 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCC-ccccCcccccceE
Confidence            44556666543344456667778899999999999756678888999999999999998765 322 344453 678999


Q ss_pred             EEeccCCCCCChHHHHhh-hCCCCCCEEEccCCcc-----CHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCC
Q 015585          190 VLDLGGCKSIADTCLRSI-SCLRKLTALNLTGADI-----TDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT  263 (404)
Q Consensus       190 ~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l-----~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  263 (404)
                      +|.+.+ ..++......+ ..+|.++.|+++.|.+     .+.....   .-+.+..|....|...-....-.+.    +
T Consensus       125 ~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~----r  196 (418)
T KOG2982|consen  125 VLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLS----R  196 (418)
T ss_pred             EEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHH----h
Confidence            999988 46766655543 4688889998888732     2222222   2344556666555422222222333    5


Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCC---HH
Q 015585          264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLS---VD  340 (404)
Q Consensus       264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~---~~  340 (404)
                      .+|++..+-+..|+--+.... .=.+.+|.+.-|.++.+..-+.+++.++..       +++|..|.+.+.+-..   ..
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~e-k~se~~p~~~~LnL~~~~idswasvD~Ln~-------f~~l~dlRv~~~Pl~d~l~~~  268 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSE-KGSEPFPSLSCLNLGANNIDSWASVDALNG-------FPQLVDLRVSENPLSDPLRGG  268 (418)
T ss_pred             hcccchheeeecCcccchhhc-ccCCCCCcchhhhhcccccccHHHHHHHcC-------CchhheeeccCCcccccccCC
Confidence            678888888877642222221 112345677777887775344567777774       8999999998855432   22


Q ss_pred             HHHhhhcCCCCcccEEecCC
Q 015585          341 SLRWVKRPSFRGLHWLGIGQ  360 (404)
Q Consensus       341 ~~~~l~~~~~~~L~~L~l~~  360 (404)
                      ..+.+-...+++++.|+=+.
T Consensus       269 err~llIaRL~~v~vLNGsk  288 (418)
T KOG2982|consen  269 ERRFLLIARLTKVQVLNGSK  288 (418)
T ss_pred             cceEEEEeeccceEEecCcc
Confidence            22233345688888888663

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.61  E-value=1.8e-09  Score=94.29  Aligned_cols=91  Identities=15%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             HHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCC
Q 015585          288 AAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKG  367 (404)
Q Consensus       288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~  367 (404)
                      .+.+++|+.|++++|. ++...-.++.       +...++.|.+.. +++....-..+.  .+..|+.|++.+|+++...
T Consensus       270 f~~L~~L~~lnlsnN~-i~~i~~~aFe-------~~a~l~eL~L~~-N~l~~v~~~~f~--~ls~L~tL~L~~N~it~~~  338 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNK-ITRIEDGAFE-------GAAELQELYLTR-NKLEFVSSGMFQ--GLSGLKTLSLYDNQITTVA  338 (498)
T ss_pred             HhhcccceEeccCCCc-cchhhhhhhc-------chhhhhhhhcCc-chHHHHHHHhhh--ccccceeeeecCCeeEEEe
Confidence            4567899999998884 6655444444       356688888887 466554444443  4778999999999987553


Q ss_pred             hHHHHHHHhcCCccE-EEecccccccc
Q 015585          368 NPVITEIHNERPWLT-FCLDGCEIGCH  393 (404)
Q Consensus       368 ~~~~~~~~~~~~~l~-l~~~~~~~~~~  393 (404)
                      ..+++.    .-++. +.+-+|+|.|+
T Consensus       339 ~~aF~~----~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  339 PGAFQT----LFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             cccccc----cceeeeeehccCcccCc
Confidence            333333    34444 88888888888

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=1.3e-07  Score=79.84  Aligned_cols=206  Identities=16%  Similarity=0.104  Sum_probs=135.1

Q ss_pred             CCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCC-HHHHHHHHHhCCCCcEEEecCCCCCCHHHHH
Q 015585           76 HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVS-DAGFAAILLSCHSLKKFEVRSASFLSDLAFH  154 (404)
Q Consensus        76 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~  154 (404)
                      .++.|.+.+|..        -+......+...+..++++++.++ .++ ...+..+++++|.|+.|+++.+..-+  .+.
T Consensus        46 a~ellvln~~~i--------d~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s--~I~  114 (418)
T KOG2982|consen   46 ALELLVLNGSII--------DNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSS--DIK  114 (418)
T ss_pred             chhhheecCCCC--------CcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCC--ccc
Confidence            445566655531        123345556677889999999995 554 45688899999999999999986322  222


Q ss_pred             HHHcCCCCccEEEccCCCCCCHHHHHH-hhCCCCCCEEeccCCCCC-----ChHHHHhhhCCCCCCEEEccCCcc-CHHH
Q 015585          155 DLTGVPCALVEVRLLWCRLITSETVKK-LASSRNLEVLDLGGCKSI-----ADTCLRSISCLRKLTALNLTGADI-TDSG  227 (404)
Q Consensus       155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~-----~~~~~~~l~~~~~L~~L~l~~~~l-~~~~  227 (404)
                      .+.....+|+.|-+.|.. ++...... +..+|.+++|.++. ++.     .+.....  -.+.+++|++..|.. ....
T Consensus       115 ~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~  190 (418)
T KOG2982|consen  115 SLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSD-NSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLN  190 (418)
T ss_pred             cCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhcc-chhhhhccccccccc--cchhhhhhhcCCcHHHHHHH
Confidence            222355789999998854 55444433 34678888888876 222     1211111  123566666666633 2334


Q ss_pred             HHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCH-HHHHHHHHhCCCCceEeecCCC
Q 015585          228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD-DGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       228 l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      ...+.+.+|++..+-+..|+ +....-+.-+    ..+|.+-.|.++.. ++.+ +.+..+ +.++.|..|.+.+++
T Consensus       191 ~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~s----e~~p~~~~LnL~~~-~idswasvD~L-n~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  191 KNKLSRIFPNVNSVFVCEGP-LKTESSEKGS----EPFPSLSCLNLGAN-NIDSWASVDAL-NGFPQLVDLRVSENP  260 (418)
T ss_pred             HHhHHhhcccchheeeecCc-ccchhhcccC----CCCCcchhhhhccc-ccccHHHHHHH-cCCchhheeeccCCc
Confidence            55667788999999998887 5554433333    56788888888874 6766 445555 468999999999998

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=2.7e-07  Score=73.69  Aligned_cols=105  Identities=19%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             ccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc
Q 015585          268 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR  347 (404)
Q Consensus       268 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~  347 (404)
                      ++.++-+++ .|...|+..+. .++.++.|.+.+|.++.|.++..++.      ..++|++|+|++|+.||+.++..+. 
T Consensus       103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~------~~~~L~~L~lsgC~rIT~~GL~~L~-  173 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG------LAPSLQDLDLSGCPRITDGGLACLL-  173 (221)
T ss_pred             EEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc------cccchheeeccCCCeechhHHHHHH-
Confidence            344444443 44444444442 34555555555555555555555554      3455555555555555555555554 


Q ss_pred             CCCCcccEEecCCccccCCChHHHHHHHhcCCccE
Q 015585          348 PSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT  382 (404)
Q Consensus       348 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~  382 (404)
                       .+++|+.|.+.+-+-..........+.+.+|+..
T Consensus       174 -~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~  207 (221)
T KOG3864|consen  174 -KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCD  207 (221)
T ss_pred             -HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccc
Confidence             2555555555543332222222333344555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.31  E-value=2e-07  Score=74.87  Aligned_cols=14  Identities=36%  Similarity=0.491  Sum_probs=3.6

Q ss_pred             CCCCCEEEccCCcc
Q 015585          210 LRKLTALNLTGADI  223 (404)
Q Consensus       210 ~~~L~~L~l~~~~l  223 (404)
                      +|+|+.|.+++|.+
T Consensus        87 lp~L~~L~L~~N~I  100 (175)
T PF14580_consen   87 LPNLQELYLSNNKI  100 (175)
T ss_dssp             -TT--EEE-TTS--
T ss_pred             CCcCCEEECcCCcC
Confidence            34444444444433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.29  E-value=1.6e-08  Score=88.73  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=22.7

Q ss_pred             CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      +.+|.+|++.++ .+.... ..++  .+++|++|.++||++.
T Consensus       504 m~nL~tLDL~nN-dlq~IP-p~Lg--nmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  504 MRNLTTLDLQNN-DLQQIP-PILG--NMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhcceeccCCC-chhhCC-hhhc--cccceeEEEecCCccC
Confidence            566888888773 332211 1122  3778888888888764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=7.7e-07  Score=71.11  Aligned_cols=83  Identities=27%  Similarity=0.347  Sum_probs=37.4

Q ss_pred             CCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCC
Q 015585          213 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI  292 (404)
Q Consensus       213 L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  292 (404)
                      ++.++-+++.+...++..+- .++.++.|.+.+|..+.+.+++.+.    ...++|+.|++++|+.|++.++..+. .++
T Consensus       103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~-~lk  176 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLL-KLK  176 (221)
T ss_pred             EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHH-Hhh
Confidence            34444444444444444433 2444444445444444444444444    33444444444444444444444443 234


Q ss_pred             CCceEeecC
Q 015585          293 GIIDLCVRS  301 (404)
Q Consensus       293 ~L~~L~l~~  301 (404)
                      +|+.|.+.+
T Consensus       177 nLr~L~l~~  185 (221)
T KOG3864|consen  177 NLRRLHLYD  185 (221)
T ss_pred             hhHHHHhcC
Confidence            444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.24  E-value=1.3e-07  Score=75.87  Aligned_cols=37  Identities=19%  Similarity=0.013  Sum_probs=11.9

Q ss_pred             CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecC
Q 015585          323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIG  359 (404)
Q Consensus       323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~  359 (404)
                      +|+|+.|++.+++-......+.+....+|+|+.||-.
T Consensus       112 l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  112 LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            4555555555433222222222222235555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.23  E-value=1.2e-07  Score=83.12  Aligned_cols=40  Identities=23%  Similarity=0.179  Sum_probs=24.0

Q ss_pred             ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecC
Q 015585           11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED   51 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~   51 (404)
                      .+|+.+++||+|||+.|.|+...+..+.. +++|.+|-+.+
T Consensus        85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~G-L~~l~~Lvlyg  124 (498)
T KOG4237|consen   85 GAFKTLHRLRRLDLSKNNISFIAPDAFKG-LASLLSLVLYG  124 (498)
T ss_pred             hhccchhhhceecccccchhhcChHhhhh-hHhhhHHHhhc
Confidence            34666667777777766666555555543 55555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.21  E-value=4.6e-07  Score=79.77  Aligned_cols=110  Identities=18%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             hhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHH
Q 015585          206 SISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL  285 (404)
Q Consensus       206 ~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~  285 (404)
                      .+..+++|..|++++|-+.+-... +. .+..|+.|+++.+..-.-..+-+       ....++.+-.+. +.+......
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln~LP~e-~~-~lv~Lq~LnlS~NrFr~lP~~~y-------~lq~lEtllas~-nqi~~vd~~  499 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLNDLPEE-MG-SLVRLQTLNLSFNRFRMLPECLY-------ELQTLETLLASN-NQIGSVDPS  499 (565)
T ss_pred             HHHhhhcceeeecccchhhhcchh-hh-hhhhhheecccccccccchHHHh-------hHHHHHHHHhcc-ccccccChH
Confidence            345677888888887644321111 11 23457888887664211111111       111233333332 233221111


Q ss_pred             HHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585          286 TIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI  335 (404)
Q Consensus       286 ~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~  335 (404)
                      .+ ..+.+|..|++.+|.      ++.++..+.   +|.+|++|++.+++
T Consensus       500 ~l-~nm~nL~tLDL~nNd------lq~IPp~Lg---nmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  500 GL-KNMRNLTTLDLQNND------LQQIPPILG---NMTNLRHLELDGNP  539 (565)
T ss_pred             Hh-hhhhhcceeccCCCc------hhhCChhhc---cccceeEEEecCCc
Confidence            11 235789999998885      444444444   79999999999954

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.20  E-value=9.1e-06  Score=80.58  Aligned_cols=252  Identities=13%  Similarity=0.117  Sum_probs=113.5

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      .+.+.|++++..++. .+..+   .++|+.|++++|...      .++.    .  ..++|+.|+++++.      +..+
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~Lt------sLP~----~--l~~nL~~L~Ls~N~------LtsL  235 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI---PEQITTLILDNNELK------SLPE----N--LQGNIKTLYANSNQ------LTSI  235 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCC------cCCh----h--hccCCCEEECCCCc------cccC
Confidence            345667776555442 12222   246777777775321      1111    1  12467777776642      2222


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      ...    +   .++|+.|+++++ .+...  ..-+  ..+|+.|+++++. ++.  ++.  ...++|+.|++++|. +..
T Consensus       236 P~~----l---~~~L~~L~Ls~N-~L~~L--P~~l--~s~L~~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~N~-Lt~  297 (754)
T PRK15370        236 PAT----L---PDTIQEMELSIN-RITEL--PERL--PSALQSLDLFHNK-ISC--LPE--NLPEELRYLSVYDNS-IRT  297 (754)
T ss_pred             Chh----h---hccccEEECcCC-ccCcC--ChhH--hCCCCEEECcCCc-cCc--ccc--ccCCCCcEEECCCCc-ccc
Confidence            211    1   135777777764 33211  1101  1467777777653 221  111  112467777777653 221


Q ss_pred             HHHHHhh--CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHH
Q 015585          177 ETVKKLA--SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI  254 (404)
Q Consensus       177 ~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~  254 (404)
                           +.  -.++|+.|+++++ .+...  .. ...++|+.|++++|.++.-  ..  ..+++|+.|++++|. +...  
T Consensus       298 -----LP~~lp~sL~~L~Ls~N-~Lt~L--P~-~l~~sL~~L~Ls~N~Lt~L--P~--~l~~sL~~L~Ls~N~-L~~L--  361 (754)
T PRK15370        298 -----LPAHLPSGITHLNVQSN-SLTAL--PE-TLPPGLKTLEAGENALTSL--PA--SLPPELQVLDVSKNQ-ITVL--  361 (754)
T ss_pred             -----CcccchhhHHHHHhcCC-ccccC--Cc-cccccceeccccCCccccC--Ch--hhcCcccEEECCCCC-CCcC--
Confidence                 11  0134566666653 33311  10 1124666666666654421  10  012566777776664 3311  


Q ss_pred             HHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCH--HHHHHHHhhCCCcccCCCCcEEecc
Q 015585          255 SHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD--ASVEALARKQPDQEKSKQLRRLDLC  332 (404)
Q Consensus       255 ~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~~~~~~~L~~L~l~  332 (404)
                      ...      ..+.|++|+++++ .++.... .+.   +.|+.|++++|. ++.  ..+..+..      .++++..|++.
T Consensus       362 P~~------lp~~L~~LdLs~N-~Lt~LP~-~l~---~sL~~LdLs~N~-L~~LP~sl~~~~~------~~~~l~~L~L~  423 (754)
T PRK15370        362 PET------LPPTITTLDVSRN-ALTNLPE-NLP---AALQIMQASRNN-LVRLPESLPHFRG------EGPQPTRIIVE  423 (754)
T ss_pred             Chh------hcCCcCEEECCCC-cCCCCCH-hHH---HHHHHHhhccCC-cccCchhHHHHhh------cCCCccEEEee
Confidence            000      1246677777665 3332110 111   246666666663 331  11222222      34666667666


Q ss_pred             CCCCCCHHHHH
Q 015585          333 NCIGLSVDSLR  343 (404)
Q Consensus       333 ~~~~i~~~~~~  343 (404)
                      + +.++...+.
T Consensus       424 ~-Npls~~tl~  433 (754)
T PRK15370        424 Y-NPFSERTIQ  433 (754)
T ss_pred             C-CCccHHHHH
Confidence            6 345543333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.20  E-value=2.3e-06  Score=84.67  Aligned_cols=122  Identities=17%  Similarity=0.095  Sum_probs=55.0

Q ss_pred             CCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhC
Q 015585          212 KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG  291 (404)
Q Consensus       212 ~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  291 (404)
                      +|+.|++++|.++..  ..  ...++|+.|.+++|. ++..  ..      ..+++|+.|+++++ .++... ..+   .
T Consensus       305 sL~~L~Ls~N~Lt~L--P~--~l~~sL~~L~Ls~N~-Lt~L--P~------~l~~sL~~L~Ls~N-~L~~LP-~~l---p  366 (754)
T PRK15370        305 GITHLNVQSNSLTAL--PE--TLPPGLKTLEAGENA-LTSL--PA------SLPPELQVLDVSKN-QITVLP-ETL---P  366 (754)
T ss_pred             hHHHHHhcCCccccC--Cc--cccccceeccccCCc-cccC--Ch------hhcCcccEEECCCC-CCCcCC-hhh---c
Confidence            455555555544321  00  012456666666654 3221  10      11246677777664 343211 011   2


Q ss_pred             CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCH--HHHHhhhcCCCCcccEEecCCcccc
Q 015585          292 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV--DSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      ++|+.|++++|. ++... ..+.         +.|+.|++++| .++.  ..+..+. ..+|.+..|++.+|++.
T Consensus       367 ~~L~~LdLs~N~-Lt~LP-~~l~---------~sL~~LdLs~N-~L~~LP~sl~~~~-~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        367 PTITTLDVSRNA-LTNLP-ENLP---------AALQIMQASRN-NLVRLPESLPHFR-GEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCcCEEECCCCc-CCCCC-HhHH---------HHHHHHhhccC-CcccCchhHHHHh-hcCCCccEEEeeCCCcc
Confidence            566777776664 33110 0111         23666666663 3332  1111221 12466777777777764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.19  E-value=2.5e-07  Score=78.30  Aligned_cols=235  Identities=15%  Similarity=0.129  Sum_probs=133.9

Q ss_pred             HHHHHHHhCCCCcEEEecCCCCCC------HHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccCCCC
Q 015585          126 GFAAILLSCHSLKKFEVRSASFLS------DLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKS  198 (404)
Q Consensus       126 ~~~~l~~~~~~L~~L~l~~~~~~~------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~  198 (404)
                      .+..++..|.+|+.|.+++....-      ..-+..-...+.+|+.+.++.|+.   +.+..+. .-|.|+.+.+.+. .
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~---~~i~~~~~~kptl~t~~v~~s-~  248 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST---ENIVDIELLKPTLQTICVHNT-T  248 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch---hheeceeecCchhheeeeecc-c
Confidence            466677778888888888774321      111222223456788888877652   1222222 2367777776552 2


Q ss_pred             CChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCC
Q 015585          199 IADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPG  278 (404)
Q Consensus       199 ~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~  278 (404)
                      +.+  .+.+-+...+.......-..........+..+..|+.++++++. ++.  +..-.    +..|.++.|++++. .
T Consensus       249 ~~~--~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~--iDESv----KL~Pkir~L~lS~N-~  318 (490)
T KOG1259|consen  249 IQD--VPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQ--IDESV----KLAPKLRRLILSQN-R  318 (490)
T ss_pred             ccc--cccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhh--hhhhh----hhccceeEEecccc-c
Confidence            211  11111112221111111111111111112245778999999875 433  22223    45689999999995 5


Q ss_pred             CCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEec
Q 015585          279 ISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGI  358 (404)
Q Consensus       279 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l  358 (404)
                      +...+  .+ +.+++|..|++++|. ++..  ...-.      ++-+.++|.+++ +.+.+  +.-+.  .+-+|..|++
T Consensus       319 i~~v~--nL-a~L~~L~~LDLS~N~-Ls~~--~Gwh~------KLGNIKtL~La~-N~iE~--LSGL~--KLYSLvnLDl  381 (490)
T KOG1259|consen  319 IRTVQ--NL-AELPQLQLLDLSGNL-LAEC--VGWHL------KLGNIKTLKLAQ-NKIET--LSGLR--KLYSLVNLDL  381 (490)
T ss_pred             eeeeh--hh-hhcccceEeecccch-hHhh--hhhHh------hhcCEeeeehhh-hhHhh--hhhhH--hhhhheeccc
Confidence            54422  12 346899999999985 4432  22222      366899999988 44443  22222  2568999999


Q ss_pred             CCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585          359 GQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       359 ~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      ++|++.  ..+.+..+ ...|=++ +.+.+|++.-..
T Consensus       382 ~~N~Ie--~ldeV~~I-G~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  382 SSNQIE--ELDEVNHI-GNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             cccchh--hHHHhccc-ccccHHHHHhhcCCCccccc
Confidence            999985  45566666 6788888 899999887553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=98.12  E-value=1.7e-06  Score=81.22  Aligned_cols=347  Identities=22%  Similarity=0.281  Sum_probs=181.4

Q ss_pred             CcEEeccCCCCChHHHHHHHhh---CCCccEEeecCCCCCCcccccccchhhhhhhc----CC-CCCceEEecccccCCC
Q 015585           19 LRSLSLVLDVITDELLITITAS---LPFLVELDLEDRPNTEPLARLDLTSSGLQSLG----SC-HHLTGLSLTRCRHNHQ   90 (404)
Q Consensus        19 L~~L~L~~~~~~~~~~~~i~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~   90 (404)
                      +..|.|.++.+.+.....+.+.   .+.|+.|++++|         .+.+.+...+.    .. +.|+.|++..|..   
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n---------~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l---  156 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN---------NLGDEGARLLCEGLRLPQCLLQTLELVSCSL---  156 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC---------CCccHhHHHHHhhcccchHHHHHHHhhcccc---
Confidence            5666676666666555555443   457777777775         34555555542    22 4566666665531   


Q ss_pred             CCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHH---HH----hCCCCcEEEecCCCCCCHHHHH---HHHcCC
Q 015585           91 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAI---LL----SCHSLKKFEVRSASFLSDLAFH---DLTGVP  160 (404)
Q Consensus        91 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l---~~----~~~~L~~L~l~~~~~~~~~~l~---~~~~~~  160 (404)
                         .......+.........++.++++.+... ..+...+   .+    ...++++|++.++. ++.....   ......
T Consensus       157 ---~~~g~~~l~~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~  231 (478)
T KOG4308|consen  157 ---TSEGAAPLAAVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASG  231 (478)
T ss_pred             ---cccchHHHHHHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhcc
Confidence               11222223333333566777777764332 2222222   22    23466777777774 3333322   223333


Q ss_pred             CC-ccEEEccCCCCCCHHHHHHhh----CC-CCCCEEeccCCCCCChHHHHhh----hCCCCCCEEEccCCccCHHHHHH
Q 015585          161 CA-LVEVRLLWCRLITSETVKKLA----SS-RNLEVLDLGGCKSIADTCLRSI----SCLRKLTALNLTGADITDSGLSI  230 (404)
Q Consensus       161 ~~-L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~l~~  230 (404)
                      +. +.++++..+. +.+.++..+.    .. +.++++++..| .+++.....+    ..++.++.+.+..+.+.+.+...
T Consensus       232 ~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~  309 (478)
T KOG4308|consen  232 ESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVEL  309 (478)
T ss_pred             chhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHH
Confidence            44 5556666543 5655555544    23 45677777774 5555444433    35667777777777776655444


Q ss_pred             HHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCc-cEEecCCCCCCCHHHHHHHHH----hCCCCceEeecCC
Q 015585          231 LAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSL-TTLDLGYMPGISDDGILTIAA----AGIGIIDLCVRSC  302 (404)
Q Consensus       231 l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~  302 (404)
                      +.+   ....+.++.+.++......+...+...  .....+ ....++. ....+.+...+..    .-+.+..+++..+
T Consensus       310 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  386 (478)
T KOG4308|consen  310 LLEALERKTPLLHLVLGGTGKGTRGGTSVLAEA--DAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNSQ  386 (478)
T ss_pred             HHHHhhhcccchhhhccccCccchhHHHHHHHH--HHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhcc
Confidence            433   234455555554443332222211100  001111 2222222 2333333322221    1234556666665


Q ss_pred             CCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh---cCCCCcccEEecCCccccCCChHHHHHHHhcCC
Q 015585          303 FYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK---RPSFRGLHWLGIGQTRLASKGNPVITEIHNERP  379 (404)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  379 (404)
                      . +.+.+...++....   .++.++.++++.+ ...+++...+.   .... .++.+.++.+..+....+....-....+
T Consensus       387 ~-~~~~~~~~l~~~~~---~~~~l~~~~l~~n-~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~  460 (478)
T KOG4308|consen  387 V-IEGRGALRLAAQLA---SNEKLEILDLSLN-SLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALALNP  460 (478)
T ss_pred             c-cccHHHHHhhhhhh---hcchhhhhhhhcC-ccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHhcCC
Confidence            4 44444444444333   5889999999874 33333333322   1224 8999999999998877777776666777


Q ss_pred             ccE-EEecccccccc
Q 015585          380 WLT-FCLDGCEIGCH  393 (404)
Q Consensus       380 ~l~-l~~~~~~~~~~  393 (404)
                      .+. +..++|.+++.
T Consensus       461 ~~~~~~~~~~~~~~~  475 (478)
T KOG4308|consen  461 GILAIRLRGNVIGRA  475 (478)
T ss_pred             CcceeecccCccccc
Confidence            777 77777766654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=98.02  E-value=1e-06  Score=82.63  Aligned_cols=222  Identities=24%  Similarity=0.277  Sum_probs=122.6

Q ss_pred             ccEEEccCCCCCCHHHHHHhh----CCCCCCEEeccCCCCCChHHHHhhh----CC-CCCCEEEccCCccCHHHHHHHHh
Q 015585          163 LVEVRLLWCRLITSETVKKLA----SSRNLEVLDLGGCKSIADTCLRSIS----CL-RKLTALNLTGADITDSGLSILAQ  233 (404)
Q Consensus       163 L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~l~~~~l~~l~~  233 (404)
                      +..+.+.+|. +.+.+...++    ..++|+.|++++ +++++.+...+.    .. ..+++|.+..|.+++.+...++.
T Consensus        89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA  166 (478)
T ss_pred             HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence            4444555443 3333333333    456666666666 355555554442    11 34555666666666655554443


Q ss_pred             ---cCCCcCEEeecCCCCCcHHHHHHHHhhcCC---CCCCccEEecCCCCCCCHHHHHHHHH---hCCC-CceEeecCCC
Q 015585          234 ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGT---ISQSLTTLDLGYMPGISDDGILTIAA---AGIG-IIDLCVRSCF  303 (404)
Q Consensus       234 ---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~-L~~L~l~~~~  303 (404)
                         ....++.+++..|. +...+...+..+...   ...++++|++.+| .++......+..   +.+. +.+|++..| 
T Consensus       167 ~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n-  243 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN-  243 (478)
T ss_pred             HHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-
Confidence               24556666666665 333333333211111   3456788888877 555554444332   2344 556777766 


Q ss_pred             CCCHHHHHHHHhhCCCcccC-CCCcEEeccCCCCCCHHHHHhhh--cCCCCcccEEecCCccccCC-ChHHHHHHHhcCC
Q 015585          304 YVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASK-GNPVITEIHNERP  379 (404)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~--~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~  379 (404)
                      .+.|.+++.+...+.   .. +.++.+++..| .+++.+...+.  ...++.++.+.+++|.+..- ....++.+.+..|
T Consensus       244 ~l~d~g~~~L~~~l~---~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~  319 (478)
T KOG4308|consen  244 KLGDVGVEKLLPCLS---VLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTP  319 (478)
T ss_pred             CcchHHHHHHHHHhc---ccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhccc
Confidence            477777777777655   44 56788888884 66666665554  23477888888888887432 2223334455556


Q ss_pred             ccEEEecccccccc
Q 015585          380 WLTFCLDGCEIGCH  393 (404)
Q Consensus       380 ~l~l~~~~~~~~~~  393 (404)
                      .+.+-+.++..++.
T Consensus       320 ~~~~~l~~~~~~~~  333 (478)
T KOG4308|consen  320 LLHLVLGGTGKGTR  333 (478)
T ss_pred             chhhhccccCccch
Confidence            55555555555444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.95  E-value=1.7e-06  Score=87.01  Aligned_cols=233  Identities=21%  Similarity=0.216  Sum_probs=118.2

Q ss_pred             cCCCCCcEEeccCCC--CChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           14 YSSFNLRSLSLVLDV--ITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        14 ~~~~~L~~L~L~~~~--~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      ..+++|+.|-+..+.  +. .....+...+|.|+.||+++|..        + ......++.+-+||+|++++..     
T Consensus       542 ~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~--------l-~~LP~~I~~Li~LryL~L~~t~-----  606 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSS--------L-SKLPSSIGELVHLRYLDLSDTG-----  606 (889)
T ss_pred             CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCc--------c-CcCChHHhhhhhhhcccccCCC-----
Confidence            445678888887654  22 22223334588999999998632        2 1223457788888898887742     


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC  171 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  171 (404)
                          +.  .++.-...+..|.+|++........  +..+...+++|++|.+.....-.+.....-...+.+|+.+.+...
T Consensus       607 ----I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  607 ----IS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ----cc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence                32  1222224456788888876432221  234455578888888877641122222222245566666655432


Q ss_pred             CCCCHHHHHHhhCCCCCC----EEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHH----Hh-cCCCcCEEe
Q 015585          172 RLITSETVKKLASSRNLE----VLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSIL----AQ-GNLPIMNLC  242 (404)
Q Consensus       172 ~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l----~~-~~~~L~~L~  242 (404)
                      .   ...+..+-....|.    .+.+.+|  ........+..+.+|+.|.+..+...+......    .. .++++..+.
T Consensus       679 s---~~~~e~l~~~~~L~~~~~~l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~  753 (889)
T KOG4658|consen  679 S---VLLLEDLLGMTRLRSLLQSLSIEGC--SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVS  753 (889)
T ss_pred             h---hHhHhhhhhhHHHHHHhHhhhhccc--ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHH
Confidence            2   11222222222222    2222221  111223344567788888888776643222100    00 133444444


Q ss_pred             ecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCH
Q 015585          243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD  281 (404)
Q Consensus       243 l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~  281 (404)
                      +.+|....+.....+       .|+|+.|.+..|..+.+
T Consensus       754 ~~~~~~~r~l~~~~f-------~~~L~~l~l~~~~~~e~  785 (889)
T KOG4658|consen  754 ILNCHMLRDLTWLLF-------APHLTSLSLVSCRLLED  785 (889)
T ss_pred             hhccccccccchhhc-------cCcccEEEEeccccccc
Confidence            445543333222222       36788888877755544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.87  E-value=8.7e-07  Score=83.75  Aligned_cols=239  Identities=21%  Similarity=0.178  Sum_probs=128.4

Q ss_pred             HHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHH
Q 015585          126 GFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLR  205 (404)
Q Consensus       126 ~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  205 (404)
                      .++.+...+++++.|.+-..+.-....-..+ ..+..|+.|.+.+|+--.-.++..+.  ..|+.|.-..   ..+..-.
T Consensus        75 qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~i-fpF~sLr~LElrg~~L~~~~GL~~lr--~qLe~LIC~~---Sl~Al~~  148 (1096)
T KOG1859|consen   75 QLQRILDFLQKTKVLKLLPSPARDPTEPISI-FPFRSLRVLELRGCDLSTAKGLQELR--HQLEKLICHN---SLDALRH  148 (1096)
T ss_pred             HHHHHHHHHhhheeeeecccCCCCCCCCcee-ccccceeeEEecCcchhhhhhhHHHH--Hhhhhhhhhc---cHHHHHH
Confidence            3455566677777777766532221111112 25678999999998744434444443  2334432211   1111111


Q ss_pred             hh-------h---CCCCCCEEEccCCccC--HHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEec
Q 015585          206 SI-------S---CLRKLTALNLTGADIT--DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDL  273 (404)
Q Consensus       206 ~l-------~---~~~~L~~L~l~~~~l~--~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l  273 (404)
                      .+       .   .+-.|...+.+.|++.  |..+.    .++.+++|+++++. +++..  .+     ..++.|++||+
T Consensus       149 v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk-~~~v~--~L-----r~l~~LkhLDl  216 (1096)
T KOG1859|consen  149 VFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNK-FTKVD--NL-----RRLPKLKHLDL  216 (1096)
T ss_pred             HHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhh-hhhhH--HH-----Hhccccccccc
Confidence            11       1   2334555555556543  22333    35778889998887 54433  22     36788999999


Q ss_pred             CCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCH-HHHHhhhcCCCCc
Q 015585          274 GYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRG  352 (404)
Q Consensus       274 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~  352 (404)
                      ++. .+....-... ..|. |..|.+++|. ++.  +..+.       ++.+|+.||+++ +-+.. ..+..+.  .+..
T Consensus       217 syN-~L~~vp~l~~-~gc~-L~~L~lrnN~-l~t--L~gie-------~LksL~~LDlsy-Nll~~hseL~pLw--sLs~  280 (1096)
T KOG1859|consen  217 SYN-CLRHVPQLSM-VGCK-LQLLNLRNNA-LTT--LRGIE-------NLKSLYGLDLSY-NLLSEHSELEPLW--SLSS  280 (1096)
T ss_pred             ccc-hhccccccch-hhhh-heeeeecccH-HHh--hhhHH-------hhhhhhccchhH-hhhhcchhhhHHH--HHHH
Confidence            874 3332111111 1243 8888898885 332  33344       366788899887 34432 2233333  2668


Q ss_pred             ccEEecCCccccCC---ChHHHHHHHhcCCccEEEeccccccccCCccc
Q 015585          353 LHWLGIGQTRLASK---GNPVITEIHNERPWLTFCLDGCEIGCHDGWQF  398 (404)
Q Consensus       353 L~~L~l~~~~l~~~---~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~  398 (404)
                      |+.|.+.||++.-.   -....+++..+---..+-++|=.++..+.|..
T Consensus       281 L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~efwk~  329 (1096)
T KOG1859|consen  281 LIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGREFWKR  329 (1096)
T ss_pred             HHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccchhhhhh
Confidence            89999999888422   11223333322122237777778888877753

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.75  E-value=1.3e-05  Score=80.94  Aligned_cols=235  Identities=16%  Similarity=0.070  Sum_probs=117.4

Q ss_pred             CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585           41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS  120 (404)
Q Consensus        41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~  120 (404)
                      ++.|++|-+.++..       .+.......+..+|.|+.||+++|.          ....++.....+-+|++|++++ +
T Consensus       544 ~~~L~tLll~~n~~-------~l~~is~~ff~~m~~LrVLDLs~~~----------~l~~LP~~I~~Li~LryL~L~~-t  605 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSD-------WLLEISGEFFRSLPLLRVLDLSGNS----------SLSKLPSSIGELVHLRYLDLSD-T  605 (889)
T ss_pred             CCccceEEEeecch-------hhhhcCHHHHhhCcceEEEECCCCC----------ccCcCChHHhhhhhhhcccccC-C
Confidence            66788888877510       0222233345678889999998753          1122222234566888888888 4


Q ss_pred             CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC-CCCHHHHHHhhCCCCCCEEeccCCCCC
Q 015585          121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR-LITSETVKKLASSRNLEVLDLGGCKSI  199 (404)
Q Consensus       121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~  199 (404)
                      .+.  .++.-+..++.|.+|++..+.....  +..+...+++|+.|.+.... ......+..+..+.+|+.+....+.  
T Consensus       606 ~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s--  679 (889)
T KOG4658|consen  606 GIS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS--  679 (889)
T ss_pred             Ccc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch--
Confidence            554  2333356667888888887753221  13344457788888886543 2223334444455556655554321  


Q ss_pred             ChHHHHhhhCCCCCC----EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCC-CCCccEEecC
Q 015585          200 ADTCLRSISCLRKLT----ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI-SQSLTTLDLG  274 (404)
Q Consensus       200 ~~~~~~~l~~~~~L~----~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~-~~~L~~L~l~  274 (404)
                       ......+...+.|.    .+.+..+..  .........+.+|+.|.+.+|. ..+..+.......... ++++..+.+.
T Consensus       680 -~~~~e~l~~~~~L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~-~~e~~~~~~~~~~~~~~f~~l~~~~~~  755 (889)
T KOG4658|consen  680 -VLLLEDLLGMTRLRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCG-ISEIVIEWEESLIVLLCFPNLSKVSIL  755 (889)
T ss_pred             -hHhHhhhhhhHHHHHHhHhhhhccccc--ceeecccccccCcceEEEEcCC-CchhhcccccccchhhhHHHHHHHHhh
Confidence             11122222222222    121111110  0011111246778888888776 3222111110000011 3345555555


Q ss_pred             CCCCCCHHHHHHHHHhCCCCceEeecCCCCCC
Q 015585          275 YMPGISDDGILTIAAAGIGIIDLCVRSCFYVT  306 (404)
Q Consensus       275 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~  306 (404)
                      .|....+..+..   ..|+|+.|.+..|+.+.
T Consensus       756 ~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e  784 (889)
T KOG4658|consen  756 NCHMLRDLTWLL---FAPHLTSLSLVSCRLLE  784 (889)
T ss_pred             ccccccccchhh---ccCcccEEEEecccccc
Confidence            554444333322   24788888888886444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.70  E-value=2.2e-07  Score=72.18  Aligned_cols=60  Identities=22%  Similarity=0.217  Sum_probs=34.2

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecc
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTR   84 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~   84 (404)
                      +....++++|.|+.+.++ ..++.|+. +.+|+.|++.+++         ++ +....++.++.|+.|+++.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnq---------ie-~lp~~issl~klr~lnvgm   88 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQ---------IE-ELPTSISSLPKLRILNVGM   88 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccch---------hh-hcChhhhhchhhhheecch
Confidence            344456666777766665 23445554 6677777777652         21 1223456667777777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.41  E-value=4.1e-05  Score=50.14  Aligned_cols=34  Identities=35%  Similarity=0.393  Sum_probs=14.6

Q ss_pred             CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCC
Q 015585           18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDR   52 (404)
Q Consensus        18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~   52 (404)
                      +|++|+++++.+..... .....+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N   35 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNN   35 (61)
T ss_dssp             TESEEEETSSTESEECT-TTTTTGTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCC
Confidence            45555555444442211 11123455555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.30  E-value=6.5e-05  Score=49.20  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=15.7

Q ss_pred             CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC
Q 015585          184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA  221 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  221 (404)
                      .+++|++|++++ +.+.......+..+++|++|++++|
T Consensus        23 ~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   23 NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            344444444443 2333333333344444444444443

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.23  E-value=4e-05  Score=72.98  Aligned_cols=35  Identities=23%  Similarity=0.115  Sum_probs=20.2

Q ss_pred             CCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          210 LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       210 ~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      ++.++.|++++|++++..   ..+.|++|++|+|+.+.
T Consensus       186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~  220 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNC  220 (1096)
T ss_pred             HHHhhhhccchhhhhhhH---HHHhcccccccccccch
Confidence            455666666666665432   22346666666666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.15  E-value=4.9e-06  Score=64.80  Aligned_cols=39  Identities=28%  Similarity=0.219  Sum_probs=19.0

Q ss_pred             cCCCCcEEeccCCCCCC-HHHHHhhhcCCCCcccEEecCCccccC
Q 015585          322 KSKQLRRLDLCNCIGLS-VDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       322 ~~~~L~~L~l~~~~~i~-~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      .+.+|+.|.+..+.-++ +..+.     .+..|++|.+.||+++.
T Consensus       148 ~lt~lqil~lrdndll~lpkeig-----~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  148 KLTNLQILSLRDNDLLSLPKEIG-----DLTRLRELHIQGNRLTV  187 (264)
T ss_pred             hhcceeEEeeccCchhhCcHHHH-----HHHHHHHHhcccceeee
Confidence            35556666665533222 11111     14456666666666543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.96  E-value=0.0011  Score=34.73  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=11.7

Q ss_pred             CCCceEeecCCCCCCHHHHHHHH
Q 015585          292 IGIIDLCVRSCFYVTDASVEALA  314 (404)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~~~~l~  314 (404)
                      ++|++|++++|+.++|.++..++
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHHh
Confidence            44555555555555555554444

>PLN03150 hypothetical protein; Provisional

Probab=96.79  E-value=0.0033  Score=62.07  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             ccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCC
Q 015585           44 LVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVS  123 (404)
Q Consensus        44 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~  123 (404)
                      ++.|+|+++         .+.......+..+++|+.|+++++.         +... +......+++|+.|+++++ .+.
T Consensus       420 v~~L~L~~n---------~L~g~ip~~i~~L~~L~~L~Ls~N~---------l~g~-iP~~~~~l~~L~~LdLs~N-~ls  479 (623)
T PLN03150        420 IDGLGLDNQ---------GLRGFIPNDISKLRHLQSINLSGNS---------IRGN-IPPSLGSITSLEVLDLSYN-SFN  479 (623)
T ss_pred             EEEEECCCC---------CccccCCHHHhCCCCCCEEECCCCc---------ccCc-CChHHhCCCCCCEEECCCC-CCC
Confidence            556666664         2222223345566667777776542         2111 1111245666777777664 332


Q ss_pred             HHHHHHHHHhCCCCcEEEecCCC
Q 015585          124 DAGFAAILLSCHSLKKFEVRSAS  146 (404)
Q Consensus       124 ~~~~~~l~~~~~~L~~L~l~~~~  146 (404)
                      .. +...+..+++|+.|+++++.
T Consensus       480 g~-iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        480 GS-IPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             CC-CchHHhcCCCCCEEECcCCc
Confidence            21 12224456677777777664

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.72  E-value=0.0019  Score=33.79  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=21.5

Q ss_pred             CCCCcEEeccCCCCCCHHHHHhhh
Q 015585          323 SKQLRRLDLCNCIGLSVDSLRWVK  346 (404)
Q Consensus       323 ~~~L~~L~l~~~~~i~~~~~~~l~  346 (404)
                      |++|+.|++++|.+||+.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            678999999999999999988775

>PLN03150 hypothetical protein; Provisional

Probab=96.64  E-value=0.0041  Score=61.37  Aligned_cols=107  Identities=19%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             CCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCC
Q 015585          188 LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS  267 (404)
Q Consensus       188 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~  267 (404)
                      ++.|+|+++ .+.......+..+++|+.|++++|.++......+ ..+++|+.|++++|. +.......+.     .+++
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~-lsg~iP~~l~-----~L~~  491 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNS-FNGSIPESLG-----QLTS  491 (623)
T ss_pred             EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCC-CCCCCchHHh-----cCCC
Confidence            667777763 5554445566777888888888877654322233 247788888888775 4332222333     5678


Q ss_pred             ccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585          268 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       268 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      |+.|+++++ .++......+.....++..+++.+|+
T Consensus       492 L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        492 LRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCEEECcCC-cccccCChHHhhccccCceEEecCCc
Confidence            888888775 44332222222223456677777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.56  E-value=0.00026  Score=59.37  Aligned_cols=65  Identities=22%  Similarity=0.285  Sum_probs=38.8

Q ss_pred             CCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCH-HHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585          263 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD-ASVEALARKQPDQEKSKQLRRLDLCNCI  335 (404)
Q Consensus       263 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~~~~~~~L~~L~l~~~~  335 (404)
                      +.+|+|++|.++..+.-...++..+...+|+|++|++++|. +.+ ..+..+.       ..++|..|++.+|.
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~-------~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLK-------ELENLKSLDLFNCS  127 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhh-------hhcchhhhhcccCC
Confidence            45667777777664333345566666667777777777774 442 2233333       25667777777763

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.11  E-value=0.009  Score=54.64  Aligned_cols=55  Identities=9%  Similarity=0.230  Sum_probs=24.9

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585          108 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR  172 (404)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  172 (404)
                      +++++.|++++| .++...     ..-.+|+.|.+.+|..++.  +...  ..++|+.|.+.+|.
T Consensus        51 ~~~l~~L~Is~c-~L~sLP-----~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs  105 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLP-----VLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCP  105 (426)
T ss_pred             hcCCCEEEeCCC-CCcccC-----CCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCcc
Confidence            466666666665 322211     1113566666666543211  1110  12356666666553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.96  E-value=0.0064  Score=56.77  Aligned_cols=190  Identities=22%  Similarity=0.277  Sum_probs=104.3

Q ss_pred             EEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhh-hcCC-CCCceEEecccccCCCCCccccCh
Q 015585           21 SLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS-LGSC-HHLTGLSLTRCRHNHQGTFKRVND   98 (404)
Q Consensus        21 ~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-l~~~-~~L~~L~l~~~~~~~~~~~~~~~~   98 (404)
                      .+++..+.+.. ....+.. .+.++.+++.++..         +  .+.. .... ++|+.|++++..         +..
T Consensus        97 ~l~~~~~~~~~-~~~~~~~-~~~l~~L~l~~n~i---------~--~i~~~~~~~~~nL~~L~l~~N~---------i~~  154 (394)
T COG4886          97 SLDLNLNRLRS-NISELLE-LTNLTSLDLDNNNI---------T--DIPPLIGLLKSNLKELDLSDNK---------IES  154 (394)
T ss_pred             eeecccccccc-Cchhhhc-ccceeEEecCCccc---------c--cCccccccchhhcccccccccc---------hhh
Confidence            45666544421 1222222 46788888887532         1  1122 2344 378888887642         221


Q ss_pred             hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH
Q 015585           99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET  178 (404)
Q Consensus        99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~  178 (404)
                      .  ..-...+++|+.|+++.+ .+.+..  ......++|+.|+++++.. .  .+.........|+++.++++..+.  .
T Consensus       155 l--~~~~~~l~~L~~L~l~~N-~l~~l~--~~~~~~~~L~~L~ls~N~i-~--~l~~~~~~~~~L~~l~~~~N~~~~--~  224 (394)
T COG4886         155 L--PSPLRNLPNLKNLDLSFN-DLSDLP--KLLSNLSNLNNLDLSGNKI-S--DLPPEIELLSALEELDLSNNSIIE--L  224 (394)
T ss_pred             h--hhhhhccccccccccCCc-hhhhhh--hhhhhhhhhhheeccCCcc-c--cCchhhhhhhhhhhhhhcCCccee--c
Confidence            1  011256788888888884 444332  2222557888888888852 1  112211234457888887753121  2


Q ss_pred             HHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          179 VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       179 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      +..+..+.++..+.+.. +.+... ...+..++++++|++.++.+++...   .....+++.|++++..
T Consensus       225 ~~~~~~~~~l~~l~l~~-n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~  288 (394)
T COG4886         225 LSSLSNLKNLSGLELSN-NKLEDL-PESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNS  288 (394)
T ss_pred             chhhhhcccccccccCC-ceeeec-cchhccccccceecccccccccccc---ccccCccCEEeccCcc
Confidence            23344556666666544 222221 3444567778888888887765433   2246778888887765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.80  E-value=0.012  Score=35.34  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=21.0

Q ss_pred             CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          324 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       324 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      ++|++|+++++ .+++... .+.  .+++|+.|++++|.++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~-~l~--~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPP-ELS--NLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGG-HGT--TCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCC-CCcccCc-hHh--CCCCCCEEEecCCCCC
Confidence            35677777773 5554322 132  4777777777777764

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.75  E-value=0.02  Score=34.35  Aligned_cols=36  Identities=42%  Similarity=0.514  Sum_probs=16.0

Q ss_pred             CCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585          187 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT  224 (404)
Q Consensus       187 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  224 (404)
                      +|++|+++++ .+.+-. ..++.+++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N-~i~~l~-~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLP-PELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSS-S-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCC-CCcccC-chHhCCCCCCEEEecCCCCC
Confidence            4555555552 343211 12455555555555555444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.74  E-value=0.01  Score=48.07  Aligned_cols=64  Identities=14%  Similarity=0.047  Sum_probs=27.0

Q ss_pred             CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          292 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      |+|+.|.+.+|....-..+..++.       ||.|+.|.+-+++.-.....+......+|+|+.|++.+..
T Consensus        88 p~l~~L~LtnNsi~~l~dl~pLa~-------~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   88 PNLKTLILTNNSIQELGDLDPLAS-------CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cccceEEecCcchhhhhhcchhcc-------CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            555555555543111222333332       5555555555532222222222222235556666555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.63  E-value=0.0026  Score=53.48  Aligned_cols=11  Identities=45%  Similarity=0.431  Sum_probs=4.3

Q ss_pred             CCCCCEEeccC
Q 015585          185 SRNLEVLDLGG  195 (404)
Q Consensus       185 ~~~L~~L~l~~  195 (404)
                      +.+|..|++..
T Consensus       115 l~nL~~Ldl~n  125 (260)
T KOG2739|consen  115 LENLKSLDLFN  125 (260)
T ss_pred             hcchhhhhccc
Confidence            33344444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.56  E-value=0.0032  Score=53.50  Aligned_cols=114  Identities=19%  Similarity=0.190  Sum_probs=66.4

Q ss_pred             CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585           16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      +.+++.|++-|+.+++..   +-..++.|+.|.|+-|.+           ..+..+..|++|+.|.|..+         .
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkI-----------ssL~pl~rCtrLkElYLRkN---------~   74 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKI-----------SSLAPLQRCTRLKELYLRKN---------C   74 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccc-----------ccchhHHHHHHHHHHHHHhc---------c
Confidence            456666777777777543   334578888888887532           23455667788888877653         2


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHH---HHHHHHHhCCCCcEEEecCCCCCCHHHHHH
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDA---GFAAILLSCHSLKKFEVRSASFLSDLAFHD  155 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~  155 (404)
                      +.+..-.....++|+|+.|.|..++-....   --..++..+|+|+.|+=-   -++...+..
T Consensus        75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv---~VteeEle~  134 (388)
T KOG2123|consen   75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV---PVTEEELEE  134 (388)
T ss_pred             cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc---cccHHHHHH
Confidence            433333333467788888888664333222   123446667888776532   244444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.02  E-value=0.026  Score=45.82  Aligned_cols=86  Identities=28%  Similarity=0.217  Sum_probs=36.2

Q ss_pred             CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHH-HHHHHHhcCCCcCEEeecCCCCCcHH-HHH-HHHhh
Q 015585          184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLSILAQGNLPIMNLCLRGCKRVTDK-GIS-HLLCV  260 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~-~l~~~  260 (404)
                      +++.|..|.+.. +.++.-...--.-.|+|..|.+.+|++..- .+..++ .||.|++|.+-+++ +... ... .+.  
T Consensus        62 ~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Np-v~~k~~YR~yvl--  136 (233)
T KOG1644|consen   62 HLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNP-VEHKKNYRLYVL--  136 (233)
T ss_pred             CccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCc-hhcccCceeEEE--
Confidence            444555555544 333332211112244555555555544322 122222 35555555555554 2211 111 111  


Q ss_pred             cCCCCCCccEEecCCC
Q 015585          261 GGTISQSLTTLDLGYM  276 (404)
Q Consensus       261 ~~~~~~~L~~L~l~~~  276 (404)
                        ..+|+|+.||+...
T Consensus       137 --~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  137 --YKLPSLRTLDFQKV  150 (233)
T ss_pred             --EecCcceEeehhhh
Confidence              34566666666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.76  E-value=0.0072  Score=51.43  Aligned_cols=80  Identities=18%  Similarity=0.148  Sum_probs=43.2

Q ss_pred             CccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEE
Q 015585          162 ALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNL  241 (404)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L  241 (404)
                      +.+.|+.-||. +.|  +....+++.|++|.|+- +.++  .+..+..|++|++|.|..|.|.+..-....+.+|+|+.|
T Consensus        20 ~vkKLNcwg~~-L~D--Isic~kMp~lEVLsLSv-NkIs--sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCG-LDD--ISICEKMPLLEVLSLSV-NKIS--SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCC-ccH--HHHHHhcccceeEEeec-cccc--cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45556666654 333  22233566667776665 3333  244455666667776666666553333333356666666


Q ss_pred             eecCCC
Q 015585          242 CLRGCK  247 (404)
Q Consensus       242 ~l~~~~  247 (404)
                      =|..++
T Consensus        94 WL~ENP   99 (388)
T KOG2123|consen   94 WLDENP   99 (388)
T ss_pred             hhccCC
Confidence            665555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.64  E-value=0.034  Score=28.24  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=12.3

Q ss_pred             CCCceEeecCCCCCCHHHHHHHH
Q 015585          292 IGIIDLCVRSCFYVTDASVEALA  314 (404)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~~~~l~  314 (404)
                      ++|+.|+|++|. +++.++..++
T Consensus         2 ~~L~~L~l~~n~-i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQ-ITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred             CCCCEEEccCCc-CCHHHHHHhC
Confidence            566666666664 6666666554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.59  E-value=0.0049  Score=57.88  Aligned_cols=14  Identities=36%  Similarity=0.282  Sum_probs=7.7

Q ss_pred             hcCCCCCceEEecc
Q 015585           71 LGSCHHLTGLSLTR   84 (404)
Q Consensus        71 l~~~~~L~~L~l~~   84 (404)
                      +..+++|++|++++
T Consensus       114 l~~~~~L~~L~ls~  127 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSF  127 (414)
T ss_pred             hhhhhcchheeccc
Confidence            34455555665555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.39  E-value=0.067  Score=49.92  Aligned_cols=175  Identities=22%  Similarity=0.200  Sum_probs=103.5

Q ss_pred             hhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcC-CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCC
Q 015585           70 SLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGC-KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFL  148 (404)
Q Consensus        70 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  148 (404)
                      .+...+.++.|++.+..      ...+..     ..... ++|+.|++++. .+...  ..-+..+++|+.|+++++. +
T Consensus       111 ~~~~~~~l~~L~l~~n~------i~~i~~-----~~~~~~~nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N~-l  175 (394)
T COG4886         111 ELLELTNLTSLDLDNNN------ITDIPP-----LIGLLKSNLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFND-L  175 (394)
T ss_pred             hhhcccceeEEecCCcc------cccCcc-----ccccchhhccccccccc-chhhh--hhhhhccccccccccCCch-h
Confidence            34455778888886632      112221     11233 38999999884 44332  1225677999999999886 2


Q ss_pred             CHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHh-hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHH
Q 015585          149 SDLAFHDLTGVPCALVEVRLLWCRLITSETVKKL-ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG  227 (404)
Q Consensus       149 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~  227 (404)
                      .  .+.......+.|+.|.++++. +.+  +... .....|+++.+.+. . ....+..+....++..+.+.++.+.+. 
T Consensus       176 ~--~l~~~~~~~~~L~~L~ls~N~-i~~--l~~~~~~~~~L~~l~~~~N-~-~~~~~~~~~~~~~l~~l~l~~n~~~~~-  247 (394)
T COG4886         176 S--DLPKLLSNLSNLNNLDLSGNK-ISD--LPPEIELLSALEELDLSNN-S-IIELLSSLSNLKNLSGLELSNNKLEDL-  247 (394)
T ss_pred             h--hhhhhhhhhhhhhheeccCCc-ccc--CchhhhhhhhhhhhhhcCC-c-ceecchhhhhcccccccccCCceeeec-
Confidence            2  222222256788999998864 222  1122 23455888888773 2 122334445667777777777765541 


Q ss_pred             HHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC
Q 015585          228 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM  276 (404)
Q Consensus       228 l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~  276 (404)
                       ......+++++.|+++++. +.....  +     .....++.|++++.
T Consensus       248 -~~~~~~l~~l~~L~~s~n~-i~~i~~--~-----~~~~~l~~L~~s~n  287 (394)
T COG4886         248 -PESIGNLSNLETLDLSNNQ-ISSISS--L-----GSLTNLRELDLSGN  287 (394)
T ss_pred             -cchhccccccceecccccc-cccccc--c-----cccCccCEEeccCc
Confidence             2223356779999998776 444322  2     35678999999874

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.28  E-value=0.044  Score=50.30  Aligned_cols=145  Identities=17%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHH
Q 015585          177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS  255 (404)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~  255 (404)
                      +....+..+.++++|++++| .+...  +.  -.++|+.|.+.+| .++.  +...  ..++|++|.+++|..+.     
T Consensus        43 ~a~~r~~~~~~l~~L~Is~c-~L~sL--P~--LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~-----  108 (426)
T PRK15386         43 EITPQIEEARASGRLYIKDC-DIESL--PV--LPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEIS-----  108 (426)
T ss_pred             HHHHHHHHhcCCCEEEeCCC-CCccc--CC--CCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCccccc-----
Confidence            34444556899999999987 43322  11  2346999999875 3211  1100  13579999999886442     


Q ss_pred             HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585          256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI  335 (404)
Q Consensus       256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~  335 (404)
                      .       ..++|+.|++... ....  +..+   .++|+.|.+.++.......   +...+     -++|+.|.+++|.
T Consensus       109 s-------LP~sLe~L~L~~n-~~~~--L~~L---PssLk~L~I~~~n~~~~~~---lp~~L-----PsSLk~L~Is~c~  167 (426)
T PRK15386        109 G-------LPESVRSLEIKGS-ATDS--IKNV---PNGLTSLSINSYNPENQAR---IDNLI-----SPSLKTLSLTGCS  167 (426)
T ss_pred             c-------cccccceEEeCCC-CCcc--cccC---cchHhheeccccccccccc---ccccc-----CCcccEEEecCCC
Confidence            1       2357888888652 2221  2222   2578888875432111111   11111     2689999999987


Q ss_pred             CCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          336 GLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       336 ~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      .+.      +...--.+|+.|.++.+.
T Consensus       168 ~i~------LP~~LP~SLk~L~ls~n~  188 (426)
T PRK15386        168 NII------LPEKLPESLQSITLHIEQ  188 (426)
T ss_pred             ccc------CcccccccCcEEEecccc
Confidence            542      110112489999988763

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.28  E-value=0.045  Score=27.77  Aligned_cols=21  Identities=43%  Similarity=0.624  Sum_probs=9.9

Q ss_pred             CCCCEEEccCCccCHHHHHHH
Q 015585          211 RKLTALNLTGADITDSGLSIL  231 (404)
Q Consensus       211 ~~L~~L~l~~~~l~~~~l~~l  231 (404)
                      ++|++|++++|.++++++..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            445555555555555555444

...

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=93.42  E-value=0.15  Score=47.92  Aligned_cols=98  Identities=19%  Similarity=0.169  Sum_probs=56.9

Q ss_pred             HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585          287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                      .....|.+..+.+++|....-+.+..+++      ..|+|+.|+|+++ ........++.+-....|++|.+.||++.+.
T Consensus       213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq------~apklk~L~LS~N-~~~~~~~~el~K~k~l~Leel~l~GNPlc~t  285 (585)
T KOG3763|consen  213 IEENFPEILSLSLSNNRLYHLDALSSLSQ------IAPKLKTLDLSHN-HSKISSESELDKLKGLPLEELVLEGNPLCTT  285 (585)
T ss_pred             hhcCCcceeeeecccchhhchhhhhHHHH------hcchhheeecccc-hhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence            33345777777777776444455566666      6777777777773 2111222233333366778888888877543


Q ss_pred             ---ChHHHHHHHhcCCccEEEeccccccc
Q 015585          367 ---GNPVITEIHNERPWLTFCLDGCEIGC  392 (404)
Q Consensus       367 ---~~~~~~~~~~~~~~l~l~~~~~~~~~  392 (404)
                         ..+.+.++.+.+|++. .++|.+..-
T Consensus       286 f~~~s~yv~~i~~~FPKL~-~LDG~ev~~  313 (585)
T KOG3763|consen  286 FSDRSEYVSAIRELFPKLL-RLDGVEVQP  313 (585)
T ss_pred             hhhhHHHHHHHHHhcchhe-eecCcccCc
Confidence               3445556677777765 223444444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.63  E-value=0.015  Score=54.70  Aligned_cols=17  Identities=12%  Similarity=0.012  Sum_probs=10.6

Q ss_pred             CCCcccEEecCCccccC
Q 015585          349 SFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       349 ~~~~L~~L~l~~~~l~~  365 (404)
                      ..++++.+.+.+++...
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  303 AAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccccccCcccc
Confidence            35567777777666543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=91.11  E-value=0.36  Score=25.53  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=14.8

Q ss_pred             CCCCEEEccCCccCHHHHHHHHh
Q 015585          211 RKLTALNLTGADITDSGLSILAQ  233 (404)
Q Consensus       211 ~~L~~L~l~~~~l~~~~l~~l~~  233 (404)
                      ++|+.|+|++|.+.+.+...+++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHH
Confidence            45666677666666666666554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=91.01  E-value=0.36  Score=25.52  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=15.3

Q ss_pred             CCCceEeecCCCCCCHHHHHHHHh
Q 015585          292 IGIIDLCVRSCFYVTDASVEALAR  315 (404)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~~~~l~~  315 (404)
                      ++|++|+|++|. +++++...+++
T Consensus         2 ~~L~~LdL~~N~-i~~~G~~~L~~   24 (28)
T smart00368        2 PSLRELDLSNNK-LGDEGARALAE   24 (28)
T ss_pred             CccCEEECCCCC-CCHHHHHHHHH
Confidence            456777777664 67777766665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.18  E-value=0.064  Score=40.83  Aligned_cols=34  Identities=21%  Similarity=0.082  Sum_probs=14.9

Q ss_pred             CCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccC
Q 015585          160 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG  195 (404)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  195 (404)
                      ++.++.|++.++. +.+...+ ++..+.|+.|+++.
T Consensus        76 f~t~t~lNl~~ne-isdvPeE-~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   76 FPTATTLNLANNE-ISDVPEE-LAAMPALRSLNLRF  109 (177)
T ss_pred             cchhhhhhcchhh-hhhchHH-HhhhHHhhhccccc
Confidence            3444555554432 3322222 44455555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.18  E-value=0.4  Score=21.95  Aligned_cols=14  Identities=29%  Similarity=0.439  Sum_probs=6.8

Q ss_pred             CcccEEecCCcccc
Q 015585          351 RGLHWLGIGQTRLA  364 (404)
Q Consensus       351 ~~L~~L~l~~~~l~  364 (404)
                      ++|+.|++++|.++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35666666666653

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.06  E-value=0.31  Score=37.24  Aligned_cols=38  Identities=21%  Similarity=0.300  Sum_probs=21.3

Q ss_pred             CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585          184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI  223 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  223 (404)
                      .++.++.|++.+ +.+++.. ..++.+|.|+.|+++.|.+
T Consensus        75 kf~t~t~lNl~~-neisdvP-eE~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   75 KFPTATTLNLAN-NEISDVP-EELAAMPALRSLNLRFNPL  112 (177)
T ss_pred             ccchhhhhhcch-hhhhhch-HHHhhhHHhhhcccccCcc
Confidence            455666666665 3444332 2356666666666666654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.37  E-value=2.1  Score=40.62  Aligned_cols=66  Identities=23%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             HhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCC-CCCH-HHHHHHHHhCCCCceEeecCCC
Q 015585          232 AQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMP-GISD-DGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       232 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~l~~-~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      ....|.+..+.++++....-+.+..+.    ...|+|..|+|++.. .+.. ..+..+  ....|++|.+.+|+
T Consensus       214 ~~n~p~i~sl~lsnNrL~~Ld~~ssls----q~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNP  281 (585)
T KOG3763|consen  214 EENFPEILSLSLSNNRLYHLDALSSLS----QIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNP  281 (585)
T ss_pred             hcCCcceeeeecccchhhchhhhhHHH----Hhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCc
Confidence            334555555555555533334444444    345566666665531 1111 112222  12456666666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	404
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-29
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-24
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-21
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-26
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-26
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-09
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	6e-06
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	8e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  115 bits (289), Expect = 3e-29
 Identities = 42/249 (16%), Positives = 85/249 (34%), Gaps = 21/249 (8%)

Query: 11  SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS 70
           + ++S F ++ + L   VI    L  I +    L  L LE          L L+   + +
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG---------LRLSDPIVNT 137

Query: 71  LGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAI 130
           L    +L  L+L+ C           ++  +  L   C  L+ + L      ++      
Sbjct: 138 LAKNSNLVRLNLSGCSG--------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189

Query: 131 LLS-CHSLKKFEVRS-ASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 188
           +     ++ +  +      L       L      LV + L    ++ ++  ++      L
Sbjct: 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249

Query: 189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKR 248
           + L L  C  I    L  +  +  L  L + G  + D  L +L +  LP + +       
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEA-LPHLQINCSHFTT 307

Query: 249 VTDKGISHL 257
           +    I + 
Sbjct: 308 IARPTIGNK 316

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  101 bits (252), Expect = 3e-24
 Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 15/232 (6%)

Query: 130 ILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLE 189
           +     S      R      D    +    P  +  + L    +  S     L+    L+
Sbjct: 63  VTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121

Query: 190 VLDLGGCKSIADTCLRSISCLRKLTALNLTG-ADITDSGLSILAQGNLPIMNLCLRGCKR 248
            L L G + ++D  + +++    L  LNL+G +  ++  L  L      +  L L  C  
Sbjct: 122 NLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180

Query: 249 VTDKGISHLLCVGGTISQSLTTLDL-GYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD 307
            T+K +   +     +S+++T L+L GY   +    + T+      ++ L +     + +
Sbjct: 181 FTEKHVQVAV---AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237

Query: 308 ASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR-PSFRGLHWLGI 358
              +   +          L+ L L  C  +  ++L  +   P+ + L   GI
Sbjct: 238 DCFQEFFQ-------LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 91.9 bits (228), Expect = 6e-21
 Identities = 49/283 (17%), Positives = 89/283 (31%), Gaps = 52/283 (18%)

Query: 107 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEV 166
               ++ + L   S +  +    IL  C  L+   +     LSD   + L      LV +
Sbjct: 91  SPFRVQHMDLSN-SVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNS-NLVRL 147

Query: 167 RLLWCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSI--SCLRKLTALNLTG--A 221
            L  C   +   ++ L SS   L+ L+L  C    +  ++         +T LNL+G   
Sbjct: 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207

Query: 222 DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 281
           ++  S LS L +    +++L L     + +                L  L L     I  
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-----LNYLQHLSLSRCYDIIP 262

Query: 282 DGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDS 341
           + +L +                                  +   L+ L +   +     +
Sbjct: 263 ETLLELG---------------------------------EIPTLKTLQVFGIV--PDGT 287

Query: 342 LRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFC 384
           L+ +K      L  L I  +   +   P I    N+  W   C
Sbjct: 288 LQLLK----EALPHLQINCSHFTTIARPTIGNKKNQEIWGIKC 326

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 39/191 (20%), Positives = 74/191 (38%), Gaps = 13/191 (6%)

Query: 155 DLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 214
           D+TG   +   +     R    + + +  S   ++ +DL        T    +S   KL 
Sbjct: 62  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121

Query: 215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLG 274
            L+L G  ++D  ++ LA+ N  ++ L L GC   ++  +  LL    +    L  L+L 
Sbjct: 122 NLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLL----SSCSRLDELNLS 176

Query: 275 YMPGISDDGILTIAAAGI-GIIDLCVRSC-FYVTDASVEALARKQPDQEKSKQLRRLDLC 332
           +    ++  +    A     I  L +      +  + +  L R+ P       L  LDL 
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP------NLVHLDLS 230

Query: 333 NCIGLSVDSLR 343
           + + L  D  +
Sbjct: 231 DSVMLKNDCFQ 241

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  113 bits (285), Expect = 1e-27
 Identities = 59/343 (17%), Positives = 113/343 (32%), Gaps = 40/343 (11%)

Query: 18  NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG----- 72
                 + +         T+    P +  ++L+ +P+      +     G          
Sbjct: 42  RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS 101

Query: 73  -SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAIL 131
            S   L  + L R           V D  + L+++  K  + + L      S  G AAI 
Sbjct: 102 SSYTWLEEIRLKRMV---------VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA 152

Query: 132 LSCHSLKKFEVR--SASFLSDLAFHDLTGVPCALVEVRLLWCR-LITSETVKKLAS-SRN 187
            +C +LK+ ++R      +S            +LV + +      ++   +++L +   N
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 188 LEVLDLGGCKSIADTCLRSISCLRKLTALNLTG-----ADITDSGLSILAQGNLPIMNLC 242
           L+ L L     +       +    +L  L   G          SGLS+   G   +   C
Sbjct: 213 LKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL--RC 269

Query: 243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSC 302
           L G        +  +     ++   LTTL+L Y   +    ++ +      +  L V   
Sbjct: 270 LSGFWDAVPAYLPAVY----SVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324

Query: 303 FYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 345
             + DA +E LA         K LR L +       ++    +
Sbjct: 325 --IEDAGLEVLAS------TCKDLRELRVFPSEPFVMEPNVAL 359

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  110 bits (277), Expect = 1e-26
 Identities = 64/363 (17%), Positives = 130/363 (35%), Gaps = 52/363 (14%)

Query: 18  NLRSLSL--VLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL--GS 73
           +L SL++  +   ++   L  +    P L  L L      E LA L   +  L+ L  G 
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 74  CHHLT--------GLSLTRCRH-NHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSD 124
                         ++L+ C+       F       +  +   C  L ++ L   + V  
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY-ATVQS 303

Query: 125 AGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR--------LITS 176
                +L  C  L++  V    ++ D     L      L E+R+             +T 
Sbjct: 304 YDLVKLLCQCPKLQRLWVLD--YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361

Query: 177 ETVKKLASS-RNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGAD----------IT 224
           + +  ++     LE + L  C+ + +  L +I+     +T   L   +            
Sbjct: 362 QGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420

Query: 225 DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGI 284
           D G   + +    +  L L G   +TDK   ++    GT ++ +  L + +  G SD G+
Sbjct: 421 DIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYI----GTYAKKMEMLSVAF-AGDSDLGM 473

Query: 285 LTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW 344
             + +    +  L +R C +   A +   +       K + +R L + +C  +S  + + 
Sbjct: 474 HHVLSGCDSLRKLEIRDCPFGDKALLANAS-------KLETMRSLWMSSC-SVSFGACKL 525

Query: 345 VKR 347
           + +
Sbjct: 526 LGQ 528

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  109 bits (273), Expect = 5e-26
 Identities = 44/276 (15%), Positives = 91/276 (32%), Gaps = 39/276 (14%)

Query: 18  NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS-CHH 76
            L +L+L    +    L+ +    P L  L + D           +  +GL+ L S C  
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY----------IEDAGLEVLASTCKD 339

Query: 77  LTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHS 136
           L  L +             + + G+  +S GC  LESV L    ++++A    I  +  +
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPN 398

Query: 137 LKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS-RNLEVLDLGG 195
           + +F +      +                                +    ++L  L L G
Sbjct: 399 MTRFRLCIIEPKAPDYL-----------------TLEPLDIGFGAIVEHCKDLRRLSLSG 441

Query: 196 CKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI 254
              + D     I    +K+  L++  A  +D G+  +  G   +  L +R C       +
Sbjct: 442 L--LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499

Query: 255 SHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 290
           ++         +++ +L +     +S      +   
Sbjct: 500 ANASK-----LETMRSLWMSSC-SVSFGACKLLGQK 529

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 73.0 bits (179), Expect = 4e-14
 Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 34/228 (14%)

Query: 18  NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG----- 72
            L+ L ++ D I D  L  + ++   L EL +           + LT  GL S+      
Sbjct: 315 KLQRLWVL-DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373

Query: 73  ---------------------SCHHLTGLSLTRC-RHNHQGTFKRVNDMGMFLLSEGCKG 110
                                +  ++T   L                D+G   + E CK 
Sbjct: 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433

Query: 111 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW 170
           L  + L G   ++D  F  I      ++   V  A   SDL  H +     +L ++ +  
Sbjct: 434 LRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRD 490

Query: 171 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNL 218
           C       +   +    +  L +  C S++    + +   +K+  LN+
Sbjct: 491 CPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLG--QKMPKLNV 535

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 32/226 (14%), Positives = 66/226 (29%), Gaps = 32/226 (14%)

Query: 7   PILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSS 66
           P +T         ++   +     D     I      L  L L             LT  
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL----------LTDK 446

Query: 67  GLQSLGS-CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA 125
             + +G+    +  LS+              +D+GM  +  GC  L  + +       D 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFA---------GDSDLGMHHVLSGCDSLRKLEIRD-CPFGDK 496

Query: 126 GFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS 185
              A      +++   + S S +S  A          L +        +  E     +  
Sbjct: 497 ALLANASKLETMRSLWMSSCS-VSFGACK-------LLGQKMPKLNVEVIDERGAPDSRP 548

Query: 186 RNLEVLDLGGCKSIA---DTCLRSISCLRKLTALNLTGADITDSGL 228
            +  V  +   +++A         +  + + + +  +   IT +GL
Sbjct: 549 ESCPVERVFIYRTVAGPRFDMPGFVWNMDQDSTMRFSRQIITTNGL 594

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  107 bits (268), Expect = 2e-25
 Identities = 56/334 (16%), Positives = 105/334 (31%), Gaps = 46/334 (13%)

Query: 7   PILTSSYYSSFNLRSLSLV-LDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTS 65
             +   Y +    R L  + L  +    +  +      + +LDL              T 
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL--------ETE 308

Query: 66  SGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGG------- 118
                +  C +L  L               + D G+ +L++ CK L+ +R+         
Sbjct: 309 DHCTLIQKCPNLEVLETRNV----------IGDRGLEVLAQYCKQLKRLRIERGADEQGM 358

Query: 119 ---FSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 175
                 VS  G  A+   C  L+   V   S +++ +   +      L + RL+      
Sbjct: 359 EDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREE 417

Query: 176 SET-------VKKLASS-RNLEVLDL-GGCKSIADTCLRSI-SCLRKLTALNLTGADITD 225
             T       V+ L    + L           + D  L  I      +  + L     +D
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477

Query: 226 SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDL-GYMPGISDDGI 284
            GL   ++G   +  L +RGC   +++ I+  +    T   SL  L + GY   ++   +
Sbjct: 478 EGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAV----TKLPSLRYLWVQGYRASMTGQDL 532

Query: 285 LTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 318
           + +A     I  +  R    V             
Sbjct: 533 MQMARPYWNIELIPSRRVPEVNQQGEIREMEHPA 566

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  105 bits (263), Expect = 9e-25
 Identities = 63/393 (16%), Positives = 124/393 (31%), Gaps = 69/393 (17%)

Query: 18  NLRSLSLVLDVITDELLITITAS-LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS-CH 75
            L+S+     +++D  L  +  +    L  L L+             T+ GL S+ + C 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--------FTTDGLLSIVTHCR 164

Query: 76  HLTGLSLTRCRHNHQGT----------------------FKRVNDMGMFLLSEGCKGLES 113
            +  L +     + +                        F +++   +  ++  C+ L S
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 114 VRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 173
           V++G F  +   GF     +            S   D+   +         ++  L    
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEF-----CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 174 ITSETVKKLAS-SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA 232
           +    +  L   +  +  LDL       +     I     L  L      I D GL +LA
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLA 338

Query: 233 QGNLPIMNLCLRGCK----------RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDD 282
           Q    +  L +               V+ +G+  L        Q L  + + Y+  I+++
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL----AQGCQELEYMAV-YVSDITNE 393

Query: 283 GILTIAAAGIGIIDL-------CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC-NC 334
            + +I      + D          R      D  V +L          K+LRR       
Sbjct: 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI------GCKKLRRFAFYLRQ 447

Query: 335 IGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKG 367
            GL+   L ++ +     + W+ +G    + +G
Sbjct: 448 GGLTDLGLSYIGQ-YSPNVRWMLLGYVGESDEG 479

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  105 bits (262), Expect = 1e-24
 Identities = 58/379 (15%), Positives = 120/379 (31%), Gaps = 81/379 (21%)

Query: 18  NLRSLSLVL-DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCH 75
           +L +L L      T + L++I      +  L +E+   +      +     L  L     
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS------EKDGKWLHELAQHNT 192

Query: 76  HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCH 135
            L  L+           F +++   +  ++  C+ L SV++G F  +   GF     +  
Sbjct: 193 SLEVLNFYMTE------FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246

Query: 136 SL---------------------KKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI 174
                                  +K      S++       L      + ++ LL+  L 
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 175 TSETVKKLASSRNLEVLDLGGC------KSIADTC--LRSIS------------------ 208
           T +    +    NLEVL+          + +A  C  L+ +                   
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 209 ---------CLRKLTALNLTGADITDSGLSILAQG--NLPIMNLC-LRGCKRVTDKGISH 256
                      ++L  + +  +DIT+  L  +     NL    L  L   +R+TD  + +
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426

Query: 257 LLCVGGTISQSLTTLDLGYM-PGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 315
            +       + L          G++D G+  I      +  + +      +D  +   +R
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR 485

Query: 316 KQPDQEKSKQLRRLDLCNC 334
                     L++L++  C
Sbjct: 486 ------GCPNLQKLEMRGC 498

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 98.9 bits (246), Expect = 1e-22
 Identities = 61/354 (17%), Positives = 119/354 (33%), Gaps = 40/354 (11%)

Query: 23  SLVLDVITDELLITITASLPFLVELDLEDRPNTE-----PLARLDLTSSGLQSLG-SCHH 76
            + + +        ++   P L  L L+ +P        P       +  +  +  +   
Sbjct: 54  HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113

Query: 77  LTGLSLTRCRHNHQGTFKRVNDMGMFLLSEG-CKGLESVRLGGFSKVSDAGFAAILLSCH 135
           L  +   R           V+D+ +  L++     LE+++L   S  +  G  +I+  C 
Sbjct: 114 LKSVHFRRMI---------VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCR 164

Query: 136 SLKKFEVRSASFL--SDLAFHDLTGVPCALVEVRLLW--CRLITSETVKKLAS-SRNLEV 190
            +K   +  +SF        H+L     +L  +         I+ + ++ +A   R+L  
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 191 LDLGGCKSIADTCLRSI-SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRV 249
           + +G  + +         + L +    +L      D G+       +    LC  G   +
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNE----DIGMPEKYMNLVFPRKLCRLGLSYM 280

Query: 250 TDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDAS 309
               +  L       +  +  LDL Y    ++D   T+      +  L  R+   + D  
Sbjct: 281 GPNEMPILF----PFAAQIRKLDLLYALLETEDHC-TLIQKCPNLEVLETRNV--IGDRG 333

Query: 310 VEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRL 363
           +E LA+        KQL+RL +                 S RGL  L  G   L
Sbjct: 334 LEVLAQ------YCKQLKRLRIERGADEQGMEDE-EGLVSQRGLIALAQGCQEL 380

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 15/121 (12%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query: 18  NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHH 76
           N+R + L     +DE L+  +   P L +L++              +   + +       
Sbjct: 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC---------FSERAIAAAVTKLPS 514

Query: 77  LTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHS 136
           L  L +   R +       +    +  ++     +E +      +V+  G    +     
Sbjct: 515 LRYLWVQGYRAS-------MTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAH 567

Query: 137 L 137
           +
Sbjct: 568 I 568

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 59/312 (18%), Positives = 102/312 (32%), Gaps = 52/312 (16%)

Query: 15  SSFNLRSLSLVLDVITDELLITITASL---PFLVELDLEDRPNTEPLARLDLTSSGLQSL 71
           + F++   SL LD IT E   ++ A L     + E+ L             + +   + L
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN---------TIGTEAARWL 52

Query: 72  G----SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEG---CKGLESVRLGGFSKVSD 124
                S   L             G  K      + LL +    C  L +VRL   +    
Sbjct: 53  SENIASKKDLEIAEF---SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD-NAFGP 108

Query: 125 AG---FAAILLSCHSLKKFEVRS-----------ASFLSDLAFHDLTGVPCALVEVRLLW 170
                    L     L+   + +           A  L +LA +        L  +    
Sbjct: 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 171 CRLITSETVKKLA----SSRNLEVLDLGGC----KSIADTCLRSISCLRKLTALNLTGAD 222
            R + + ++K+ A    S R L  + +       + I    L  ++  ++L  L+L    
Sbjct: 169 NR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 223 ITDSGLSILAQG---NLPIMNLCLRGCKRVTDKGISHLL-CVGGTISQSLTTLDLGYMPG 278
            T  G S LA        +  L L  C  ++ +G + ++       +  L TL L Y   
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNE- 285

Query: 279 ISDDGILTIAAA 290
           I  D + T+   
Sbjct: 286 IELDAVRTLKTV 297

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 48/295 (16%), Positives = 85/295 (28%), Gaps = 48/295 (16%)

Query: 77  LTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAI---LLS 133
           + G SL       +        +   LL      ++ + L G + +       +   + S
Sbjct: 6   IEGKSLKLDAITTED----EKSVFAVLLE--DDSVKEIVLSG-NTIGTEAARWLSENIAS 58

Query: 134 CHSLKKFEVRSASFLSDLAFHDLTGVP---------CALVEVRLLWCRLITSETVKKLA- 183
              L+  E  S  F   +       +            L  VRL           + L  
Sbjct: 59  KKDLEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLID 116

Query: 184 ---SSRNLEVLDLG-------GCKSIAD-----TCLRSISCLRKLTALNLTGADITDSGL 228
                  LE L L            IA         +       L ++      + +  +
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 229 SILAQG---NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL 285
              A+    +  +  + +     +  +GI HLL  G    Q L  LDL      +  G  
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSS 234

Query: 286 TIAAA---GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL-CNCIG 336
            +A A      + +L +  C  ++     A+       E +  L+ L L  N I 
Sbjct: 235 ALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLE-NIGLQTLRLQYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 36/250 (14%), Positives = 76/250 (30%), Gaps = 55/250 (22%)

Query: 18  NLRSLSLVLDVITDELLITITASL---PFLVELDLEDRPN------TEPLARLDLTSSGL 68
            L ++ L  +         +   L     L  L L +  N         +AR     +  
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN--NGLGPQAGAKIARALQELAVN 152

Query: 69  QSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEG---CKGLESVRLGGFSKVSDA 125
           +   +   L  +   R R         + +  M   ++     + L +V++   + +   
Sbjct: 153 KKAKNAPPLRSIICGRNR---------LENGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPE 202

Query: 126 G----FAAILLSCHSLKKFEVRS-------ASFLSD-LAFHDLTGVPCALVEVRLLWCRL 173
           G        L  C  LK  +++        +S L+  L           L E+ L  C  
Sbjct: 203 GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW------PNLRELGLNDCL- 255

Query: 174 ITSETVKKLASS------RNLEVLDLGGCKSIADTCLRSI-----SCLRKLTALNLTGAD 222
           +++     +  +        L+ L L   + I    +R++       +  L  L L G  
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 223 ITDSGLSILA 232
            ++    +  
Sbjct: 315 FSEEDDVVDE 324

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.5 bits (176), Expect = 8e-14
 Identities = 64/351 (18%), Positives = 126/351 (35%), Gaps = 61/351 (17%)

Query: 16  SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS-- 73
           S +++SL +  + ++D     +   L     + L+D           LT +  + + S  
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC---------GLTEARCKDISSAL 52

Query: 74  --CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCK----GLESVRLGGFSKVSDAGF 127
                L  L+L   R N       + D+G+  + +G +     ++ + L     ++ AG 
Sbjct: 53  RVNPALAELNL---RSN------ELGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLTGAGC 102

Query: 128 AAI---LLSCHSLKKFEVRSASFLSDLAFHDLTG----VPCALVEVRLLWCRLITSETVK 180
             +   L +  +L++  + S + L D     L        C L +++L +C  +++ + +
Sbjct: 103 GVLSSTLRTLPTLQELHL-SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCE 160

Query: 181 KLAS----SRNLEVLDLGGCKSIADTCLRSIS-----CLRKLTALNLTGADITDSGLSIL 231
            LAS      + + L +     I +  +R +         +L AL L    +T      L
Sbjct: 161 PLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 232 AQG---NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA 288
                    +  L L   K + D G++ L       S  L TL +    GI+  G   + 
Sbjct: 220 CGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWE-CGITAKGCGDLC 277

Query: 289 AA-----GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 334
                   +  + L   +   + D     L       E   QL  L + +C
Sbjct: 278 RVLRAKESLKELSL---AGNELGDEGARLLCETL--LEPGCQLESLWVKSC 323

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 70/357 (19%), Positives = 114/357 (31%), Gaps = 99/357 (27%)

Query: 15  SSFNLRSLSLVLDVITDE---LLITITASLPFLVELDLED---------------RPNTE 56
            S  ++ LSL    +T     +L +   +LP L EL L D                    
Sbjct: 83  PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142

Query: 57  PLARLDL-----TSSGLQSLGS----CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEG 107
            L +L L     +++  + L S          L++    +N         + G+ +L +G
Sbjct: 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV---SNNDIN------EAGVRVLCQG 193

Query: 108 CK----GLESVRLGGFSKVSDAG---FAAILLSCHSLKKFEVRS-------ASFLSDLAF 153
            K     LE+++L     V+         I+ S  SL++  + S        + L     
Sbjct: 194 LKDSPCQLEALKLES-CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252

Query: 154 HDLTGVPCALVEVRLLWCRL---------------------------ITSETVKKLA--- 183
           H        L  + +  C +                           +  E  + L    
Sbjct: 253 HPS----SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL 308

Query: 184 --SSRNLEVLDLGGCKSIADTCLRSIS----CLRKLTALNLTGADITDSGLSILAQG--- 234
                 LE L +  C S    C    S      R L  L ++   + D+G+  L QG   
Sbjct: 309 LEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 235 -NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 290
               +  L L  C  V+D   S L       + SL  LDL     + D GIL +  +
Sbjct: 368 PGSVLRVLWLADC-DVSDSSCSSL-AATLLANHSLRELDLSNNC-LGDAGILQLVES 421

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 53/295 (17%), Positives = 92/295 (31%), Gaps = 64/295 (21%)

Query: 95  RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAG---FAAILLSCHSLKKFEVRSASFLSDL 151
            ++D     L    +  + VRL     +++A     ++ L    +L +  +RS + L D+
Sbjct: 14  ELSDARWAELLPLLQQCQVVRLDD-CGLTEARCKDISSALRVNPALAELNLRS-NELGDV 71

Query: 152 AFHDLTGV----PCALVEVRLLWCRLITSETVKKLAS----SRNLEVLDLGGCKSIADTC 203
             H +        C + ++ L  C  +T      L+S       L+ L L     + D  
Sbjct: 72  GVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG 129

Query: 204 LRSIS-----CLRKLTALNLTGADITDSGLSILAQG------------------------ 234
           L+ +         +L  L L    ++ +    LA                          
Sbjct: 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 189

Query: 235 --------NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT 286
                      +  L L  C  VT       LC       SL  L LG    + D G+  
Sbjct: 190 LCQGLKDSPCQLEALKLESCG-VTSDNCRD-LCGIVASKASLRELALGSNK-LGDVGMAE 246

Query: 287 IAAAGI----GIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL-CNCIG 336
           +    +     +  L +  C  +T      L R        + L+ L L  N +G
Sbjct: 247 LCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCR---VLRAKESLKELSLAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 8e-08
 Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 17/224 (7%)

Query: 185 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA---QGNLPIMNL 241
           S +++ LD+   +         +  L++   + L    +T++    ++   + N  +  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 242 CLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG---IIDLC 298
            LR    + D G+  +L    T S  +  L L     ++  G   +++       + +L 
Sbjct: 62  NLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 299 VRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR--PSFRGLHWL 356
           +     + DA ++ L       +   +L +L L  C  LS  S   +     +      L
Sbjct: 120 LSDNL-LGDAGLQLLCEGL--LDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKEL 175

Query: 357 GIGQTRLASKGNPVITEI--HNERPWLTFCLDGCEIGCHDGWQF 398
            +    +   G  V+ +    +        L+ C +   D  + 
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT-SDNCRD 218

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 48/269 (17%), Positives = 80/269 (29%), Gaps = 72/269 (26%)

Query: 18  NLRSLSLVLDVITDELLITITASL---PFLVELDLED----------------RPNTEPL 58
            L +L L    +T +    +   +     L EL L                   P++  L
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR-L 258

Query: 59  ARLDLTSSGL---------QSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEG-- 107
             L +   G+         + L +   L  LSL     N  G      D G  LL E   
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSL---AGNELG------DEGARLLCETLL 309

Query: 108 --CKGLESVRLGGFSKVSDAGFAAI---LLSCHSLKKFEVRS-------ASFLSDLAFHD 155
                LES+ +      + A  +     L     L + ++ +          L       
Sbjct: 310 EPGCQLESLWVKS-CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG---- 364

Query: 156 LTGVPCALVEVRLLWCRLITSETVKKLAS----SRNLEVLDLG-------GCKSIADTCL 204
           L      L  + L  C  ++  +   LA+    + +L  LDL        G   + ++ +
Sbjct: 365 LGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES-V 422

Query: 205 RSISCLRKLTALNLTGADITDSGLSILAQ 233
           R   C   L  L L     ++     L  
Sbjct: 423 RQPGC--LLEQLVLYDIYWSEEMEDRLQA 449

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.6 bits (160), Expect = 6e-13
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD-ITDSGLSILAQG---NLPIM 239
               ++ +D      I       +  L+ +  + L     I D  L  L+Q       ++
Sbjct: 59  DKYKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSML 117

Query: 240 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA 288
            + +  C  VTDKGI  L        ++L  L L  +PG+ +   +  A
Sbjct: 118 EMEIISCGNVTDKGIIAL-----HHFRNLKYLFLSDLPGVKEKEKIVQA 161

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 211 RKLTALNLTGADITDSGLSILAQGNLP-IMNLCLRGCKRVTDKGISHLLCVGGTISQSLT 269
            K+ A++ T + I   G        L  +  + L  C  + D  +  L      + +S+ 
Sbjct: 61  YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSML 117

Query: 270 TLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 317
            +++     ++D GI+ +      +  L +     V +      A K 
Sbjct: 118 EMEIISCGNVTDKGIIALHHFR-NLKYLFLSDLPGVKEKEKIVQAFKT 164

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 18/127 (14%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 95  RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFH 154
           + +   +         ++++     S +   GF  +      ++K  +    ++ D    
Sbjct: 47  QKDYNHLPTGPLDKYKIQAIDATD-SCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLE 104

Query: 155 DLTGVPCA---LVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLR 211
            L+ +      ++E+ ++ C  +T + +  L   RNL+ L L     + +      +   
Sbjct: 105 RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKT 164

Query: 212 KLTALNL 218
            L +L L
Sbjct: 165 SLPSLEL 171

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 16/121 (13%)

Query: 225 DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGI 284
            + L         I  +       +   G  H+  +     Q +  + L     I D  +
Sbjct: 50  YNHLPTGPLDKYKIQAIDATDS-CIMSIGFDHMEGL-----QYVEKIRLCKCHYIEDGCL 103

Query: 285 LTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDS 341
             ++        ++++ + SC  VTD  + AL          + L+ L L +  G+    
Sbjct: 104 ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-------FRNLKYLFLSDLPGVKEKE 156

Query: 342 L 342
            
Sbjct: 157 K 157

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 21/111 (18%)

Query: 44  LVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFL 103
           +  +D  D           + S G   +    ++  + L +C +        + D  +  
Sbjct: 63  IQAIDATD---------SCIMSIGFDHMEGLQYVEKIRLCKCHY--------IEDGCLER 105

Query: 104 LSEGCKG---LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDL 151
           LS+       +  + +     V+D G  A L    +LK   +     + + 
Sbjct: 106 LSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEK 155

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 29/194 (14%), Positives = 60/194 (30%), Gaps = 25/194 (12%)

Query: 159 VPCALVEVRLLWCRLITSETVKKLAS-----SRNLEVLDLGGCKSIADTCLRSI-----S 208
           +P  +  + L     + S +  +L         ++  L+L G   +       +     +
Sbjct: 20  IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAA 77

Query: 209 CLRKLTALNLTGADITDSGLSILAQG----NLPIMNLCLRGCKRVTDKGISHLLCVGGTI 264
               +T+LNL+G  ++      L +        I  L L      + K  S        +
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNL 136

Query: 265 SQSLTTLDLGYMPGISDDGILTIAAA----GIGIIDLCVRSCFYVTDASVEALARKQPDQ 320
             S+T+L+L     +       +          +  L +R    +   +   LA+     
Sbjct: 137 PASITSLNLRG-NDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAK--FLA 192

Query: 321 EKSKQLRRLDLCNC 334
                +  LDL   
Sbjct: 193 SIPASVTSLDLSAN 206

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 17/156 (10%)

Query: 187 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQG----NLPIMNLC 242
           N ++    G   + +      S    +T+L+L+  ++       L Q        + +L 
Sbjct: 2   NYKLTLHPGSNPVEEF----TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLN 57

Query: 243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA----GIGIIDLC 298
           L G   +  K    L+ +   I  ++T+L+L     +S      +          I  L 
Sbjct: 58  LSGNS-LGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLD 115

Query: 299 VRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 334
           +      +  S       Q        +  L+L   
Sbjct: 116 LGWN-DFSSKSSSEFK--QAFSNLPASITSLNLRGN 148

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 36/296 (12%), Positives = 91/296 (30%), Gaps = 63/296 (21%)

Query: 18  NLRSLSLVLDVITDELLITITASLPF----LVELDLEDRPNTEPLARLDLTSSGLQSLGS 73
           N+ SL+L  + ++ +    +  +L      +  LDL            D +S        
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW---------NDFSSKSSSEFKQ 131

Query: 74  -----CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKG----LESVRLGGFSKVSD 124
                   +T L+L             +       L +        + S+ L G + ++ 
Sbjct: 132 AFSNLPASITSLNLRGND---------LGIKSSDELIQILAAIPANVNSLNLRG-NNLAS 181

Query: 125 AGFAAI---LLSCH-SLKKFEVRS-------ASFLSDLAFHDLTGVPCALVEVRLLWCRL 173
              A +   L S   S+   ++ +        + L+ +     + +P  +V + L     
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI----FSSIPNHVVSLNLCLNC- 236

Query: 174 ITSETVKKLASS----RNLEVLDLGGC--KSIADTCLRSIS----CLRKLTALNLTGADI 223
           +   +++ L       ++L+ + L     K+++    +++      ++K+  ++  G +I
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Query: 224 TDSGLSILAQG----NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGY 275
             S    ++      +       L     +              I   L       
Sbjct: 297 HPSHSIPISNLIRELSGKADVPSLLNQC-LIFAQKHQTNIEDLNIPDELRESIQTC 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 59.0 bits (143), Expect = 8e-10
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 23/189 (12%)

Query: 162 ALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTCLRSI-SCLRKLTA 215
           +L ++ L   R +T      +A         L+ ++L  C  +    LR++     +   
Sbjct: 73  SLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARK 130

Query: 216 LNLTGADITDSGLSILAQG----NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTL 271
           L L    +       L          I  L L     +T  G++  L  G   + S+T L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAV-LMEGLAGNTSVTHL 188

Query: 272 DLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRR 328
            L +  G+ D+G+  +AA       + +L V       D +  ALAR      +   L  
Sbjct: 189 SLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARA---AREHPSLEL 243

Query: 329 LDL-CNCIG 336
           L L  N + 
Sbjct: 244 LHLYFNELS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 22/189 (11%)

Query: 161 CALVEVRLLWCRLITSETVKKLASS-RNLEVLDLG-------GCKSIADTCLRSISCLRK 212
            AL EV L  C+ +    ++ L         L L         CK + D  L    C  +
Sbjct: 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-LLHDQC--Q 156

Query: 213 LTALNLTGADITDSGLSILAQG---NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLT 269
           +T L L+   +T +G+++L +G   N  + +L L     + D+G+  LL      ++ L 
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE-LLAAQLDRNRQLQ 214

Query: 270 TLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQL 326
            L++ Y  G  D   L +A A      +  L +     ++    + L       E   ++
Sbjct: 215 ELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARV 272

Query: 327 RRLDLCNCI 335
                    
Sbjct: 273 VVSLTEGTA 281

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 41/312 (13%), Positives = 77/312 (24%), Gaps = 86/312 (27%)

Query: 15  SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS- 73
               L  ++L    +    L T+        +L L+   N        L     + L   
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL--N-------SLGPEACKDLRDL 149

Query: 74  ----CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEG---CKGLESVRLGGFSKVSDAG 126
                  +T L L+            +   G+ +L EG      +  + L   + + D G
Sbjct: 150 LLHDQCQITTLRLSNNP---------LTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEG 199

Query: 127 FAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA--- 183
              +      L                         L E+ + +           LA   
Sbjct: 200 LELL---AAQLD--------------------RNRQLQELNVAYNG-AGDTAALALARAA 235

Query: 184 -SSRNLEVLDLG-------GCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA--- 232
               +LE+L L        G + + D    +     ++      G  +++    IL+   
Sbjct: 236 REHPSLELLHLYFNELSSEGRQVLRDL-GGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294

Query: 233 -----------QGNLPIMNLCLRGCKRVTDKG---ISHLLCVGGTISQSLTTLDLGYMPG 278
                      Q +L ++   L    R         + LL V       +  L       
Sbjct: 295 RNLNSWDRARVQRHLELLLRDLEDS-RGATLNPWRKAQLLRV----EGEVRALLEQL-GS 348

Query: 279 ISDDGILTIAAA 290
                       
Sbjct: 349 SGSPSGSWSHPQ 360

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 18/133 (13%)

Query: 210 LRKLTALNLTGADITDSGLSILAQG----NLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 265
           L  L  LNL G  +T    +++A         +  + L  C+ +   G+  LL V     
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPV----F 125

Query: 266 QSLTTLDLGYMPGISDDGILTIAAA----GIGIIDLCVRSCFYVTDASVEALARKQPDQE 321
                L L     +  +    +          I  L + +   +T A V  L        
Sbjct: 126 LRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG---LA 180

Query: 322 KSKQLRRLDLCNC 334
            +  +  L L + 
Sbjct: 181 GNTSVTHLSLLHT 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 148 LSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSI 207
           L+++   DLTG+      ++ L    I +     ++   NLE L + G   +    + ++
Sbjct: 51  LANINVTDLTGI-EYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD-VTSDKIPNL 108

Query: 208 SCLRKLTALNLTGADITDSGLSILAQGNLP-IMNLCLRGCKRVTD-KGISHLLCVGGTIS 265
           S L  LT L+++ +   DS L+ +    LP + ++ L     +TD   +  L        
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGAITDIMPLKTL-------- 158

Query: 266 QSLTTLDLGY 275
             L +L++ +
Sbjct: 159 PELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 187 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP-IMNLCLRG 245
           N++ L +       +     IS L  L  L + G D+T   +  L+   L  +  L +  
Sbjct: 67  NIKDLTINNIH-ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLS--GLTSLTLLDISH 121

Query: 246 CKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 281
                D  ++ +  +       + ++DL Y   I+D
Sbjct: 122 SA-HDDSILTKINTL-----PKVNSIDLSYNGAITD 151

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 24/171 (14%)

Query: 58  LARLDLTSSG---LQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESV 114
           L  + L +     L  +   H++  L++               +        G   LE +
Sbjct: 46  LTYITLANINVTDLTGIEYAHNIKDLTINNIH---------ATNYNPI---SGLSNLERL 93

Query: 115 RLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI 174
           R+ G   V+       L    SL   ++  ++   D     +  +P  +  + L +   I
Sbjct: 94  RIMG-KDVTSDKIPN-LSGLTSLTLLDISHSA-HDDSILTKINTLP-KVNSIDLSYNGAI 149

Query: 175 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITD 225
           T   +  L +   L+ L++     + D   R I    KL  L      I  
Sbjct: 150 TD--IMPLKTLPELKSLNIQFDG-VHD--YRGIEDFPKLNQLYAFSQTIGG 195

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 25/148 (16%)

Query: 161 CALVEVRLLWCRLITSETVKKLA----SSRNLEVLDLGGCKSIADTCLRSISCL----RK 212
             L EV +   + ++ E ++ L     +S+++E   L     I+D+  R +  L      
Sbjct: 41  TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPS 99

Query: 213 LTALNLTGADITDSGLSILAQG-----NLPIMNLCLRGCKRVTDKG---ISHLLCVGGTI 264
           L  LN+    +T   L+ L +      ++       +    + ++    +   +      
Sbjct: 100 LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE---- 155

Query: 265 SQSLTTLDLGYMPGISDDGILTIAAAGI 292
           ++SL  + +      +        +  +
Sbjct: 156 NESLLRVGI----SFASMEARHRVSEAL 179

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 23/151 (15%)

Query: 199 IADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQG---NLPIMNLCLRGCKRVTDKG- 253
           + +T  R  +    L  +NL    +I    L   A+    N  +    + G  R  D   
Sbjct: 24  VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVA 82

Query: 254 --ISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA-----GIGIIDLCVRSCFYVT 306
             ++ +L V    + +L +L++     IS  GIL +  A      +  + +       + 
Sbjct: 83  FALAEMLKV----NNTLKSLNVES-NFISGSGILALVEALQSNTSLIELRIDN-QSQPLG 136

Query: 307 DASVEALARKQPDQEKSKQLRRLDL-CNCIG 336
           +     +A      EK+  L +        G
Sbjct: 137 NNVEMEIANM---LEKNTTLLKFGYHFTQQG 164

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 20/130 (15%)

Query: 161 CALVEVRLLWCRLITSETVKKLA----SSRNLEVLDLGGCKSIADTCLRSIS-CLRK--- 212
             L EV L     I   T+K  A    ++  ++   + G +   D    +++  L+    
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNT 94

Query: 213 LTALNLTGADITDSGLSILAQG---NLPIMNLCLRG-CKRVTDKG---ISHLLCVGGTIS 265
           L +LN+    I+ SG+  L +    N  ++ L +    + + +     I+++L      +
Sbjct: 95  LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK----N 150

Query: 266 QSLTTLDLGY 275
            +L      +
Sbjct: 151 TTLLKFGYHF 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.8
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.74
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.64
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.62
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.58
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.58
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.53
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.52
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.51
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.5
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.5
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.48
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.46
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.45
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.44
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.41
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.4
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.33
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.12
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.03
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.97
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.93
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.85
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.75
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.75
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.72
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.53
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.51
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.37
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.24
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.2
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.01
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.99
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.98
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.95
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.76
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.47
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.71
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	84.01

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.97  E-value=7.5e-29  Score=242.28  Aligned_cols=342  Identities=19%  Similarity=0.214  Sum_probs=239.2

Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhc-CCCCCceEEecccccCCC--
Q 015585           14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCHHLTGLSLTRCRHNHQ--   90 (404)
Q Consensus        14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~--   90 (404)
                      ..+++|++|+|+++.+++..+..+.+.+++|++|++.+|        ..+++.++..+. .+++|++|++++|.....  
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~--------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~  173 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC--------EGFSTDGLAAIAATCRNLKELDLRESDVDDVSG  173 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC--------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc--------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence            467889999999888888888888767899999999887        345555555553 677777777776641000  


Q ss_pred             ----------CCc---------cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHH-------------------
Q 015585           91 ----------GTF---------KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL-------------------  132 (404)
Q Consensus        91 ----------~~~---------~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-------------------  132 (404)
                                ..+         ..+....+..+...+++|+.|++++|..+  .++..++.                   
T Consensus       174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~  251 (594)
T 2p1m_B          174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRP  251 (594)
T ss_dssp             GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred             HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccch
Confidence                      000         12445566666666788888888775221  11222222                   


Q ss_pred             -----------------------------------hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH
Q 015585          133 -----------------------------------SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE  177 (404)
Q Consensus       133 -----------------------------------~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~  177 (404)
                                                         .+++|++|+++++. ++...+..+...+++|+.|++.+|  +.+.
T Consensus       252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~  328 (594)
T 2p1m_B          252 DVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDA  328 (594)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHH
T ss_pred             hhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHH
Confidence                                               33555555555555 555556555666677777777665  4455


Q ss_pred             HHHHhh-CCCCCCEEec--------cCCCCCChHHHHhhh-CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeec---
Q 015585          178 TVKKLA-SSRNLEVLDL--------GGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLR---  244 (404)
Q Consensus       178 ~~~~l~-~~~~L~~L~l--------~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~---  244 (404)
                      ++..+. .+++|++|++        ..|..+++..+..+. .+++|++|.+..+.+++.++..++..+++|++|++.   
T Consensus       329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            555555 4777777777        334566666666665 378888887777788888777777778888888887   


Q ss_pred             --CCCCCc----HHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCC
Q 015585          245 --GCKRVT----DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP  318 (404)
Q Consensus       245 --~~~~l~----~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  318 (404)
                        +|..++    +.++..+.    ..+++|+.|++++  .+++.++..+...+++|+.|++++|. +++.++..++.   
T Consensus       409 ~~~~~~l~~~~~~~~~~~l~----~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~---  478 (594)
T 2p1m_B          409 PKAPDYLTLEPLDIGFGAIV----EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLS---  478 (594)
T ss_dssp             TTCCCTTTCCCTHHHHHHHH----HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHH---
T ss_pred             CCCcccccCCchhhHHHHHH----hhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHh---
Confidence              455676    56666665    4677888888866  78888888887778889999998885 88888888866   


Q ss_pred             CcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEec
Q 015585          319 DQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLD  386 (404)
Q Consensus       319 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~~  386 (404)
                         ++++|+.|++++|+ +++.++..+. ..+++|+.|++++|.+   ..+.++.++..+|.+++.+.
T Consensus       479 ---~~~~L~~L~L~~n~-~~~~~~~~~~-~~l~~L~~L~l~~~~~---~~~~~~~l~~~lp~l~i~~~  538 (594)
T 2p1m_B          479 ---GCDSLRKLEIRDCP-FGDKALLANA-SKLETMRSLWMSSCSV---SFGACKLLGQKMPKLNVEVI  538 (594)
T ss_dssp             ---HCTTCCEEEEESCS-CCHHHHHHTG-GGGGGSSEEEEESSCC---BHHHHHHHHHHCTTEEEEEE
T ss_pred             ---cCCCcCEEECcCCC-CcHHHHHHHH-HhCCCCCEEeeeCCCC---CHHHHHHHHHhCCCCEEEEe
Confidence               68899999999975 4777776554 3578999999999987   57778888888899985443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.97  E-value=3.4e-28  Score=237.59  Aligned_cols=328  Identities=21%  Similarity=0.254  Sum_probs=254.7

Q ss_pred             CCCCCcEEeccCC-CCChHHHHHHHhhCCCccEEeecCCCCCC--ccccc-------------------ccchhhhhhh-
Q 015585           15 SSFNLRSLSLVLD-VITDELLITITASLPFLVELDLEDRPNTE--PLARL-------------------DLTSSGLQSL-   71 (404)
Q Consensus        15 ~~~~L~~L~L~~~-~~~~~~~~~i~~~~~~L~~L~l~~~~~~~--~~~~~-------------------~~~~~~~~~l-   71 (404)
                      .+++|++|+++++ .+++..+..+...+++|++|++++|....  +.+..                   .++...+..+ 
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            6899999999975 77777788888779999999999875211  11100                   1222333333 


Q ss_pred             cCCCCCceEEecccccCC-----------CC---------------------------------CccccChhhHHHHHhc
Q 015585           72 GSCHHLTGLSLTRCRHNH-----------QG---------------------------------TFKRVNDMGMFLLSEG  107 (404)
Q Consensus        72 ~~~~~L~~L~l~~~~~~~-----------~~---------------------------------~~~~~~~~~l~~l~~~  107 (404)
                      ..+++|++|++++|....           ..                                 ++.......+..+...
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~  287 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV  287 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence            467888888888762100           00                                 1122223334444446


Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEc--------cCCCCCCHHHH
Q 015585          108 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRL--------LWCRLITSETV  179 (404)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l--------~~~~~~~~~~~  179 (404)
                      +++|++|++++|. +++.++..++..+++|+.|++.++  +++..+..+...+++|++|++        .++..+++.++
T Consensus       288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence            7899999999976 888888888899999999999988  667778888878999999999        44566888888


Q ss_pred             HHhh-CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEcc--C----CccC----HHHHHHHHhcCCCcCEEeecCCC
Q 015585          180 KKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLT--G----ADIT----DSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       180 ~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~l~----~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      ..+. .+++|++|.+. |+.+++..+..++ .+++|+.|++.  +    +.++    +.++..+...+++|++|++++  
T Consensus       365 ~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--  441 (594)
T 2p1m_B          365 VSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--  441 (594)
T ss_dssp             HHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--
T ss_pred             HHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--
Confidence            8887 59999999665 4688888888776 58999999998  3    4677    778888888899999999976  


Q ss_pred             CCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCc
Q 015585          248 RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLR  327 (404)
Q Consensus       248 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~  327 (404)
                      .+++.++..+.    ..+++|+.|++++| .+++.++..+...+++|+.|++++|+ +++.++..++.      .+++|+
T Consensus       442 ~l~~~~~~~l~----~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~------~l~~L~  509 (594)
T 2p1m_B          442 LLTDKVFEYIG----TYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANAS------KLETMR  509 (594)
T ss_dssp             SCCHHHHHHHH----HHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHTGG------GGGGSS
T ss_pred             cccHHHHHHHH----HhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHHHH------hCCCCC
Confidence            58898888887    45789999999997 68999998888889999999999997 69988887776      789999


Q ss_pred             EEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          328 RLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       328 ~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      .|++++|+ ++..++..+. ..+|.|+...+..+.
T Consensus       510 ~L~l~~~~-~~~~~~~~l~-~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          510 SLWMSSCS-VSFGACKLLG-QKMPKLNVEVIDERG  542 (594)
T ss_dssp             EEEEESSC-CBHHHHHHHH-HHCTTEEEEEECSSS
T ss_pred             EEeeeCCC-CCHHHHHHHH-HhCCCCEEEEecCCC
Confidence            99999985 5888888875 358999887777554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.3e-27  Score=233.45  Aligned_cols=344  Identities=19%  Similarity=0.223  Sum_probs=199.8

Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHhhCCC-ccEEeecCCCCCCcccccccchhhhhhh-cCCCCCceEEecccccCCCCC
Q 015585           15 SSFNLRSLSLVLDVITDELLITITASLPF-LVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        15 ~~~~L~~L~L~~~~~~~~~~~~i~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      .+++|++|+|+++.+++..+..+...+++ |++|++.+|        ..++..++..+ ..+++|++|++++|..     
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~--------~~~~~~~l~~~~~~~~~L~~L~L~~~~~-----  176 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC--------SGFTTDGLLSIVTHCRKIKTLLMEESSF-----  176 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC--------EEEEHHHHHHHHHHCTTCSEEECTTCEE-----
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC--------CCcCHHHHHHHHhhCCCCCEEECccccc-----
Confidence            67888888888877887777777665666 888888887        33455555554 4788888888887631     


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCC--CCHHHHHHHHHhCCCCcEEEecCCCCCC---------------------
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSK--VSDAGFAAILLSCHSLKKFEVRSASFLS---------------------  149 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~---------------------  149 (404)
                       .......+..+...+++|++|+++++..  +....+..+...+++|+.|+++++....                     
T Consensus       177 -~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~  255 (592)
T 3ogk_B          177 -SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE  255 (592)
T ss_dssp             -ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCC
T ss_pred             -cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccc
Confidence             1122223455555666777776665321  2355566666666666666666653100                     


Q ss_pred             --------------------------HHHHHHHHcCCCCccEEEccCCCCCCHHHHHH-hhCCCCCCEEeccCCCCCChH
Q 015585          150 --------------------------DLAFHDLTGVPCALVEVRLLWCRLITSETVKK-LASSRNLEVLDLGGCKSIADT  202 (404)
Q Consensus       150 --------------------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~  202 (404)
                                                ...+..+...+++|++|++++|. +.+..+.. +..+++|++|++..  .+.+.
T Consensus       256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~  332 (592)
T 3ogk_B          256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDR  332 (592)
T ss_dssp             CTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHH
T ss_pred             ccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHH
Confidence                                      11112222334556666666655 45444432 33556666666552  34444


Q ss_pred             HHHhh-hCCCCCCEEEcc-----------CCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccE
Q 015585          203 CLRSI-SCLRKLTALNLT-----------GADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTT  270 (404)
Q Consensus       203 ~~~~l-~~~~~L~~L~l~-----------~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~  270 (404)
                      .+..+ ..+++|++|++.           .+.+++.++..++..+++|++|.+. +..+++.++..+.    ..+++|++
T Consensus       333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~----~~~~~L~~  407 (592)
T 3ogk_B          333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIG----TYLKNLCD  407 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHH----HHCCSCCE
T ss_pred             HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHH----hhCCCCcE
Confidence            44433 345666666666           2356666666655556666666663 3335665555554    33556666


Q ss_pred             EecC---CCCCCCH----HHHHHHHHhCCCCceEeecCCC-CCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHH
Q 015585          271 LDLG---YMPGISD----DGILTIAAAGIGIIDLCVRSCF-YVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL  342 (404)
Q Consensus       271 L~l~---~~~~l~~----~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~  342 (404)
                      |+++   .++.+++    .++..+...+++|+.|++++|. .+++.++..++.      .+++|+.|++++| .+++.++
T Consensus       408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~------~~~~L~~L~L~~n-~l~~~~~  480 (592)
T 3ogk_B          408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ------YSPNVRWMLLGYV-GESDEGL  480 (592)
T ss_dssp             EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH------SCTTCCEEEECSC-CSSHHHH
T ss_pred             EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH------hCccceEeeccCC-CCCHHHH
Confidence            6665   2334443    3455555556666666665543 366666666665      5666777777664 4666555


Q ss_pred             HhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccc
Q 015585          343 RWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG  391 (404)
Q Consensus       343 ~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~  391 (404)
                      ..+. ..+++|++|++++|.+   ++..+..+...+|+++ +++.+|.+.
T Consensus       481 ~~~~-~~~~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          481 MEFS-RGCPNLQKLEMRGCCF---SERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHH-TCCTTCCEEEEESCCC---BHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHHH-hcCcccCeeeccCCCC---cHHHHHHHHHhcCccCeeECcCCcCC
Confidence            5443 2466777777777765   4555566666667776 777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=8.5e-28  Score=234.67  Aligned_cols=333  Identities=17%  Similarity=0.222  Sum_probs=244.1

Q ss_pred             CcEEeccCC-CCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhh---hhh-hcCCCCCceEEecccccCCCCCc
Q 015585           19 LRSLSLVLD-VITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG---LQS-LGSCHHLTGLSLTRCRHNHQGTF   93 (404)
Q Consensus        19 L~~L~L~~~-~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~~-l~~~~~L~~L~l~~~~~~~~~~~   93 (404)
                      |++|+|+++ .+.+..+..+...+++|++|++++|.         +++.+   +.. ...+++|+.|+++++.      +
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~---------~~~~~~~~l~~~~~~~~~L~~L~L~~n~------~  204 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS---------FSEKDGKWLHELAQHNTSLEVLNFYMTE------F  204 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE---------EECCCSHHHHHHHHHCCCCCEEECTTCC------C
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc---------ccCcchhHHHHHHhcCCCccEEEeeccC------C
Confidence            777777753 35555666666667777777777762         22111   111 2345555555554431      1


Q ss_pred             cccChhhHHHHHhcCCCCcEEEcCCCCC-----------------------------------------------CCHHH
Q 015585           94 KRVNDMGMFLLSEGCKGLESVRLGGFSK-----------------------------------------------VSDAG  126 (404)
Q Consensus        94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~-----------------------------------------------~~~~~  126 (404)
                      ..+....+..+...+++|+.|+++++..                                               .....
T Consensus       205 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  284 (592)
T 3ogk_B          205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE  284 (592)
T ss_dssp             SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTT
T ss_pred             CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhH
Confidence            1223344444444455555555544311                                               11222


Q ss_pred             HHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccC----------
Q 015585          127 FAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGG----------  195 (404)
Q Consensus       127 ~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~----------  195 (404)
                      +..+...+++|++|+++++. ++...+..+...+++|+.|++.+  .+.+.++..+. .+++|++|+++.          
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~  361 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE  361 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred             HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence            34445667899999999997 88888877788999999999984  46777777765 689999999995          


Q ss_pred             CCCCChHHHHhhh-CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecC---CCCCcH----HHHHHHHhhcCCCCCC
Q 015585          196 CKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRG---CKRVTD----KGISHLLCVGGTISQS  267 (404)
Q Consensus       196 ~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~~~~~  267 (404)
                      |+.+++..+..+. .+++|++|++..+.+++..+..++..+++|++|++.+   +..+++    .++..+.    ..+++
T Consensus       362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~----~~~~~  437 (592)
T 3ogk_B          362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL----IGCKK  437 (592)
T ss_dssp             TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH----HHCTT
T ss_pred             cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH----HhCCC
Confidence            7888888777754 5899999999888999999999998899999999973   445665    4666666    46899


Q ss_pred             ccEEecCCCC-CCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh
Q 015585          268 LTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK  346 (404)
Q Consensus       268 L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~  346 (404)
                      |++|++++|. .+++.++..+...+++|+.|++++|. +++.++..+..      ++++|+.|++++|+ ++..++..+.
T Consensus       438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~------~~~~L~~L~l~~n~-l~~~~~~~~~  509 (592)
T 3ogk_B          438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSR------GCPNLQKLEMRGCC-FSERAIAAAV  509 (592)
T ss_dssp             CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHT------CCTTCCEEEEESCC-CBHHHHHHHH
T ss_pred             CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHh------cCcccCeeeccCCC-CcHHHHHHHH
Confidence            9999998764 48888998888889999999999995 99999888887      79999999999986 8887777664


Q ss_pred             cCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEe
Q 015585          347 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCL  385 (404)
Q Consensus       347 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~  385 (404)
                       ..+++|++|++++|.++   ...+..+++.+|.+.+.+
T Consensus       510 -~~l~~L~~L~ls~n~it---~~~~~~l~~~~p~l~~~~  544 (592)
T 3ogk_B          510 -TKLPSLRYLWVQGYRAS---MTGQDLMQMARPYWNIEL  544 (592)
T ss_dssp             -HHCSSCCEEEEESCBCC---TTCTTGGGGCCTTEEEEE
T ss_pred             -HhcCccCeeECcCCcCC---HHHHHHHHHhCCCcEEEE
Confidence             25899999999999984   456677888999988543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=3.1e-26  Score=216.78  Aligned_cols=224  Identities=21%  Similarity=0.260  Sum_probs=102.9

Q ss_pred             HHhCCCCcEEEecCCCCCCHHHHHHHHc----CCCCccEEEccCCCCCCHHHHH----HhhCCCCCCEEeccCCCCCChH
Q 015585          131 LLSCHSLKKFEVRSASFLSDLAFHDLTG----VPCALVEVRLLWCRLITSETVK----KLASSRNLEVLDLGGCKSIADT  202 (404)
Q Consensus       131 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~  202 (404)
                      +..+++|++|+++++. ++......+..    ..++|+.|++++|. +++.++.    .+..+++|++|+++++ .+++.
T Consensus       166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~  242 (461)
T 1z7x_W          166 LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDV  242 (461)
T ss_dssp             HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHH
T ss_pred             HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChH
Confidence            3344555555555553 33333322221    23355555555543 3332221    2224555555555553 44443


Q ss_pred             HHHhhh-----CCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecC
Q 015585          203 CLRSIS-----CLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLG  274 (404)
Q Consensus       203 ~~~~l~-----~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~  274 (404)
                      ++..++     .+++|++|++++|.+++.+...++.   .+++|++|+++++. +++.+...+........++|++|+++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~  321 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVK  321 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcC
Confidence            333221     2455555555555555554333322   35556666665554 44444433331111223456666665


Q ss_pred             CCCCCCHHHHH---HHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh--cCC
Q 015585          275 YMPGISDDGIL---TIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK--RPS  349 (404)
Q Consensus       275 ~~~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~--~~~  349 (404)
                      +| .+++.+..   .....+++|++|++++| .+++.+...++..+..  .+++|++|++++| .+++.+...+.  ...
T Consensus       322 ~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~--~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~  396 (461)
T 1z7x_W          322 SC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQ--PGSVLRVLWLADC-DVSDSSCSSLAATLLA  396 (461)
T ss_dssp             TS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTS--TTCCCCEEECTTS-CCCHHHHHHHHHHHHH
T ss_pred             CC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcC--CCCceEEEECCCC-CCChhhHHHHHHHHHh
Confidence            54 34443222   22233566666666665 3555555555442220  1445666666664 55553333322  012


Q ss_pred             CCcccEEecCCccc
Q 015585          350 FRGLHWLGIGQTRL  363 (404)
Q Consensus       350 ~~~L~~L~l~~~~l  363 (404)
                      +++|++|++++|.+
T Consensus       397 ~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          397 NHSLRELDLSNNCL  410 (461)
T ss_dssp             CCCCCEEECCSSSC
T ss_pred             CCCccEEECCCCCC
Confidence            55666666666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.5e-26  Score=219.00  Aligned_cols=351  Identities=20%  Similarity=0.225  Sum_probs=234.7

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHH---HhhCCCccEEeecCCCCCCcccccccchhhhhhhc-CCC----CCceEEecc
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITI---TASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLG-SCH----HLTGLSLTR   84 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~----~L~~L~l~~   84 (404)
                      +..+++|++|+++++.+.+.....+   ...+++|++|++++|         .+++.++..+. .++    +|++|++++
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n---------~l~~~~~~~l~~~l~~~~~~L~~L~L~~   94 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN---------ELGDVGVHCVLQGLQTPSCKIQKLSLQN   94 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC---------CCHHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC---------cCChHHHHHHHHHHhhCCCceeEEEccC
Confidence            5567788888888777776543333   334678888888875         35555554443 333    688888877


Q ss_pred             cccCCCCCccccChh---hHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHh----CCCCcEEEecCCCCCCHHH---HH
Q 015585           85 CRHNHQGTFKRVNDM---GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLS----CHSLKKFEVRSASFLSDLA---FH  154 (404)
Q Consensus        85 ~~~~~~~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~---l~  154 (404)
                      |.         +.+.   .+......+++|++|+++++ .+++.+...+...    .++|++|+++++. ++...   +.
T Consensus        95 n~---------i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~  163 (461)
T 1z7x_W           95 CC---------LTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLA  163 (461)
T ss_dssp             SC---------CBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred             CC---------CCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHH
Confidence            53         4443   33444456788888888884 5766666655543    3468888888885 44433   34


Q ss_pred             HHHcCCCCccEEEccCCCCCCHHHHHHhh-----CCCCCCEEeccCCCCCChHHH----HhhhCCCCCCEEEccCCccCH
Q 015585          155 DLTGVPCALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADITD  225 (404)
Q Consensus       155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~  225 (404)
                      .....+++|++|+++++. +.+.++..++     ..++|++|++++| .++....    ..+..+++|++|++++|.+++
T Consensus       164 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            444567888888888865 6666665554     2568888888885 5665443    334567888888888888887


Q ss_pred             HHHHHHHh----cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh----CCCCceE
Q 015585          226 SGLSILAQ----GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA----GIGIIDL  297 (404)
Q Consensus       226 ~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L  297 (404)
                      .++..++.    .+++|++|++++|. +++.+...+... -..+++|++|+++++ .+++.+...+...    .++|++|
T Consensus       242 ~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          242 VGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRV-LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH-HHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             HHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHH-HhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceee
Confidence            77666554    46788888888885 777664433310 024678888888886 6777766665543    2588888


Q ss_pred             eecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc---CCCCcccEEecCCccccCCChHHHHHH
Q 015585          298 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASKGNPVITEI  374 (404)
Q Consensus       298 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~  374 (404)
                      ++++|. +++.+...++..+.   .+++|+.|++++| .+++.+...+..   ...++|++|++++|.++..+...+...
T Consensus       319 ~L~~n~-l~~~~~~~l~~~l~---~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          319 WVKSCS-FTAACCSHFSSVLA---QNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             ECTTSC-CBGGGHHHHHHHHH---HCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             EcCCCC-CchHHHHHHHHHHh---hCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            888885 77666555554333   5789999999995 788776665531   236799999999998843222233333


Q ss_pred             HhcCCccE-EEecccccccc
Q 015585          375 HNERPWLT-FCLDGCEIGCH  393 (404)
Q Consensus       375 ~~~~~~l~-l~~~~~~~~~~  393 (404)
                      ...+|.++ +++.+|++...
T Consensus       394 l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          394 LLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHCCCCCEEECCSSSCCHH
T ss_pred             HHhCCCccEEECCCCCCCHH
Confidence            45688888 99999988754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=9.8e-22  Score=178.76  Aligned_cols=308  Identities=19%  Similarity=0.141  Sum_probs=218.9

Q ss_pred             ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCC
Q 015585           11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ   90 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   90 (404)
                      ..+..+++|++|+++++.+...  +.+ ..+++|++|++++|.         ++..  ..+..+++|++|+++++..   
T Consensus        38 ~~~~~l~~L~~L~l~~~~i~~~--~~~-~~~~~L~~L~l~~n~---------i~~~--~~~~~l~~L~~L~L~~n~i---  100 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEKVASI--QGI-EYLTNLEYLNLNGNQ---------ITDI--SPLSNLVKLTNLYIGTNKI---  100 (347)
T ss_dssp             ECHHHHTTCSEEECCSSCCCCC--TTG-GGCTTCCEEECCSSC---------CCCC--GGGTTCTTCCEEECCSSCC---
T ss_pred             ccchhcccccEEEEeCCccccc--hhh-hhcCCccEEEccCCc---------cccc--hhhhcCCcCCEEEccCCcc---
Confidence            3456789999999998777642  233 458999999999973         3322  2278899999999988642   


Q ss_pred             CCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccC
Q 015585           91 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW  170 (404)
Q Consensus        91 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~  170 (404)
                         ..+.      ....+++|++|+++++ .+....  . +..+++|+.|+++++.......  . ...+++|+.|++++
T Consensus       101 ---~~~~------~~~~l~~L~~L~l~~n-~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~  164 (347)
T 4fmz_A          101 ---TDIS------ALQNLTNLRELYLNED-NISDIS--P-LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTE  164 (347)
T ss_dssp             ---CCCG------GGTTCTTCSEEECTTS-CCCCCG--G-GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCS
T ss_pred             ---cCch------HHcCCCcCCEEECcCC-cccCch--h-hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecC
Confidence               2221      1367899999999985 343321  1 5678999999999985444321  1 45789999999998


Q ss_pred             CCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCc
Q 015585          171 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT  250 (404)
Q Consensus       171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~  250 (404)
                      +.....   ..+..+++|++|+++++ .+...  ..+..+++|+.|++.++.+++...   ...+++|++|++++|. ++
T Consensus       165 ~~~~~~---~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~  234 (347)
T 4fmz_A          165 SKVKDV---TPIANLTDLYSLSLNYN-QIEDI--SPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK-IT  234 (347)
T ss_dssp             SCCCCC---GGGGGCTTCSEEECTTS-CCCCC--GGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CC
T ss_pred             CCcCCc---hhhccCCCCCEEEccCC-ccccc--ccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCc-cC
Confidence            763322   22678899999999986 44432  236788999999999997765432   3468999999999887 44


Q ss_pred             HHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEe
Q 015585          251 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLD  330 (404)
Q Consensus       251 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~  330 (404)
                      ....   .    ..+++|++|+++++ .++..  . ....+++|+.|++++|. +++.  ..+.       .+++|+.|+
T Consensus       235 ~~~~---~----~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~l~~n~-l~~~--~~~~-------~l~~L~~L~  293 (347)
T 4fmz_A          235 DLSP---L----ANLSQLTWLEIGTN-QISDI--N-AVKDLTKLKMLNVGSNQ-ISDI--SVLN-------NLSQLNSLF  293 (347)
T ss_dssp             CCGG---G----TTCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSSC-CCCC--GGGG-------GCTTCSEEE
T ss_pred             CCcc---h----hcCCCCCEEECCCC-ccCCC--h-hHhcCCCcCEEEccCCc-cCCC--hhhc-------CCCCCCEEE
Confidence            3322   2    47889999999986 55542  1 12457899999999985 6543  2233       589999999


Q ss_pred             ccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccc
Q 015585          331 LCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG  391 (404)
Q Consensus       331 l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~  391 (404)
                      +++| .++......+.  .+++|++|++++|.++....      ...+|.++ +++.+|++.
T Consensus       294 L~~n-~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          294 LNNN-QLGNEDMEVIG--GLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSS-CCCGGGHHHHH--TCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC---
T ss_pred             CcCC-cCCCcChhHhh--ccccCCEEEccCCccccccC------hhhhhccceeehhhhccc
Confidence            9996 67776666665  48999999999999875422      45788887 999998763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=6.5e-22  Score=179.96  Aligned_cols=287  Identities=17%  Similarity=0.150  Sum_probs=183.7

Q ss_pred             ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCC
Q 015585           11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ   90 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   90 (404)
                      ..+..+++|++|+++++.+.+...   ...+++|++|++++|..         +.  +..+..+++|++|+++++.    
T Consensus        60 ~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i---------~~--~~~~~~l~~L~~L~l~~n~----  121 (347)
T 4fmz_A           60 QGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI---------TD--ISALQNLTNLRELYLNEDN----  121 (347)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC---------CC--CGGGTTCTTCSEEECTTSC----
T ss_pred             hhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcc---------cC--chHHcCCCcCCEEECcCCc----
Confidence            346778888888888777664322   34578888888888632         22  2346778888888887753    


Q ss_pred             CCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccC
Q 015585           91 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW  170 (404)
Q Consensus        91 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~  170 (404)
                        +..+..      ...+++|+.|+++++.......  . +..+++|+.|+++++.......    ...+++|+.|++++
T Consensus       122 --i~~~~~------~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          122 --ISDISP------LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNY  186 (347)
T ss_dssp             --CCCCGG------GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTT
T ss_pred             --ccCchh------hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccC
Confidence              112211      3567888888888764443321  1 4567888888888875322222    34678888888887


Q ss_pred             CCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCc
Q 015585          171 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT  250 (404)
Q Consensus       171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~  250 (404)
                      +.. .+  +..+..+++|+.|+++++ .+.....  +..+++|++|++++|.+++...   ...+++|++|++++|. ++
T Consensus       187 n~l-~~--~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~  256 (347)
T 4fmz_A          187 NQI-ED--ISPLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-IS  256 (347)
T ss_dssp             SCC-CC--CGGGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CC
T ss_pred             Ccc-cc--cccccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cC
Confidence            653 22  122567788888888774 4443222  5677888888888887665332   3457888888888775 44


Q ss_pred             HHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEe
Q 015585          251 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLD  330 (404)
Q Consensus       251 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~  330 (404)
                      ..  ..+     ..+++|++|+++++ .+++..   ....+++|+.|++++|. +++.....+..       +++|+.|+
T Consensus       257 ~~--~~~-----~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~~~l~~-------l~~L~~L~  317 (347)
T 4fmz_A          257 DI--NAV-----KDLTKLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNNQ-LGNEDMEVIGG-------LTNLTTLF  317 (347)
T ss_dssp             CC--GGG-----TTCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSC-CCGGGHHHHHT-------CTTCSEEE
T ss_pred             CC--hhH-----hcCCCcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCCc-CCCcChhHhhc-------cccCCEEE
Confidence            32  122     36778888888886 454421   13457888888888884 66666666664       78888888


Q ss_pred             ccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          331 LCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       331 l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      +++|+ ++....  +.  .+++|++|++++|.++
T Consensus       318 L~~n~-l~~~~~--~~--~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          318 LSQNH-ITDIRP--LA--SLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSS-CCCCGG--GG--GCTTCSEESSSCC---
T ss_pred             ccCCc-cccccC--hh--hhhccceeehhhhccc
Confidence            88863 543222  32  4788888888888763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=2.3e-23  Score=196.67  Aligned_cols=333  Identities=15%  Similarity=0.128  Sum_probs=204.5

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      ++|++|+|+++.+.......+. .+++|++|++++|...        .......+..+++|++|+++++.      +..+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~--------~~i~~~~~~~l~~L~~L~Ls~n~------l~~~   94 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPG--------LVIRNNTFRGLSSLIILKLDYNQ------FLQL   94 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTT--------CEECTTTTTTCTTCCEEECTTCT------TCEE
T ss_pred             CccCEEEecCCccCcCChhHhc-cCccccEEECcCCccc--------ceECcccccccccCCEEeCCCCc------cCcc
Confidence            6789999998888764444443 4889999999987321        11223346778899999998863      2222


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHH-HHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFA-AILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      ....+    ..+++|++|+++++ .++..... ..+..+++|+.|+++++. ++...-..+...+++|+.|+++++. +.
T Consensus        95 ~~~~~----~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~  167 (455)
T 3v47_A           95 ETGAF----NGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VK  167 (455)
T ss_dssp             CTTTT----TTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BS
T ss_pred             Chhhc----cCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-cc
Confidence            22222    46788999999885 44432221 225567889999998885 2221111124467889999998865 32


Q ss_pred             HHHHHHhhC--CCCCCEEeccCCCCCChHH--------HHhhhCCCCCCEEEccCCccCHHHHHHHHhc-----------
Q 015585          176 SETVKKLAS--SRNLEVLDLGGCKSIADTC--------LRSISCLRKLTALNLTGADITDSGLSILAQG-----------  234 (404)
Q Consensus       176 ~~~~~~l~~--~~~L~~L~l~~~~~~~~~~--------~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~-----------  234 (404)
                      ......+..  ..+|+.|+++++ .+....        ...+..+++|++|++++|.+++.....+...           
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             ccChhhhhccccccccccccccC-cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            222222222  256667776664 222211        1112244667777777776665544444321           


Q ss_pred             ---------------------------CCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHH
Q 015585          235 ---------------------------NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI  287 (404)
Q Consensus       235 ---------------------------~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  287 (404)
                                                 .++|+.|+++++. +.......+     ..+++|++|+++++ .++......+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~  319 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVF-----SHFTDLEQLTLAQN-EINKIDDNAF  319 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTT-----TTCTTCCEEECTTS-CCCEECTTTT
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhc-----ccCCCCCEEECCCC-cccccChhHh
Confidence                                       2456666666654 332211111     35778999999886 5543221122


Q ss_pred             HHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCC
Q 015585          288 AAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKG  367 (404)
Q Consensus       288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~  367 (404)
                       ..+++|+.|++++|. ++......+.       .+++|+.|++++| .++......+.  .+++|++|++++|.++...
T Consensus       320 -~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          320 -WGLTHLLKLNLSQNF-LGSIDSRMFE-------NLDKLEVLDLSYN-HIRALGDQSFL--GLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             -TTCTTCCEEECCSSC-CCEECGGGGT-------TCTTCCEEECCSS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCC
T ss_pred             -cCcccCCEEECCCCc-cCCcChhHhc-------CcccCCEEECCCC-cccccChhhcc--ccccccEEECCCCccccCC
Confidence             346899999999885 5533222333       5889999999995 66654444443  4899999999999987653


Q ss_pred             hHHHHHHHhcCCccE-EEeccccccccCC
Q 015585          368 NPVITEIHNERPWLT-FCLDGCEIGCHDG  395 (404)
Q Consensus       368 ~~~~~~~~~~~~~l~-l~~~~~~~~~~~~  395 (404)
                      .+    ....+++++ +++.+|++.|...
T Consensus       388 ~~----~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          388 DG----IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TT----TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             Hh----HhccCCcccEEEccCCCcccCCC
Confidence            32    225678888 9999999999853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=6.4e-20  Score=166.01  Aligned_cols=250  Identities=16%  Similarity=0.225  Sum_probs=187.7

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHH-HhhCCCCC
Q 015585          110 GLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVK-KLASSRNL  188 (404)
Q Consensus       110 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L  188 (404)
                      .++.++++++ .+....+..+..  ++++.|++.++. +.... .. ...+++|++|+++++. +.+..+. .+..+++|
T Consensus        48 ~~~~l~l~~~-~~~~~~~~~~~~--~~l~~L~l~~n~-l~~~~-~~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           48 LWQTLDLTGK-NLHPDVTGRLLS--QGVIAFRCPRSF-MDQPL-AE-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TSSEEECTTC-BCCHHHHHHHHH--TTCSEEECTTCE-ECSCC-CS-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCC
T ss_pred             hheeeccccc-cCCHHHHHhhhh--ccceEEEcCCcc-ccccc-hh-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCC
Confidence            4677777763 455443333221  678888877763 11100 00 2356889999998875 6665443 45578999


Q ss_pred             CEEeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCC-
Q 015585          189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ-  266 (404)
Q Consensus       189 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~-  266 (404)
                      ++|++++| .+++.....++.+++|++|++++| .+++.++..+...+++|++|++++|..+++.++....    ..++ 
T Consensus       121 ~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~l~~  195 (336)
T 2ast_B          121 QNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV----AHVSE  195 (336)
T ss_dssp             SEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH----HHSCT
T ss_pred             CEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH----Hhccc
Confidence            99999886 677777778888899999999998 7888778877778899999999998558877666655    4678 


Q ss_pred             CccEEecCCCC-CCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhh
Q 015585          267 SLTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV  345 (404)
Q Consensus       267 ~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l  345 (404)
                      +|++|+++++. .+++..+......+++|+.|++++|..+++.....+..       +++|+.|++++|..+++.++..+
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-------l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-------LNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-------CTTCCEEECTTCTTCCGGGGGGG
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-------CCCCCEeeCCCCCCCCHHHHHHH
Confidence            99999999976 67877777777789999999999997678777776664       89999999999888888777666


Q ss_pred             hcCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEE
Q 015585          346 KRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFC  384 (404)
Q Consensus       346 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~  384 (404)
                      .  .+++|+.|++++| +   .++.+..+.+.+|.+++.
T Consensus       269 ~--~~~~L~~L~l~~~-i---~~~~~~~l~~~l~~L~l~  301 (336)
T 2ast_B          269 G--EIPTLKTLQVFGI-V---PDGTLQLLKEALPHLQIN  301 (336)
T ss_dssp             G--GCTTCCEEECTTS-S---CTTCHHHHHHHSTTSEES
T ss_pred             h--cCCCCCEEeccCc-c---CHHHHHHHHhhCcceEEe
Confidence            5  4899999999999 4   566777887788888853

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=4.4e-20  Score=167.09  Aligned_cols=218  Identities=21%  Similarity=0.232  Sum_probs=136.7

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhh-hhcCCCCCceEEecccccCCCCCccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQ-SLGSCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      ++++.|+++++.+...... + ..+++|++|++++|         .++...+. .+..+++|++|++++|.         
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~---------~l~~~~~~~~~~~~~~L~~L~L~~~~---------  129 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNS---------VIEVSTLHGILSQCSKLQNLSLEGLR---------  129 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTC---------EECHHHHHHHHTTBCCCSEEECTTCB---------
T ss_pred             ccceEEEcCCccccccchh-h-ccCCCCCEEEccCC---------CcCHHHHHHHHhhCCCCCEEeCcCcc---------
Confidence            6677777776554432211 1 23677777777775         34444333 34567777777776642         


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCC-CccEEEccCCC-C
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPC-ALVEVRLLWCR-L  173 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~-~  173 (404)
                      +.+.....+ ..+++|++|++++|..+++.++..++..+++|++|+++++..++...+......++ +|+.|++++|. .
T Consensus       130 l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~  208 (336)
T 2ast_B          130 LSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  208 (336)
T ss_dssp             CCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             cCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence            444444444 34677777777776567766666667777777777777774466666666666677 77777777764 3


Q ss_pred             CCHHHHHH-hhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585          174 ITSETVKK-LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTD  251 (404)
Q Consensus       174 ~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~  251 (404)
                      +++..+.. +..+++|++|++++|..+++..+..++.+++|++|++++| .+++.++..+. .+++|++|++++|  +++
T Consensus       209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~  285 (336)
T 2ast_B          209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPD  285 (336)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCT
T ss_pred             CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCH
Confidence            55444433 3367777777777764466666666667777777777776 55555554443 3677777777776  666


Q ss_pred             HHHHHHH
Q 015585          252 KGISHLL  258 (404)
Q Consensus       252 ~~~~~l~  258 (404)
                      .++..+.
T Consensus       286 ~~~~~l~  292 (336)
T 2ast_B          286 GTLQLLK  292 (336)
T ss_dssp             TCHHHHH
T ss_pred             HHHHHHH
Confidence            6666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=9.6e-23  Score=199.45  Aligned_cols=261  Identities=14%  Similarity=0.095  Sum_probs=157.6

Q ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH--HHHhhC
Q 015585          107 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET--VKKLAS  184 (404)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~  184 (404)
                      .+++|++|+++++ .+.... ...+..+++|+.|+++++...... .......+++|+.|+++++. +....  ...+..
T Consensus       299 ~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~  374 (606)
T 3t6q_A          299 GLSTLKKLVLSAN-KFENLC-QISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDD-IETSDCCNLQLRN  374 (606)
T ss_dssp             SCTTCCEEECTTC-CCSBGG-GGCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTT
T ss_pred             ccccCCEEECccC-CcCcCc-hhhhhccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCc-cccccCcchhccc
Confidence            4556666666664 222211 112345566666666666321000 00112356677777777654 22211  223456


Q ss_pred             CCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCC
Q 015585          185 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI  264 (404)
Q Consensus       185 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~  264 (404)
                      +++|++|+++++ .+.......+..+++|++|++++|.++..........+++|++|++++|. +.......+     ..
T Consensus       375 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~  447 (606)
T 3t6q_A          375 LSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLF-----DG  447 (606)
T ss_dssp             CTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTT-----TT
T ss_pred             CCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHH-----hC
Confidence            777777777774 44444444556677888888887765533222223356788888888776 433222222     35


Q ss_pred             CCCccEEecCCCCCCCHHHH--HHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHH
Q 015585          265 SQSLTTLDLGYMPGISDDGI--LTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL  342 (404)
Q Consensus       265 ~~~L~~L~l~~~~~l~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~  342 (404)
                      +++|++|+++++ .++...+  ......+++|+.|++++|. ++......+.       .+++|+.|++++| .++....
T Consensus       448 l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~  517 (606)
T 3t6q_A          448 LPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-------SLKMMNHVDLSHN-RLTSSSI  517 (606)
T ss_dssp             CTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCCGGGG
T ss_pred             CCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCc-cCccChhhhc-------cccCCCEEECCCC-ccCcCCh
Confidence            788999999886 4433111  0123457889999999885 5533222233       5889999999995 7777666


Q ss_pred             HhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccCC
Q 015585          343 RWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHDG  395 (404)
Q Consensus       343 ~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~~  395 (404)
                      ..+.  .+++| .|++++|.+++.....+..+    ++++ +++.+|++.|++.
T Consensus       518 ~~l~--~l~~L-~L~L~~N~l~~~~~~~~~~l----~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          518 EALS--HLKGI-YLNLASNHISIILPSLLPIL----SQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GGGT--TCCSC-EEECCSSCCCCCCGGGHHHH----HTSSEEECTTCCEECSGG
T ss_pred             hHhC--ccccc-EEECcCCcccccCHhhcccC----CCCCEEeCCCCCccccCC
Confidence            6665  58899 99999999987655544444    6666 9999999999754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=3.9e-19  Score=163.93  Aligned_cols=253  Identities=17%  Similarity=0.177  Sum_probs=144.5

Q ss_pred             cCCCCcEEEcCCCCCCCHHHHHHH---HHhCCCCcEEEecCCC--CCC---HHH---HHHHHcCCCCccEEEccCCCCCC
Q 015585          107 GCKGLESVRLGGFSKVSDAGFAAI---LLSCHSLKKFEVRSAS--FLS---DLA---FHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~--~~~---~~~---l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      .+++|+.|+++++ .++..+...+   +..+++|+.|+++++.  .++   ...   +......+++|+.|+++++. +.
T Consensus        30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~  107 (386)
T 2ca6_A           30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG  107 (386)
T ss_dssp             HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred             cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence            4455555555553 4444443332   2244556666665542  111   111   12223455666666666654 33


Q ss_pred             HHH----HHHhhCCCCCCEEeccCCCCCChHHHHhhh----CC---------CCCCEEEccCCccCHHHHHHHHh---cC
Q 015585          176 SET----VKKLASSRNLEVLDLGGCKSIADTCLRSIS----CL---------RKLTALNLTGADITDSGLSILAQ---GN  235 (404)
Q Consensus       176 ~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~l~~~~l~~l~~---~~  235 (404)
                      +.+    ...+..+++|++|++++| .++......++    .+         ++|++|++++|.+++.++..++.   .+
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            322    223445677777777764 45544333332    22         67777777777777655554332   56


Q ss_pred             CCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCCHHHHHH
Q 015585          236 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASVEA  312 (404)
Q Consensus       236 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~  312 (404)
                      ++|++|++++|. +++.++..+.......+++|++|+++++ .+++.+...+.   ..+++|+.|++++|. +++.+...
T Consensus       187 ~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~  263 (386)
T 2ca6_A          187 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA  263 (386)
T ss_dssp             TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred             CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH
Confidence            777777777775 6666554443211135677888888775 56655544433   346788888888874 77777666


Q ss_pred             HHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc---CCCCcccEEecCCccccCCC
Q 015585          313 LARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASKG  367 (404)
Q Consensus       313 l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~l~~~~  367 (404)
                      ++..+... .+++|+.|++++| .++..++..+..   ..+++|++|++++|.++...
T Consensus       264 l~~~l~~~-~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKL-ENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTC-SSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhc-cCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            66543200 2678888888884 677654443321   23688888888888886543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.6e-19  Score=166.48  Aligned_cols=256  Identities=19%  Similarity=0.152  Sum_probs=189.7

Q ss_pred             HHHHhCCCCcEEEecCCCCCCHHHHHHH---HcCCCCccEEEccCCC--CCC---HHHHHH----hhCCCCCCEEeccCC
Q 015585          129 AILLSCHSLKKFEVRSASFLSDLAFHDL---TGVPCALVEVRLLWCR--LIT---SETVKK----LASSRNLEVLDLGGC  196 (404)
Q Consensus       129 ~l~~~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~--~~~---~~~~~~----l~~~~~L~~L~l~~~  196 (404)
                      ..+..+++|+.|+++++. ++......+   ...+++|+.|+++++.  .+.   ..++..    +..+++|++|+++++
T Consensus        26 ~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             HHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            346678999999999995 666554443   4578999999999873  222   234433    347899999999995


Q ss_pred             CCCChHH----HHhhhCCCCCCEEEccCCccCHHHHHHHHhc---C---------CCcCEEeecCCCCCcHHHHHHHHhh
Q 015585          197 KSIADTC----LRSISCLRKLTALNLTGADITDSGLSILAQG---N---------LPIMNLCLRGCKRVTDKGISHLLCV  260 (404)
Q Consensus       197 ~~~~~~~----~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~---~---------~~L~~L~l~~~~~l~~~~~~~l~~~  260 (404)
                       .++..+    ...+..+++|++|++++|.+++.+...++..   +         ++|++|++++|. +++.++..+.. 
T Consensus       105 -~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~-  181 (386)
T 2ca6_A          105 -AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK-  181 (386)
T ss_dssp             -CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH-
T ss_pred             -cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH-
Confidence             676643    3355789999999999999987766655542   3         899999999987 77555553220 


Q ss_pred             cCCCCCCccEEecCCCCCCCHHHHHHHHH----hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC
Q 015585          261 GGTISQSLTTLDLGYMPGISDDGILTIAA----AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG  336 (404)
Q Consensus       261 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~  336 (404)
                      .-..+++|++|+++++ .+++.++..+..    .+++|+.|++++|. +++.+...++..+.   .+++|+.|++++| .
T Consensus       182 ~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~---~~~~L~~L~L~~n-~  255 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALK---SWPNLRELGLNDC-L  255 (386)
T ss_dssp             HHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGG---GCTTCCEEECTTC-C
T ss_pred             HHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHc---cCCCcCEEECCCC-C
Confidence            0035789999999997 889887666554    68999999999995 99888877776655   7899999999996 6


Q ss_pred             CCHHHHHhhhc----CCCCcccEEecCCccccCCChHHH-HHHHhcCCccE-EEeccccccccC
Q 015585          337 LSVDSLRWVKR----PSFRGLHWLGIGQTRLASKGNPVI-TEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       337 i~~~~~~~l~~----~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      ++..+...+..    ..+++|++|++++|.++..+...+ ..+...+|+++ +++.+|++....
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            88876554432    238999999999999853212222 23335679998 999999988654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=1.7e-20  Score=177.31  Aligned_cols=309  Identities=19%  Similarity=0.240  Sum_probs=177.4

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      .+..+++|++|+++++.+.....   ...+++|++|++++|..         ...  ..++.+++|++|+++++..    
T Consensus        63 ~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l---------~~~--~~~~~l~~L~~L~L~~n~l----  124 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQI---------ADI--TPLANLTNLTGLTLFNNQI----  124 (466)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC---------CCC--GGGTTCTTCCEEECCSSCC----
T ss_pred             chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCcc---------ccC--hhhcCCCCCCEEECCCCCC----
Confidence            46677888888888776664332   33477888888877632         211  1255666666776666421    


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHH-------------------HHHHHHhCCCCcEEEecCCCCCCHHH
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAG-------------------FAAILLSCHSLKKFEVRSASFLSDLA  152 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-------------------~~~l~~~~~~L~~L~l~~~~~~~~~~  152 (404)
                        ..+..      ...+++|++|+++++. +....                   +.. +..+++|+.|+++++.. +.. 
T Consensus       125 --~~~~~------~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l-~~~-  192 (466)
T 1o6v_A          125 --TDIDP------LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKV-SDI-  192 (466)
T ss_dssp             --CCCGG------GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCC-CCC-
T ss_pred             --CCChH------HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCcC-CCC-
Confidence              11111      2345555555555431 11100                   001 33445666666665542 111 


Q ss_pred             HHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHH
Q 015585          153 FHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA  232 (404)
Q Consensus       153 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~  232 (404)
                       . ....+++|+.|+++++.. ..  +..+..+++|++|+++++ .+..  +..+..+++|+.|++++|.+++...   .
T Consensus       193 -~-~l~~l~~L~~L~l~~n~l-~~--~~~~~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~l~~n~l~~~~~---~  261 (466)
T 1o6v_A          193 -S-VLAKLTNLESLIATNNQI-SD--ITPLGILTNLDELSLNGN-QLKD--IGTLASLTNLTDLDLANNQISNLAP---L  261 (466)
T ss_dssp             -G-GGGGCTTCSEEECCSSCC-CC--CGGGGGCTTCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSSCCCCCGG---G
T ss_pred             -h-hhccCCCCCEEEecCCcc-cc--cccccccCCCCEEECCCC-Cccc--chhhhcCCCCCEEECCCCccccchh---h
Confidence             1 123556666666666542 21  111445666777776664 3332  2345566777777777776554321   3


Q ss_pred             hcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHH
Q 015585          233 QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEA  312 (404)
Q Consensus       233 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~  312 (404)
                      ..+++|++|++++|. +.....   .    ..+++|+.|+++++ .++....   ...+++|+.|++++|. +++...  
T Consensus       262 ~~l~~L~~L~l~~n~-l~~~~~---~----~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~--  326 (466)
T 1o6v_A          262 SGLTKLTELKLGANQ-ISNISP---L----AGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP--  326 (466)
T ss_dssp             TTCTTCSEEECCSSC-CCCCGG---G----TTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG--
T ss_pred             hcCCCCCEEECCCCc-cCcccc---c----cCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh--
Confidence            356777777777765 333211   2    35678888888875 4443211   2457888888888885 543221  


Q ss_pred             HHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccc
Q 015585          313 LARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG  391 (404)
Q Consensus       313 l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~  391 (404)
                      +.       .+++|+.|++++| .++..  ..+.  .+++|+.|++++|.+++...      ...+|.++ +++.+|.+.
T Consensus       327 ~~-------~l~~L~~L~l~~n-~l~~~--~~l~--~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          327 VS-------SLTKLQRLFFYNN-KVSDV--SSLA--NLTNINWLSAGHNQISDLTP------LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             GG-------GCTTCCEEECCSS-CCCCC--GGGT--TCTTCCEEECCSSCCCBCGG------GTTCTTCCEEECCCEEEE
T ss_pred             hc-------cCccCCEeECCCC-ccCCc--hhhc--cCCCCCEEeCCCCccCccch------hhcCCCCCEEeccCCccc
Confidence            22       4788889988886 55543  2333  58899999999998865421      36778887 999888887


Q ss_pred             ccC
Q 015585          392 CHD  394 (404)
Q Consensus       392 ~~~  394 (404)
                      ..+
T Consensus       389 ~~p  391 (466)
T 1o6v_A          389 NAP  391 (466)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=8.7e-23  Score=199.75  Aligned_cols=139  Identities=15%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHH
Q 015585          234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL  313 (404)
Q Consensus       234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l  313 (404)
                      .+++|++|++++|. +.......+     ..+++|++|+++++ .++..........+++|+.|++++|. ++......+
T Consensus       422 ~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~  493 (606)
T 3vq2_A          422 SLEKLLYLDISYTN-TKIDFDGIF-----LGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVF  493 (606)
T ss_dssp             TCTTCCEEECTTSC-CEECCTTTT-----TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred             ccccCCEEECcCCC-CCccchhhh-----cCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhh
Confidence            34556666665554 222111111     24567777777765 33321111112346788888888874 543222222


Q ss_pred             HhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCC-ccE-EEecccccc
Q 015585          314 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERP-WLT-FCLDGCEIG  391 (404)
Q Consensus       314 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~l~-l~~~~~~~~  391 (404)
                      .       .+++|+.|++++| .++......+.  .+++|++|++++|.++.....    + ...| +++ +++.+|++.
T Consensus       494 ~-------~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~p~~----~-~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          494 D-------TLHRLQLLNMSHN-NLLFLDSSHYN--QLYSLSTLDCSFNRIETSKGI----L-QHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             T-------TCTTCCEEECCSS-CCSCEEGGGTT--TCTTCCEEECTTSCCCCEESC----G-GGSCTTCCEEECCSCCCC
T ss_pred             c-------ccccCCEEECCCC-cCCCcCHHHcc--CCCcCCEEECCCCcCcccCHh----H-hhhcccCcEEEccCCCcc
Confidence            2       5888999999885 66654444443  588999999999998754322    3 4555 577 999999999


Q ss_pred             ccCC
Q 015585          392 CHDG  395 (404)
Q Consensus       392 ~~~~  395 (404)
                      |+..
T Consensus       559 c~c~  562 (606)
T 3vq2_A          559 CICE  562 (606)
T ss_dssp             CSST
T ss_pred             cCCc
Confidence            9743

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=1.8e-21  Score=183.71  Aligned_cols=330  Identities=11%  Similarity=0.035  Sum_probs=202.5

Q ss_pred             ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCC
Q 015585           11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ   90 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   90 (404)
                      ..+..+++|++|+++++.+...........+++|++|++++|.         ++......++.+++|++|+++++.    
T Consensus        48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~L~~n~----  114 (455)
T 3v47_A           48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ---------FLQLETGAFNGLANLEVLTLTQCN----  114 (455)
T ss_dssp             TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT---------TCEECTTTTTTCTTCCEEECTTSC----
T ss_pred             hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc---------cCccChhhccCcccCCEEeCCCCC----
Confidence            3478889999999998766532222222348999999999973         444344557788899999998863    


Q ss_pred             CCccccChhhHHH-HHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCC--CHHHHHHH-----------
Q 015585           91 GTFKRVNDMGMFL-LSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFL--SDLAFHDL-----------  156 (404)
Q Consensus        91 ~~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~l~~~-----------  156 (404)
                           +....+.. ....+++|++|+++++ .++......++..+++|+.|+++++...  ....+..+           
T Consensus       115 -----l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          115 -----LDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             -----CBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred             -----CCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence                 33222211 1356788999998885 3433222223566788899988887421  11111111           


Q ss_pred             -------------------HcCCCCccEEEccCCCCCCHHHHHHhh---CCCCCCEEeccCCCCCCh---------HHHH
Q 015585          157 -------------------TGVPCALVEVRLLWCRLITSETVKKLA---SSRNLEVLDLGGCKSIAD---------TCLR  205 (404)
Q Consensus       157 -------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~---------~~~~  205 (404)
                                         ....++|+.|+++++. +.......+.   ..++|+.|+++++.....         ....
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence                               1123567777777654 4443333333   346677777765421110         0000


Q ss_pred             hhh--CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHH
Q 015585          206 SIS--CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDG  283 (404)
Q Consensus       206 ~l~--~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~  283 (404)
                      .+.  ..++|+.|++++|.++...... ...+++|++|++++|. +.......+     ..+++|++|+++++ .++...
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~  339 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNE-INKIDDNAF-----WGLTHLLKLNLSQN-FLGSID  339 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECCSS-CCCEEC
T ss_pred             ccccccccCceEEEecCccccccchhh-cccCCCCCEEECCCCc-ccccChhHh-----cCcccCCEEECCCC-ccCCcC
Confidence            111  2478999999999876532222 2357899999999987 554322222     36789999999996 554432


Q ss_pred             HHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccc
Q 015585          284 ILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRL  363 (404)
Q Consensus       284 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l  363 (404)
                      ... ...+++|+.|++++|. ++......+.       .+++|+.|++++| .++......+.  .+++|+.|++++|++
T Consensus       340 ~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          340 SRM-FENLDKLEVLDLSYNH-IRALGDQSFL-------GLPNLKELALDTN-QLKSVPDGIFD--RLTSLQKIWLHTNPW  407 (455)
T ss_dssp             GGG-GTTCTTCCEEECCSSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCB
T ss_pred             hhH-hcCcccCCEEECCCCc-ccccChhhcc-------ccccccEEECCCC-ccccCCHhHhc--cCCcccEEEccCCCc
Confidence            222 2357999999999995 6543222333       5899999999995 66654333333  589999999999999


Q ss_pred             cCCC--hHHHHHHHhcCCc
Q 015585          364 ASKG--NPVITEIHNERPW  380 (404)
Q Consensus       364 ~~~~--~~~~~~~~~~~~~  380 (404)
                      +...  ...+..+.+..+.
T Consensus       408 ~~~~~~~~~l~~~l~~~~~  426 (455)
T 3v47_A          408 DCSCPRIDYLSRWLNKNSQ  426 (455)
T ss_dssp             CCCTTTTHHHHHHHHHTTT
T ss_pred             ccCCCcchHHHHHHHhCcc
Confidence            7642  2344444443333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=3.3e-21  Score=185.00  Aligned_cols=106  Identities=13%  Similarity=0.080  Sum_probs=63.7

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      ++|++|+++++.+.......+. .+++|++|++++|.         ++......++.+++|++|+++++.      +..+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~l   84 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDIL-SLSKLRILIISHNR---------IQYLDISVFKFNQELEYLDLSHNK------LVKI   84 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSC---------CCEEEGGGGTTCTTCCEEECCSSC------CCEE
T ss_pred             ccccEEECCCCcccccChhhcc-ccccccEEecCCCc---------cCCcChHHhhcccCCCEEecCCCc------eeec
Confidence            7888899988777755444454 48888999888863         443334456777888888887753      1222


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS  146 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  146 (404)
                      ...       .+++|++|+++++ .++...+...+..+++|++|+++++.
T Consensus        85 p~~-------~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           85 SCH-------PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             ECC-------CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             Ccc-------ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcc
Confidence            211       4566777777664 22221111124455666666666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.82  E-value=1.7e-22  Score=202.44  Aligned_cols=336  Identities=18%  Similarity=0.155  Sum_probs=174.1

Q ss_pred             cccCCCCCcEEeccCCCCChHHHH--HHHhhCCCccEEeecCCCCCCcccccccchhhhhhh-cCCCCCceEEecccccC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLI--TITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHN   88 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~--~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~   88 (404)
                      .+..+++|++|+|+++.+....+.  .+. .+++|++|++++|.         +.......+ ..+++|++|+++++.  
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~---------l~~~~~~~~~~~l~~L~~L~Ls~n~--  162 (768)
T 3rgz_A           95 GFKCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNT---------LDFPGKVSGGLKLNSLEVLDLSANS--  162 (768)
T ss_dssp             CCCCCTTCCEEECCSSEEEEEGGGGGGGG-GCTTCCEEECCSSE---------EECCSSCCSCCCCTTCSEEECCSSC--
T ss_pred             hhccCCCCCEEECCCCcCCCcCCChHHHh-CCCCCCEEECcCCc---------cCCcCCHHHhccCCCCCEEECCCCc--
Confidence            577888999999998777644333  443 48899999998862         222222222 577888888887753  


Q ss_pred             CCCCccccChhhHHH--HHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEE
Q 015585           89 HQGTFKRVNDMGMFL--LSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEV  166 (404)
Q Consensus        89 ~~~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L  166 (404)
                             +.......  ....+++|++|+++++.-.....    ...+++|++|+++++......  .. ...+++|+.|
T Consensus       163 -------l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~--~~-l~~l~~L~~L  228 (768)
T 3rgz_A          163 -------ISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGI--PF-LGDCSALQHL  228 (768)
T ss_dssp             -------CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCC--CB-CTTCCSCCEE
T ss_pred             -------cCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCC--cc-cccCCCCCEE
Confidence                   22222211  13567788888887753211111    145678888888777532111  11 3466778888


Q ss_pred             EccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCC
Q 015585          167 RLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGC  246 (404)
Q Consensus       167 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~  246 (404)
                      +++++. +.......+..+++|++|++++| .+..... . ..+++|++|++++|.+++.....+...+++|++|++++|
T Consensus       229 ~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~-~-~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n  304 (768)
T 3rgz_A          229 DISGNK-LSGDFSRAISTCTELKLLNISSN-QFVGPIP-P-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN  304 (768)
T ss_dssp             ECCSSC-CCSCHHHHTTTCSSCCEEECCSS-CCEESCC-C-CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred             ECcCCc-CCCcccHHHhcCCCCCEEECCCC-cccCccC-c-cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence            887765 44444556667777888887775 3322111 1 145566666666654432211112222355555555555


Q ss_pred             CCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCH---HHHHHHHhhC------
Q 015585          247 KRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD---ASVEALARKQ------  317 (404)
Q Consensus       247 ~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~------  317 (404)
                      . +.......+     ..+++|++|+++++ .++..........+++|++|++++|. ++.   ..+..+...+      
T Consensus       305 ~-l~~~~p~~~-----~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls  376 (768)
T 3rgz_A          305 H-FYGAVPPFF-----GSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLS  376 (768)
T ss_dssp             E-EEECCCGGG-----GGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECC
T ss_pred             c-CCCccchHH-----hcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEcc
Confidence            4 221111111     13445555555554 22100000111234555555555543 211   1111111000      


Q ss_pred             ---------CCcc--cCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEe
Q 015585          318 ---------PDQE--KSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCL  385 (404)
Q Consensus       318 ---------~~~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~  385 (404)
                               +...  .+++|+.|++++| .++......+.  .+++|++|++++|.+++.....    ...+++++ +++
T Consensus       377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L  449 (768)
T 3rgz_A          377 SNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKL  449 (768)
T ss_dssp             SSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGG--GCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEEC
T ss_pred             CCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHHh--cCCCCCEEECcCCcccCcccHH----HhcCCCCCEEEC
Confidence                     0000  1456777777774 33322222332  3778888888888876432222    24567777 888


Q ss_pred             ccccccc
Q 015585          386 DGCEIGC  392 (404)
Q Consensus       386 ~~~~~~~  392 (404)
                      .+|.+..
T Consensus       450 ~~n~l~~  456 (768)
T 3rgz_A          450 WLNMLEG  456 (768)
T ss_dssp             CSSCCCS
T ss_pred             CCCcccC
Confidence            8887763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=2.8e-20  Score=179.84  Aligned_cols=59  Identities=20%  Similarity=0.098  Sum_probs=30.0

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC   85 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   85 (404)
                      ++|++|+++++.++......+ ..+++|++|++++|.         ++......++.+++|++|+++++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~Ls~n   84 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSR---------INTIEGDAFYSLGSLEHLDLSDN   84 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTT-SSCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCccEEECcCCccCccChhhh-hcCCcccEEECCCCC---------cCccChhhccccccCCEEECCCC
Confidence            456666666655553322223 235666666666652         22222233455556666666553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.81  E-value=8.5e-22  Score=191.35  Aligned_cols=164  Identities=16%  Similarity=0.090  Sum_probs=96.5

Q ss_pred             hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHH
Q 015585          208 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI  287 (404)
Q Consensus       208 ~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  287 (404)
                      ..+++|++|++++|.++.....  ...+++|++|++++|. +.........    ..+++|++|+++++ .+..... ..
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~----~~l~~L~~L~l~~n-~l~~~~~-~~  440 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVF----LSLRNLIYLDISHT-HTRVAFN-GI  440 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTT----TTCTTCCEEECTTS-CCEECCT-TT
T ss_pred             cccCccCEEECCCCcccccccc--ccccCCCCEEEccCCc-cccccchhhh----hcCCCCCEEeCcCC-cccccch-hh
Confidence            3445555555555433221100  1235556666665554 2221110111    35678888888876 3322111 11


Q ss_pred             HHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCC
Q 015585          288 AAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKG  367 (404)
Q Consensus       288 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~  367 (404)
                      ...+++|+.|++++|. +++..   +...+.   .+++|+.|++++| .++......+.  .+++|++|++++|.++...
T Consensus       441 ~~~l~~L~~L~l~~n~-l~~~~---~p~~~~---~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          441 FNGLSSLEVLKMAGNS-FQENF---LPDIFT---ELRNLTFLDLSQC-QLEQLSPTAFN--SLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             TTTCTTCCEEECTTCE-EGGGE---ECSCCT---TCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCC
T ss_pred             hhcCCcCcEEECcCCc-Ccccc---chhhhh---cccCCCEEECCCC-ccccCChhhhh--cccCCCEEeCCCCcCCCCC
Confidence            2356889999998885 43211   111122   6899999999996 66654444443  5899999999999987653


Q ss_pred             hHHHHHHHhcCCccE-EEeccccccccC
Q 015585          368 NPVITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       368 ~~~~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      ..    ....+++++ +++.+|++.|..
T Consensus       511 ~~----~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          511 DG----IFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             TT----TTTTCTTCCEEECCSSCBCCCT
T ss_pred             HH----HhhcccCCcEEEecCCcccCCC
Confidence            32    225678888 999999999984

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=8.5e-22  Score=192.74  Aligned_cols=41  Identities=15%  Similarity=0.089  Sum_probs=26.4

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRP   53 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~   53 (404)
                      .+..+++|++|+|+++.+.......+. .+++|++|++++|.
T Consensus        76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~  116 (606)
T 3t6q_A           76 TFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTG  116 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTSC
T ss_pred             hccCccccCeeeCCCCcccccChhhhc-ccccccEeeccccC
Confidence            466777888888877766543333333 36777777777763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.80  E-value=1.8e-21  Score=184.80  Aligned_cols=302  Identities=20%  Similarity=0.148  Sum_probs=146.8

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      ++++.|+|+++.+.......+. .+++|++|++++|         .++......+..+++|++|+++++.      +..+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~------l~~~   95 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNEN---------IVSAVEPGAFNNLFNLRTLGLRSNR------LKLI   95 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CCSC
T ss_pred             CCCcEEECCCCccceECHhHcc-CCCCCCEEECCCC---------ccCEeChhhhhCCccCCEEECCCCc------CCcc
Confidence            5677777777666643333333 3677777777775         2333333445667777777776642      1222


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      ....+    ..+++|++|+++++ .+.... ...+..+++|+.|+++++. +.... ...+..+++|+.|+++++. +..
T Consensus        96 ~~~~~----~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~  166 (477)
T 2id5_A           96 PLGVF----TGLSNLTKLDISEN-KIVILL-DYMFQDLYNLKSLEVGDND-LVYIS-HRAFSGLNSLEQLTLEKCN-LTS  166 (477)
T ss_dssp             CTTSS----TTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEEECCTT-CCEEC-TTSSTTCTTCCEEEEESCC-CSS
T ss_pred             Ccccc----cCCCCCCEEECCCC-ccccCC-hhHccccccCCEEECCCCc-cceeC-hhhccCCCCCCEEECCCCc-Ccc
Confidence            22111    34567777777764 222110 1113455677777776663 21110 0112245666666666653 332


Q ss_pred             HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHH
Q 015585          177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH  256 (404)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~  256 (404)
                      .....+..+++|+.|+++++ .+.......+..+++|+.|+++++........... ...+|++|++++|. ++......
T Consensus       167 ~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~  243 (477)
T 2id5_A          167 IPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCN-LTAVPYLA  243 (477)
T ss_dssp             CCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSC-CCSCCHHH
T ss_pred             cChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCc-ccccCHHH
Confidence            22334456666666666663 44433333445566666666666532211111111 12356666666554 33322222


Q ss_pred             HHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC
Q 015585          257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG  336 (404)
Q Consensus       257 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~  336 (404)
                      +     ..+++|++|+++++ .++......+ ..+++|+.|++++|. ++......+.       .+++|+.|++++| .
T Consensus       244 ~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~  307 (477)
T 2id5_A          244 V-----RHLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGGQ-LAVVEPYAFR-------GLNYLRVLNVSGN-Q  307 (477)
T ss_dssp             H-----TTCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSSC-CSEECTTTBT-------TCTTCCEEECCSS-C
T ss_pred             h-----cCccccCeeECCCC-cCCccChhhc-cccccCCEEECCCCc-cceECHHHhc-------CcccCCEEECCCC-c
Confidence            2     24556666666654 3332111111 234566666666653 3322111122       3566666666663 4


Q ss_pred             CCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          337 LSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       337 i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      ++......+.  .+++|+.|++++|++.
T Consensus       308 l~~~~~~~~~--~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          308 LTTLEESVFH--SVGNLETLILDSNPLA  333 (477)
T ss_dssp             CSCCCGGGBS--CGGGCCEEECCSSCEE
T ss_pred             CceeCHhHcC--CCcccCEEEccCCCcc
Confidence            4432222222  3556666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.80  E-value=2e-21  Score=184.46  Aligned_cols=322  Identities=15%  Similarity=0.108  Sum_probs=218.2

Q ss_pred             cEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChh
Q 015585           20 RSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDM   99 (404)
Q Consensus        20 ~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~   99 (404)
                      +.++.+++.+... +..   -.+++++|++++|         .++......+..+++|++|+++++.      +..+...
T Consensus        14 ~~v~c~~~~l~~i-p~~---~~~~l~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~------i~~~~~~   74 (477)
T 2id5_A           14 RAVLCHRKRFVAV-PEG---IPTETRLLDLGKN---------RIKTLNQDEFASFPHLEELELNENI------VSAVEPG   74 (477)
T ss_dssp             TEEECCSCCCSSC-CSC---CCTTCSEEECCSS---------CCCEECTTTTTTCTTCCEEECTTSC------CCEECTT
T ss_pred             CEEEeCCCCcCcC-CCC---CCCCCcEEECCCC---------ccceECHhHccCCCCCCEEECCCCc------cCEeChh
Confidence            4566665544421 111   1358999999997         3444444567889999999998863      2223222


Q ss_pred             hHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHH
Q 015585          100 GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETV  179 (404)
Q Consensus       100 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  179 (404)
                      .+    ..+++|+.|+++++ .++... ...+..+++|+.|+++++.. ... .......+++|+.|+++++. +.....
T Consensus        75 ~~----~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~  145 (477)
T 2id5_A           75 AF----NNLFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENKI-VIL-LDYMFQDLYNLKSLEVGDND-LVYISH  145 (477)
T ss_dssp             TT----TTCTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSCC-CEE-CTTTTTTCTTCCEEEECCTT-CCEECT
T ss_pred             hh----hCCccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCcc-ccC-ChhHccccccCCEEECCCCc-cceeCh
Confidence            22    56899999999985 343221 11245679999999999853 211 11223578999999999875 433333


Q ss_pred             HHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHh
Q 015585          180 KKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLC  259 (404)
Q Consensus       180 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  259 (404)
                      ..+..+++|++|+++++ .+.......+..+++|+.|++.++.+....... ...+++|++|++++|..+.... .... 
T Consensus       146 ~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~-  221 (477)
T 2id5_A          146 RAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMT-PNCL-  221 (477)
T ss_dssp             TSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEEC-TTTT-
T ss_pred             hhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCccccccC-cccc-
Confidence            34668899999999995 666555566788999999999998776432211 2257899999999887443321 1111 


Q ss_pred             hcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCH
Q 015585          260 VGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV  339 (404)
Q Consensus       260 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~  339 (404)
                          ...+|++|+++++ .++...... ...+++|+.|++++|. ++......+.       .+++|+.|+++++ .++.
T Consensus       222 ----~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~  286 (477)
T 2id5_A          222 ----YGLNLTSLSITHC-NLTAVPYLA-VRHLVYLRFLNLSYNP-ISTIEGSMLH-------ELLRLQEIQLVGG-QLAV  286 (477)
T ss_dssp             ----TTCCCSEEEEESS-CCCSCCHHH-HTTCTTCCEEECCSSC-CCEECTTSCT-------TCTTCCEEECCSS-CCSE
T ss_pred             ----cCccccEEECcCC-cccccCHHH-hcCccccCeeECCCCc-CCccChhhcc-------ccccCCEEECCCC-ccce
Confidence                3458999999996 565433222 3468999999999995 5533222222       5899999999995 6665


Q ss_pred             HHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585          340 DSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       340 ~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      .....+.  .+++|+.|++++|.++......    ...+++++ +++.+|++.|+.
T Consensus       287 ~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          287 VEPYAFR--GLNYLRVLNVSGNQLTTLEESV----FHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             ECTTTBT--TCTTCCEEECCSSCCSCCCGGG----BSCGGGCCEEECCSSCEECSG
T ss_pred             ECHHHhc--CcccCCEEECCCCcCceeCHhH----cCCCcccCEEEccCCCccCcc
Confidence            4444443  5899999999999997654332    24568888 999999999884

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.80  E-value=5.4e-21  Score=189.58  Aligned_cols=338  Identities=16%  Similarity=0.062  Sum_probs=179.2

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC---Cc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG---TF   93 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~   93 (404)
                      ++|++|+++++.+.......+ ..+++|++|++++|.         +.......+..+++|+.|+++++......   .+
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l  317 (680)
T 1ziw_A          248 TNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNN---------IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL  317 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCC---------BSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred             CCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCc---------cCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence            348899998877765433333 347889999988863         33222334455666666666543210000   00


Q ss_pred             cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecC----------------------------C
Q 015585           94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRS----------------------------A  145 (404)
Q Consensus        94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~----------------------------~  145 (404)
                      ..+.+..    ...+++|++|+++++ .++... ...+..+++|+.|++++                            +
T Consensus       318 p~i~~~~----~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          318 PKIDDFS----FQWLKCLEHLNMEDN-DIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             CEECTTT----TTTCTTCCEEECCSC-CBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             cccChhh----cccCCCCCEEECCCC-ccCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence            0011111    123455555555553 221110 01123345555555544                            3


Q ss_pred             CCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCH
Q 015585          146 SFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITD  225 (404)
Q Consensus       146 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  225 (404)
                      . ++... ......+++|+.|+++++..........+..+++|++|+++++ .+.......+..+++|+.|++.++.+..
T Consensus       392 ~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~  468 (680)
T 1ziw_A          392 K-ISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKN  468 (680)
T ss_dssp             C-CCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred             C-CCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhccccccc
Confidence            2 11100 0112245566666666543111000122345566666666653 3333333344556677777777665432


Q ss_pred             HH-HHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHH-------HHHHhCCCCceE
Q 015585          226 SG-LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL-------TIAAAGIGIIDL  297 (404)
Q Consensus       226 ~~-l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~l~~~~~~L~~L  297 (404)
                      .+ .......+++|+.|+++++. ++......+     ..+++|++|+++++ .++.....       .....+++|+.|
T Consensus       469 ~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L  541 (680)
T 1ziw_A          469 VDSSPSPFQPLRNLTILDLSNNN-IANINDDML-----EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHIL  541 (680)
T ss_dssp             TTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred             cccCCcccccCCCCCEEECCCCC-CCcCChhhh-----ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEE
Confidence            11 11112356778888887775 432211111     35678888888885 44321100       012356888999


Q ss_pred             eecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhc
Q 015585          298 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNE  377 (404)
Q Consensus       298 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  377 (404)
                      ++++|. ++......+.       ++++|+.|++++ +.++......+.  .+++|+.|++++|.++......+.   ..
T Consensus       542 ~L~~N~-l~~i~~~~~~-------~l~~L~~L~Ls~-N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~---~~  607 (680)
T 1ziw_A          542 NLESNG-FDEIPVEVFK-------DLFELKIIDLGL-NNLNTLPASVFN--NQVSLKSLNLQKNLITSVEKKVFG---PA  607 (680)
T ss_dssp             ECCSSC-CCCCCTTTTT-------TCTTCCEEECCS-SCCCCCCTTTTT--TCTTCCEEECTTSCCCBCCHHHHH---HH
T ss_pred             ECCCCC-CCCCCHHHcc-------cccCcceeECCC-CCCCcCCHhHhC--CCCCCCEEECCCCcCCccChhHhc---cc
Confidence            998884 5421111122       588999999988 466643333332  488999999999999876544433   24


Q ss_pred             CCccE-EEeccccccccC
Q 015585          378 RPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       378 ~~~l~-l~~~~~~~~~~~  394 (404)
                      +++++ +++.+|++.|++
T Consensus       608 ~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          608 FRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             HTTCSEEECTTCCCCBCC
T ss_pred             ccccCEEEccCCCcccCC
Confidence            57776 999999999985

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=3.6e-22  Score=200.07  Aligned_cols=235  Identities=17%  Similarity=0.144  Sum_probs=129.3

Q ss_pred             HhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCC-CCCEEeccCCCCCChHHHHhhhC-
Q 015585          132 LSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR-NLEVLDLGGCKSIADTCLRSISC-  209 (404)
Q Consensus       132 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~-  209 (404)
                      ..+++|+.|+++++....... ......+++|+.|+++++. +.......+..++ +|++|+++++ .+.......+.. 
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~  391 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQN  391 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCS
T ss_pred             hcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhc
Confidence            445566666666553110000 0112345566666666543 1111111122233 5666666553 333322333332 


Q ss_pred             -CCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH
Q 015585          210 -LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA  288 (404)
Q Consensus       210 -~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  288 (404)
                       +++|++|++.+|.+++.....+ ..+++|++|++++|. +.......+     ..+++|++|+++++ .++......+ 
T Consensus       392 ~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~-l~~~~p~~l-----~~l~~L~~L~L~~n-~l~~~~p~~~-  462 (768)
T 3rgz_A          392 PKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNY-LSGTIPSSL-----GSLSKLRDLKLWLN-MLEGEIPQEL-  462 (768)
T ss_dssp             TTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSE-EESCCCGGG-----GGCTTCCEEECCSS-CCCSCCCGGG-
T ss_pred             ccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCc-ccCcccHHH-----hcCCCCCEEECCCC-cccCcCCHHH-
Confidence             5678888887776553222222 257788888888775 332211222     25678888888876 4432111112 


Q ss_pred             HhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCCh
Q 015585          289 AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGN  368 (404)
Q Consensus       289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~  368 (404)
                      ..+++|+.|++++|. ++......+.       .+++|+.|++++| .++......+.  .+++|++|++++|.+++...
T Consensus       463 ~~l~~L~~L~L~~N~-l~~~~p~~l~-------~l~~L~~L~L~~N-~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p  531 (768)
T 3rgz_A          463 MYVKTLETLILDFND-LTGEIPSGLS-------NCTNLNWISLSNN-RLTGEIPKWIG--RLENLAILKLSNNSFSGNIP  531 (768)
T ss_dssp             GGCTTCCEEECCSSC-CCSCCCGGGG-------GCTTCCEEECCSS-CCCSCCCGGGG--GCTTCCEEECCSSCCEEECC
T ss_pred             cCCCCceEEEecCCc-ccCcCCHHHh-------cCCCCCEEEccCC-ccCCcCChHHh--cCCCCCEEECCCCcccCcCC
Confidence            356888888888885 4432222233       5888999999885 55543334444  37889999999988864322


Q ss_pred             HHHHHHHhcCCccE-EEecccccccc
Q 015585          369 PVITEIHNERPWLT-FCLDGCEIGCH  393 (404)
Q Consensus       369 ~~~~~~~~~~~~l~-l~~~~~~~~~~  393 (404)
                      .   . ...+++++ +++.+|.+.+.
T Consensus       532 ~---~-l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          532 A---E-LGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             G---G-GGGCTTCCEEECCSSEEESB
T ss_pred             H---H-HcCCCCCCEEECCCCccCCc
Confidence            1   2 24678887 89988888754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=2.5e-20  Score=172.19  Aligned_cols=175  Identities=13%  Similarity=0.112  Sum_probs=106.8

Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcc
Q 015585           15 SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK   94 (404)
Q Consensus        15 ~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~   94 (404)
                      .++++++|+++++.+.... ..+...+++|++|++++|         .++......++.+++|++|+++++.      +.
T Consensus        43 ~l~~l~~l~l~~~~l~~l~-~~~~~~l~~L~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~------l~  106 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDL---------QIEEIDTYAFAYAHTIQKLYMGFNA------IR  106 (390)
T ss_dssp             GGCCCSEEEEESCEESEEC-THHHHHCCCCSEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CC
T ss_pred             ccCCceEEEecCCchhhCC-hhHhcccccCcEEECCCC---------cccccChhhccCCCCcCEEECCCCC------CC
Confidence            4588999999987666432 333345899999999986         3444334457788999999998863      22


Q ss_pred             ccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCC
Q 015585           95 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI  174 (404)
Q Consensus        95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  174 (404)
                      .+....+    ..+++|++|+++++ .++... ..++..+++|++|+++++. +.... ......+++|+.|+++++. +
T Consensus       107 ~~~~~~~----~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l  177 (390)
T 3o6n_A          107 YLPPHVF----QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQLSSNR-L  177 (390)
T ss_dssp             CCCTTTT----TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCBCC-TTTTSSCTTCCEEECCSSC-C
T ss_pred             cCCHHHh----cCCCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCCc-cCccC-hhhccCCCCCCEEECCCCc-C
Confidence            2322222    46788999999885 443211 1123567889999998875 22111 1123467889999998865 3


Q ss_pred             CHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585          175 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI  223 (404)
Q Consensus       175 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  223 (404)
                      ...   .+..+++|+.|+++++ .+..     +...++|++|+++++.+
T Consensus       178 ~~~---~~~~l~~L~~L~l~~n-~l~~-----~~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          178 THV---DLSLIPSLFHANVSYN-LLST-----LAIPIAVEELDASHNSI  217 (390)
T ss_dssp             SBC---CGGGCTTCSEEECCSS-CCSE-----EECCSSCSEEECCSSCC
T ss_pred             Ccc---ccccccccceeecccc-cccc-----cCCCCcceEEECCCCee
Confidence            322   2345677777777763 3322     22334455555555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=8.8e-21  Score=183.67  Aligned_cols=161  Identities=20%  Similarity=0.168  Sum_probs=95.1

Q ss_pred             hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH-HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH
Q 015585          208 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK-GISHLLCVGGTISQSLTTLDLGYMPGISDDGILT  286 (404)
Q Consensus       208 ~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  286 (404)
                      ..+++|++|++++|.+++.....+ ..+++|+.|+++++. ++.. .+....    ..+++|++|+++++ .++......
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~  422 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNG-LKNFFKVALMT----KNMSSLETLDVSLN-SLNSHAYDR  422 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSC-CCBTTHHHHTT----TTCTTCCEEECTTS-CCBSCCSSC
T ss_pred             cCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCC-cCCcccchhhh----cCCCCCCEEECCCC-cCCCccChh
Confidence            345667777777776654222221 246677777777665 4331 112222    35667777777765 333200001


Q ss_pred             HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccC-CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585          287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      ....+++|+.|++++|. +++.    ...      .. ++|+.|++++| .++.... .+.  .+++|++|++++|.++.
T Consensus       423 ~~~~l~~L~~L~l~~n~-l~~~----~~~------~l~~~L~~L~L~~N-~l~~ip~-~~~--~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          423 TCAWAESILVLNLSSNM-LTGS----VFR------CLPPKVKVLDLHNN-RIMSIPK-DVT--HLQALQELNVASNQLKS  487 (562)
T ss_dssp             CCCCCTTCCEEECCSSC-CCGG----GGS------SCCTTCSEEECCSS-CCCCCCT-TTT--SSCCCSEEECCSSCCCC
T ss_pred             hhcCcccCCEEECCCCC-CCcc----hhh------hhcCcCCEEECCCC-cCcccCh-hhc--CCCCCCEEECCCCCCCC
Confidence            11235677777777774 5431    122      23 57888888885 6653211 111  48899999999999976


Q ss_pred             CChHHHHHHHhcCCccE-EEeccccccccC
Q 015585          366 KGNPVITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       366 ~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      ....    ....++.++ +++.+|++.|++
T Consensus       488 l~~~----~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          488 VPDG----VFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CCTT----STTTCTTCCCEECCSCCBCCCH
T ss_pred             CCHH----HHhcCCCCCEEEecCCCcCCCc
Confidence            5433    235678888 999999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.77  E-value=2e-18  Score=163.20  Aligned_cols=295  Identities=21%  Similarity=0.206  Sum_probs=200.8

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      +..+++|++|+++++.+.....   ...+++|++|++++|..         +.  +..+..+++|++|+++++.......
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l---------~~--~~~~~~l~~L~~L~l~~n~l~~~~~  151 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQI---------TD--IDPLKNLTNLNRLELSSNTISDISA  151 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC---------CC--CGGGTTCTTCSEEEEEEEEECCCGG
T ss_pred             hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCC---------CC--ChHHcCCCCCCEEECCCCccCCChh
Confidence            6778888899988877765432   34588888888888732         21  1225667777777776653211110


Q ss_pred             ccccC----------hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCC
Q 015585           93 FKRVN----------DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCA  162 (404)
Q Consensus        93 ~~~~~----------~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~  162 (404)
                      +....          -..+.. ...+++|+.|+++++. ++..  . .+..+++|+.|+++++.......    ...+++
T Consensus       152 ~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~  222 (466)
T 1o6v_A          152 LSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK-VSDI--S-VLAKLTNLESLIATNNQISDITP----LGILTN  222 (466)
T ss_dssp             GTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSCCCCCGG----GGGCTT
T ss_pred             hccCCcccEeecCCcccCchh-hccCCCCCEEECcCCc-CCCC--h-hhccCCCCCEEEecCCccccccc----ccccCC
Confidence            00000          000011 3567899999999863 3332  1 25678999999999986322222    346899


Q ss_pred             ccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEe
Q 015585          163 LVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLC  242 (404)
Q Consensus       163 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~  242 (404)
                      |+.|+++++. +.+  +..+..+++|++|+++++ .+...  ..+..+++|+.|++++|.+++...   ...+++|+.|+
T Consensus       223 L~~L~l~~n~-l~~--~~~l~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~  293 (466)
T 1o6v_A          223 LDELSLNGNQ-LKD--IGTLASLTNLTDLDLANN-QISNL--APLSGLTKLTELKLGANQISNISP---LAGLTALTNLE  293 (466)
T ss_dssp             CCEEECCSSC-CCC--CGGGGGCTTCSEEECCSS-CCCCC--GGGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEE
T ss_pred             CCEEECCCCC-ccc--chhhhcCCCCCEEECCCC-ccccc--hhhhcCCCCCEEECCCCccCcccc---ccCCCccCeEE
Confidence            9999999976 332  235678999999999996 44432  237789999999999998775322   34689999999


Q ss_pred             ecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCccc
Q 015585          243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEK  322 (404)
Q Consensus       243 l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~  322 (404)
                      +++|. +....  .+     ..+++|+.|+++++ .+++...   ...+++|+.|++++|. +++.  ..+.       .
T Consensus       294 L~~n~-l~~~~--~~-----~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~l~-------~  351 (466)
T 1o6v_A          294 LNENQ-LEDIS--PI-----SNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDV--SSLA-------N  351 (466)
T ss_dssp             CCSSC-CSCCG--GG-----GGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCC--GGGT-------T
T ss_pred             cCCCc-ccCch--hh-----cCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCc--hhhc-------c
Confidence            99987 44322  12     36889999999997 5554322   3468999999999995 6543  2233       5


Q ss_pred             CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585          323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                      +++|+.|++++| .++....  +  ..+++|+.|++++|.++..
T Consensus       352 l~~L~~L~l~~n-~l~~~~~--~--~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          352 LTNINWLSAGHN-QISDLTP--L--ANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CTTCCEEECCSS-CCCBCGG--G--TTCTTCCEEECCCEEEECC
T ss_pred             CCCCCEEeCCCC-ccCccch--h--hcCCCCCEEeccCCcccCC
Confidence            999999999996 5554332  3  3599999999999998753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.77  E-value=7.1e-20  Score=169.15  Aligned_cols=313  Identities=13%  Similarity=0.049  Sum_probs=214.4

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      +..+++|++|+++++.+.......+. .+++|++|++++|.         ++......++.+++|++|+++++.      
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------  128 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA---------IRYLPPHVFQNVPLLTVLVLERND------  128 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------
T ss_pred             hcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCC---------CCcCCHHHhcCCCCCCEEECCCCc------
Confidence            57789999999999888754333443 48999999999973         444334457889999999999864      


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR  172 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  172 (404)
                      +..+....    ...+++|++|+++++ .+.... ...+..+++|+.|+++++. ++...    ...+++|+.|+++++.
T Consensus       129 l~~l~~~~----~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          129 LSSLPRGI----FHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             CCCCCTTT----TTTCTTCCEEECCSS-CCCBCC-TTTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCSEEECCSSC
T ss_pred             cCcCCHHH----hcCCCCCcEEECCCC-ccCccC-hhhccCCCCCCEEECCCCc-CCccc----cccccccceeeccccc
Confidence            22333221    246789999999985 333211 1124567999999999985 33222    3467899999999864


Q ss_pred             CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                       +.     .+...+.|++|+++++ .+.....   ...++|+.|++++|.+++.   .....+++|++|+++++. +...
T Consensus       198 -l~-----~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~-l~~~  263 (390)
T 3o6n_A          198 -LS-----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKI  263 (390)
T ss_dssp             -CS-----EEECCSSCSEEECCSS-CCCEEEC---CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEE
T ss_pred             -cc-----ccCCCCcceEEECCCC-eeeeccc---cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCc-CCCc
Confidence             32     2445678999999985 4543211   2457999999999988764   223468999999999986 5543


Q ss_pred             HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEecc
Q 015585          253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC  332 (404)
Q Consensus       253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~  332 (404)
                      ....+     ..+++|++|+++++ .++...  .....+++|+.|++++|. ++... ..+.       .+++|+.|+++
T Consensus       264 ~~~~~-----~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n~-l~~~~-~~~~-------~l~~L~~L~L~  326 (390)
T 3o6n_A          264 MYHPF-----VKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVE-RNQP-------QFDRLENLYLD  326 (390)
T ss_dssp             ESGGG-----TTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCG-GGHH-------HHTTCSEEECC
T ss_pred             ChhHc-----cccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCCc-ceecC-cccc-------ccCcCCEEECC
Confidence            22233     36789999999996 554321  111347899999999995 54221 1233       37889999999


Q ss_pred             CCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEeccccccccC
Q 015585          333 NCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHD  394 (404)
Q Consensus       333 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~  394 (404)
                      +| .++...     ...+++|+.|++++|++.   ......+.+..+...+.  +.+..|..
T Consensus       327 ~N-~i~~~~-----~~~~~~L~~L~l~~N~~~---~~~~~~~~~~~~~~~~~--~~~~~c~~  377 (390)
T 3o6n_A          327 HN-SIVTLK-----LSTHHTLKNLTLSHNDWD---CNSLRALFRNVARPAVD--DADQHCKI  377 (390)
T ss_dssp             SS-CCCCCC-----CCTTCCCSEEECCSSCEE---HHHHHHHTTTCCTTTBC--CCCSCCCT
T ss_pred             CC-ccceeC-----chhhccCCEEEcCCCCcc---chhHHHHHHHHHhhccc--ccCceecc
Confidence            96 555432     235889999999999984   55666666666555433  34445543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.77  E-value=6.2e-20  Score=183.46  Aligned_cols=330  Identities=14%  Similarity=0.097  Sum_probs=178.4

Q ss_pred             cccCCCCCcEEeccCCCCChH-----------------HHHHHH-hhCCCccEEeecCCCCCCcccccccchhhhhhhcC
Q 015585           12 SYYSSFNLRSLSLVLDVITDE-----------------LLITIT-ASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS   73 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~-----------------~~~~i~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~   73 (404)
                      .+..+++|++|+|+++.++..                 .+..+. ..+++|++|++++|..         .......++.
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l---------~~~iP~~l~~  513 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN---------MTQLPDFLYD  513 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT---------CCSCCGGGGG
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC---------CccChHHHhC
Confidence            478899999999999888862                 333332 2589999999999742         2223355778


Q ss_pred             CCCCceEEecccccCCCCCccccCh----hhHHHHH---hcCCCCcEEEcCCCCCCCHHHHHH--HHHhCCCCcEEEecC
Q 015585           74 CHHLTGLSLTRCRHNHQGTFKRVND----MGMFLLS---EGCKGLESVRLGGFSKVSDAGFAA--ILLSCHSLKKFEVRS  144 (404)
Q Consensus        74 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~  144 (404)
                      +++|+.|+++++..        +..    ..+..+.   ..+++|+.|+++++ .++  .+..  .+..+++|+.|++++
T Consensus       514 L~~L~~L~Ls~N~~--------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~  582 (876)
T 4ecn_A          514 LPELQSLNIACNRG--------ISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVH  582 (876)
T ss_dssp             CSSCCEEECTTCTT--------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCC--------cccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCC
Confidence            89999999987520        232    2222221   34568999999885 444  2322  466778888888888


Q ss_pred             CCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCC-CCEEeccCCCCCChHHHHhhh---------------
Q 015585          145 ASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRN-LEVLDLGGCKSIADTCLRSIS---------------  208 (404)
Q Consensus       145 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~---------------  208 (404)
                      +. ++  .++ ....+++|+.|+++++. +. .....+..+++ |++|+++++ .+.. ....+.               
T Consensus       583 N~-l~--~lp-~~~~L~~L~~L~Ls~N~-l~-~lp~~l~~l~~~L~~L~Ls~N-~L~~-lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          583 NK-VR--HLE-AFGTNVKLTDLKLDYNQ-IE-EIPEDFCAFTDQVEGLGFSHN-KLKY-IPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             SC-CC--BCC-CCCTTSEESEEECCSSC-CS-CCCTTSCEECTTCCEEECCSS-CCCS-CCSCCCTTCSSCEEEEECCSS
T ss_pred             CC-cc--cch-hhcCCCcceEEECcCCc-cc-cchHHHhhccccCCEEECcCC-CCCc-CchhhhccccCCCCEEECcCC
Confidence            75 33  222 33466777788887764 32 11122445566 777777664 3331 111111               


Q ss_pred             ----------------CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhc---CCCCCCcc
Q 015585          209 ----------------CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG---GTISQSLT  269 (404)
Q Consensus       209 ----------------~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~~~~~L~  269 (404)
                                      ..++|+.|++++|.++.. ...+...+++|+.|++++|. +..... ......   -..+++|+
T Consensus       655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~-L~~ip~-~~~~~~~~~l~nl~~L~  731 (876)
T 4ecn_A          655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNL-MTSIPE-NSLKPKDGNYKNTYLLT  731 (876)
T ss_dssp             CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCC-CSCCCT-TSSSCTTSCCTTGGGCC
T ss_pred             cCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCc-CCccCh-HHhccccccccccCCcc
Confidence                            123555666665554421 12222345666666666654 331100 000000   01223677


Q ss_pred             EEecCCCCCCCHHHHHHHH-HhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC-----CCCHHHHH
Q 015585          270 TLDLGYMPGISDDGILTIA-AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI-----GLSVDSLR  343 (404)
Q Consensus       270 ~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~-----~i~~~~~~  343 (404)
                      .|+++++ .++... ..+. ..+++|+.|++++|. ++.     +...+.   .+++|+.|++++++     .+......
T Consensus       732 ~L~Ls~N-~L~~lp-~~l~~~~l~~L~~L~Ls~N~-L~~-----lp~~l~---~L~~L~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          732 TIDLRFN-KLTSLS-DDFRATTLPYLSNMDVSYNC-FSS-----FPTQPL---NSSQLKAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             EEECCSS-CCCCCC-GGGSTTTCTTCCEEECCSSC-CSS-----CCCGGG---GCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred             EEECCCC-CCccch-HHhhhccCCCcCEEEeCCCC-CCc-----cchhhh---cCCCCCEEECCCCCCcccccccccChH
Confidence            7777765 444211 1111 245677777777764 442     111111   46777777776532     22221122


Q ss_pred             hhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccc
Q 015585          344 WVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGC  392 (404)
Q Consensus       344 ~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~  392 (404)
                      .+.  .+++|+.|++++|.+..+...       ..++++ +++.+|++..
T Consensus       801 ~l~--~L~~L~~L~Ls~N~L~~Ip~~-------l~~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          801 GIT--TCPSLIQLQIGSNDIRKVDEK-------LTPQLYILDIADNPNIS  841 (876)
T ss_dssp             TGG--GCSSCCEEECCSSCCCBCCSC-------CCSSSCEEECCSCTTCE
T ss_pred             HHh--cCCCCCEEECCCCCCCccCHh-------hcCCCCEEECCCCCCCc
Confidence            222  366777777777776443221       125666 7777776644

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.77  E-value=2e-20  Score=183.25  Aligned_cols=334  Identities=13%  Similarity=0.084  Sum_probs=188.3

Q ss_pred             cccCCCCCcEEeccCCCCChH-----------------HHHHHH-hhCCCccEEeecCCCCCCcccccccchhhhhhhcC
Q 015585           12 SYYSSFNLRSLSLVLDVITDE-----------------LLITIT-ASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGS   73 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~-----------------~~~~i~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~   73 (404)
                      .+..+++|++|+|+++.++..                 .+..+. ..+++|++|++++|.         +.......++.
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~---------l~~~~p~~l~~  271 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP---------NLTKLPTFLKA  271 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT---------TCSSCCTTTTT
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc---------CCccChHHHhc
Confidence            478899999999999888863                 333333 158999999999974         23333355778


Q ss_pred             CCCCceEEecccccCCCCCccccChhhHH-HHH-----hcCCCCcEEEcCCCCCCCHHHHHH--HHHhCCCCcEEEecCC
Q 015585           74 CHHLTGLSLTRCRHNHQGTFKRVNDMGMF-LLS-----EGCKGLESVRLGGFSKVSDAGFAA--ILLSCHSLKKFEVRSA  145 (404)
Q Consensus        74 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~-----~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~  145 (404)
                      +++|++|+++++.        .+....+. .+.     ..+++|+.|+++++ .++  .+..  .+..+++|+.|+++++
T Consensus       272 l~~L~~L~Ls~n~--------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          272 LPEMQLINVACNR--------GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             CSSCCEEECTTCT--------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSC
T ss_pred             CCCCCEEECcCCC--------CCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCC
Confidence            8999999998752        13331122 221     23488999999885 444  2322  4667788888888887


Q ss_pred             CCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCC--------------------------CCCEEeccCCCCC
Q 015585          146 SFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR--------------------------NLEVLDLGGCKSI  199 (404)
Q Consensus       146 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--------------------------~L~~L~l~~~~~~  199 (404)
                      .. +. .+. ....+++|+.|+++++. +. .....+..++                          +|++|+++++ .+
T Consensus       341 ~l-~g-~ip-~~~~l~~L~~L~L~~N~-l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l  414 (636)
T 4eco_A          341 QL-EG-KLP-AFGSEIKLASLNLAYNQ-IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN-EI  414 (636)
T ss_dssp             CC-EE-ECC-CCEEEEEESEEECCSSE-EE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSS-CT
T ss_pred             cC-cc-chh-hhCCCCCCCEEECCCCc-cc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCC-cC
Confidence            52 20 011 12233444444444432 11 0001122233                          4555555552 33


Q ss_pred             ChHHHHhhh-------CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhh---cCCCCCCcc
Q 015585          200 ADTCLRSIS-------CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCV---GGTISQSLT  269 (404)
Q Consensus       200 ~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~~~L~  269 (404)
                      .......+.       .+++|+.|++++|.++.. ...+...+++|++|+++++. ++.... ....+   ....+++|+
T Consensus       415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~~~~~~~~l~~L~  491 (636)
T 4eco_A          415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF-PKELFSTGSPLSSINLMGNM-LTEIPK-NSLKDENENFKNTYLLT  491 (636)
T ss_dssp             TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC-CTHHHHTTCCCSEEECCSSC-CSBCCS-SSSEETTEECTTGGGCC
T ss_pred             CCcchhhhcccccccccCCCCCEEECcCCccCcC-CHHHHccCCCCCEEECCCCC-CCCcCH-HHhccccccccccCCcc
Confidence            332222233       445777777777766521 12233346778888887765 431110 00000   001123788


Q ss_pred             EEecCCCCCCCHHHHHHHH-HhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC-----CCCHHHHH
Q 015585          270 TLDLGYMPGISDDGILTIA-AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI-----GLSVDSLR  343 (404)
Q Consensus       270 ~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~-----~i~~~~~~  343 (404)
                      +|+++++ .++... ..+. ..+++|+.|++++|. ++. .-..+.       .+++|+.|+++++.     .+......
T Consensus       492 ~L~Ls~N-~l~~lp-~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~-------~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          492 SIDLRFN-KLTKLS-DDFRATTLPYLVGIDLSYNS-FSK-FPTQPL-------NSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             EEECCSS-CCCBCC-GGGSTTTCTTCCEEECCSSC-CSS-CCCGGG-------GCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             EEECcCC-cCCccC-hhhhhccCCCcCEEECCCCC-CCC-cChhhh-------cCCCCCEEECCCCcccccCcccccChH
Confidence            8888885 555211 1111 256888888888885 543 111222       57888888886532     22322222


Q ss_pred             hhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585          344 WVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       344 ~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      .+.  .+++|++|++++|.+......       ..+.++ +++.+|++.|.+
T Consensus       561 ~l~--~l~~L~~L~Ls~N~l~~ip~~-------~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          561 GIT--LCPSLTQLQIGSNDIRKVNEK-------ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             TGG--GCSSCCEEECCSSCCCBCCSC-------CCTTCCEEECCSCTTCEEE
T ss_pred             HHh--cCCCCCEEECCCCcCCccCHh-------HhCcCCEEECcCCCCcccc
Confidence            333  378899999999888554322       226777 888898887753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=1.3e-17  Score=152.23  Aligned_cols=168  Identities=14%  Similarity=0.219  Sum_probs=76.3

Q ss_pred             hcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCC-CCcEEEcCCCCCCCHH---HHHHHHHhC-CCCcEEEecCC
Q 015585           71 LGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCK-GLESVRLGGFSKVSDA---GFAAILLSC-HSLKKFEVRSA  145 (404)
Q Consensus        71 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~---~~~~l~~~~-~~L~~L~l~~~  145 (404)
                      +...++|++|+++++.      +.......+......++ +|++|+++++ .+++.   .+...+... ++|++|+++++
T Consensus        18 ~~~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n   90 (362)
T 3goz_A           18 TSIPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN   90 (362)
T ss_dssp             HTSCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred             HhCCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence            3455557777777653      22233333333344556 6777777764 33332   233333333 66666666666


Q ss_pred             CC--CCHHHHHHHHcCC-CCccEEEccCCCCCCHHHHHHhh----C-CCCCCEEeccCCCCCChHHHHhh----hCCC-C
Q 015585          146 SF--LSDLAFHDLTGVP-CALVEVRLLWCRLITSETVKKLA----S-SRNLEVLDLGGCKSIADTCLRSI----SCLR-K  212 (404)
Q Consensus       146 ~~--~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~~~~l----~~~~-~  212 (404)
                      ..  .....+....... ++|+.|+++++. +++.....++    . +++|++|+++++ .+++.+...+    ...+ +
T Consensus        91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~  168 (362)
T 3goz_A           91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPAN  168 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTT
T ss_pred             cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcc
Confidence            41  1122233333333 556666665554 3332222222    2 245555555553 4443322222    2233 5


Q ss_pred             CCEEEccCCccCHHHHHHHHh---cC-CCcCEEeecCCC
Q 015585          213 LTALNLTGADITDSGLSILAQ---GN-LPIMNLCLRGCK  247 (404)
Q Consensus       213 L~~L~l~~~~l~~~~l~~l~~---~~-~~L~~L~l~~~~  247 (404)
                      |++|++++|.+++.+...++.   .+ ++|++|++++|.
T Consensus       169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            555555555544333222221   22 245555555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=2.3e-18  Score=157.29  Aligned_cols=255  Identities=17%  Similarity=0.158  Sum_probs=177.9

Q ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHH---HHHHHHHhCC-CCcEEEecCCCCCC---HHHHHHHHcCC-CCccEEEccCCC
Q 015585          101 MFLLSEGCKGLESVRLGGFSKVSDA---GFAAILLSCH-SLKKFEVRSASFLS---DLAFHDLTGVP-CALVEVRLLWCR  172 (404)
Q Consensus       101 l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~-~L~~L~l~~~~~~~---~~~l~~~~~~~-~~L~~L~l~~~~  172 (404)
                      +..+....++|++|+++++ .+++.   .+...+..++ +|++|+++++. ++   ...+....... ++|++|++++|.
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            4444455667999999996 44443   3444566777 99999999995 43   33444444444 899999999986


Q ss_pred             CCCHHHHHH----hhCC-CCCCEEeccCCCCCChHHHHhhh----C-CCCCCEEEccCCccCHHHHHHHHh---cCC-Cc
Q 015585          173 LITSETVKK----LASS-RNLEVLDLGGCKSIADTCLRSIS----C-LRKLTALNLTGADITDSGLSILAQ---GNL-PI  238 (404)
Q Consensus       173 ~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~l~----~-~~~L~~L~l~~~~l~~~~l~~l~~---~~~-~L  238 (404)
                       +++.....    +..+ ++|++|+++++ .+++.....++    . .++|++|++++|.+++.+...++.   ..+ +|
T Consensus        92 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           92 -LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             -GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             -CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence             44433333    4455 89999999995 67665555443    3 469999999999988766555443   344 89


Q ss_pred             CEEeecCCCCCcHHHHHHHHhhcCCCC-CCccEEecCCCCCCCHHHHHHHHH---h-CCCCceEeecCCCCCCHHHHHHH
Q 015585          239 MNLCLRGCKRVTDKGISHLLCVGGTIS-QSLTTLDLGYMPGISDDGILTIAA---A-GIGIIDLCVRSCFYVTDASVEAL  313 (404)
Q Consensus       239 ~~L~l~~~~~l~~~~~~~l~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~---~-~~~L~~L~l~~~~~~~~~~~~~l  313 (404)
                      ++|++++|. +++.+...+.... ..+ ++|++|+++++ .+++.+...+..   . .++|++|++++|. +++.+...+
T Consensus       170 ~~L~Ls~n~-l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l  245 (362)
T 3goz_A          170 NSLNLRGNN-LASKNCAELAKFL-ASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENL  245 (362)
T ss_dssp             CEEECTTSC-GGGSCHHHHHHHH-HTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHH
T ss_pred             cEeeecCCC-CchhhHHHHHHHH-HhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHH
Confidence            999999987 6554443322100 234 59999999996 677644443332   2 4699999999995 887766666


Q ss_pred             HhhCCCcccCCCCcEEeccCCC--CCCHHHHHhhh--cCCCCcccEEecCCccccCC
Q 015585          314 ARKQPDQEKSKQLRRLDLCNCI--GLSVDSLRWVK--RPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       314 ~~~~~~~~~~~~L~~L~l~~~~--~i~~~~~~~l~--~~~~~~L~~L~l~~~~l~~~  366 (404)
                      .....   .+++|+.|++++|.  .++..+...+.  ...+++|+.|++++|.+...
T Consensus       246 ~~~~~---~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          246 KLLKD---SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHTTT---TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHh---cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            65544   68999999999963  37777666654  23588999999999998644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=8.6e-19  Score=175.24  Aligned_cols=241  Identities=14%  Similarity=0.147  Sum_probs=141.5

Q ss_pred             hhCCCccEEeecCCCCCCcccccccch--------hhhhhhc--CCCCCceEEecccccCCCCCccccChhhHHHHHhcC
Q 015585           39 ASLPFLVELDLEDRPNTEPLARLDLTS--------SGLQSLG--SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGC  108 (404)
Q Consensus        39 ~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~  108 (404)
                      ..+++|++|++++|....+........        .....++  .+++|+.|++++|..      ...-+.    ....+
T Consensus       445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l------~~~iP~----~l~~L  514 (876)
T 4ecn_A          445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN------MTQLPD----FLYDL  514 (876)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT------CCSCCG----GGGGC
T ss_pred             hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC------CccChH----HHhCC
Confidence            347899999999974321000000000        1233455  889999999988631      111112    22578


Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHH-------hCCCCcEEEecCCCCCCHHHHHH--HHcCCCCccEEEccCCCCCCHHHH
Q 015585          109 KGLESVRLGGFSKVSDAGFAAILL-------SCHSLKKFEVRSASFLSDLAFHD--LTGVPCALVEVRLLWCRLITSETV  179 (404)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~  179 (404)
                      ++|+.|+++++..++...+..-+.       .+++|+.|+++++. ++  .++.  ....+++|+.|+++++. +.  .+
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~--~l  588 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPASASLQKMVKLGLLDCVHNK-VR--HL  588 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCHHHHTTCTTCCEEECTTSC-CC--BC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCChhhhhcCCCCCEEECCCCC-cc--cc
Confidence            899999999964366522222222       34699999999986 33  2333  45578999999999876 33  22


Q ss_pred             HHhhCCCCCCEEeccCCCCCChHHHHhhhCCCC-CCEEEccCCccCHHHHHHHHhcC--CCcCEEeecCCCCCcHHHHHH
Q 015585          180 KKLASSRNLEVLDLGGCKSIADTCLRSISCLRK-LTALNLTGADITDSGLSILAQGN--LPIMNLCLRGCKRVTDKGISH  256 (404)
Q Consensus       180 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~l~~l~~~~--~~L~~L~l~~~~~l~~~~~~~  256 (404)
                      ..+..+++|++|+++++ .+. .....+..+++ |+.|++++|.++.  +.......  ++|+.|++++|. +.... ..
T Consensus       589 p~~~~L~~L~~L~Ls~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~-l~g~i-p~  662 (876)
T 4ecn_A          589 EAFGTNVKLTDLKLDYN-QIE-EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNK-IGSEG-RN  662 (876)
T ss_dssp             CCCCTTSEESEEECCSS-CCS-CCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSC-TTTTS-SS
T ss_pred             hhhcCCCcceEEECcCC-ccc-cchHHHhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCc-CCCcc-cc
Confidence            25668899999999985 555 33345667788 9999999987762  22111112  348888888775 32210 00


Q ss_pred             HHh-hcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585          257 LLC-VGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       257 l~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      +.. ......++|+.|+++++ .++.. ...+...+++|+.|++++|.
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCC
T ss_pred             chhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCc
Confidence            000 00012346777777775 44421 12223346677777777663

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.75  E-value=4.7e-21  Score=193.95  Aligned_cols=60  Identities=17%  Similarity=0.089  Sum_probs=29.2

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC   85 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   85 (404)
                      ++|++|+|+++.++......+. .+++|++|++++|..        ........+..+++|++|+++++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~-~l~~L~~LdLs~n~~--------~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFP-FLEQLQLLELGSQYT--------PLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCS-SCCSCSEEEECTTCC--------CCEECTTTTSSCTTCCEEECTTC
T ss_pred             CCcCEEECCCCcCCccChhHCc-ccccCeEEeCCCCCC--------ccccCHHHhcCCCCCCEEECCCC
Confidence            5566666666555533222222 356666666666521        11111223455556666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=2e-19  Score=175.11  Aligned_cols=311  Identities=15%  Similarity=0.117  Sum_probs=159.9

Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcc
Q 015585           15 SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK   94 (404)
Q Consensus        15 ~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~   94 (404)
                      .+.+++.++++++.+... +..+...+++|++|++++|         .++......++.+++|++|+++++.      +.
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~------l~  112 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDL---------QIEEIDTYAFAYAHTIQKLYMGFNA------IR  112 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CC
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCC---------CCCCCChHHhcCCCCCCEEECCCCc------CC
Confidence            357788888887666543 2333345889999999886         3443333456788888999988753      22


Q ss_pred             ccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCC
Q 015585           95 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI  174 (404)
Q Consensus        95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  174 (404)
                      .+....+    ..+++|+.|+++++ .++... ..++..+++|+.|+++++. ++... ......+++|+.|+++++. +
T Consensus       113 ~~~~~~~----~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l  183 (597)
T 3oja_B          113 YLPPHVF----QNVPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQLSSNR-L  183 (597)
T ss_dssp             CCCTTTT----TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCBCC-TTTTTTCTTCCEEECTTSC-C
T ss_pred             CCCHHHH----cCCCCCCEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCCc-CCCCC-hhhhhcCCcCcEEECcCCC-C
Confidence            2332222    46788888888885 333211 1223567888888888874 22111 1123467888888888865 3


Q ss_pred             CHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHH
Q 015585          175 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI  254 (404)
Q Consensus       175 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~  254 (404)
                      ...   .+..+++|+.|+++++ .+..     +...++|+.|++++|.++....    ...++|+.|++++|. +++.  
T Consensus       184 ~~~---~~~~l~~L~~L~l~~n-~l~~-----l~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~-l~~~--  247 (597)
T 3oja_B          184 THV---DLSLIPSLFHANVSYN-LLST-----LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNN-LTDT--  247 (597)
T ss_dssp             SBC---CGGGCTTCSEEECCSS-CCSE-----EECCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSC-CCCC--
T ss_pred             CCc---ChhhhhhhhhhhcccC-cccc-----ccCCchhheeeccCCccccccc----ccCCCCCEEECCCCC-CCCC--
Confidence            321   2345677777777763 3322     2233455556655554432110    012455555555554 3221  


Q ss_pred             HHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585          255 SHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC  334 (404)
Q Consensus       255 ~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~  334 (404)
                      ..+     ..+++|+.|+++++ .++......+ ..+++|+.|++++|. ++.     +.....   .+++|+.|++++|
T Consensus       248 ~~l-----~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~-----l~~~~~---~l~~L~~L~Ls~N  311 (597)
T 3oja_B          248 AWL-----LNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNNR-LVA-----LNLYGQ---PIPTLKVLDLSHN  311 (597)
T ss_dssp             GGG-----GGCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECTTSC-CCE-----EECSSS---CCTTCCEEECCSS
T ss_pred             hhh-----ccCCCCCEEECCCC-ccCCCCHHHh-cCccCCCEEECCCCC-CCC-----CCcccc---cCCCCcEEECCCC
Confidence            111     23455555555553 3332111111 134555555555553 322     011001   3455555555553


Q ss_pred             CCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585          335 IGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH  393 (404)
Q Consensus       335 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~  393 (404)
                       .++... ..+.  .+++|+.|++++|.++...       ...+|.++ +++.+|++.|.
T Consensus       312 -~l~~i~-~~~~--~l~~L~~L~L~~N~l~~~~-------~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          312 -HLLHVE-RNQP--QFDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             -CCCCCG-GGHH--HHTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSCEEHH
T ss_pred             -CCCccC-cccc--cCCCCCEEECCCCCCCCcC-------hhhcCCCCEEEeeCCCCCCh
Confidence             333111 0111  2445555555555554331       13344554 55555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=4.5e-19  Score=170.17  Aligned_cols=161  Identities=19%  Similarity=0.184  Sum_probs=106.0

Q ss_pred             hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH-HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH
Q 015585          208 SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK-GISHLLCVGGTISQSLTTLDLGYMPGISDDGILT  286 (404)
Q Consensus       208 ~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  286 (404)
                      ..+++|++|++++|.+++.....+ ..+++|+.|++++|. ++.. .+....    ..+++|++|+++++ .++......
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~----~~l~~L~~L~Ls~N-~l~~~l~~~  393 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMT----TQMKSLQQLDISQN-SVSYDEKKG  393 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHH----TTCTTCCEEECCSS-CCBCCGGGC
T ss_pred             hhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHH----hhCCCCCEEECCCC-cCCcccccc
Confidence            467889999999988776333322 357889999998887 5542 222333    46789999999886 444311111


Q ss_pred             HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccC-CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585          287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      ....+++|+.|++++|. +++.    ...      .. ++|+.|++++| .++.... .+.  .+++|++|++++|.++.
T Consensus       394 ~~~~l~~L~~L~Ls~N~-l~~~----~~~------~l~~~L~~L~Ls~N-~l~~ip~-~~~--~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNI-LTDT----IFR------CLPPRIKVLDLHSN-KIKSIPK-QVV--KLEALQELNVASNQLKS  458 (520)
T ss_dssp             SCCCCTTCCEEECCSSC-CCGG----GGG------SCCTTCCEEECCSS-CCCCCCG-GGG--GCTTCCEEECCSSCCCC
T ss_pred             hhccCccCCEEECcCCC-CCcc----hhh------hhcccCCEEECCCC-cccccch-hhh--cCCCCCEEECCCCcCCc
Confidence            12346889999999885 5532    122      22 58999999985 6663221 122  48899999999998876


Q ss_pred             CChHHHHHHHhcCCccE-EEeccccccccC
Q 015585          366 KGNPVITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       366 ~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      ....    ....+++++ +++.+|++.|++
T Consensus       459 l~~~----~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          459 VPDG----IFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             CCTT----TTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCHH----HhccCCcccEEECcCCCCcccC
Confidence            5333    234677887 999999998873

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=3.4e-18  Score=165.18  Aligned_cols=204  Identities=18%  Similarity=0.112  Sum_probs=123.0

Q ss_pred             CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585           16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      |+.....+.+++.++.. +..   ..++|++|++++|.         ++......++.+++|++|+++++.      +..
T Consensus         4 C~~~~~c~~~~~~l~~i-p~~---~~~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------i~~   64 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSI-PSG---LTAAMKSLDLSFNK---------ITYIGHGDLRACANLQVLILKSSR------INT   64 (549)
T ss_dssp             ECTTSEEECTTSCCSSC-CSC---CCTTCCEEECCSSC---------CCEECSSTTSSCTTCCEEECTTSC------CCE
T ss_pred             CCCCceEECCCCccccc-ccc---CCCCccEEECcCCc---------cCccChhhhhcCCcccEEECCCCC------cCc
Confidence            34444456665555421 111   13689999999973         444444567899999999999864      222


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      +....+    ..+++|++|+++++ .++.... ..+..+++|++|+++++. ++..........+++|+.|+++++..+.
T Consensus        65 ~~~~~~----~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~  137 (549)
T 2z81_A           65 IEGDAF----YSLGSLEHLDLSDN-HLSSLSS-SWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFS  137 (549)
T ss_dssp             ECTTTT----TTCTTCCEEECTTS-CCCSCCH-HHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred             cChhhc----cccccCCEEECCCC-ccCccCH-HHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCcccc
Confidence            332222    56789999999985 4443222 235678999999999985 3221112234567899999998875333


Q ss_pred             HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      ......+..+++|++|+++++ .+.......+..+++|++|++..+.+.... ..+...+++|++|+++++.
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          138 EIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLL-EIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             EECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSBSTTHH-HHHHHSTTTBSEEEEESCB
T ss_pred             ccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCcccccc-hhhHhhcccccEEEccCCc
Confidence            322234567888888888874 555444445555666666666665543221 1122235556666555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.75  E-value=2.9e-19  Score=167.83  Aligned_cols=207  Identities=20%  Similarity=0.147  Sum_probs=121.8

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      .+..+++|++|+++++.+...  +.+ ..+++|++|++++|.         ++..   .++.+++|++|+++++.     
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~--~~l-~~l~~L~~L~Ls~n~---------l~~~---~~~~l~~L~~L~Ls~N~-----   96 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM--TGI-EKLTGLTKLICTSNN---------ITTL---DLSQNTNLTYLACDSNK-----   96 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC--TTG-GGCTTCSEEECCSSC---------CSCC---CCTTCTTCSEEECCSSC-----
T ss_pred             ChhHcCCCCEEEccCCCcccC--hhh-cccCCCCEEEccCCc---------CCeE---ccccCCCCCEEECcCCC-----
Confidence            456678888888888777643  233 348888888888873         2221   15677888888887753     


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC  171 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  171 (404)
                       +..+   .    ...+++|++|+++++ .++...    +..+++|+.|+++++. ++...    ...+++|+.|+++++
T Consensus        97 -l~~~---~----~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A           97 -LTNL---D----VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLN  158 (457)
T ss_dssp             -CSCC---C----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTC
T ss_pred             -Ccee---e----cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCc-cceec----cccCCcCCEEECCCC
Confidence             1222   1    245677888888774 333221    4556777777777774 22211    335667777777776


Q ss_pred             CCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585          172 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD  251 (404)
Q Consensus       172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~  251 (404)
                      ..+...   .+..+++|++|+++++ .++...   +..+++|+.|++++|.+++..    ...+++|++|+++++. ++.
T Consensus       159 ~~~~~~---~~~~l~~L~~L~ls~n-~l~~l~---l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~-l~~  226 (457)
T 3bz5_A          159 KKITKL---DVTPQTQLTTLDCSFN-KITELD---VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNK-LTE  226 (457)
T ss_dssp             SCCCCC---CCTTCTTCCEEECCSS-CCCCCC---CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSC
T ss_pred             Cccccc---ccccCCcCCEEECCCC-ccceec---cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCc-ccc
Confidence            433322   2445677777777664 443321   455666666766666555431    2245666666666665 333


Q ss_pred             HHHHHHHhhcCCCCCCccEEecCCC
Q 015585          252 KGISHLLCVGGTISQSLTTLDLGYM  276 (404)
Q Consensus       252 ~~~~~l~~~~~~~~~~L~~L~l~~~  276 (404)
                      ..    .    ..+++|+.|+++++
T Consensus       227 ip----~----~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          227 ID----V----TPLTQLTYFDCSVN  243 (457)
T ss_dssp             CC----C----TTCTTCSEEECCSS
T ss_pred             cC----c----cccCCCCEEEeeCC
Confidence            11    1    24556666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=5.1e-19  Score=175.39  Aligned_cols=91  Identities=15%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC-CCHHHHHhhhcCCCCcccEEecCCccccCCCh
Q 015585          290 AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG-LSVDSLRWVKRPSFRGLHWLGIGQTRLASKGN  368 (404)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~-i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~  368 (404)
                      .+++|+.|++++|. ++......+.       .+++|+.|++++|.. +.......+.....++|+.|++++|.++....
T Consensus       327 ~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~  398 (680)
T 1ziw_A          327 WLKCLEHLNMEDND-IPGIKSNMFT-------GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES  398 (680)
T ss_dssp             TCTTCCEEECCSCC-BCCCCTTTTT-------TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred             cCCCCCEEECCCCc-cCCCChhHhc-------cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence            35666677776663 3321111122       466777777766421 11110011111113577888888877754322


Q ss_pred             HHHHHHHhcCCccE-EEeccccccc
Q 015585          369 PVITEIHNERPWLT-FCLDGCEIGC  392 (404)
Q Consensus       369 ~~~~~~~~~~~~l~-l~~~~~~~~~  392 (404)
                      .   .+ ..+++++ +++.+|.+..
T Consensus       399 ~---~~-~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          399 D---AF-SWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             T---TT-TTCTTCCEEECCSSCCEE
T ss_pred             h---hh-hCCCCCCEEeCCCCcCcc
Confidence            1   22 4677887 8888888753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.74  E-value=3.5e-20  Score=180.00  Aligned_cols=187  Identities=12%  Similarity=0.036  Sum_probs=122.1

Q ss_pred             CCCCccEEEccCCCCCCHHH--HHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCC
Q 015585          159 VPCALVEVRLLWCRLITSET--VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNL  236 (404)
Q Consensus       159 ~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~  236 (404)
                      .+++|+.|+++++. +....  ...+..+++|++|+++++ .+..... .+..+++|++|++++|.++..........++
T Consensus       345 ~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  421 (570)
T 2z63_A          345 DLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  421 (570)
T ss_dssp             BCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred             cCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-ccccccc-cccccCCCCEEEccCCccccccchhhhhcCC
Confidence            34566666666654 22111  123456788888888875 3333222 2668899999999998765432222234689


Q ss_pred             CcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhh
Q 015585          237 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARK  316 (404)
Q Consensus       237 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  316 (404)
                      +|++|++++|. +.......+     ..+++|++|+++++ .+++..+......+++|+.|++++|. +++.....+.  
T Consensus       422 ~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~--  491 (570)
T 2z63_A          422 NLIYLDISHTH-TRVAFNGIF-----NGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN--  491 (570)
T ss_dssp             TCCEEECTTSC-CEECCTTTT-----TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT--
T ss_pred             CCCEEeCcCCc-ccccchhhh-----hcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCChhhhh--
Confidence            99999999986 433221122     46789999999997 44321111222457999999999995 6543222333  


Q ss_pred             CCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585          317 QPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       317 ~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                           .+++|+.|++++| .++......+.  .+++|+.|++++|+++..
T Consensus       492 -----~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          492 -----SLSSLQVLNMASN-QLKSVPDGIFD--RLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             -----TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCBCCC
T ss_pred             -----cccCCCEEeCCCC-cCCCCCHHHhh--cccCCcEEEecCCcccCC
Confidence                 5899999999996 66654333343  589999999999998754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=6.2e-19  Score=171.71  Aligned_cols=302  Identities=13%  Similarity=0.045  Sum_probs=207.8

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      +..+++|++|+|+++.+.......+. .+++|++|++++|.         ++......++.+++|++|+++++.      
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------  134 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA---------IRYLPPHVFQNVPLLTVLVLERND------  134 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCc---------CCCCCHHHHcCCCCCCEEEeeCCC------
Confidence            56789999999999888764433444 48999999999973         444344456889999999999864      


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR  172 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  172 (404)
                      +..+....    +..+++|+.|+++++ .++... ...+..+++|+.|+++++. ++...    ...+++|+.|+++++.
T Consensus       135 l~~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          135 LSSLPRGI----FHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             CCCCCTTT----TTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSEEECCSSC
T ss_pred             CCCCCHHH----hccCCCCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhhhhcccCc
Confidence            22333221    256789999999985 333221 1124567999999999985 33222    3467899999999875


Q ss_pred             CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                       +.     .+...++|+.|+++++ .+.....   ...++|+.|++++|.+++.   .....+++|+.|++++|. +...
T Consensus       204 -l~-----~l~~~~~L~~L~ls~n-~l~~~~~---~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~  269 (597)
T 3oja_B          204 -LS-----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKI  269 (597)
T ss_dssp             -CS-----EEECCTTCSEEECCSS-CCCEEEC---SCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEE
T ss_pred             -cc-----cccCCchhheeeccCC-ccccccc---ccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc-cCCC
Confidence             32     2456788999999985 4443211   1247899999999988763   223468999999999987 5543


Q ss_pred             HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEecc
Q 015585          253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC  332 (404)
Q Consensus       253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~  332 (404)
                      ....+     ..+++|+.|+++++ .++...  .....+++|+.|++++|. ++... ..+.       .+++|+.|+++
T Consensus       270 ~~~~~-----~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~-------~l~~L~~L~L~  332 (597)
T 3oja_B          270 MYHPF-----VKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVE-RNQP-------QFDRLENLYLD  332 (597)
T ss_dssp             ESGGG-----TTCSSCCEEECTTS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCG-GGHH-------HHTTCSEEECC
T ss_pred             CHHHh-----cCccCCCEEECCCC-CCCCCC--cccccCCCCcEEECCCCC-CCccC-cccc-------cCCCCCEEECC
Confidence            22233     36789999999996 554311  111347899999999996 54211 1233       47889999999


Q ss_pred             CCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCcc
Q 015585          333 NCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWL  381 (404)
Q Consensus       333 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l  381 (404)
                      +| .++...     ...+++|+.|++++|++.   ...+..+....+..
T Consensus       333 ~N-~l~~~~-----~~~~~~L~~L~l~~N~~~---~~~~~~~~~~~~~~  372 (597)
T 3oja_B          333 HN-SIVTLK-----LSTHHTLKNLTLSHNDWD---CNSLRALFRNVARP  372 (597)
T ss_dssp             SS-CCCCCC-----CCTTCCCSEEECCSSCEE---HHHHHHHTTTCCTT
T ss_pred             CC-CCCCcC-----hhhcCCCCEEEeeCCCCC---ChhHHHHHHHHhhh
Confidence            96 555432     235899999999999984   44455554444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.74  E-value=2.4e-19  Score=175.68  Aligned_cols=243  Identities=9%  Similarity=0.045  Sum_probs=141.7

Q ss_pred             hhCCCccEEeecCCCCCCc----ccccc----cchhhhhhhc--CCCCCceEEecccccCCCCCccccChhhHHHHHhcC
Q 015585           39 ASLPFLVELDLEDRPNTEP----LARLD----LTSSGLQSLG--SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGC  108 (404)
Q Consensus        39 ~~~~~L~~L~l~~~~~~~~----~~~~~----~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~  108 (404)
                      ..+++|++|++++|...++    .|...    ........++  .+++|++|+++++..      ...-+..    ...+
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l------~~~~p~~----l~~l  272 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN------LTKLPTF----LKAL  272 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT------CSSCCTT----TTTC
T ss_pred             hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC------CccChHH----HhcC
Confidence            3488999999999853210    00000    0000334466  899999999988641      1111111    2567


Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHh------CCCCcEEEecCCCCCCHHHHHH--HHcCCCCccEEEccCCCCCCHHHHH
Q 015585          109 KGLESVRLGGFSKVSDAGFAAILLS------CHSLKKFEVRSASFLSDLAFHD--LTGVPCALVEVRLLWCRLITSETVK  180 (404)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~l~~~------~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~  180 (404)
                      ++|+.|+++++..++...+..-+..      +++|+.|+++++. ++  .+..  ....+++|+.|+++++. +..... 
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip-  347 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQ-LEGKLP-  347 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCC-CEEECC-
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCc-Cccchh-
Confidence            8999999999643766233333333      4899999999986 33  2333  45588999999999876 331111 


Q ss_pred             HhhCCCCCCEEeccCCCCCChHHHHhhhCCCC-CCEEEccCCccCHHHHHHHHh--cCCCcCEEeecCCCCCcHHHHHHH
Q 015585          181 KLASSRNLEVLDLGGCKSIADTCLRSISCLRK-LTALNLTGADITDSGLSILAQ--GNLPIMNLCLRGCKRVTDKGISHL  257 (404)
Q Consensus       181 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~l~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l  257 (404)
                      .+..+++|++|+++++ .+. .....+..+++ |++|++++|.++.  +.....  .+++|+.|++++|. +.......+
T Consensus       348 ~~~~l~~L~~L~L~~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l  422 (636)
T 4eco_A          348 AFGSEIKLASLNLAYN-QIT-EIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNF  422 (636)
T ss_dssp             CCEEEEEESEEECCSS-EEE-ECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSS
T ss_pred             hhCCCCCCCEEECCCC-ccc-cccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCc-CCCcchhhh
Confidence            5567889999999985 444 23334567778 9999999887662  211111  13367888887775 332111100


Q ss_pred             H--hhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585          258 L--CVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       258 ~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      .  ......+++|++|+++++ .++.. ...+...+++|+.|++++|.
T Consensus       423 ~~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          423 DPLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             CTTCSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC
T ss_pred             cccccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC
Confidence            0  000003456777777765 44421 11223345666666666663

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.71  E-value=4.7e-18  Score=164.53  Aligned_cols=161  Identities=11%  Similarity=0.149  Sum_probs=113.7

Q ss_pred             hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHH-HHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhc
Q 015585          183 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG  261 (404)
Q Consensus       183 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  261 (404)
                      ..+++|++|+++++ .+.......+..+++|+.|++++|.++.. ........+++|++|+++++. +.........   
T Consensus       350 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~---  424 (562)
T 3a79_B          350 PSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTC---  424 (562)
T ss_dssp             SSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCC---
T ss_pred             cCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhh---
Confidence            45788999999984 66665566678899999999999988752 223333468999999999987 4331111112   


Q ss_pred             CCCCCCccEEecCCCCCCCHHHHHHHHHhC-CCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHH
Q 015585          262 GTISQSLTTLDLGYMPGISDDGILTIAAAG-IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD  340 (404)
Q Consensus       262 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~  340 (404)
                       ..+++|++|+++++ .++....    ..+ ++|+.|++++|. ++     .+.....   .+++|+.|+++++ .++..
T Consensus       425 -~~l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N~-l~-----~ip~~~~---~l~~L~~L~L~~N-~l~~l  488 (562)
T 3a79_B          425 -AWAESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNNR-IM-----SIPKDVT---HLQALQELNVASN-QLKSV  488 (562)
T ss_dssp             -CCCTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSSC-CC-----CCCTTTT---SSCCCSEEECCSS-CCCCC
T ss_pred             -cCcccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCCc-Cc-----ccChhhc---CCCCCCEEECCCC-CCCCC
Confidence             46789999999996 6654222    233 699999999995 65     2222222   5899999999995 66643


Q ss_pred             HHHhhhcCCCCcccEEecCCccccCC
Q 015585          341 SLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       341 ~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                      ....+  ..+++|+.|++++|++...
T Consensus       489 ~~~~~--~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          489 PDGVF--DRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CTTST--TTCTTCCCEECCSCCBCCC
T ss_pred             CHHHH--hcCCCCCEEEecCCCcCCC
Confidence            32223  3589999999999998743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.71  E-value=1.5e-18  Score=175.66  Aligned_cols=116  Identities=21%  Similarity=0.144  Sum_probs=63.6

Q ss_pred             ccccCCCCCcEEeccCCCCChHH-HHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCC
Q 015585           11 SSYYSSFNLRSLSLVLDVITDEL-LITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH   89 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~~~~~~~~-~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   89 (404)
                      ..+..+++|++|+|+++...... ...+ ..+++|++|++++|.         +.......++.+++|++|+++++.   
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~---------l~~~~p~~~~~l~~L~~L~Ls~n~---  108 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSK---------IYFLHPDAFQGLFHLFELRLYFCG---  108 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCC---------CCEECTTSSCSCSSCCCEECTTCC---
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCc---------CcccCHhHccCCcccCEeeCcCCC---
Confidence            34677888888888876332222 2223 347888888888863         333333456677777777777653   


Q ss_pred             CCCccccChhhHH-HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585           90 QGTFKRVNDMGMF-LLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS  146 (404)
Q Consensus        90 ~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  146 (404)
                            +.+..+. .....+++|++|+++++ .+........+..+++|+.|+++++.
T Consensus       109 ------l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          109 ------LSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             ------CSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             ------CCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc
Confidence                  1110000 00134567777777664 22221111224556677777776663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=1.2e-18  Score=170.43  Aligned_cols=200  Identities=17%  Similarity=0.094  Sum_probs=109.1

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      ++|++|+++++.+.......+. .+++|++|++++|.         ++......++.+++|++|+++++.      +..+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~---------l~~i~~~~~~~l~~L~~L~Ls~n~------l~~~   95 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFS-NFSELQWLDLSRCE---------IETIEDKAWHGLHHLSNLILTGNP------IQSF   95 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCC---------CCEECTTTTTTCTTCCEEECTTCC------CCCC
T ss_pred             CCcCEEECCCCCcCEeChhhcc-CCccCcEEeCCCCc---------ccccCHHHhhchhhcCEeECCCCc------cccc
Confidence            6788888887777654333343 47888888888863         333333446777888888887753      2222


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      .+..+    ..+++|++|+++++. +....... +..+++|++|+++++. +....+......+++|+.|+++++. +..
T Consensus        96 ~p~~~----~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~  167 (606)
T 3vq2_A           96 SPGSF----SGLTSLENLVAVETK-LASLESFP-IGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY-IQT  167 (606)
T ss_dssp             CTTSS----TTCTTCCEEECTTSC-CCCSSSSC-CTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC-CCE
T ss_pred             Chhhc----CCcccCCEEEccCCc-cccccccc-cCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc-cee
Confidence            22222    456788888887752 22111011 4556788888888775 2221222334467788888887764 222


Q ss_pred             ---HHHHHhhCCCC-CCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEe
Q 015585          177 ---ETVKKLASSRN-LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLC  242 (404)
Q Consensus       177 ---~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~  242 (404)
                         ..+..+..++. +++|+++++ .+.......+ ...+|+.|++++|.++..........+++++.+.
T Consensus       168 ~~~~~~~~l~~L~~~l~~L~l~~n-~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~  235 (606)
T 3vq2_A          168 ITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR  235 (606)
T ss_dssp             ECTTTTHHHHHCTTCCCEEECTTC-CCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEE
T ss_pred             cChhhhhhhhccccccceeeccCC-CcceeCcccc-cCceeeeeeccCCccchhHHHHHhcccccccccc
Confidence               22222333332 456666663 3332222222 2236666776666665444444444444444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=4.6e-17  Score=152.89  Aligned_cols=283  Identities=15%  Similarity=0.081  Sum_probs=188.0

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      .+..+++|++|+++++.++...   + ..+++|++|++++|.         ++..   .++.+++|++|+++++.     
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~---------l~~~---~~~~l~~L~~L~L~~N~-----  117 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNK---------LTNL---DVTPLTKLTYLNCDTNK-----  117 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSC---------CSCC---CCTTCTTCCEEECCSSC-----
T ss_pred             hhcccCCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCC---------Ccee---ecCCCCcCCEEECCCCc-----
Confidence            5788999999999988887632   3 458999999999974         3322   26789999999998864     


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC  171 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  171 (404)
                       +..+   .    ...+++|++|+++++ .++...    +..+++|+.|+++++..+....    ...+++|+.|+++++
T Consensus       118 -l~~l---~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n  180 (457)
T 3bz5_A          118 -LTKL---D----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN  180 (457)
T ss_dssp             -CSCC---C----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS
T ss_pred             -CCee---c----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC
Confidence             2222   1    257889999999985 443321    4567899999999985444321    346789999999987


Q ss_pred             CCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585          172 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD  251 (404)
Q Consensus       172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~  251 (404)
                      . +..  + .+..+++|++|+++++ .++..   .+..+++|+.|++++|.+++.  .  ...+++|+.|+++++. ++.
T Consensus       181 ~-l~~--l-~l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L~~L~l~~N~-l~~  247 (457)
T 3bz5_A          181 K-ITE--L-DVSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSNKLTEI--D--VTPLTQLTYFDCSVNP-LTE  247 (457)
T ss_dssp             C-CCC--C-CCTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSC-CSC
T ss_pred             c-cce--e-ccccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCCccccc--C--ccccCCCCEEEeeCCc-CCC
Confidence            5 333  1 1667899999999885 55543   367789999999999988762  2  3467899999999886 444


Q ss_pred             HHHHHHHhhcCCCCCCcc----------EEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCC--C
Q 015585          252 KGISHLLCVGGTISQSLT----------TLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP--D  319 (404)
Q Consensus       252 ~~~~~l~~~~~~~~~~L~----------~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~--~  319 (404)
                      ...        ..+++|+          .|+++++.......    ...|++|+.|++++|..++.... .. ..+.  .
T Consensus       248 ~~~--------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~-~~-~~L~~L~  313 (457)
T 3bz5_A          248 LDV--------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC-QA-AGITELD  313 (457)
T ss_dssp             CCC--------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC-TT-CCCSCCC
T ss_pred             cCH--------HHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc-CC-CcceEec
Confidence            221        2344454          44444442221111    12468888888888853221000 00 0000  0


Q ss_pred             cccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585          320 QEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       320 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      +.++++|+.|+++++ .++..   .+  ..+++|+.|++++|.+++
T Consensus       314 l~~~~~L~~L~L~~N-~l~~l---~l--~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          314 LSQNPKLVYLYLNNT-ELTEL---DV--SHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CTTCTTCCEEECTTC-CCSCC---CC--TTCTTCSEEECCSSCCCB
T ss_pred             hhhcccCCEEECCCC-ccccc---cc--ccCCcCcEEECCCCCCCC
Confidence            015788888888884 56552   23  358889999998888864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=8.5e-19  Score=172.36  Aligned_cols=141  Identities=12%  Similarity=0.044  Sum_probs=88.7

Q ss_pred             cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHH
Q 015585          234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL  313 (404)
Q Consensus       234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l  313 (404)
                      .+++++.++++.+. +..... ...    ..++.|+.|+++++..... ........+++|+.|++++|. ++...-..+
T Consensus       443 ~l~~l~~l~ls~n~-l~~~~~-~~~----~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f  514 (635)
T 4g8a_A          443 SLRNLIYLDISHTH-TRVAFN-GIF----NGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF  514 (635)
T ss_dssp             TCTTCCEEECTTSC-CEECCT-TTT----TTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred             cccccccccccccc-cccccc-ccc----ccchhhhhhhhhhcccccc-cCchhhhhccccCEEECCCCc-cCCcChHHH
Confidence            34556666665554 221111 111    3567899999988632211 011122357899999999995 553222222


Q ss_pred             HhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccc
Q 015585          314 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGC  392 (404)
Q Consensus       314 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~  392 (404)
                      .       ++++|+.|+++++ +++......+.  .+++|++|++++|.+++...+.+.   ...++++ +++.+|++.|
T Consensus       515 ~-------~l~~L~~L~Ls~N-~l~~l~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~---~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          515 N-------SLSSLQVLNMSHN-NFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQ---HFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             T-------TCTTCCEEECTTS-CCCBCCCGGGT--TCTTCCEEECTTSCCCBCCSSCTT---CCCTTCCEEECTTCCBCC
T ss_pred             c-------CCCCCCEEECCCC-cCCCCChhHHh--CCCCCCEEECCCCcCCCCCHHHHH---hhhCcCCEEEeeCCCCcc
Confidence            2       5899999999995 67654444443  589999999999999776443322   2225677 9999999999


Q ss_pred             cCC
Q 015585          393 HDG  395 (404)
Q Consensus       393 ~~~  395 (404)
                      +++
T Consensus       582 ~C~  584 (635)
T 4g8a_A          582 TCE  584 (635)
T ss_dssp             SGG
T ss_pred             cCC
Confidence            854

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=3.1e-17  Score=147.86  Aligned_cols=180  Identities=16%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             CCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh--HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCc
Q 015585          161 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD--TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI  238 (404)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L  238 (404)
                      ++|+.|+++++. +.......+..+++|++|+++++ .+..  .....+..+++|++|+++++.++....    ...++|
T Consensus       121 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~L  194 (330)
T 1xku_A          121 KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSL  194 (330)
T ss_dssp             TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS----SCCTTC
T ss_pred             ccccEEECCCCc-ccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCc----cccccC
Confidence            345555555443 22222223445555666665553 3322  112234455566666666554432100    012456


Q ss_pred             CEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCC
Q 015585          239 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP  318 (404)
Q Consensus       239 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  318 (404)
                      ++|+++++. +.......+     ..+++|++|+++++ .++......+ ..+++|+.|++++|. ++     .+...+.
T Consensus       195 ~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~-----~lp~~l~  260 (330)
T 1xku_A          195 TELHLDGNK-ITKVDAASL-----KGLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNNK-LV-----KVPGGLA  260 (330)
T ss_dssp             SEEECTTSC-CCEECTGGG-----TTCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSSC-CS-----SCCTTTT
T ss_pred             CEEECCCCc-CCccCHHHh-----cCCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCCc-Cc-----cCChhhc
Confidence            666666554 333211122     24556666666664 3332111111 235667777776664 43     1111111


Q ss_pred             CcccCCCCcEEeccCCCCCCHHHHHhhhc----CCCCcccEEecCCcccc
Q 015585          319 DQEKSKQLRRLDLCNCIGLSVDSLRWVKR----PSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       319 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~~L~~L~l~~~~l~  364 (404)
                         .+++|+.|++++| .++......+..    ...++|+.|++++|++.
T Consensus       261 ---~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          261 ---DHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             ---TCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ---cCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccc
Confidence               4667777777764 454433332211    12456777777777663

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.64  E-value=9.4e-17  Score=146.10  Aligned_cols=289  Identities=15%  Similarity=0.081  Sum_probs=145.8

Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCc
Q 015585           14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF   93 (404)
Q Consensus        14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   93 (404)
                      ..|+.....+++++.++.. +..   -.++|++|++++|         .++......+..+++|+.|+++++.      +
T Consensus        28 ~~C~~~~~c~~~~~~l~~i-P~~---~~~~L~~L~l~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~------l   88 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLNSI-PSG---LTEAVKSLDLSNN---------RITYISNSDLQRCVNLQALVLTSNG------I   88 (353)
T ss_dssp             CEECTTSEEECCSTTCSSC-CTT---CCTTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECTTSC------C
T ss_pred             CCCCCCeEeeCCCCCcccc-ccc---ccccCcEEECCCC---------cCcccCHHHhccCCCCCEEECCCCc------c
Confidence            3445555566665555421 111   1357788888775         2333333346677778888887642      1


Q ss_pred             cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585           94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL  173 (404)
Q Consensus        94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  173 (404)
                      ..+....+    ..+++|++|+++++ .++... ...+..+++|++|+++++. ++..........+++|+.|+++++..
T Consensus        89 ~~~~~~~~----~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~  161 (353)
T 2z80_A           89 NTIEEDSF----SSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDT  161 (353)
T ss_dssp             CEECTTTT----TTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred             CccCHhhc----CCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcc
Confidence            22222211    35567777777764 333211 1224456677777776663 21100000123455566666655432


Q ss_pred             CCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHH
Q 015585          174 ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKG  253 (404)
Q Consensus       174 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~  253 (404)
                      +.......+..+++|++|+++++ .+.......+..+++|++|++++|.++.... .+...+++|+.|+++++. ++...
T Consensus       162 ~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~  238 (353)
T 2z80_A          162 FTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLE-IFVDVTSSVECLELRDTD-LDTFH  238 (353)
T ss_dssp             CCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHH-HHHHHTTTEEEEEEESCB-CTTCC
T ss_pred             ccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchh-hhhhhcccccEEECCCCc-ccccc
Confidence            22211222334555555555553 3333333334445555555555554432211 112234455555554443 21110


Q ss_pred             HHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccC
Q 015585          254 ISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN  333 (404)
Q Consensus       254 ~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~  333 (404)
                      .                           ..+. .....+.++.+++.++ .+++..+..+...+.   .+++|+.|++++
T Consensus       239 ~---------------------------~~l~-~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~---~l~~L~~L~Ls~  286 (353)
T 2z80_A          239 F---------------------------SELS-TGETNSLIKKFTFRNV-KITDESLFQVMKLLN---QISGLLELEFSR  286 (353)
T ss_dssp             C---------------------------C-------CCCCCCEEEEESC-BCCHHHHHHHHHHHH---TCTTCCEEECCS
T ss_pred             c---------------------------cccc-cccccchhhccccccc-cccCcchhhhHHHHh---cccCCCEEECCC
Confidence            0                           0000 1123567788888777 477776666554333   588899999988


Q ss_pred             CCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585          334 CIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       334 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                      | .++......+  ..+++|++|++++|+++..
T Consensus       287 N-~l~~i~~~~~--~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          287 N-QLKSVPDGIF--DRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             S-CCCCCCTTTT--TTCTTCCEEECCSSCBCCC
T ss_pred             C-CCCccCHHHH--hcCCCCCEEEeeCCCccCc
Confidence            5 6663322222  2488999999999998754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.64  E-value=5.2e-17  Score=146.41  Aligned_cols=298  Identities=13%  Similarity=0.084  Sum_probs=182.7

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      .+++.++++++.+... +.   .-.+++++|++++|.         ++......++.+++|++|+++++.      +..+
T Consensus        31 c~l~~l~~~~~~l~~l-p~---~~~~~l~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~~   91 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKV-PK---DLPPDTALLDLQNNK---------ITEIKDGDFKNLKNLHTLILINNK------ISKI   91 (330)
T ss_dssp             EETTEEECTTSCCCSC-CC---SCCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSC------CCCB
T ss_pred             CCCeEEEecCCCcccc-Cc---cCCCCCeEEECCCCc---------CCEeChhhhccCCCCCEEECCCCc------CCee
Confidence            3788888887665531 11   113689999999863         443333457788999999998863      2223


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      ....+    ..+++|++|+++++ .++...    ....++|+.|+++++. ++... ......+++|+.|+++++. +..
T Consensus        92 ~~~~~----~~l~~L~~L~Ls~n-~l~~l~----~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~  159 (330)
T 1xku_A           92 SPGAF----APLVKLERLYLSKN-QLKELP----EKMPKTLQELRVHENE-ITKVR-KSVFNGLNQMIVVELGTNP-LKS  159 (330)
T ss_dssp             CTTTT----TTCTTCCEEECCSS-CCSBCC----SSCCTTCCEEECCSSC-CCBBC-HHHHTTCTTCCEEECCSSC-CCG
T ss_pred             CHHHh----cCCCCCCEEECCCC-cCCccC----hhhcccccEEECCCCc-ccccC-HhHhcCCccccEEECCCCc-CCc
Confidence            22222    46789999999885 333211    0112789999999885 33221 2234578899999998875 322


Q ss_pred             --HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHH
Q 015585          177 --ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGI  254 (404)
Q Consensus       177 --~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~  254 (404)
                        .....+..+++|++|+++++ .+.... .  ...++|++|++++|.++......+ ..+++|++|+++++. ++....
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~n-~l~~l~-~--~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~  233 (330)
T 1xku_A          160 SGIENGAFQGMKKLSYIRIADT-NITTIP-Q--GLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNS-ISAVDN  233 (330)
T ss_dssp             GGBCTTGGGGCTTCCEEECCSS-CCCSCC-S--SCCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSC-CCEECT
T ss_pred             cCcChhhccCCCCcCEEECCCC-ccccCC-c--cccccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCc-CceeCh
Confidence              11234567899999999885 444211 1  123789999999998765433222 257899999999886 544322


Q ss_pred             HHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585          255 SHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC  334 (404)
Q Consensus       255 ~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~  334 (404)
                      ..+     ..+++|++|+++++ .++.  +......+++|+.|++++|. ++......+...... ...+.|+.|++.++
T Consensus       234 ~~~-----~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~-~~~~~l~~l~l~~N  303 (330)
T 1xku_A          234 GSL-----ANTPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYN-TKKASYSGVSLFSN  303 (330)
T ss_dssp             TTG-----GGSTTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCC-TTSCCCSEEECCSS
T ss_pred             hhc-----cCCCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCCc-CCccChhhcCCcccc-cccccccceEeecC
Confidence            222     25789999999986 5542  11112357899999999985 554333222211000 02478999999985


Q ss_pred             CCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          335 IGLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       335 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                       .+....+..-.-..+++|+.+++++|+
T Consensus       304 -~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          304 -PVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -SSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             -cccccccCccccccccceeEEEecccC
Confidence             444322221122358899999999874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.62  E-value=4.4e-17  Score=148.33  Aligned_cols=212  Identities=18%  Similarity=0.112  Sum_probs=137.9

Q ss_pred             CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585           16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      .++|++|+++++.++......+ ..+++|++|++++|.         ++......++.+++|++|+++++.      +..
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------l~~  114 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNG---------INTIEEDSFSSLGSLEHLDLSYNY------LSN  114 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSC------CSS
T ss_pred             cccCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCc---------cCccCHhhcCCCCCCCEEECCCCc------CCc
Confidence            3689999999988875433334 358999999999973         444334457889999999998863      222


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      +...    ....+++|++|+++++ .++.......+..+++|+.|+++++..+.... ......+++|+.|+++++. +.
T Consensus       115 ~~~~----~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~-l~  187 (353)
T 2z80_A          115 LSSS----WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD-LQ  187 (353)
T ss_dssp             CCHH----HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT-CC
T ss_pred             CCHh----HhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCC-cC
Confidence            3322    2357899999999985 44321110135568999999999884333211 1123467899999999875 44


Q ss_pred             HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHH--hcCCCcCEEeecCCCCCcHH
Q 015585          176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA--QGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~--~~~~~L~~L~l~~~~~l~~~  252 (404)
                      ......+..+++|++|+++++ .+.......+..+++|+.|++++|.+++.....+.  ...+.++.+++.++. +.+.
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~  264 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDE  264 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHH
T ss_pred             ccCHHHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCc
Confidence            333345667899999999985 55544444455689999999999977653221111  123445555555443 4443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.58  E-value=2e-14  Score=130.85  Aligned_cols=194  Identities=21%  Similarity=0.210  Sum_probs=138.2

Q ss_pred             CCCccEEEccCCCCCCHHHHHHhh-----CCCCCCEEeccCCCCCChHHHHhhh-CCCCCCEEEccCCccCHHHHHHHHh
Q 015585          160 PCALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQ  233 (404)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~  233 (404)
                      .+.|+.|++++|. +++.....++     .+++|++|++++| .+++..+..+. .+++|++|++++|.+++.+...++.
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            4678899999876 6776666655     2368999999885 67777776654 4578899999999998888777664


Q ss_pred             ----cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCCCCCC
Q 015585          234 ----GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVT  306 (404)
Q Consensus       234 ----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~  306 (404)
                          ..++|++|++++|. +++.+...++.+. ...++|++|+++++ .+++.++..+..   .+++|+.|++++|. ++
T Consensus       149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L-~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~  224 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL-AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AG  224 (372)
T ss_dssp             HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH-HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred             HHHhcCCccceeeCCCCC-CChHHHHHHHHHH-hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence                35779999999886 8777665553110 24678999999886 688877666543   35789999999884 88


Q ss_pred             HHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCc---ccEEe--cCCccc
Q 015585          307 DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRG---LHWLG--IGQTRL  363 (404)
Q Consensus       307 ~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~---L~~L~--l~~~~l  363 (404)
                      +.+...++..+.   .+++|+.|++++| .+++.+...+.....+.   |+.+.  +.++.+
T Consensus       225 ~~g~~~l~~~L~---~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          225 DTAALALARAAR---EHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHHHHHHHHHHH---HCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             HHHHHHHHHHHH---hCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence            888877776544   5788999999884 78888887775322223   77777  677665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.58  E-value=4.7e-17  Score=146.79  Aligned_cols=296  Identities=11%  Similarity=0.060  Sum_probs=182.2

Q ss_pred             CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccC
Q 015585           18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN   97 (404)
Q Consensus        18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   97 (404)
                      +++.++++++.+... +..   ..++|++|++++|.         ++......+..+++|++|+++++.      +..+.
T Consensus        34 ~l~~l~~~~~~l~~i-p~~---~~~~l~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~~~   94 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAV-PKE---ISPDTTLLDLQNND---------ISELRKDDFKGLQHLYALVLVNNK------ISKIH   94 (332)
T ss_dssp             ETTEEECCSSCCSSC-CSC---CCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSC------CCEEC
T ss_pred             cCCEEECCCCCcccc-CCC---CCCCCeEEECCCCc---------CCccCHhHhhCCCCCcEEECCCCc------cCccC
Confidence            689999987666521 111   14689999999973         443334457889999999998863      22232


Q ss_pred             hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH
Q 015585           98 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE  177 (404)
Q Consensus        98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~  177 (404)
                      ...+    ..+++|++|+++++ .++....    ...++|++|+++++. +.... ......+++|+.|+++++. +...
T Consensus        95 ~~~~----~~l~~L~~L~L~~n-~l~~l~~----~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~  162 (332)
T 2ft3_A           95 EKAF----SPLRKLQKLYISKN-HLVEIPP----NLPSSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNP-LENS  162 (332)
T ss_dssp             GGGS----TTCTTCCEEECCSS-CCCSCCS----SCCTTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCC-CBGG
T ss_pred             HhHh----hCcCCCCEEECCCC-cCCccCc----cccccCCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCc-cccC
Confidence            2222    56789999999985 3432110    112789999999885 22111 1124578999999999875 3321


Q ss_pred             H--HHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHH
Q 015585          178 T--VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS  255 (404)
Q Consensus       178 ~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~  255 (404)
                      +  ...+..+ +|++|+++++ .+.... .  ...++|++|++++|.++......+. .+++|++|+++++. +......
T Consensus       163 ~~~~~~~~~l-~L~~L~l~~n-~l~~l~-~--~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~  235 (332)
T 2ft3_A          163 GFEPGAFDGL-KLNYLRISEA-KLTGIP-K--DLPETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQ-IRMIENG  235 (332)
T ss_dssp             GSCTTSSCSC-CCSCCBCCSS-BCSSCC-S--SSCSSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSC-CCCCCTT
T ss_pred             CCCcccccCC-ccCEEECcCC-CCCccC-c--cccCCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCc-CCcCChh
Confidence            1  1223344 8999999885 444311 1  1237899999999977654322222 57899999999886 4442222


Q ss_pred             HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585          256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI  335 (404)
Q Consensus       256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~  335 (404)
                      .+     ..+++|++|+++++ .++..  ......+++|+.|++++|. ++......+...... ...+.|+.|++.+++
T Consensus       236 ~~-----~~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~-~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          236 SL-----SFLPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFG-VKRAYYNGISLFNNP  305 (332)
T ss_dssp             GG-----GGCTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCC-SSSCCBSEEECCSSS
T ss_pred             Hh-----hCCCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCCC-CCccChhHccccccc-cccccccceEeecCc
Confidence            22     36789999999986 55521  1112467999999999985 665433333321110 025779999999964


Q ss_pred             CCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          336 GLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       336 ~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                       ++...+..-....+++|+.+++++|.
T Consensus       306 -~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          306 -VPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             -ccccccCcccccccchhhhhhccccc
Confidence             44322222222358899999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.58  E-value=6.9e-17  Score=151.47  Aligned_cols=186  Identities=15%  Similarity=0.094  Sum_probs=85.0

Q ss_pred             hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcC
Q 015585          183 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG  262 (404)
Q Consensus       183 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  262 (404)
                      ..+++|++|+++++ .+.......+..+++|++|++++|.++...... ...+++|++|+++++..+.......+     
T Consensus       109 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~~~~-----  181 (440)
T 3zyj_A          109 NGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGAF-----  181 (440)
T ss_dssp             TTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT-TTTCTTCCEEECCCCTTCCEECTTTT-----
T ss_pred             cCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHH-hhhCcccCEeCCCCCCCcceeCcchh-----
Confidence            34445555555442 333222223344455555555554433211111 11345555555554432322111111     


Q ss_pred             CCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHH
Q 015585          263 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL  342 (404)
Q Consensus       263 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~  342 (404)
                      ..+++|++|+++++ .++...  . ...+++|+.|++++|. ++......+.       .+++|+.|+++++ .++....
T Consensus       182 ~~l~~L~~L~L~~n-~l~~~~--~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~  248 (440)
T 3zyj_A          182 EGLSNLRYLNLAMC-NLREIP--N-LTPLIKLDELDLSGNH-LSAIRPGSFQ-------GLMHLQKLWMIQS-QIQVIER  248 (440)
T ss_dssp             TTCSSCCEEECTTS-CCSSCC--C-CTTCSSCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECTTC-CCCEECT
T ss_pred             hcccccCeecCCCC-cCcccc--c-cCCCcccCEEECCCCc-cCccChhhhc-------cCccCCEEECCCC-ceeEECh
Confidence            24455666666554 332111  0 1234566666666663 4322111222       3666777776663 4544333


Q ss_pred             HhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585          343 RWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       343 ~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      ..+.  .+++|+.|++++|.++......    ...+++++ +++.+|++.|++
T Consensus       249 ~~~~--~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          249 NAFD--NLQSLVEINLAHNNLTLLPHDL----FTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TSST--TCTTCCEEECTTSCCCCCCTTT----TSSCTTCCEEECCSSCEECSS
T ss_pred             hhhc--CCCCCCEEECCCCCCCccChhH----hccccCCCEEEcCCCCccCCC
Confidence            3332  3666777777777665442221    23456665 777777766664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.57  E-value=1.1e-16  Score=150.71  Aligned_cols=89  Identities=15%  Similarity=0.175  Sum_probs=42.0

Q ss_pred             CCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHH
Q 015585          291 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPV  370 (404)
Q Consensus       291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~  370 (404)
                      +++|+.|++++|. ++......+.       .+++|+.|+++++ .++......+.  .+++|+.|++++|.++......
T Consensus       217 l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          217 LVGLEELEMSGNH-FPEIRPGSFH-------GLSSLKKLWVMNS-QVSLIERNAFD--GLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             CTTCCEEECTTSC-CSEECGGGGT-------TCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCCTTS
T ss_pred             cccccEEECcCCc-CcccCccccc-------CccCCCEEEeCCC-cCceECHHHhc--CCCCCCEEECCCCcCCccChHH
Confidence            4555566665553 3322111122       3555666666653 44432222222  3556666666666654432211


Q ss_pred             HHHHHhcCCccE-EEeccccccccC
Q 015585          371 ITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       371 ~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                          ...+++++ +++.+|++.|+.
T Consensus       286 ----~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          286 ----FTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             ----STTCTTCCEEECCSSCEECST
T ss_pred             ----hccccCCCEEEccCCCcCCCC
Confidence                12345555 666666666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.57  E-value=4.1e-14  Score=128.82  Aligned_cols=195  Identities=19%  Similarity=0.239  Sum_probs=140.5

Q ss_pred             CCCCcEEEecCCCCCCHHHHHHHH---c-CCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhh
Q 015585          134 CHSLKKFEVRSASFLSDLAFHDLT---G-VPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS  208 (404)
Q Consensus       134 ~~~L~~L~l~~~~~~~~~~l~~~~---~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~  208 (404)
                      .++|+.|+++++. ++......+.   . ..++|++|++++|. +++.++..+. .+++|++|++++| .+++.+...++
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence            4789999999986 6665544432   2 23689999999875 7887777776 4678999999985 78887776653


Q ss_pred             -----CCCCCCEEEccCCccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCC
Q 015585          209 -----CLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS  280 (404)
Q Consensus       209 -----~~~~L~~L~l~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~  280 (404)
                           ..++|++|++++|.+++.+...++.   .+++|++|++++|. +++.+...+..+ -...++|++|++++| .++
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N-~i~  224 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYN-GAG  224 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSS-CCC
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCC-CCC
Confidence                 4688999999999998887776653   57889999999887 888776554321 134568999999996 888


Q ss_pred             HHHHHHHHH---hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCC--CcEEe--ccCCCCCCHH
Q 015585          281 DDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQ--LRRLD--LCNCIGLSVD  340 (404)
Q Consensus       281 ~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~--L~~L~--l~~~~~i~~~  340 (404)
                      +.+...+..   .+++|+.|++++|. +++.+...+.....    ...  |+.+.  +.. +.++..
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~----~~~~~L~~l~~ll~~-~~~~~~  285 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGG----AAEGGARVVVSLTEG-TAVSEY  285 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC----------CEEECCCC-----CHHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhc----CCCccchhhHhhhcC-CccCHH
Confidence            887666544   46899999999995 99999988887433    221  67776  544 344443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.54  E-value=2.7e-17  Score=146.94  Aligned_cols=59  Identities=17%  Similarity=0.239  Sum_probs=30.1

Q ss_pred             CCCcEEeccCCCCCh--HHHHHHHhhCCCccEEeecC-CCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585           17 FNLRSLSLVLDVITD--ELLITITASLPFLVELDLED-RPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC   85 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~--~~~~~i~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   85 (404)
                      .++++|+|+++.+..  ..+..+. .+++|++|++++ +         .+.......++.+++|++|+++++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n---------~l~~~~p~~l~~l~~L~~L~Ls~n  111 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGIN---------NLVGPIPPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEET---------TEESCCCGGGGGCTTCSEEEEEEE
T ss_pred             ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCC---------cccccCChhHhcCCCCCEEECcCC
Confidence            456666666655543  2223333 366666666663 3         122222333556666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=3.6e-16  Score=139.97  Aligned_cols=237  Identities=17%  Similarity=0.089  Sum_probs=124.3

Q ss_pred             CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccC
Q 015585           18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN   97 (404)
Q Consensus        18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   97 (404)
                      .++..+++.+.+. ..+..+...+++|++|++++|         .++......+..+++|++|+++++.      +....
T Consensus        11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~   74 (317)
T 3o53_A           11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---------PLSQISAADLAPFTKLELLNLSSNV------LYETL   74 (317)
T ss_dssp             EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTS---------CCCCCCHHHHTTCTTCCEEECTTSC------CEEEE
T ss_pred             ceeEeeccccchh-hhHHHHhccCCCCCEEECcCC---------ccCcCCHHHhhCCCcCCEEECCCCc------CCcch
Confidence            3444555555443 344555556778888988886         3444344456788888888888753      11111


Q ss_pred             hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH
Q 015585           98 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE  177 (404)
Q Consensus        98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~  177 (404)
                      +      ...+++|+.|+++++ .++.      +...++|+.|+++++. ++...    ...+++|+.|+++++. +...
T Consensus        75 ~------~~~l~~L~~L~Ls~n-~l~~------l~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N~-l~~~  135 (317)
T 3o53_A           75 D------LESLSTLRTLDLNNN-YVQE------LLVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITML  135 (317)
T ss_dssp             E------ETTCTTCCEEECCSS-EEEE------EEECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSSC-CCSG
T ss_pred             h------hhhcCCCCEEECcCC-cccc------ccCCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCCCC-CCCc
Confidence            1      256778888888875 3321      1123677777777764 22111    1235667777776654 3322


Q ss_pred             HHHHhhCCCCCCEEeccCCCCCChHHHHhh-hCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHH
Q 015585          178 TVKKLASSRNLEVLDLGGCKSIADTCLRSI-SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH  256 (404)
Q Consensus       178 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~  256 (404)
                      ....+..+++|++|+++++ .+.......+ ..+++|++|++++|.++..  .... .+++|++|++++|. ++..... 
T Consensus       136 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~-~l~~L~~L~Ls~N~-l~~l~~~-  209 (317)
T 3o53_A          136 RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLKTLDLSSNK-LAFMGPE-  209 (317)
T ss_dssp             GGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCCEEECCSSC-CCEECGG-
T ss_pred             cchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc--cccc-ccccCCEEECCCCc-CCcchhh-
Confidence            2222335566777777663 4444333333 2456677777766655432  0000 24566666666554 3321111 


Q ss_pred             HHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585          257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       257 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      +     ..+++|++|+++++ .++..  ......+++|+.|++++|+
T Consensus       210 ~-----~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          210 F-----QSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             G-----GGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCC
T ss_pred             h-----cccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCCC
Confidence            1     23455666666554 33320  0011234555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=8.6e-15  Score=141.70  Aligned_cols=267  Identities=15%  Similarity=0.074  Sum_probs=176.4

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      .+++.|+++++.++. .+..+   .++|++|++++|..         +.  +..  .+++|++|+++++.      +..+
T Consensus        40 ~~l~~L~ls~n~L~~-lp~~l---~~~L~~L~L~~N~l---------~~--lp~--~l~~L~~L~Ls~N~------l~~l   96 (622)
T 3g06_A           40 NGNAVLNVGESGLTT-LPDCL---PAHITTLVIPDNNL---------TS--LPA--LPPELRTLEVSGNQ------LTSL   96 (622)
T ss_dssp             HCCCEEECCSSCCSC-CCSCC---CTTCSEEEECSCCC---------SC--CCC--CCTTCCEEEECSCC------CSCC
T ss_pred             CCCcEEEecCCCcCc-cChhh---CCCCcEEEecCCCC---------CC--CCC--cCCCCCEEEcCCCc------CCcC
Confidence            368889998877762 12111   36899999998732         21  111  56889999998863      2223


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      ..        .+++|++|+++++ .++..     ...+++|+.|+++++. ++.     +....++|+.|++++|. +..
T Consensus        97 p~--------~l~~L~~L~Ls~N-~l~~l-----~~~l~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~  155 (622)
T 3g06_A           97 PV--------LPPGLLELSIFSN-PLTHL-----PALPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDNQ-LAS  155 (622)
T ss_dssp             CC--------CCTTCCEEEECSC-CCCCC-----CCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC
T ss_pred             CC--------CCCCCCEEECcCC-cCCCC-----CCCCCCcCEEECCCCC-CCc-----CCCCCCCCCEEECcCCc-CCC
Confidence            22        5688999999885 33321     1145789999998885 321     12245889999998875 321


Q ss_pred             HHHHHhh-CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHH
Q 015585          177 ETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS  255 (404)
Q Consensus       177 ~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~  255 (404)
                           +. ..++|+.|+++++ .++...    ..+++|+.|++++|.++.     +....++|+.|.+++|. ++.    
T Consensus       156 -----l~~~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~-l~~----  215 (622)
T 3g06_A          156 -----LPALPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNR-LTS----  215 (622)
T ss_dssp             -----CCCCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC-CSS----
T ss_pred             -----cCCccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCc-ccc----
Confidence                 22 4578999999884 554321    456889999999987764     22245789999998876 432    


Q ss_pred             HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585          256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI  335 (404)
Q Consensus       256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~  335 (404)
                       +.    ..+++|++|+++++ .++...     ..+++|+.|++++|. ++.     +..      .+++|+.|++++| 
T Consensus       216 -l~----~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N~-L~~-----lp~------~~~~L~~L~Ls~N-  271 (622)
T 3g06_A          216 -LP----ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNR-LTS-----LPM------LPSGLLSLSVYRN-  271 (622)
T ss_dssp             -CC----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSC-----CCC------CCTTCCEEECCSS-
T ss_pred             -cC----CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCCC-CCc-----CCc------ccccCcEEeCCCC-
Confidence             11    24578999999986 555311     356899999999985 542     222      3788999999995 


Q ss_pred             CCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHH
Q 015585          336 GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI  374 (404)
Q Consensus       336 ~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  374 (404)
                      .++.. ...+.  .+++|+.|++++|.+++.....+..+
T Consensus       272 ~L~~l-p~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          272 QLTRL-PESLI--HLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CCCSC-CGGGG--GSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCCcC-CHHHh--hccccCEEEecCCCCCCcCHHHHHhc
Confidence            66632 12333  48899999999999865444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.53  E-value=1.3e-15  Score=142.69  Aligned_cols=227  Identities=15%  Similarity=0.163  Sum_probs=107.1

Q ss_pred             CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585           42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK  121 (404)
Q Consensus        42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~  121 (404)
                      +++++|++++|         .++......+..+++|+.|+++++.      +..+....+    ..+++|++|+++++ .
T Consensus        64 ~~l~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~----~~l~~L~~L~L~~n-~  123 (440)
T 3zyj_A           64 TNTRLLNLHEN---------QIQIIKVNSFKHLRHLEILQLSRNH------IRTIEIGAF----NGLANLNTLELFDN-R  123 (440)
T ss_dssp             TTCSEEECCSC---------CCCEECTTTTSSCSSCCEEECCSSC------CCEECGGGG----TTCSSCCEEECCSS-C
T ss_pred             CCCcEEEccCC---------cCCeeCHHHhhCCCCCCEEECCCCc------CCccChhhc----cCCccCCEEECCCC-c
Confidence            45666666664         2333233345556666666665542      122222211    34556666666653 2


Q ss_pred             CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh
Q 015585          122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD  201 (404)
Q Consensus       122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  201 (404)
                      ++... ...+..+++|+.|+++++. +.... ...+..+++|+.|+++++..+.......+..+++|++|+++++ .+..
T Consensus       124 l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~  199 (440)
T 3zyj_A          124 LTTIP-NGAFVYLSKLKELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE  199 (440)
T ss_dssp             CSSCC-TTTSCSCSSCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS
T ss_pred             CCeeC-HhHhhccccCceeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc
Confidence            22111 0113344566666666653 21100 0112345666666666544333222223445666666666663 3331


Q ss_pred             HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCH
Q 015585          202 TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD  281 (404)
Q Consensus       202 ~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~  281 (404)
                        +..+..+++|+.|++++|.++......+ ..+++|+.|.++++. +.......+     ..+++|++|+++++ .++.
T Consensus       200 --~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~  269 (440)
T 3zyj_A          200 --IPNLTPLIKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQ-IQVIERNAF-----DNLQSLVEINLAHN-NLTL  269 (440)
T ss_dssp             --CCCCTTCSSCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTSS-----TTCTTCCEEECTTS-CCCC
T ss_pred             --ccccCCCcccCEEECCCCccCccChhhh-ccCccCCEEECCCCc-eeEEChhhh-----cCCCCCCEEECCCC-CCCc
Confidence              2234556666666666665543222111 235666666666654 333221111     24566667776664 4432


Q ss_pred             HHHHHHHHhCCCCceEeecCCC
Q 015585          282 DGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       282 ~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      .... ....+++|+.|++++|+
T Consensus       270 ~~~~-~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          270 LPHD-LFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCTT-TTSSCTTCCEEECCSSC
T ss_pred             cChh-HhccccCCCEEEcCCCC
Confidence            1111 11235666777776655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.52  E-value=2.1e-15  Score=141.84  Aligned_cols=227  Identities=16%  Similarity=0.160  Sum_probs=101.6

Q ss_pred             CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585           42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK  121 (404)
Q Consensus        42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~  121 (404)
                      +++++|++++|         .++......+..+++|+.|+++++.      +..+....+    ..+++|++|+++++ .
T Consensus        75 ~~l~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~----~~l~~L~~L~L~~n-~  134 (452)
T 3zyi_A           75 SNTRYLNLMEN---------NIQMIQADTFRHLHHLEVLQLGRNS------IRQIEVGAF----NGLASLNTLELFDN-W  134 (452)
T ss_dssp             TTCSEEECCSS---------CCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTT----TTCTTCCEEECCSS-C
T ss_pred             CCccEEECcCC---------cCceECHHHcCCCCCCCEEECCCCc------cCCcChhhc----cCcccCCEEECCCC-c
Confidence            35566666554         2222222334555566666665532      111211111    34455666666553 2


Q ss_pred             CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh
Q 015585          122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD  201 (404)
Q Consensus       122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  201 (404)
                      ++... ...+..+++|+.|+++++. +.... ...+..+++|+.|+++++..+.......+..+++|++|+++++ .+..
T Consensus       135 l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~  210 (452)
T 3zyi_A          135 LTVIP-SGAFEYLSKLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD  210 (452)
T ss_dssp             CSBCC-TTTSSSCTTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS
T ss_pred             CCccC-hhhhcccCCCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc
Confidence            22110 0112334566666666553 21100 0112345566666666544333222223345566666666653 3332


Q ss_pred             HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCH
Q 015585          202 TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD  281 (404)
Q Consensus       202 ~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~  281 (404)
                        +..+..+++|+.|++++|.++......+ ..+++|+.|+++++. +.......+     ..+++|+.|+++++ .++.
T Consensus       211 --~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~L~~N-~l~~  280 (452)
T 3zyi_A          211 --MPNLTPLVGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQ-VSLIERNAF-----DGLASLVELNLAHN-NLSS  280 (452)
T ss_dssp             --CCCCTTCTTCCEEECTTSCCSEECGGGG-TTCTTCCEEECTTSC-CCEECTTTT-----TTCTTCCEEECCSS-CCSC
T ss_pred             --cccccccccccEEECcCCcCcccCcccc-cCccCCCEEEeCCCc-CceECHHHh-----cCCCCCCEEECCCC-cCCc
Confidence              2234455666666666665543222111 235566666666554 332211111     24556666666664 3332


Q ss_pred             HHHHHHHHhCCCCceEeecCCC
Q 015585          282 DGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       282 ~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      .... ....+++|+.|++++|+
T Consensus       281 ~~~~-~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          281 LPHD-LFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CCTT-SSTTCTTCCEEECCSSC
T ss_pred             cChH-HhccccCCCEEEccCCC
Confidence            1111 11234666666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.51  E-value=7.8e-16  Score=137.78  Aligned_cols=242  Identities=19%  Similarity=0.183  Sum_probs=167.9

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      +..+++|++|+++++.+.......+. .+++|++|++++|.         ++.  ...+..+++|++|+++++.      
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~---------l~~--~~~~~~l~~L~~L~Ls~n~------   91 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNV---------LYE--TLDLESLSTLRTLDLNNNY------   91 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSC---------CEE--EEEETTCTTCCEEECCSSE------
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCc---------CCc--chhhhhcCCCCEEECcCCc------
Confidence            45677999999999888865555554 59999999999973         322  1227789999999999863      


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR  172 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  172 (404)
                         +...      ...++|+.|+++++ .++...    ...+++|+.|+++++. ++... ......+++|+.|+++++.
T Consensus        92 ---l~~l------~~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           92 ---VQEL------LVGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             ---EEEE------EECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSSC-CCSGG-GBCTGGGSSEEEEECTTSC
T ss_pred             ---cccc------cCCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCCC-CCCcc-chhhhccCCCCEEECCCCC
Confidence               2221      13489999999985 443321    1236899999999996 33211 1122357899999999975


Q ss_pred             CCCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcH
Q 015585          173 LITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD  251 (404)
Q Consensus       173 ~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~  251 (404)
                       +.......+. .+++|++|+++++ .+...  .....+++|+.|++++|.++.....  ...+++|++|++++|. ++.
T Consensus       156 -l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~-l~~  228 (317)
T 3o53_A          156 -IDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNK-LVL  228 (317)
T ss_dssp             -CCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSC-CCE
T ss_pred             -CCcccHHHHhhccCcCCEEECCCC-cCccc--ccccccccCCEEECCCCcCCcchhh--hcccCcccEEECcCCc-ccc
Confidence             4443333443 6899999999995 55433  3334589999999999987743221  3357999999999986 553


Q ss_pred             HHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCC
Q 015585          252 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSC  302 (404)
Q Consensus       252 ~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~  302 (404)
                      .  ....    ..+++|+.|+++++ .+...........+++|+.|++.++
T Consensus       229 l--~~~~----~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          229 I--EKAL----RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             E--CTTC----CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             h--hhHh----hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCc
Confidence            1  1112    46789999999996 6664455555566778888777644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.51  E-value=2e-15  Score=133.06  Aligned_cols=209  Identities=16%  Similarity=0.087  Sum_probs=134.4

Q ss_pred             CCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCC
Q 015585          134 CHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL  213 (404)
Q Consensus       134 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  213 (404)
                      .++|+.|+++++. ++... ......+++|+.|+++++. +.......+..+++|++|+++++..+.......+..+++|
T Consensus        31 ~~~l~~L~l~~n~-i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           31 PAASQRIFLHGNR-ISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             CTTCSEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCceEEEeeCCc-CCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            3689999999885 33211 1123467889999998864 4433334566788999999988533555445566778899


Q ss_pred             CEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCC
Q 015585          214 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG  293 (404)
Q Consensus       214 ~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  293 (404)
                      ++|++++|.++...... ...+++|++|+++++. +.......+     ..+++|++|+++++ .++...... ...+++
T Consensus       108 ~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~  178 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNA-LQALPDDTF-----RDLGNLTHLFLHGN-RISSVPERA-FRGLHS  178 (285)
T ss_dssp             CEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCEECTTT-TTTCTT
T ss_pred             CEEECCCCcCCEECHhH-hhCCcCCCEEECCCCc-ccccCHhHh-----ccCCCccEEECCCC-cccccCHHH-hcCccc
Confidence            99999988776432221 2357889999998876 433221112     35678888888885 454322111 124678


Q ss_pred             CceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585          294 IIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       294 L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      |+.|++++|. +++.....+.       .+++|+.|+++++ .++......+.  .+++|+.|++++|++..
T Consensus       179 L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          179 LDRLLLHQNR-VAHVHPHAFR-------DLGRLMTLYLFAN-NLSALPTEALA--PLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCEEECCSSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCCCHHHHT--TCTTCCEEECCSSCEEC
T ss_pred             cCEEECCCCc-ccccCHhHcc-------CcccccEeeCCCC-cCCcCCHHHcc--cCcccCEEeccCCCccC
Confidence            8888888885 5433222232       4788888888884 56654444443  47888888888888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.50  E-value=5.1e-14  Score=132.02  Aligned_cols=116  Identities=18%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCC
Q 015585          109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL  188 (404)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  188 (404)
                      ++|++|+++++ .++.  +.. +..+++|+.|+++++. ++.     +....++|+.|+++++. +.  .+..+..+++|
T Consensus       173 ~~L~~L~L~~n-~l~~--l~~-~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n~-l~--~lp~~~~l~~L  239 (454)
T 1jl5_A          173 PSLEFIAAGNN-QLEE--LPE-LQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNNI-LE--ELPELQNLPFL  239 (454)
T ss_dssp             TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSSC-CS--SCCCCTTCTTC
T ss_pred             ccccEEECcCC-cCCc--Ccc-ccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCCc-CC--cccccCCCCCC
Confidence            35556665553 2221  111 3445566666665553 111     01122456666665553 22  11124455666


Q ss_pred             CEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       189 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      ++|+++++ .+..  +..  ..++|+.|++++|.++.     +....++|++|++++|.
T Consensus       240 ~~L~l~~N-~l~~--l~~--~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N~  288 (454)
T 1jl5_A          240 TTIYADNN-LLKT--LPD--LPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSENI  288 (454)
T ss_dssp             CEEECCSS-CCSS--CCS--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC
T ss_pred             CEEECCCC-cCCc--ccc--cccccCEEECCCCcccc-----cCcccCcCCEEECcCCc
Confidence            66666553 3321  110  12455555555554432     11123455555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.50  E-value=6.8e-16  Score=139.16  Aligned_cols=269  Identities=15%  Similarity=0.090  Sum_probs=176.4

Q ss_pred             CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585           16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      .++|++|+++++.+.......+ ..+++|++|++++|         .++......++.+++|++|+++++.      +..
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~------l~~  116 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNN---------KISKIHEKAFSPLRKLQKLYISKNH------LVE  116 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS---------CCCEECGGGSTTCTTCCEEECCSSC------CCS
T ss_pred             CCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCC---------ccCccCHhHhhCcCCCCEEECCCCc------CCc
Confidence            4789999999988875433334 35899999999997         3444444567899999999998864      222


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHH-HHHHcCCCCccEEEccCCCCC
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAF-HDLTGVPCALVEVRLLWCRLI  174 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~  174 (404)
                      +...       ..++|++|+++++ .++... ...+..+++|+.|+++++. ++.... ......+ +|+.|+++++. +
T Consensus       117 l~~~-------~~~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~-l  184 (332)
T 2ft3_A          117 IPPN-------LPSSLVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK-L  184 (332)
T ss_dssp             CCSS-------CCTTCCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB-C
T ss_pred             cCcc-------ccccCCEEECCCC-ccCccC-HhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC-C
Confidence            3221       2279999999985 443211 1124568999999999986 322111 1122233 89999998875 3


Q ss_pred             CHHHHHHhh--CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          175 TSETVKKLA--SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       175 ~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                      ..     +.  ..++|++|+++++ .+.......+..+++|+.|++++|.++......+ ..+++|++|++++|. ++..
T Consensus       185 ~~-----l~~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l  256 (332)
T 2ft3_A          185 TG-----IPKDLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNK-LSRV  256 (332)
T ss_dssp             SS-----CCSSSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSC-CCBC
T ss_pred             Cc-----cCccccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCc-Ceec
Confidence            22     22  2478999999984 6666555667788999999999997765322222 358999999999886 5421


Q ss_pred             HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh-----CCCCceEeecCCCCCCHHHH--HHHHhhCCCcccCCC
Q 015585          253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA-----GIGIIDLCVRSCFYVTDASV--EALARKQPDQEKSKQ  325 (404)
Q Consensus       253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-----~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~~~~~~~  325 (404)
                        ....    ..+++|++|+++++ .++..+...+...     .+.|+.|++.+|+ +....+  ..+.       .+++
T Consensus       257 --p~~l----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~-------~l~~  321 (332)
T 2ft3_A          257 --PAGL----PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFR-------CVTD  321 (332)
T ss_dssp             --CTTG----GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGT-------TBCC
T ss_pred             --Chhh----hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCccccc-------ccch
Confidence              1112    36789999999985 5654333222211     4678999999997 432111  1222       5889


Q ss_pred             CcEEeccCCC
Q 015585          326 LRRLDLCNCI  335 (404)
Q Consensus       326 L~~L~l~~~~  335 (404)
                      |+.++++++.
T Consensus       322 L~~l~l~~n~  331 (332)
T 2ft3_A          322 RLAIQFGNYK  331 (332)
T ss_dssp             STTEEC----
T ss_pred             hhhhhccccc
Confidence            9999998863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.49  E-value=1.5e-16  Score=141.86  Aligned_cols=258  Identities=15%  Similarity=0.130  Sum_probs=162.6

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHH-HHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCC
Q 015585          109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLA-FHDLTGVPCALVEVRLLWCRLITSETVKKLASSRN  187 (404)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  187 (404)
                      ++|++|+++++ .++... ...+..+++|+.|+++++. ++... .......+++|+.|+++++. +.. ....+..+++
T Consensus        28 ~~l~~L~L~~n-~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~-l~~~~~~l~~  102 (306)
T 2z66_A           28 SSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VIT-MSSNFLGLEQ  102 (306)
T ss_dssp             TTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-EEE-EEEEEETCTT
T ss_pred             CCCCEEECCCC-ccCccC-HhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCc-ccc-ChhhcCCCCC
Confidence            68999999985 443211 1224677999999999986 33211 01122267999999999875 221 1112457899


Q ss_pred             CCEEeccCCCCCChHH-HHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCC
Q 015585          188 LEVLDLGGCKSIADTC-LRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ  266 (404)
Q Consensus       188 L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~  266 (404)
                      |++|+++++ .+.... ...+..+++|++|++++|.++...... ...+++|++|+++++. +....+....    ..++
T Consensus       103 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~----~~l~  175 (306)
T 2z66_A          103 LEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNS-FQENFLPDIF----TELR  175 (306)
T ss_dssp             CCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCE-EGGGEECSCC----TTCT
T ss_pred             CCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCc-cccccchhHH----hhCc
Confidence            999999985 444332 245678899999999998765432222 2357899999999886 4432111222    4678


Q ss_pred             CccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh
Q 015585          267 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK  346 (404)
Q Consensus       267 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~  346 (404)
                      +|++|+++++ .++......+ ..+++|+.|++++|. ++......+.       .+++|+.|++++| .++......+.
T Consensus       176 ~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~  244 (306)
T 2z66_A          176 NLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHNN-FFSLDTFPYK-------CLNSLQVLDYSLN-HIMTSKKQELQ  244 (306)
T ss_dssp             TCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-CSBCCSGGGT-------TCTTCCEEECTTS-CCCBCSSSSCC
T ss_pred             CCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCCc-cCccChhhcc-------CcccCCEeECCCC-CCcccCHHHHH
Confidence            9999999986 5554222222 356899999999985 5432222222       5889999999995 66654443343


Q ss_pred             cCCC-CcccEEecCCccccCC-ChHHHHHHHhcCCccEEEecccccccc
Q 015585          347 RPSF-RGLHWLGIGQTRLASK-GNPVITEIHNERPWLTFCLDGCEIGCH  393 (404)
Q Consensus       347 ~~~~-~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~~l~l~~~~~~~~~~  393 (404)
                        .+ ++|++|++++|.++.. ....+..+.+..+.+  .+..+...|.
T Consensus       245 --~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~--~~~~~~~~C~  289 (306)
T 2z66_A          245 --HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL--LVEVERMECA  289 (306)
T ss_dssp             --CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGG--BSCGGGCBEE
T ss_pred             --hhhccCCEEEccCCCeecccChHHHHHHHHhhhhh--hccccccccC
Confidence              35 4899999999998753 223334444444443  2334455554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.48  E-value=1.5e-14  Score=127.39  Aligned_cols=204  Identities=18%  Similarity=0.143  Sum_probs=101.5

Q ss_pred             CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585           42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK  121 (404)
Q Consensus        42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~  121 (404)
                      ++|++|+++++         .++......+..+++|++|+++++.      +..+....+    ..+++|++|+++++..
T Consensus        32 ~~l~~L~l~~n---------~i~~~~~~~~~~~~~L~~L~l~~n~------l~~~~~~~~----~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           32 AASQRIFLHGN---------RISHVPAASFRACRNLTILWLHSNV------LARIDAAAF----TGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             TTCSEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CCEECTTTT----TTCTTCCEEECCSCTT
T ss_pred             CCceEEEeeCC---------cCCccCHHHcccCCCCCEEECCCCc------cceeCHhhc----CCccCCCEEeCCCCCC
Confidence            45666666654         2222222334555666666665532      111211111    3455666666665421


Q ss_pred             CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh
Q 015585          122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD  201 (404)
Q Consensus       122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  201 (404)
                      ++.... ..+..+++|+.|+++++.. +... ......+++|+.|+++++. +.......+..+++|++|+++++ .++.
T Consensus        93 l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~  167 (285)
T 1ozn_A           93 LRSVDP-ATFHGLGRLHTLHLDRCGL-QELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISS  167 (285)
T ss_dssp             CCCCCT-TTTTTCTTCCEEECTTSCC-CCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCE
T ss_pred             ccccCH-HHhcCCcCCCEEECCCCcC-CEEC-HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccc
Confidence            222111 1133456666666666531 1100 1122345667777776654 22222223445677777777763 4544


Q ss_pred             HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC
Q 015585          202 TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM  276 (404)
Q Consensus       202 ~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~  276 (404)
                      .....+..+++|+.|++++|.+++.....+. .+++|+.|+++++. ++......+     ..+++|++|+++++
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRLMTLYLFANN-LSALPTEAL-----APLRALQYLRLNDN  235 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC-CSCCCHHHH-----TTCTTCCEEECCSS
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHcc-CcccccEeeCCCCc-CCcCCHHHc-----ccCcccCEEeccCC
Confidence            3333455667777777777766543222222 35677777777765 443322222     25667777777775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.48  E-value=4.1e-13  Score=125.85  Aligned_cols=239  Identities=17%  Similarity=0.083  Sum_probs=126.6

Q ss_pred             CCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHH
Q 015585           75 HHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFH  154 (404)
Q Consensus        75 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~  154 (404)
                      ++|++|+++++.      +..+.     . ...+++|++|+++++ .++.  +.   ...++|+.|+++++. ++.  +.
T Consensus       131 ~~L~~L~L~~n~------l~~lp-----~-~~~l~~L~~L~l~~N-~l~~--lp---~~~~~L~~L~L~~n~-l~~--l~  189 (454)
T 1jl5_A          131 PLLEYLGVSNNQ------LEKLP-----E-LQNSSFLKIIDVDNN-SLKK--LP---DLPPSLEFIAAGNNQ-LEE--LP  189 (454)
T ss_dssp             TTCCEEECCSSC------CSSCC-----C-CTTCTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSC-CSS--CC
T ss_pred             CCCCEEECcCCC------CCCCc-----c-cCCCCCCCEEECCCC-cCcc--cC---CCcccccEEECcCCc-CCc--Cc
Confidence            467777776643      11222     1 245677777777764 3321  11   122477777777764 222  11


Q ss_pred             HHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHh
Q 015585          155 DLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQ  233 (404)
Q Consensus       155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~  233 (404)
                      . ...+++|+.|+++++. +..     +. ..++|++|+++++ .+.  .+..+..+++|++|++++|.++.     +..
T Consensus       190 ~-~~~l~~L~~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n-~l~--~lp~~~~l~~L~~L~l~~N~l~~-----l~~  254 (454)
T 1jl5_A          190 E-LQNLPFLTAIYADNNS-LKK-----LPDLPLSLESIVAGNN-ILE--ELPELQNLPFLTTIYADNNLLKT-----LPD  254 (454)
T ss_dssp             C-CTTCTTCCEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCS--SCCCCTTCTTCCEEECCSSCCSS-----CCS
T ss_pred             c-ccCCCCCCEEECCCCc-CCc-----CCCCcCcccEEECcCC-cCC--cccccCCCCCCCEEECCCCcCCc-----ccc
Confidence            1 3466777777777764 221     11 2357788888774 444  22346677888888888887653     122


Q ss_pred             cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHH
Q 015585          234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEAL  313 (404)
Q Consensus       234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l  313 (404)
                      ..++|+.|++++|. +..     +.    ..+++|++|+++++ .++..     ....++|+.|++++|. ++.     +
T Consensus       255 ~~~~L~~L~l~~N~-l~~-----l~----~~~~~L~~L~ls~N-~l~~l-----~~~~~~L~~L~l~~N~-l~~-----i  312 (454)
T 1jl5_A          255 LPPSLEALNVRDNY-LTD-----LP----ELPQSLTFLDVSEN-IFSGL-----SELPPNLYYLNASSNE-IRS-----L  312 (454)
T ss_dssp             CCTTCCEEECCSSC-CSC-----CC----CCCTTCCEEECCSS-CCSEE-----SCCCTTCCEEECCSSC-CSE-----E
T ss_pred             cccccCEEECCCCc-ccc-----cC----cccCcCCEEECcCC-ccCcc-----cCcCCcCCEEECcCCc-CCc-----c
Confidence            35778888888776 332     11    23457777777775 33321     0112466666666663 332     1


Q ss_pred             HhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccc
Q 015585          314 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGC  392 (404)
Q Consensus       314 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~  392 (404)
                      ..      ..++|+.|+++++ .++.     +. ..+++|+.|++++|.++....        ..+.++ +++.+|.+..
T Consensus       313 ~~------~~~~L~~L~Ls~N-~l~~-----lp-~~~~~L~~L~L~~N~l~~lp~--------~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          313 CD------LPPSLEELNVSNN-KLIE-----LP-ALPPRLERLIASFNHLAEVPE--------LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CC------CCTTCCEEECCSS-CCSC-----CC-CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSS
T ss_pred             cC------CcCcCCEEECCCC-cccc-----cc-ccCCcCCEEECCCCccccccc--------hhhhccEEECCCCCCCc
Confidence            11      1135666666653 3332     11 124556666666655543311        234454 5555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.47  E-value=1.4e-15  Score=149.38  Aligned_cols=140  Identities=16%  Similarity=0.092  Sum_probs=91.3

Q ss_pred             hhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH
Q 015585          207 ISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT  286 (404)
Q Consensus       207 l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  286 (404)
                      +..+++++.++++.+.+..... .....++.++.|+++++..... ......    ..+++|++|+++++ .++......
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~-~~~~~~----~~l~~L~~L~Ls~N-~L~~l~~~~  513 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQEN-FLPDIF----TELRNLTFLDLSQC-QLEQLSPTA  513 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGG-EECSCC----TTCTTCCEEECTTS-CCCEECTTT
T ss_pred             cccccccccccccccccccccc-cccccchhhhhhhhhhcccccc-cCchhh----hhccccCEEECCCC-ccCCcChHH
Confidence            3456778888888775432211 1223578999999998862221 111112    46789999999997 555422112


Q ss_pred             HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCC-CcccEEecCCccccC
Q 015585          287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSF-RGLHWLGIGQTRLAS  365 (404)
Q Consensus       287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~-~~L~~L~l~~~~l~~  365 (404)
                       ...+++|+.|+|++|. ++......+.       ++++|+.|++++ +.++......+.  .+ ++|+.|++++|++.=
T Consensus       514 -f~~l~~L~~L~Ls~N~-l~~l~~~~~~-------~l~~L~~L~Ls~-N~l~~~~~~~l~--~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          514 -FNSLSSLQVLNMSHNN-FFSLDTFPYK-------CLNSLQVLDYSL-NHIMTSKKQELQ--HFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             -TTTCTTCCEEECTTSC-CCBCCCGGGT-------TCTTCCEEECTT-SCCCBCCSSCTT--CCCTTCCEEECTTCCBCC
T ss_pred             -HcCCCCCCEEECCCCc-CCCCChhHHh-------CCCCCCEEECCC-CcCCCCCHHHHH--hhhCcCCEEEeeCCCCcc
Confidence             2357999999999995 5532222233       589999999999 467654444443  34 689999999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.46  E-value=8.9e-14  Score=110.54  Aligned_cols=112  Identities=15%  Similarity=0.267  Sum_probs=65.9

Q ss_pred             CccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh
Q 015585          267 SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK  346 (404)
Q Consensus       267 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~  346 (404)
                      .|++|++++|. +++.++..+ ..|++|++|+|++|..++|.++..++....   .+++|+.|++++|..||+.++..+.
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~---~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLEN---LQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHH---HHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhccc---ccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            46666666663 666666555 356666666666666666666666664100   0345666666666666666666665


Q ss_pred             cCCCCcccEEecCCccccCCChHHHHHHHhcCCccEEEe
Q 015585          347 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCL  385 (404)
Q Consensus       347 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~  385 (404)
                        .+++|++|++++|.-.+....++..+.+..|.+++.+
T Consensus       137 --~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~  173 (176)
T 3e4g_A          137 --HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL  173 (176)
T ss_dssp             --GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred             --cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence              3666666666666533222234556666777766554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.46  E-value=2.9e-15  Score=134.57  Aligned_cols=225  Identities=21%  Similarity=0.248  Sum_probs=115.1

Q ss_pred             CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585           41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS  120 (404)
Q Consensus        41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~  120 (404)
                      .+++++|+++++.         ++ .....+..+++|++|+++++.      +..+..     ....+++|++|+++++ 
T Consensus        80 ~~~l~~L~L~~n~---------l~-~lp~~l~~l~~L~~L~L~~n~------l~~lp~-----~~~~l~~L~~L~Ls~n-  137 (328)
T 4fcg_A           80 QPGRVALELRSVP---------LP-QFPDQAFRLSHLQHMTIDAAG------LMELPD-----TMQQFAGLETLTLARN-  137 (328)
T ss_dssp             STTCCEEEEESSC---------CS-SCCSCGGGGTTCSEEEEESSC------CCCCCS-----CGGGGTTCSEEEEESC-
T ss_pred             ccceeEEEccCCC---------ch-hcChhhhhCCCCCEEECCCCC------ccchhH-----HHhccCCCCEEECCCC-
Confidence            3566666666642         22 111224456666666666542      111111     1134566666666663 


Q ss_pred             CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHH--H-----HHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEec
Q 015585          121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLA--F-----HDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDL  193 (404)
Q Consensus       121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  193 (404)
                      .++  .+...+..+++|+.|++++|.......  +     ......+++|+.|+++++. +. .....+..+++|++|++
T Consensus       138 ~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L  213 (328)
T 4fcg_A          138 PLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKI  213 (328)
T ss_dssp             CCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEE
T ss_pred             ccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEc
Confidence            332  122224456666666666643221100  0     0001236777777777764 32 11123556777888888


Q ss_pred             cCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEec
Q 015585          194 GGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDL  273 (404)
Q Consensus       194 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l  273 (404)
                      +++ .+.. ....+..+++|++|++++|.+....... ...+++|++|++++|...+.. ...+     ..+++|++|++
T Consensus       214 ~~N-~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~-p~~~-----~~l~~L~~L~L  284 (328)
T 4fcg_A          214 RNS-PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTL-PLDI-----HRLTQLEKLDL  284 (328)
T ss_dssp             ESS-CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBC-CTTG-----GGCTTCCEEEC
T ss_pred             cCC-CCCc-CchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhc-chhh-----hcCCCCCEEeC
Confidence            774 4442 2234566777888888776544321111 224677888888777533221 1112     25678888888


Q ss_pred             CCCCCCCHHHHHHHHHhCCCCceEeecCC
Q 015585          274 GYMPGISDDGILTIAAAGIGIIDLCVRSC  302 (404)
Q Consensus       274 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~  302 (404)
                      ++|+...... . ....+++|+.+.+..+
T Consensus       285 ~~n~~~~~iP-~-~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          285 RGCVNLSRLP-S-LIAQLPANCIILVPPH  311 (328)
T ss_dssp             TTCTTCCCCC-G-GGGGSCTTCEEECCGG
T ss_pred             CCCCchhhcc-H-HHhhccCceEEeCCHH
Confidence            8864333211 1 1234677888877654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.45  E-value=4.5e-17  Score=145.49  Aligned_cols=185  Identities=16%  Similarity=0.116  Sum_probs=90.4

Q ss_pred             hhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCC-CcCEEeecCCCCCcHHHHHHHHhh
Q 015585          182 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNL-PIMNLCLRGCKRVTDKGISHLLCV  260 (404)
Q Consensus       182 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~  260 (404)
                      +..+++|++|+++++ .+.......+..+++|++|++++|.+++.....+. .++ +|++|+++++. +.......+.  
T Consensus       121 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~-l~~~~~~~~~--  195 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNR-LTGKIPPTFA--  195 (313)
T ss_dssp             GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSE-EEEECCGGGG--
T ss_pred             HhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCe-eeccCChHHh--
Confidence            334455555555542 33322223344455555555555544322111122 223 55555555543 2211111111  


Q ss_pred             cCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHH
Q 015585          261 GGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD  340 (404)
Q Consensus       261 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~  340 (404)
                         .++ |++|+++++ .++.... .....+++|+.|++++|. ++...- .+    .   .+++|+.|++++| .++..
T Consensus       196 ---~l~-L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-~~----~---~l~~L~~L~Ls~N-~l~~~  259 (313)
T 1ogq_A          196 ---NLN-LAFVDLSRN-MLEGDAS-VLFGSDKNTQKIHLAKNS-LAFDLG-KV----G---LSKNLNGLDLRNN-RIYGT  259 (313)
T ss_dssp             ---GCC-CSEEECCSS-EEEECCG-GGCCTTSCCSEEECCSSE-ECCBGG-GC----C---CCTTCCEEECCSS-CCEEC
T ss_pred             ---CCc-ccEEECcCC-cccCcCC-HHHhcCCCCCEEECCCCc-eeeecC-cc----c---ccCCCCEEECcCC-cccCc
Confidence               222 666666654 2221111 111235677777777764 331100 01    1   4678888888874 55433


Q ss_pred             HHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEeccccccccC
Q 015585          341 SLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD  394 (404)
Q Consensus       341 ~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~~  394 (404)
                      ....+.  .+++|++|++++|.+++.-..    . ..++.++ +++.+|+.-|..
T Consensus       260 ~p~~l~--~l~~L~~L~Ls~N~l~~~ip~----~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          260 LPQGLT--QLKFLHSLNVSFNNLCGEIPQ----G-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCGGGG--GCTTCCEEECCSSEEEEECCC----S-TTGGGSCGGGTCSSSEEEST
T ss_pred             CChHHh--cCcCCCEEECcCCcccccCCC----C-ccccccChHHhcCCCCccCC
Confidence            333333  377888888888887643111    1 4567777 778888776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.44  E-value=4.6e-15  Score=132.15  Aligned_cols=229  Identities=17%  Similarity=0.111  Sum_probs=153.9

Q ss_pred             CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhh--hhhhcCCCCCceEEecccccCCCCCc
Q 015585           16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG--LQSLGSCHHLTGLSLTRCRHNHQGTF   93 (404)
Q Consensus        16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~   93 (404)
                      .++|++|+++++.+... ...+...+++|++|++++|.         ++..+  ...+..+++|++|+++++.      +
T Consensus        27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n~------i   90 (306)
T 2z66_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNG---------LSFKGCCSQSDFGTTSLKYLDLSFNG------V   90 (306)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC---------CCEEEEEEHHHHSCSCCCEEECCSCS------E
T ss_pred             CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCc---------cCcccCcccccccccccCEEECCCCc------c
Confidence            36899999998887742 23333458999999999973         33221  2334578999999998863      1


Q ss_pred             cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585           94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL  173 (404)
Q Consensus        94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  173 (404)
                      ..+...     ...+++|++|+++++ .++.......+..+++|+.|+++++.. ... .......+++|+.|+++++. 
T Consensus        91 ~~l~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~-  161 (306)
T 2z66_A           91 ITMSSN-----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT-RVA-FNGIFNGLSSLEVLKMAGNS-  161 (306)
T ss_dssp             EEEEEE-----EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCC-EEC-STTTTTTCTTCCEEECTTCE-
T ss_pred             ccChhh-----cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcC-Ccc-chhhcccCcCCCEEECCCCc-
Confidence            222211     246789999999985 332221112256679999999999852 211 11223467899999999875 


Q ss_pred             CCH-HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          174 ITS-ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       174 ~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                      +.. .....+..+++|++|+++++ .+.......+..+++|+.|++++|.+++..... ...+++|++|++++|. +...
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~  238 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNH-IMTS  238 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSC-CCBC
T ss_pred             cccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCC-Cccc
Confidence            332 11223557899999999995 666655566778999999999999776532222 2357999999999987 5443


Q ss_pred             HHHHHHhhcCCCC-CCccEEecCCCC
Q 015585          253 GISHLLCVGGTIS-QSLTTLDLGYMP  277 (404)
Q Consensus       253 ~~~~l~~~~~~~~-~~L~~L~l~~~~  277 (404)
                      ....+.     .+ ++|++|++++++
T Consensus       239 ~~~~~~-----~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          239 KKQELQ-----HFPSSLAFLNLTQND  259 (306)
T ss_dssp             SSSSCC-----CCCTTCCEEECTTCC
T ss_pred             CHHHHH-----hhhccCCEEEccCCC
Confidence            322222     34 589999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.44  E-value=1.1e-13  Score=109.93  Aligned_cols=106  Identities=20%  Similarity=0.208  Sum_probs=77.9

Q ss_pred             CCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCCCCCCHHHHHH
Q 015585          236 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEA  312 (404)
Q Consensus       236 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~  312 (404)
                      .+|++|++++|. +++.++..+.     .+++|++|++++|..++|.++..+..   .+++|++|++++|..+||.++..
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            357777777776 7777776664     67788888888887788888777764   24678888888888888888888


Q ss_pred             HHhhCCCcccCCCCcEEeccCCCCCCHHHH--HhhhcCCCCcccE
Q 015585          313 LARKQPDQEKSKQLRRLDLCNCIGLSVDSL--RWVKRPSFRGLHW  355 (404)
Q Consensus       313 l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~--~~l~~~~~~~L~~  355 (404)
                      ++.       +++|+.|++++|+.+++.+.  ..+. ..+|+++.
T Consensus       135 L~~-------~~~L~~L~L~~c~~Itd~gl~~~~L~-~~lP~l~V  171 (176)
T 3e4g_A          135 LHH-------FRNLKYLFLSDLPGVKEKEKIVQAFK-TSLPSLEL  171 (176)
T ss_dssp             GGG-------CTTCCEEEEESCTTCCCHHHHHHHHH-HHCTTCEE
T ss_pred             Hhc-------CCCCCEEECCCCCCCCchHHHHHHHH-HHCCCcEE
Confidence            774       78888888888888887653  3333 34666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.43  E-value=3.4e-14  Score=126.80  Aligned_cols=229  Identities=18%  Similarity=0.142  Sum_probs=147.1

Q ss_pred             CcEEeccCCCCCh-----HHHHH-H-HhhCCCccEEeecCCCCCCcccccccchhhhhhh--cCCCCCceEEecccccCC
Q 015585           19 LRSLSLVLDVITD-----ELLIT-I-TASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL--GSCHHLTGLSLTRCRHNH   89 (404)
Q Consensus        19 L~~L~L~~~~~~~-----~~~~~-i-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~   89 (404)
                      |+.|+++++.+..     ..... + ...+++|++|++++|         .++......+  +.+++|++|+++++.   
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n---------~l~~~~~~~~~~~~l~~L~~L~Ls~N~---  132 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL---------EVTGTAPPPLLEATGPDLNILNLRNVS---  132 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE---------BCBSCCCCCSSSCCSCCCSEEEEESCB---
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC---------cccchhHHHHHHhcCCCccEEEccCCC---
Confidence            7777777655532     11111 1 114899999999996         3433333333  788999999999864   


Q ss_pred             CCCccccChhhHHHHHhc-CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHH--cCCCCccEE
Q 015585           90 QGTFKRVNDMGMFLLSEG-CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLT--GVPCALVEV  166 (404)
Q Consensus        90 ~~~~~~~~~~~l~~l~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~--~~~~~L~~L  166 (404)
                         +..+ +..+..+... .++|++|+++++ .++.... ..+..+++|+.|+++++.......+....  ..+++|+.|
T Consensus       133 ---l~~~-~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L  206 (312)
T 1wwl_A          133 ---WATR-DAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL  206 (312)
T ss_dssp             ---CSSS-SSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE
T ss_pred             ---Ccch-hHHHHHHHHhhcCCCcEEEeeCC-CCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE
Confidence               2233 2334333222 389999999985 3332211 12456789999999999743333333333  678999999


Q ss_pred             EccCCCCCC--HHHHHHhhCCCCCCEEeccCCCCCChHH-HHhhhCCCCCCEEEccCCccCHHHHHHHHhc-CCCcCEEe
Q 015585          167 RLLWCRLIT--SETVKKLASSRNLEVLDLGGCKSIADTC-LRSISCLRKLTALNLTGADITDSGLSILAQG-NLPIMNLC  242 (404)
Q Consensus       167 ~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~-~~~L~~L~  242 (404)
                      +++++....  ......+..+++|++|+++++ .+.... ...+..+++|++|++++|.++.     +... .++|++|+
T Consensus       207 ~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~~L~~L~  280 (312)
T 1wwl_A          207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-----VPKGLPAKLSVLD  280 (312)
T ss_dssp             ECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCSS-----CCSSCCSEEEEEE
T ss_pred             ECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccCh-----hhhhccCCceEEE
Confidence            999986332  222223347899999999984 555533 2344567899999999998762     1211 26899999


Q ss_pred             ecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCC
Q 015585          243 LRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS  280 (404)
Q Consensus       243 l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~  280 (404)
                      ++++. ++..  .. .    ..+++|++|++++. .++
T Consensus       281 Ls~N~-l~~~--p~-~----~~l~~L~~L~L~~N-~l~  309 (312)
T 1wwl_A          281 LSYNR-LDRN--PS-P----DELPQVGNLSLKGN-PFL  309 (312)
T ss_dssp             CCSSC-CCSC--CC-T----TTSCEEEEEECTTC-TTT
T ss_pred             CCCCC-CCCC--hh-H----hhCCCCCEEeccCC-CCC
Confidence            99987 5543  11 2    46889999999985 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=2.3e-14  Score=135.72  Aligned_cols=214  Identities=19%  Similarity=0.112  Sum_probs=110.7

Q ss_pred             CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585           42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK  121 (404)
Q Consensus        42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~  121 (404)
                      ++|++|++++|.         ++......++.+++|++|+++++.      +....+      ...+++|+.|+++++ .
T Consensus        34 ~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~------l~~l~~L~~L~Ls~N-~   91 (487)
T 3oja_A           34 WNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNV------LYETLD------LESLSTLRTLDLNNN-Y   91 (487)
T ss_dssp             GGCCEEECCSSC---------CCCCCGGGGTTCTTCCEEECTTSC------CEEEEE------CTTCTTCCEEECCSS-E
T ss_pred             CCccEEEeeCCc---------CCCCCHHHHhCCCCCCEEEeeCCC------CCCCcc------cccCCCCCEEEecCC-c
Confidence            467777777752         333333445677777777777643      111111      245667777777764 3


Q ss_pred             CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCCh
Q 015585          122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD  201 (404)
Q Consensus       122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  201 (404)
                      ++.      +...++|+.|+++++. ++...    ...+++|+.|+++++. +.......+..+++|++|+++++ .++.
T Consensus        92 l~~------l~~~~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~  158 (487)
T 3oja_A           92 VQE------LLVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDT  158 (487)
T ss_dssp             EEE------EEECTTCCEEECCSSC-CCCEE----ECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCE
T ss_pred             CCC------CCCCCCcCEEECcCCc-CCCCC----ccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCC
Confidence            221      1122667777777664 22111    1234667777776654 33222223345667777777663 5554


Q ss_pred             HHHHhhh-CCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCC
Q 015585          202 TCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS  280 (404)
Q Consensus       202 ~~~~~l~-~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~  280 (404)
                      .....+. .+++|+.|++++|.+++.  .... .+++|+.|++++|. ++..... +     ..+++|+.|+++++ .++
T Consensus       159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~-~l~~L~~L~Ls~N~-l~~~~~~-~-----~~l~~L~~L~Ls~N-~l~  227 (487)
T 3oja_A          159 VNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLKTLDLSSNK-LAFMGPE-F-----QSAAGVTWISLRNN-KLV  227 (487)
T ss_dssp             EEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCCEEECCSSC-CCEECGG-G-----GGGTTCSEEECTTS-CCC
T ss_pred             cChHHHhhhCCcccEEecCCCccccc--cccc-cCCCCCEEECCCCC-CCCCCHh-H-----cCCCCccEEEecCC-cCc
Confidence            4444443 566777777777665532  1111 35666777776665 3321111 1     24556666666664 343


Q ss_pred             HHHHHHHHHhCCCCceEeecCCC
Q 015585          281 DDGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       281 ~~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      .  +......+++|+.|++++|+
T Consensus       228 ~--lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          228 L--IEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             E--ECTTCCCCTTCCEEECTTCC
T ss_pred             c--cchhhccCCCCCEEEcCCCC
Confidence            2  11111234566666666664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.42  E-value=8.7e-15  Score=128.30  Aligned_cols=207  Identities=15%  Similarity=0.042  Sum_probs=115.6

Q ss_pred             CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585          135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT  214 (404)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  214 (404)
                      ++|+.|+++++. ++.... .....+++|+.|+++++. +.......+..+++|++|+++++ .+.......+..+++|+
T Consensus        28 ~~l~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  103 (276)
T 2z62_A           28 FSTKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ  103 (276)
T ss_dssp             TTCCEEECTTCC-CCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCC
T ss_pred             CCccEEECCCCc-ccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCcccc
Confidence            468888888874 322111 123356788888888764 33322234556788888888874 55554445566778888


Q ss_pred             EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHH---HHHHHHHhC
Q 015585          215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDD---GILTIAAAG  291 (404)
Q Consensus       215 ~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~l~~~~  291 (404)
                      +|++.+|.++...... ...+++|++|+++++. +....+....    ..+++|++|+++++ .++..   .+..+ ..+
T Consensus       104 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~l~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L  175 (276)
T 2z62_A          104 KLVAVETNLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYF----SNLTNLEHLDLSSN-KIQSIYCTDLRVL-HQM  175 (276)
T ss_dssp             EEECTTSCCCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGG----GGCTTCCEEECCSS-CCCEECGGGGHHH-HTC
T ss_pred             EEECCCCCccccCchh-cccCCCCCEEECcCCc-cceecCchhh----ccCCCCCEEECCCC-CCCcCCHHHhhhh-hhc
Confidence            8888877655321111 2246778888887765 3331111112    24667888888775 44331   22222 123


Q ss_pred             CCCc-eEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585          292 IGII-DLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       292 ~~L~-~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      +.|. .|++++|. ++....     ...   ...+|+.|+++++ .++......+.  .+++|+.|++++|+++.
T Consensus       176 ~~l~l~L~ls~n~-l~~~~~-----~~~---~~~~L~~L~L~~n-~l~~~~~~~~~--~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          176 PLLNLSLDLSLNP-MNFIQP-----GAF---KEIRLKELALDTN-QLKSVPDGIFD--RLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TTCCEEEECCSSC-CCEECT-----TSS---CSCCEEEEECCSS-CCSCCCTTTTT--TCCSCCEEECCSSCBCC
T ss_pred             cccceeeecCCCc-ccccCc-----ccc---CCCcccEEECCCC-ceeecCHhHhc--ccccccEEEccCCcccc
Confidence            3333 67777764 432111     011   2346777777774 45533322222  46777777777777764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=1.5e-14  Score=136.97  Aligned_cols=238  Identities=20%  Similarity=0.197  Sum_probs=162.0

Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCc
Q 015585           14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF   93 (404)
Q Consensus        14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   93 (404)
                      ..+++|++|+|+++.+....+..+. .+++|++|++++|.         ++..  ..+..+++|++|+++++.       
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~---------l~~~--~~l~~l~~L~~L~Ls~N~-------   91 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNV---------LYET--LDLESLSTLRTLDLNNNY-------   91 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSC---------CEEE--EECTTCTTCCEEECCSSE-------
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCC---------CCCC--cccccCCCCCEEEecCCc-------
Confidence            4556999999999888764444444 59999999999973         3221  127889999999999863       


Q ss_pred             cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585           94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL  173 (404)
Q Consensus        94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  173 (404)
                        +...      ...++|+.|+++++ .++...    ...+++|+.|+++++. ++... ......+++|+.|+++++. 
T Consensus        92 --l~~l------~~~~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-  155 (487)
T 3oja_A           92 --VQEL------LVGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLKLNE-  155 (487)
T ss_dssp             --EEEE------EECTTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSSC-CCSGG-GBCGGGGSSEEEEECTTSC-
T ss_pred             --CCCC------CCCCCcCEEECcCC-cCCCCC----ccccCCCCEEECCCCC-CCCCC-chhhcCCCCCCEEECCCCC-
Confidence              2221      13489999999985 443321    1235899999999986 33211 1122357899999999875 


Q ss_pred             CCHHHHHHhh-CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHH
Q 015585          174 ITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK  252 (404)
Q Consensus       174 ~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~  252 (404)
                      +.......+. .+++|++|+++++ .++..  .....+++|+.|++++|.++.....  ...+++|+.|++++|. ++. 
T Consensus       156 l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~-  228 (487)
T 3oja_A          156 IDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNK-LVL-  228 (487)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSC-CCE-
T ss_pred             CCCcChHHHhhhCCcccEEecCCC-ccccc--cccccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCc-Ccc-
Confidence            4443344454 6899999999995 55543  3344689999999999988753221  3357899999999987 543 


Q ss_pred             HHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEee
Q 015585          253 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCV  299 (404)
Q Consensus       253 ~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l  299 (404)
                       +....    ..+++|+.|+++++ .+....+......++.|+.+.+
T Consensus       229 -lp~~l----~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          229 -IEKAL----RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             -ECTTC----CCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHH
T ss_pred             -cchhh----ccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEec
Confidence             11112    46789999999996 6664444444445555655555

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.41  E-value=4.5e-14  Score=125.97  Aligned_cols=260  Identities=16%  Similarity=0.115  Sum_probs=161.4

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhh-hh--hhcCCCCCceEEecccccC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG-LQ--SLGSCHHLTGLSLTRCRHN   88 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~--~l~~~~~L~~L~l~~~~~~   88 (404)
                      .+...++|++|+++++.+  ..+..+...   |++|+++++....    ..++... ..  ....+++|++|+++++.. 
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-  107 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA----ARIPSRILFGALRVLGISGLQELTLENLEV-  107 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE----EECBHHHHHHHHHHHTTSCCCEEEEEEEBC-
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC----CCcCHHHHHHHHHhcCcCCccEEEccCCcc-
Confidence            345567788888887776  333444442   7777777652100    1122211 11  123689999999998642 


Q ss_pred             CCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHH--HHHHHHH-hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccE
Q 015585           89 HQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA--GFAAILL-SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVE  165 (404)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~-~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~  165 (404)
                           ....+..+  +...+++|++|+++++ .++..  .+..+.. ..++|++|+++++.. +... ......+++|+.
T Consensus       108 -----~~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~  177 (312)
T 1wwl_A          108 -----TGTAPPPL--LEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFS-CEQVRVFPALST  177 (312)
T ss_dssp             -----BSCCCCCS--SSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCC-TTTCCCCSSCCE
T ss_pred             -----cchhHHHH--HHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccch-HHHhccCCCCCE
Confidence                 11111110  0146789999999985 44332  1222111 128999999999852 2211 122347899999


Q ss_pred             EEccCCCCCCHH-HHHHh--hCCCCCCEEeccCCCCCCh---HHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585          166 VRLLWCRLITSE-TVKKL--ASSRNLEVLDLGGCKSIAD---TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM  239 (404)
Q Consensus       166 L~l~~~~~~~~~-~~~~l--~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~  239 (404)
                      |+++++...... ....+  ..+++|++|+++++ .+..   .....+..+++|++|++++|.+++.........+++|+
T Consensus       178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             EECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            999998633322 23344  57899999999995 5652   22233457899999999999887643111122468999


Q ss_pred             EEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCC
Q 015585          240 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVT  306 (404)
Q Consensus       240 ~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~  306 (404)
                      +|++++|. ++.  +..      ...++|++|+++++ .++...  . ...+++|+.|++++|+ ++
T Consensus       257 ~L~Ls~N~-l~~--ip~------~~~~~L~~L~Ls~N-~l~~~p--~-~~~l~~L~~L~L~~N~-l~  309 (312)
T 1wwl_A          257 SLNLSFTG-LKQ--VPK------GLPAKLSVLDLSYN-RLDRNP--S-PDELPQVGNLSLKGNP-FL  309 (312)
T ss_dssp             EEECTTSC-CSS--CCS------SCCSEEEEEECCSS-CCCSCC--C-TTTSCEEEEEECTTCT-TT
T ss_pred             EEECCCCc-cCh--hhh------hccCCceEEECCCC-CCCCCh--h-HhhCCCCCEEeccCCC-CC
Confidence            99999987 542  111      12279999999996 665431  1 3467999999999996 54

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=123.14  Aligned_cols=136  Identities=18%  Similarity=0.141  Sum_probs=72.2

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHH--hCCCCcEEEecCCCCCCHHHHHHHH-cCCCCccEEEccCCCCCCH---HHHHHh
Q 015585          109 KGLESVRLGGFSKVSDAGFAAILL--SCHSLKKFEVRSASFLSDLAFHDLT-GVPCALVEVRLLWCRLITS---ETVKKL  182 (404)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~l  182 (404)
                      ..++.+.+.++ .+++..+..+..  .+++|++|+++++.. ....-..+. ..+++|+.|+++++.....   .....+
T Consensus        64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            46788888874 566665554433  236788888887742 211101111 3567777777777652210   111223


Q ss_pred             hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHH-HHHH--HHhcCCCcCEEeecCCC
Q 015585          183 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDS-GLSI--LAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       183 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~l~~--l~~~~~~L~~L~l~~~~  247 (404)
                      ..+++|++|+++++ .+.......+..+++|++|++++|.+... ++..  ....+++|++|++++|.
T Consensus       142 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          142 WLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             TBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             hhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence            35677777777764 44443344455666677777766665432 1111  01234555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.39  E-value=1.4e-14  Score=130.11  Aligned_cols=225  Identities=13%  Similarity=0.080  Sum_probs=150.1

Q ss_pred             CCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcc
Q 015585           15 SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK   94 (404)
Q Consensus        15 ~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~   94 (404)
                      ..++++.|+|+++.+. ..+..+.. +++|++|++++|.         ++ .....++.+++|++|+++++.      +.
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~---------l~-~lp~~~~~l~~L~~L~Ls~n~------l~  140 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAG---------LM-ELPDTMQQFAGLETLTLARNP------LR  140 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSC---------CC-CCCSCGGGGTTCSEEEEESCC------CC
T ss_pred             cccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCC---------cc-chhHHHhccCCCCEEECCCCc------cc
Confidence            4588999999988776 33333444 8999999999973         33 222346788999999998864      22


Q ss_pred             ccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHH-------HHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEE
Q 015585           95 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFA-------AILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVR  167 (404)
Q Consensus        95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-------~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~  167 (404)
                      .+..     ....+++|+.|++++|.........       ..+..+++|+.|+++++. ++  .+......+++|+.|+
T Consensus       141 ~lp~-----~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~  212 (328)
T 4fcg_A          141 ALPA-----SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR--SLPASIANLQNLKSLK  212 (328)
T ss_dssp             CCCG-----GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC--CCCGGGGGCTTCCEEE
T ss_pred             cCcH-----HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC--cchHhhcCCCCCCEEE
Confidence            2321     1357889999999886433211000       002247899999999885 33  2223345788999999


Q ss_pred             ccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          168 LLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       168 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      ++++.. .. ....+..+++|++|++++| .+.......+..+++|++|++++|.+....... ...+++|++|++++|.
T Consensus       213 L~~N~l-~~-l~~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          213 IRNSPL-SA-LGPAIHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             EESSCC-CC-CCGGGGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCT
T ss_pred             ccCCCC-Cc-CchhhccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCC
Confidence            998763 31 1224668899999999996 444444456678899999999998654322222 2368999999999987


Q ss_pred             CCcHHHHHHHHhhcCCCCCCccEEecCC
Q 015585          248 RVTDKGISHLLCVGGTISQSLTTLDLGY  275 (404)
Q Consensus       248 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~  275 (404)
                      ..+. ....+     ..+++|+.+.+..
T Consensus       289 ~~~~-iP~~l-----~~L~~L~~l~l~~  310 (328)
T 4fcg_A          289 NLSR-LPSLI-----AQLPANCIILVPP  310 (328)
T ss_dssp             TCCC-CCGGG-----GGSCTTCEEECCG
T ss_pred             chhh-ccHHH-----hhccCceEEeCCH
Confidence            4332 11222     3678899998875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=2.1e-13  Score=121.53  Aligned_cols=60  Identities=23%  Similarity=0.263  Sum_probs=34.1

Q ss_pred             CCCcEEeccCCCCChHHHHHHHh--hCCCccEEeecCCCCCCcccccccchhhhhhh--cCCCCCceEEeccc
Q 015585           17 FNLRSLSLVLDVITDELLITITA--SLPFLVELDLEDRPNTEPLARLDLTSSGLQSL--GSCHHLTGLSLTRC   85 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~   85 (404)
                      ..++.+.+....+.+..+..+..  .+++|++|++++|.         +.......+  ..+++|++|+++++
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n  127 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK---------ITGTMPPLPLEATGLALSSLRLRNV  127 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC---------CBSCCCCCSSSCCCBCCSSCEEESC
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE---------eccchhhhhhhccCCCCCEEEeecc
Confidence            34666777666666555444332  24567777777762         222222233  56677777777664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.37  E-value=1.4e-12  Score=116.01  Aligned_cols=146  Identities=20%  Similarity=0.304  Sum_probs=73.3

Q ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCC
Q 015585          106 EGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS  185 (404)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  185 (404)
                      ..+++|+.|+++++. ++..  . -+..+++|+.|+++++. ++..  .. ...+++|+.|+++++. +..  +..+..+
T Consensus        82 ~~l~~L~~L~L~~n~-l~~~--~-~~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~-l~~--~~~l~~l  150 (308)
T 1h6u_A           82 KNLTKITELELSGNP-LKNV--S-AIAGLQSIKTLDLTSTQ-ITDV--TP-LAGLSNLQVLYLDLNQ-ITN--ISPLAGL  150 (308)
T ss_dssp             TTCCSCCEEECCSCC-CSCC--G-GGTTCTTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECCSSC-CCC--CGGGGGC
T ss_pred             ccCCCCCEEEccCCc-CCCc--h-hhcCCCCCCEEECCCCC-CCCc--hh-hcCCCCCCEEECCCCc-cCc--CccccCC
Confidence            345555555555532 2221  1 13345566666666553 2211  11 3355666666666654 221  1124556


Q ss_pred             CCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCC
Q 015585          186 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS  265 (404)
Q Consensus       186 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~  265 (404)
                      ++|++|+++++ .+.+.  ..+..+++|+.|++++|.+++...   ...+++|++|++++|. +.+..  .+     ..+
T Consensus       151 ~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~l-----~~l  216 (308)
T 1h6u_A          151 TNLQYLSIGNA-QVSDL--TPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQ-ISDVS--PL-----ANT  216 (308)
T ss_dssp             TTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSC-CCBCG--GG-----TTC
T ss_pred             CCccEEEccCC-cCCCC--hhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCc-cCccc--cc-----cCC
Confidence            66666666664 34332  225566666666666665543221   2346667777776665 33322  12     256


Q ss_pred             CCccEEecCCC
Q 015585          266 QSLTTLDLGYM  276 (404)
Q Consensus       266 ~~L~~L~l~~~  276 (404)
                      ++|+.|+++++
T Consensus       217 ~~L~~L~l~~N  227 (308)
T 1h6u_A          217 SNLFIVTLTNQ  227 (308)
T ss_dssp             TTCCEEEEEEE
T ss_pred             CCCCEEEccCC
Confidence            66777776664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.35  E-value=1.2e-12  Score=116.34  Aligned_cols=103  Identities=19%  Similarity=0.242  Sum_probs=46.6

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCC
Q 015585          108 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRN  187 (404)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  187 (404)
                      +++|++|+++++ .+...  .. +..+++|+.|+++++.......    ...+++|+.|+++++. +..  +..+..+++
T Consensus        40 l~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~--~~~~~~l~~  108 (308)
T 1h6u_A           40 LDGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKN--VSAIAGLQS  108 (308)
T ss_dssp             HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSC--CGGGTTCTT
T ss_pred             cCCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCC--chhhcCCCC
Confidence            346666666664 22221  11 3445666666666553211111    3345555555555543 221  123444555


Q ss_pred             CCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585          188 LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT  224 (404)
Q Consensus       188 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  224 (404)
                      |++|+++++ .+..  +..+..+++|++|++++|.++
T Consensus       109 L~~L~l~~n-~l~~--~~~l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A          109 IKTLDLTST-QITD--VTPLAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             CCEEECTTS-CCCC--CGGGTTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCC-CCCC--chhhcCCCCCCEEECCCCccC
Confidence            555555553 3322  122444555555555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.33  E-value=1.1e-11  Score=120.05  Aligned_cols=244  Identities=19%  Similarity=0.169  Sum_probs=165.0

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      ++|++|++++|.++..  +   ..+++|++|++++|..         +.  +..  .+++|++|+++++.      +..+
T Consensus        61 ~~L~~L~L~~N~l~~l--p---~~l~~L~~L~Ls~N~l---------~~--lp~--~l~~L~~L~Ls~N~------l~~l  116 (622)
T 3g06_A           61 AHITTLVIPDNNLTSL--P---ALPPELRTLEVSGNQL---------TS--LPV--LPPGLLELSIFSNP------LTHL  116 (622)
T ss_dssp             TTCSEEEECSCCCSCC--C---CCCTTCCEEEECSCCC---------SC--CCC--CCTTCCEEEECSCC------CCCC
T ss_pred             CCCcEEEecCCCCCCC--C---CcCCCCCEEEcCCCcC---------Cc--CCC--CCCCCCEEECcCCc------CCCC
Confidence            7999999998887731  1   1478999999999842         21  111  67899999998863      2223


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      ..        .+++|+.|+++++ .++.     +...+++|++|+++++. ++.     +....++|+.|+++++. +..
T Consensus       117 ~~--------~l~~L~~L~L~~N-~l~~-----lp~~l~~L~~L~Ls~N~-l~~-----l~~~~~~L~~L~L~~N~-l~~  175 (622)
T 3g06_A          117 PA--------LPSGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDNQ-LAS-----LPALPSELCKLWAYNNQ-LTS  175 (622)
T ss_dssp             CC--------CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC
T ss_pred             CC--------CCCCcCEEECCCC-CCCc-----CCCCCCCCCEEECcCCc-CCC-----cCCccCCCCEEECCCCC-CCC
Confidence            22        4578999999985 3332     11235899999999985 322     11245789999999875 332


Q ss_pred             HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHH
Q 015585          177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH  256 (404)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~  256 (404)
                        +.  ..+++|+.|+++++ .+..  +.  ...++|+.|++.+|.++.     +...+++|+.|++++|. ++..    
T Consensus       176 --l~--~~~~~L~~L~Ls~N-~l~~--l~--~~~~~L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N~-L~~l----  236 (622)
T 3g06_A          176 --LP--MLPSGLQELSVSDN-QLAS--LP--TLPSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNR-LTSL----  236 (622)
T ss_dssp             --CC--CCCTTCCEEECCSS-CCSC--CC--CCCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSC-CSCC----
T ss_pred             --Cc--ccCCCCcEEECCCC-CCCC--CC--CccchhhEEECcCCcccc-----cCCCCCCCCEEEccCCc-cCcC----
Confidence              11  35689999999984 5543  11  135789999999987763     22245789999999886 5431    


Q ss_pred             HHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCC
Q 015585          257 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIG  336 (404)
Q Consensus       257 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~  336 (404)
                       .    ..+++|++|+++++ .++...     ..+++|+.|++++|. ++.. -..+.       .+++|+.|++++| .
T Consensus       237 -p----~~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N~-L~~l-p~~l~-------~l~~L~~L~L~~N-~  295 (622)
T 3g06_A          237 -P----VLPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRNQ-LTRL-PESLI-------HLSSETTVNLEGN-P  295 (622)
T ss_dssp             -C----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CCSC-CGGGG-------GSCTTCEEECCSC-C
T ss_pred             -C----CCCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCCC-CCcC-CHHHh-------hccccCEEEecCC-C
Confidence             1    35688999999986 554311     156889999999985 5521 11222       5889999999995 6


Q ss_pred             CCHHHHHhh
Q 015585          337 LSVDSLRWV  345 (404)
Q Consensus       337 i~~~~~~~l  345 (404)
                      ++......+
T Consensus       296 l~~~~~~~l  304 (622)
T 3g06_A          296 LSERTLQAL  304 (622)
T ss_dssp             CCHHHHHHH
T ss_pred             CCCcCHHHH
Confidence            776555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.29  E-value=2.3e-13  Score=119.20  Aligned_cols=108  Identities=19%  Similarity=0.129  Sum_probs=51.2

Q ss_pred             CCCCccEEEccCCCCCCHH-HHHHhhCCCCCCEEeccCCCCCChH---HHHhhhCCCCCC-EEEccCCccCHHHHHHHHh
Q 015585          159 VPCALVEVRLLWCRLITSE-TVKKLASSRNLEVLDLGGCKSIADT---CLRSISCLRKLT-ALNLTGADITDSGLSILAQ  233 (404)
Q Consensus       159 ~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~L~-~L~l~~~~l~~~~l~~l~~  233 (404)
                      .+++|+.|+++++. +... ....+..+++|++|+++++ .+...   .+..+..++.+. .|++++|.++......+  
T Consensus       122 ~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--  197 (276)
T 2z62_A          122 HLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--  197 (276)
T ss_dssp             TCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS--
T ss_pred             cCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc--
Confidence            44556666665543 2111 1123445666666666663 34332   222223333333 66666665543211111  


Q ss_pred             cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC
Q 015585          234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM  276 (404)
Q Consensus       234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~  276 (404)
                      ...+|++|+++++. ++.... ...    ..+++|++|++++.
T Consensus       198 ~~~~L~~L~L~~n~-l~~~~~-~~~----~~l~~L~~L~l~~N  234 (276)
T 2z62_A          198 KEIRLKELALDTNQ-LKSVPD-GIF----DRLTSLQKIWLHTN  234 (276)
T ss_dssp             CSCCEEEEECCSSC-CSCCCT-TTT----TTCCSCCEEECCSS
T ss_pred             CCCcccEEECCCCc-eeecCH-hHh----cccccccEEEccCC
Confidence            22367777777665 332211 111    34667777777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.28  E-value=3.8e-13  Score=117.36  Aligned_cols=183  Identities=16%  Similarity=0.112  Sum_probs=118.2

Q ss_pred             CCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCE
Q 015585          161 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN  240 (404)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~  240 (404)
                      ++++.|+++++. +.......+..+++|++|+++++ .+.......+..+++|++|++++|.++..... ....+++|++
T Consensus        37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIG-VFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCE
T ss_pred             CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHh-HcccccCCCE
Confidence            579999998875 43322234567899999999884 55544334456789999999999877642221 2235788999


Q ss_pred             EeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCc
Q 015585          241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ  320 (404)
Q Consensus       241 L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~  320 (404)
                      |+++++. +.......+     ..+++|++|+++++ .++..... ....+++|+.|++++|. ++......+.      
T Consensus       114 L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~------  178 (270)
T 2o6q_A          114 LRLDRNQ-LKSLPPRVF-----DSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNNQ-LKRVPEGAFD------  178 (270)
T ss_dssp             EECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTT------
T ss_pred             EECCCCc-cCeeCHHHh-----CcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCCc-CcEeChhHhc------
Confidence            9998876 433221112     36788999999886 44432211 12356889999998884 4432221222      


Q ss_pred             ccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585          321 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       321 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                       .+++|+.|+++++ .++......+.  .+++|+.|++++|++.-
T Consensus       179 -~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          179 -KLTELKTLKLDNN-QLKRVPEGAFD--SLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             -TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCBCC
T ss_pred             -cCCCcCEEECCCC-cCCcCCHHHhc--cccCCCEEEecCCCeeC
Confidence             4788999999885 56543333332  47889999998888754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.24  E-value=1.3e-12  Score=115.15  Aligned_cols=201  Identities=14%  Similarity=0.066  Sum_probs=98.0

Q ss_pred             hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCC
Q 015585          133 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRK  212 (404)
Q Consensus       133 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  212 (404)
                      .+++++.++++++. ++.  +.  ....+.++.|+++++. +.......+..+++|++|+++++ .++..  .....+++
T Consensus         8 ~l~~l~~l~~~~~~-l~~--ip--~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~   78 (290)
T 1p9a_G            8 KVASHLEVNCDKRN-LTA--LP--PDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKL--QVDGTLPV   78 (290)
T ss_dssp             CSTTCCEEECTTSC-CSS--CC--SCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEE--ECCSCCTT
T ss_pred             ccCCccEEECCCCC-CCc--CC--CCCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcc--cCCCCCCc
Confidence            34667777777653 221  00  0123567777777654 33322334556777777777763 44432  11245677


Q ss_pred             CCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCC
Q 015585          213 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI  292 (404)
Q Consensus       213 L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  292 (404)
                      |+.|++++|.++.  +......+++|++|+++++. ++......+     ..+++|++|+++++ .++..... ....++
T Consensus        79 L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~  148 (290)
T 1p9a_G           79 LGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNR-LTSLPLGAL-----RGLGELQELYLKGN-ELKTLPPG-LLTPTP  148 (290)
T ss_dssp             CCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSC-CCCCCSSTT-----TTCTTCCEEECTTS-CCCCCCTT-TTTTCT
T ss_pred             CCEEECCCCcCCc--CchhhccCCCCCEEECCCCc-CcccCHHHH-----cCCCCCCEEECCCC-CCCccChh-hccccc
Confidence            7777777776542  11112245667777776664 332111111     24556666666664 33321111 112345


Q ss_pred             CCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          293 GIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       293 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      +|+.|++++|. ++......+.       .+++|+.|+++++ .++......+   ..++|+.|++++|++.
T Consensus       149 ~L~~L~L~~N~-l~~l~~~~~~-------~l~~L~~L~L~~N-~l~~ip~~~~---~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          149 KLEKLSLANNN-LTELPAGLLN-------GLENLDTLLLQEN-SLYTIPKGFF---GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TCCEEECTTSC-CSCCCTTTTT-------TCTTCCEEECCSS-CCCCCCTTTT---TTCCCSEEECCSCCBC
T ss_pred             CCCEEECCCCc-CCccCHHHhc-------CcCCCCEEECCCC-cCCccChhhc---ccccCCeEEeCCCCcc
Confidence            66666666663 3311111111       3566666666663 4442111111   2446666666666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.23  E-value=7.4e-13  Score=115.50  Aligned_cols=179  Identities=15%  Similarity=0.055  Sum_probs=91.2

Q ss_pred             CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585          135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT  214 (404)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  214 (404)
                      ++++.|+++++. ++... ...+..+++|+.|+++++. +.......+..+++|++|+++++ .+.......+..+++|+
T Consensus        37 ~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  112 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLA  112 (270)
T ss_dssp             TTCSEEECCSSC-CSCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCC
T ss_pred             CCCCEEECcCCC-CCeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCC
Confidence            457777777664 22110 0122356677777776654 22111112345677777777663 44443334445667777


Q ss_pred             EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCC
Q 015585          215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI  294 (404)
Q Consensus       215 ~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L  294 (404)
                      +|++++|.++...... ...+++|++|+++++. +.......+     ..+++|++|+++++ .++...... ...+++|
T Consensus       113 ~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L  183 (270)
T 2o6q_A          113 ELRLDRNQLKSLPPRV-FDSLTKLTYLSLGYNE-LQSLPKGVF-----DKLTSLKELRLYNN-QLKRVPEGA-FDKLTEL  183 (270)
T ss_dssp             EEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCSCCCTTT-TTTCTTC
T ss_pred             EEECCCCccCeeCHHH-hCcCcCCCEEECCCCc-CCccCHhHc-----cCCcccceeEecCC-cCcEeChhH-hccCCCc
Confidence            7777776554322111 1246677777777664 332211111     24567777777664 333211111 1235677


Q ss_pred             ceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585          295 IDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC  334 (404)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~  334 (404)
                      +.|++++|. ++......+.       .+++|+.|+++++
T Consensus       184 ~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N  215 (270)
T 2o6q_A          184 KTLKLDNNQ-LKRVPEGAFD-------SLEKLKMLQLQEN  215 (270)
T ss_dssp             CEEECCSSC-CSCCCTTTTT-------TCTTCCEEECCSS
T ss_pred             CEEECCCCc-CCcCCHHHhc-------cccCCCEEEecCC
Confidence            777777763 4422111111       3667777777664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.22  E-value=6.4e-13  Score=116.02  Aligned_cols=42  Identities=24%  Similarity=0.206  Sum_probs=18.9

Q ss_pred             hhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585          182 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT  224 (404)
Q Consensus       182 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  224 (404)
                      +..+++|++|+++++ .+.......+..+++|++|++++|.++
T Consensus        81 l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~  122 (272)
T 3rfs_A           81 LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQ  122 (272)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCC
Confidence            344555555555543 333222222344455555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.22  E-value=3e-12  Score=112.70  Aligned_cols=182  Identities=16%  Similarity=0.092  Sum_probs=98.1

Q ss_pred             ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCC
Q 015585           11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ   90 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   90 (404)
                      ..+..++++++++++++.++.. +..+   .+++++|++++|         .++......+..+++|+.|+++++.    
T Consensus         4 C~~~~l~~l~~l~~~~~~l~~i-p~~~---~~~l~~L~L~~N---------~l~~~~~~~~~~l~~L~~L~L~~n~----   66 (290)
T 1p9a_G            4 CEVSKVASHLEVNCDKRNLTAL-PPDL---PKDTTILHLSEN---------LLYTFSLATLMPYTRLTQLNLDRAE----   66 (290)
T ss_dssp             SEEECSTTCCEEECTTSCCSSC-CSCC---CTTCCEEECTTS---------CCSEEEGGGGTTCTTCCEEECTTSC----
T ss_pred             ccccccCCccEEECCCCCCCcC-CCCC---CCCCCEEEcCCC---------cCCccCHHHhhcCCCCCEEECCCCc----
Confidence            4577889999999998777632 1111   368999999997         3444444567788999999998853    


Q ss_pred             CCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccC
Q 015585           91 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW  170 (404)
Q Consensus        91 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~  170 (404)
                        +..+...      ..+++|+.|+++++ .++.  +...+..+++|+.|+++++. ++... ...+..+++|+.|++++
T Consensus        67 --l~~~~~~------~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l~~L~~L~L~~  133 (290)
T 1p9a_G           67 --LTKLQVD------GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKG  133 (290)
T ss_dssp             --CCEEECC------SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTT
T ss_pred             --cCcccCC------CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCc-CcccC-HHHHcCCCCCCEEECCC
Confidence              2222211      35678888888874 3331  11123445666666666663 11100 01122445555555555


Q ss_pred             CCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585          171 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT  224 (404)
Q Consensus       171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  224 (404)
                      +. +.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.++
T Consensus       134 N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          134 NE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CC-CCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            43 22111112234455555555552 333222223334455555555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.19  E-value=1.4e-11  Score=101.86  Aligned_cols=148  Identities=18%  Similarity=0.165  Sum_probs=81.6

Q ss_pred             CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585          135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT  214 (404)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  214 (404)
                      ++|+.|+++++. ++.  +. -...+++|+.|+++++. +..  +..+..+++|++|+++++ .+....+..++.+++|+
T Consensus        44 ~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~l~~n~-~~~--~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           44 NSLTYITLANIN-VTD--LT-GIEYAHNIKDLTINNIH-ATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HTCCEEEEESSC-CSC--CT-TGGGCTTCSEEEEESCC-CSC--CGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCC
T ss_pred             CCccEEeccCCC-ccC--hH-HHhcCCCCCEEEccCCC-CCc--chhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCC
Confidence            566666666653 221  11 12355667777776653 221  224556777777777773 56555555666677777


Q ss_pred             EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCC
Q 015585          215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI  294 (404)
Q Consensus       215 ~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L  294 (404)
                      +|++++|.+++.....+. .+++|++|++++|..+++..  .+     ..+++|++|+++++ .+++..   ....+++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~--~l-----~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L  183 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM--PL-----KTLPELKSLNIQFD-GVHDYR---GIEDFPKL  183 (197)
T ss_dssp             EEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG--GG-----GGCSSCCEEECTTB-CCCCCT---TGGGCSSC
T ss_pred             EEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH--hh-----cCCCCCCEEECCCC-CCcChH---HhccCCCC
Confidence            777777777664444443 36677777776664333321  12     24556666666664 333311   11234556


Q ss_pred             ceEeecCC
Q 015585          295 IDLCVRSC  302 (404)
Q Consensus       295 ~~L~l~~~  302 (404)
                      +.|++++|
T Consensus       184 ~~L~l~~N  191 (197)
T 4ezg_A          184 NQLYAFSQ  191 (197)
T ss_dssp             CEEEECBC
T ss_pred             CEEEeeCc
Confidence            66666555

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.18  E-value=9.1e-12  Score=108.67  Aligned_cols=177  Identities=14%  Similarity=0.105  Sum_probs=87.3

Q ss_pred             CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585           41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS  120 (404)
Q Consensus        41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~  120 (404)
                      +++|++|++.++.         ++  .+..+..+++|++|+++++.      +..+.      ....+++|++|+++++ 
T Consensus        40 l~~L~~L~l~~~~---------i~--~~~~l~~l~~L~~L~l~~n~------l~~~~------~l~~l~~L~~L~L~~n-   95 (272)
T 3rfs_A           40 LNSIDQIIANNSD---------IK--SVQGIQYLPNVRYLALGGNK------LHDIS------ALKELTNLTYLILTGN-   95 (272)
T ss_dssp             HTTCCEEECTTSC---------CC--CCTTGGGCTTCCEEECTTSC------CCCCG------GGTTCTTCCEEECTTS-
T ss_pred             ccceeeeeeCCCC---------cc--cccccccCCCCcEEECCCCC------CCCch------hhcCCCCCCEEECCCC-
Confidence            4566666666542         11  12234556666666665542      11111      1134556666666653 


Q ss_pred             CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCC
Q 015585          121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIA  200 (404)
Q Consensus       121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  200 (404)
                      .++... ...+..+++|+.|+++++. ++... ......+++|+.|+++++. +.......+..+++|++|+++++ .++
T Consensus        96 ~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~  170 (272)
T 3rfs_A           96 QLQSLP-NGVFDKLTNLKELVLVENQ-LQSLP-DGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYN-QLQ  170 (272)
T ss_dssp             CCCCCC-TTTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             ccCccC-hhHhcCCcCCCEEECCCCc-CCccC-HHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCC-CcC
Confidence            222111 1113345666666666653 21100 0112345667777776653 33211222345677777777764 444


Q ss_pred             hHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          201 DTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       201 ~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      ......+..+++|+.|++++|.++.... .....+++|+.|++++++
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             ccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCC
Confidence            3333334566777777777776553211 112246677777777665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.15  E-value=1.2e-11  Score=102.34  Aligned_cols=150  Identities=20%  Similarity=0.198  Sum_probs=73.1

Q ss_pred             CCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCE
Q 015585          161 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN  240 (404)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~  240 (404)
                      ++|+.|+++++. +.+  +..+..+++|++|++++| .+..  +..+..+++|++|++++|.+++.....+.        
T Consensus        44 ~~L~~L~l~~n~-i~~--l~~l~~l~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--------  109 (197)
T 4ezg_A           44 NSLTYITLANIN-VTD--LTGIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGKDVTSDKIPNLS--------  109 (197)
T ss_dssp             HTCCEEEEESSC-CSC--CTTGGGCTTCSEEEEESC-CCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCT--------
T ss_pred             CCccEEeccCCC-ccC--hHHHhcCCCCCEEEccCC-CCCc--chhhhcCCCCCEEEeECCccCcccChhhc--------
Confidence            456666666653 221  113445666666666664 3322  22444555566666655554432222211        


Q ss_pred             EeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCc
Q 015585          241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ  320 (404)
Q Consensus       241 L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~  320 (404)
                                             .+++|++|+++++ .+++.....+ ..+++|+.|++++|..+++..  .+.      
T Consensus       110 -----------------------~l~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l~------  156 (197)
T 4ezg_A          110 -----------------------GLTSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PLK------  156 (197)
T ss_dssp             -----------------------TCTTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GGG------
T ss_pred             -----------------------CCCCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH--hhc------
Confidence                                   3445555555553 3433222222 234556666665553233321  122      


Q ss_pred             ccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccc
Q 015585          321 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRL  363 (404)
Q Consensus       321 ~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l  363 (404)
                       .+++|+.|++++| .++...  .+.  .+++|+.|++++|.+
T Consensus       157 -~l~~L~~L~l~~n-~i~~~~--~l~--~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          157 -TLPELKSLNIQFD-GVHDYR--GIE--DFPKLNQLYAFSQTI  193 (197)
T ss_dssp             -GCSSCCEEECTTB-CCCCCT--TGG--GCSSCCEEEECBC--
T ss_pred             -CCCCCCEEECCCC-CCcChH--Hhc--cCCCCCEEEeeCccc
Confidence             4677777777774 444322  222  467777777777775

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.15  E-value=2.2e-12  Score=110.31  Aligned_cols=58  Identities=12%  Similarity=0.128  Sum_probs=29.4

Q ss_pred             CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecc
Q 015585           18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTR   84 (404)
Q Consensus        18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~   84 (404)
                      +|++|+++++.++......+ ..+++|++|++++|.        .++......+..+++|++|++++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~--------~l~~i~~~~f~~l~~L~~L~l~~   89 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDV--------TLQQLESHSFYNLSKVTHIEIRN   89 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCS--------SCCEECTTTEESCTTCCEEEEEE
T ss_pred             cccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCC--------CcceeCHhHcCCCcCCcEEECCC
Confidence            56666666655553222222 236666666666652        12222222345566666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.15  E-value=5.5e-11  Score=104.71  Aligned_cols=167  Identities=22%  Similarity=0.218  Sum_probs=99.4

Q ss_pred             CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585           41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS  120 (404)
Q Consensus        41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~  120 (404)
                      +++|++|++++|.         +..  +..+..+++|+.|+++++.      +..+..      ...+++|+.|+++++ 
T Consensus        45 l~~L~~L~l~~~~---------i~~--~~~~~~l~~L~~L~L~~n~------l~~~~~------l~~l~~L~~L~l~~n-  100 (291)
T 1h6t_A           45 LNSIDQIIANNSD---------IKS--VQGIQYLPNVTKLFLNGNK------LTDIKP------LANLKNLGWLFLDEN-  100 (291)
T ss_dssp             HHTCCEEECTTSC---------CCC--CTTGGGCTTCCEEECCSSC------CCCCGG------GTTCTTCCEEECCSS-
T ss_pred             cCcccEEEccCCC---------ccc--ChhHhcCCCCCEEEccCCc------cCCCcc------cccCCCCCEEECCCC-
Confidence            5567777777652         221  1235566777777776643      111211      245677777777764 


Q ss_pred             CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCC
Q 015585          121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIA  200 (404)
Q Consensus       121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  200 (404)
                      .++.  +.. +..+++|+.|+++++. ++..   .....+++|+.|+++++. +..  +..+..+++|++|+++++ .+.
T Consensus       101 ~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~---~~l~~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~N-~l~  169 (291)
T 1h6t_A          101 KVKD--LSS-LKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITD--ITVLSRLTKLDTLSLEDN-QIS  169 (291)
T ss_dssp             CCCC--GGG-GTTCTTCCEEECTTSC-CCCC---GGGGGCTTCCEEECCSSC-CCC--CGGGGGCTTCSEEECCSS-CCC
T ss_pred             cCCC--Chh-hccCCCCCEEECCCCc-CCCC---hhhcCCCCCCEEEccCCc-CCc--chhhccCCCCCEEEccCC-ccc
Confidence            3332  111 4556777777777774 2221   123356778888887764 332  245567788888888774 444


Q ss_pred             hHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          201 DTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       201 ~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      ...  .+..+++|+.|++++|.+++.  .. ...+++|+.|+++++.
T Consensus       170 ~~~--~l~~l~~L~~L~L~~N~i~~l--~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          170 DIV--PLAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEEEEEEE
T ss_pred             cch--hhcCCCccCEEECCCCcCCCC--hh-hccCCCCCEEECcCCc
Confidence            332  266778888888888877653  22 2357788888887765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.13  E-value=3.5e-10  Score=102.09  Aligned_cols=88  Identities=13%  Similarity=0.141  Sum_probs=57.3

Q ss_pred             cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCCHHHH
Q 015585          234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASV  310 (404)
Q Consensus       234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~  310 (404)
                      .+|+|++|.+.+|. +++.+...++.  .+.+|+|++|+++.+ .+++.+...+.   +.+++|+.|++++|. +++.++
T Consensus       250 ~~p~Lr~L~L~~~~-i~~~~~~~la~--a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~  324 (362)
T 2ra8_A          250 RFPNLKWLGIVDAE-EQNVVVEMFLE--SDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMK  324 (362)
T ss_dssp             TCTTCCEEEEESCT-THHHHHHHHHH--CSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHH
T ss_pred             CCCCcCEEeCCCCC-CchHHHHHHHh--CccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHH
Confidence            35677777777665 55544444431  135678888888764 77777766654   346788888888884 888888


Q ss_pred             HHHHhhCCCcccCCCCcEEeccCC
Q 015585          311 EALARKQPDQEKSKQLRRLDLCNC  334 (404)
Q Consensus       311 ~~l~~~~~~~~~~~~L~~L~l~~~  334 (404)
                      ..+...      +  ...++++..
T Consensus       325 ~~l~~a------l--g~~~~~~~~  340 (362)
T 2ra8_A          325 KELQKS------L--PMKIDVSDS  340 (362)
T ss_dssp             HHHHHH------C--CSEEECCSB
T ss_pred             HHHHHH------c--CCEEEecCC
Confidence            888862      2  244677663

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.12  E-value=2.6e-10  Score=102.89  Aligned_cols=166  Identities=13%  Similarity=0.081  Sum_probs=113.0

Q ss_pred             hhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHh-cCCCcCEEeecCCCC--CcH---HHHH
Q 015585          182 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQ-GNLPIMNLCLRGCKR--VTD---KGIS  255 (404)
Q Consensus       182 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~-~~~~L~~L~l~~~~~--l~~---~~~~  255 (404)
                      +..+|+|++|.++++....   +..+ ..++|++|++..+.+++..+..++. .+|+|++|+++.+..  ..+   ..+.
T Consensus       168 l~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3466777777777642221   1122 3678888888888888888877764 578888888853210  111   1122


Q ss_pred             HHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH--hCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccC
Q 015585          256 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA--AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN  333 (404)
Q Consensus       256 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~  333 (404)
                      ...  ....+|+|++|++..| .+.+.+...+.+  .+|+|+.|+|+.| .+++.+...++..++   .+++|+.|++++
T Consensus       244 ~~l--~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~---~l~~L~~L~L~~  316 (362)
T 2ra8_A          244 PLF--SKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVD---KIKHLKFINMKY  316 (362)
T ss_dssp             GGS--CTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHH---HHTTCSEEECCS
T ss_pred             HHH--hcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcc---cCCcceEEECCC
Confidence            222  1135789999999886 677666555554  4689999999888 499998888876333   478999999998


Q ss_pred             CCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          334 CIGLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       334 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      | .+++.++..+... +  ...++++++.
T Consensus       317 n-~i~d~~~~~l~~a-l--g~~~~~~~~~  341 (362)
T 2ra8_A          317 N-YLSDEMKKELQKS-L--PMKIDVSDSQ  341 (362)
T ss_dssp             B-BCCHHHHHHHHHH-C--CSEEECCSBC
T ss_pred             C-cCCHHHHHHHHHH-c--CCEEEecCCc
Confidence            6 7999988888631 2  3557887766

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.12  E-value=6.2e-13  Score=113.80  Aligned_cols=179  Identities=10%  Similarity=0.016  Sum_probs=83.3

Q ss_pred             CCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCc
Q 015585          159 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI  238 (404)
Q Consensus       159 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L  238 (404)
                      .+++|+.|+++++..+.......+..+++|++|++++|+.+.......+..+++|++|++++|.++.  +.. ...+++|
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L  129 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST  129 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence            3455555555554312211111234566666666665334444333444556667777766665543  111 2234555


Q ss_pred             C---EEeecCCCCCcHHHHHHHHhhcCCCCCCcc-EEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHH
Q 015585          239 M---NLCLRGCKRVTDKGISHLLCVGGTISQSLT-TLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALA  314 (404)
Q Consensus       239 ~---~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (404)
                      +   .|+++++..++......+     ..+++|+ +|+++++ .++......+ .. ++|+.|++++|+.++......+.
T Consensus       130 ~~L~~L~l~~N~~l~~i~~~~~-----~~l~~L~~~L~l~~n-~l~~i~~~~~-~~-~~L~~L~L~~n~~l~~i~~~~~~  201 (239)
T 2xwt_C          130 DIFFILEITDNPYMTSIPVNAF-----QGLCNETLTLKLYNN-GFTSVQGYAF-NG-TKLDAVYLNKNKYLTVIDKDAFG  201 (239)
T ss_dssp             CSEEEEEEESCTTCCEECTTTT-----TTTBSSEEEEECCSC-CCCEECTTTT-TT-CEEEEEECTTCTTCCEECTTTTT
T ss_pred             ccccEEECCCCcchhhcCcccc-----cchhcceeEEEcCCC-CCcccCHhhc-CC-CCCCEEEcCCCCCcccCCHHHhh
Confidence            5   666666622332211111     2455666 7776664 3332111111 11 45666666666323321111122


Q ss_pred             hhCCCcccC-CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCc
Q 015585          315 RKQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT  361 (404)
Q Consensus       315 ~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~  361 (404)
                             .+ ++|+.|+++++ .++...     ...+++|+.|.++++
T Consensus       202 -------~l~~~L~~L~l~~N-~l~~l~-----~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          202 -------GVYSGPSLLDVSQT-SVTALP-----SKGLEHLKELIARNT  236 (239)
T ss_dssp             -------TCSBCCSEEECTTC-CCCCCC-----CTTCTTCSEEECTTC
T ss_pred             -------ccccCCcEEECCCC-ccccCC-----hhHhccCceeeccCc
Confidence                   35 66677777663 443211     113566666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.12  E-value=2.3e-09  Score=87.36  Aligned_cols=124  Identities=12%  Similarity=0.066  Sum_probs=75.4

Q ss_pred             hcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCCCCCCHHH
Q 015585          233 QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDAS  309 (404)
Q Consensus       233 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~  309 (404)
                      ...++|++|++++|..+++.+...+.... ...++|++|+++++ .+++.+...+.+   ..+.|++|+|++|. +++.+
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g  109 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG  109 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence            34455555555555225555444433110 23456777777665 566666544433   34677777777774 77777


Q ss_pred             HHHHHhhCCCcccCCCCcEEec--cCCCCCCHHHHHhhhc--CCCCcccEEecCCccc
Q 015585          310 VEALARKQPDQEKSKQLRRLDL--CNCIGLSVDSLRWVKR--PSFRGLHWLGIGQTRL  363 (404)
Q Consensus       310 ~~~l~~~~~~~~~~~~L~~L~l--~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~l  363 (404)
                      ...++..+.   .+++|+.|++  ++ +.+++.+...+..  ...++|++|++++|.+
T Consensus       110 ~~~l~~~L~---~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQ---SNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGG---GCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHH---hCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            777777666   5677888888  44 4777776655431  2367788888887776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.09  E-value=2e-10  Score=101.08  Aligned_cols=146  Identities=24%  Similarity=0.235  Sum_probs=75.7

Q ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCC
Q 015585          106 EGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASS  185 (404)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  185 (404)
                      ..+++|+.|+++++ .++...  . +..+++|+.|+++++. ++.  +.. ...+++|+.|+++++. +..  +..+..+
T Consensus        65 ~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~L~~n~-i~~--~~~l~~l  133 (291)
T 1h6t_A           65 QYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDENK-VKD--LSS-LKDLKKLKSLSLEHNG-ISD--INGLVHL  133 (291)
T ss_dssp             GGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC-CCC--GGG-GTTCTTCCEEECTTSC-CCC--CGGGGGC
T ss_pred             hcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCCc-CCC--Chh-hccCCCCCEEECCCCc-CCC--ChhhcCC
Confidence            34566666666664 232211  1 4455666666666664 222  111 3355666666666654 222  2334456


Q ss_pred             CCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCC
Q 015585          186 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS  265 (404)
Q Consensus       186 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~  265 (404)
                      ++|++|+++++ .+...  ..+..+++|+.|++++|.+++...   ...+++|++|++++|. +++.  ..+     ..+
T Consensus       134 ~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~l--~~l-----~~l  199 (291)
T 1h6t_A          134 PQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDL--RAL-----AGL  199 (291)
T ss_dssp             TTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBC--GGG-----TTC
T ss_pred             CCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCCC--hhh-----ccC
Confidence            66666666663 33332  345556666666666665554221   2345666666666664 3332  112     245


Q ss_pred             CCccEEecCCC
Q 015585          266 QSLTTLDLGYM  276 (404)
Q Consensus       266 ~~L~~L~l~~~  276 (404)
                      ++|+.|+++++
T Consensus       200 ~~L~~L~l~~n  210 (291)
T 1h6t_A          200 KNLDVLELFSQ  210 (291)
T ss_dssp             TTCSEEEEEEE
T ss_pred             CCCCEEECcCC
Confidence            66666666653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.07  E-value=1.6e-10  Score=111.64  Aligned_cols=80  Identities=25%  Similarity=0.201  Sum_probs=34.7

Q ss_pred             CCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCc
Q 015585          159 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI  238 (404)
Q Consensus       159 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L  238 (404)
                      .+++|+.|++++|. +..  +..+..+++|+.|+|++| .+.....  +..+++|+.|+|++|.+++.  .. ...+++|
T Consensus       129 ~l~~L~~L~Ls~N~-l~~--l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L  199 (605)
T 1m9s_A          129 HLPQLESLYLGNNK-ITD--ITVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDL--RA-LAGLKNL  199 (605)
T ss_dssp             GCTTCSEEECCSSC-CCC--CGGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBC--GG-GTTCTTC
T ss_pred             CCCccCEEECCCCc-cCC--chhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCCC--hH-HccCCCC
Confidence            44455555555443 221  123344555555555543 3322111  44455555555555544432  11 1234555


Q ss_pred             CEEeecCCC
Q 015585          239 MNLCLRGCK  247 (404)
Q Consensus       239 ~~L~l~~~~  247 (404)
                      +.|++++|.
T Consensus       200 ~~L~L~~N~  208 (605)
T 1m9s_A          200 DVLELFSQE  208 (605)
T ss_dssp             SEEECCSEE
T ss_pred             CEEEccCCc
Confidence            555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.07  E-value=1.5e-09  Score=88.50  Aligned_cols=133  Identities=16%  Similarity=0.096  Sum_probs=103.7

Q ss_pred             HHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh---CCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcE
Q 015585          252 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRR  328 (404)
Q Consensus       252 ~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~  328 (404)
                      ..+....    ...+.|++|+++++..+++.++..+...   .++|++|+|++|. +++.+...++..+.   ..++|+.
T Consensus        26 ~~l~~~l----~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~---~n~~L~~   97 (185)
T 1io0_A           26 ETLKRIQ----NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLK---VNNTLKS   97 (185)
T ss_dssp             HHHHHHH----TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHH---HCSSCCE
T ss_pred             HHHHHHH----hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHH---hCCCcCE
Confidence            3445555    5788999999999658999887776554   5899999999995 99999988888666   6789999


Q ss_pred             EeccCCCCCCHHHHHhhh--cCCCCcccEEec--CCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585          329 LDLCNCIGLSVDSLRWVK--RPSFRGLHWLGI--GQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH  393 (404)
Q Consensus       329 L~l~~~~~i~~~~~~~l~--~~~~~~L~~L~l--~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~  393 (404)
                      |++++| .+++.+...+.  ....++|++|++  ++|.+...+...+....+..+.++ +++.+|.++-.
T Consensus        98 L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A           98 LNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             EECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             EECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            999994 89998877664  235789999999  889985433334444456678888 99999988643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.03  E-value=2.7e-10  Score=110.15  Aligned_cols=173  Identities=22%  Similarity=0.210  Sum_probs=105.1

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      ...+++|+.|+++++.+...  ..+ ..+++|++|+|++|.         +..  +..+..+++|+.|+++++..     
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l--~~l-~~l~~L~~L~Ls~N~---------l~~--~~~l~~l~~L~~L~Ls~N~l-----   99 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV--QGI-QYLPNVTKLFLNGNK---------LTD--IKPLTNLKNLGWLFLDENKI-----   99 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC--TTG-GGCTTCCEEECTTSC---------CCC--CGGGGGCTTCCEEECCSSCC-----
T ss_pred             hhcCCCCCEEECcCCCCCCC--hHH-ccCCCCCEEEeeCCC---------CCC--ChhhccCCCCCEEECcCCCC-----
Confidence            45667777888877666542  233 347788888887763         222  12266777888888877531     


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR  172 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  172 (404)
                       ..+.      ....+++|+.|+++++ .+...  . -+..+++|+.|+++++. ++..   .....+++|+.|++++|.
T Consensus       100 -~~l~------~l~~l~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~  164 (605)
T 1m9s_A          100 -KDLS------SLKDLKKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ  164 (605)
T ss_dssp             -CCCT------TSTTCTTCCEEECTTS-CCCCC--G-GGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC
T ss_pred             -CCCh------hhccCCCCCEEEecCC-CCCCC--c-cccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc
Confidence             1111      1245677888888775 33321  1 14566788888887775 3221   233467778888887765


Q ss_pred             CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCH
Q 015585          173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITD  225 (404)
Q Consensus       173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~  225 (404)
                       +...  ..+..+++|+.|+|++| .+..  +..+..+++|+.|++++|.+..
T Consensus       165 -l~~~--~~l~~l~~L~~L~Ls~N-~i~~--l~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          165 -ISDI--VPLAGLTKLQNLYLSKN-HISD--LRALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -CCCC--GGGTTCTTCCEEECCSS-CCCB--CGGGTTCTTCSEEECCSEEEEC
T ss_pred             -CCCc--hhhccCCCCCEEECcCC-CCCC--ChHHccCCCCCEEEccCCcCcC
Confidence             3321  12567778888888774 4543  2456677788888887776543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.97  E-value=6.3e-11  Score=102.01  Aligned_cols=89  Identities=13%  Similarity=0.045  Sum_probs=49.5

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHH
Q 015585          264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR  343 (404)
Q Consensus       264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~  343 (404)
                      .+++|++|+++++ .++..... ....+++|+.|++++|. ++......+.       .+++|+.|+++++ .++.....
T Consensus       105 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~  173 (251)
T 3m19_A          105 HLTQLDKLYLGGN-QLKSLPSG-VFDRLTKLKELRLNTNQ-LQSIPAGAFD-------KLTNLQTLSLSTN-QLQSVPHG  173 (251)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTT
T ss_pred             ccCCCCEEEcCCC-cCCCcChh-HhccCCcccEEECcCCc-CCccCHHHcC-------cCcCCCEEECCCC-cCCccCHH
Confidence            3455666666553 33321110 11235677777777764 4422111122       4778888888884 55543333


Q ss_pred             hhhcCCCCcccEEecCCccccC
Q 015585          344 WVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       344 ~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      .+.  .+++|+.|++++|++..
T Consensus       174 ~~~--~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          174 AFD--RLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTT--TCTTCCEEECCSCCBCT
T ss_pred             HHh--CCCCCCEEEeeCCceeC
Confidence            332  47888889988888864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.93  E-value=6.4e-10  Score=95.65  Aligned_cols=178  Identities=16%  Similarity=0.144  Sum_probs=91.2

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      ...++++++++.+... +..+   .+++++|++++|.         ++......+..+++|++|+++++.      +..+
T Consensus        14 ~~~~~l~~~~~~l~~~-p~~~---~~~l~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~~   74 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSV-PSGI---PADTEKLDLQSTG---------LATLSDATFRGLTKLTWLNLDYNQ------LQTL   74 (251)
T ss_dssp             GGGTEEECTTCCCSSC-CSCC---CTTCCEEECTTSC---------CCCCCTTTTTTCTTCCEEECTTSC------CCCC
T ss_pred             CCCeEEecCCCCcccc-CCCC---CCCCCEEEccCCC---------cCccCHhHhcCcccCCEEECCCCc------CCcc
Confidence            4567777776655521 1111   2578888888863         333333446677888888887753      2222


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      ....+    ..+++|+.|+++++ .++... ...+..+++|+.|+++++. ++... ...+..+++|+.|+++++. +..
T Consensus        75 ~~~~~----~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~  145 (251)
T 3m19_A           75 SAGVF----DDLTELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLP-SGVFDRLTKLKELRLNTNQ-LQS  145 (251)
T ss_dssp             CTTTT----TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCC
T ss_pred             CHhHh----ccCCcCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCCc-CCCcC-hhHhccCCcccEEECcCCc-CCc
Confidence            22211    45677888887774 333211 1123445667777776663 22100 0112245566666666543 222


Q ss_pred             HHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585          177 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI  223 (404)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  223 (404)
                      .....+..+++|++|+++++ .+.......+..+++|+.|++.+|.+
T Consensus       146 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          146 IPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             cCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence            11122345566666666652 44433333444556666666666544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.90  E-value=7.1e-10  Score=87.12  Aligned_cols=83  Identities=18%  Similarity=0.229  Sum_probs=35.4

Q ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH---HHHhhC
Q 015585          108 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET---VKKLAS  184 (404)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~  184 (404)
                      +++|+.|+++++ .++.. +......+++|+.|+++++. ++..........+++|+.|+++++. +....   ...+..
T Consensus        63 l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~  138 (149)
T 2je0_A           63 LNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKL  138 (149)
T ss_dssp             CTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHH
T ss_pred             CCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHH
Confidence            444555555443 22211 22223344555555555553 3322222223345555555555543 22111   123445


Q ss_pred             CCCCCEEecc
Q 015585          185 SRNLEVLDLG  194 (404)
Q Consensus       185 ~~~L~~L~l~  194 (404)
                      +++|++|+++
T Consensus       139 l~~L~~L~l~  148 (149)
T 2je0_A          139 LPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEETTB
T ss_pred             CCCcccccCC
Confidence            5666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.88  E-value=1.4e-09  Score=85.48  Aligned_cols=60  Identities=25%  Similarity=0.350  Sum_probs=25.5

Q ss_pred             CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      .+++|++|+++++ .+...  ..+..+++|++|++++|.+++. +......+++|++|++++|.
T Consensus        40 ~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~   99 (149)
T 2je0_A           40 EFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK   99 (149)
T ss_dssp             TCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC
T ss_pred             hcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc
Confidence            3444555555442 23222  3334444555555555444432 12222234555555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.85  E-value=4.8e-10  Score=97.05  Aligned_cols=166  Identities=18%  Similarity=0.204  Sum_probs=81.7

Q ss_pred             CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccc
Q 015585           16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR   95 (404)
Q Consensus        16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   95 (404)
                      +.++..++++.+.+.+..  .+. .+++|++|++++|.         ++.  +..+..+++|+.|+++++.      +..
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~-~l~~L~~L~l~~n~---------i~~--l~~l~~l~~L~~L~L~~N~------i~~   77 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQK-ELSGVQNFNGDNSN---------IQS--LAGMQFFTNLKELHLSHNQ------ISD   77 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHH-HHTTCSEEECTTSC---------CCC--CTTGGGCTTCCEEECCSSC------CCC
T ss_pred             HHHHHHHHhcCCCccccc--chh-hcCcCcEEECcCCC---------ccc--chHHhhCCCCCEEECCCCc------cCC
Confidence            344555566655555322  222 36777777777752         221  2245566777777776642      111


Q ss_pred             cChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCC
Q 015585           96 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT  175 (404)
Q Consensus        96 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~  175 (404)
                      +..      ...+++|+.|+++++ .++..  ..                          +. . ++|+.|+++++. +.
T Consensus        78 ~~~------l~~l~~L~~L~L~~N-~l~~l--~~--------------------------~~-~-~~L~~L~L~~N~-l~  119 (263)
T 1xeu_A           78 LSP------LKDLTKLEELSVNRN-RLKNL--NG--------------------------IP-S-ACLSRLFLDNNE-LR  119 (263)
T ss_dssp             CGG------GTTCSSCCEEECCSS-CCSCC--TT--------------------------CC-C-SSCCEEECCSSC-CS
T ss_pred             Chh------hccCCCCCEEECCCC-ccCCc--Cc--------------------------cc-c-CcccEEEccCCc-cC
Confidence            111      245566666666663 22210  00                          00 1 445555555543 22


Q ss_pred             HHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          176 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       176 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      .  +..+..+++|++|+++++ .+++.  ..+..+++|+.|++++|.+++.   .....+++|+.|+++++.
T Consensus       120 ~--~~~l~~l~~L~~L~Ls~N-~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          120 D--TDSLIHLKNLEILSIRNN-KLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             B--SGGGTTCTTCCEEECTTS-CCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred             C--ChhhcCcccccEEECCCC-cCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc
Confidence            1  123445566666666553 34332  2445556666666666655543   112245666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.80  E-value=2.1e-09  Score=92.98  Aligned_cols=78  Identities=18%  Similarity=0.147  Sum_probs=39.8

Q ss_pred             CCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585          160 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM  239 (404)
Q Consensus       160 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~  239 (404)
                      +++|+.|+++++. +..  +..+..+++|++|+++++ .+.....  +..+++|+.|++++|.+++.  ..+. . ++|+
T Consensus        40 l~~L~~L~l~~n~-i~~--l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~~l--~~~~-~-~~L~  109 (263)
T 1xeu_A           40 LSGVQNFNGDNSN-IQS--LAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLKNL--NGIP-S-ACLS  109 (263)
T ss_dssp             HTTCSEEECTTSC-CCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCSCC--TTCC-C-SSCC
T ss_pred             cCcCcEEECcCCC-ccc--chHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccCCc--Cccc-c-Cccc
Confidence            4566666666653 221  123445666666666663 3433221  55566666666666655431  1111 1 4555


Q ss_pred             EEeecCCC
Q 015585          240 NLCLRGCK  247 (404)
Q Consensus       240 ~L~l~~~~  247 (404)
                      +|++++|.
T Consensus       110 ~L~L~~N~  117 (263)
T 1xeu_A          110 RLFLDNNE  117 (263)
T ss_dssp             EEECCSSC
T ss_pred             EEEccCCc
Confidence            56555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.78  E-value=3.9e-10  Score=102.55  Aligned_cols=91  Identities=15%  Similarity=0.158  Sum_probs=47.0

Q ss_pred             CCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc-CCCCcccEEecCCccccCCChH
Q 015585          291 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR-PSFRGLHWLGIGQTRLASKGNP  369 (404)
Q Consensus       291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~-~~~~~L~~L~l~~~~l~~~~~~  369 (404)
                      +++|+.|++++|. ++......+.       .+++|+.|+++++ .++......+.. ..+++|+.|++++|.++.....
T Consensus       111 l~~L~~L~L~~N~-i~~~~~~~~~-------~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          111 LQALEVLLLYNNH-IVVVDRNAFE-------DMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             CTTCCEEECCSSC-CCEECTTTTT-------TCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred             CcCCCEEECCCCc-ccEECHHHhC-------CcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence            4566666666553 3321111122       4667777777763 454322222210 2367777777777777655433


Q ss_pred             HHHHHHhcCCcc--E-EEeccccccccC
Q 015585          370 VITEIHNERPWL--T-FCLDGCEIGCHD  394 (404)
Q Consensus       370 ~~~~~~~~~~~l--~-l~~~~~~~~~~~  394 (404)
                      .+.    ..|.+  + +.+.+|++.|++
T Consensus       182 ~~~----~l~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          182 DLQ----KLPAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             HHH----HSCHHHHTTEECCSSCEECCH
T ss_pred             Hhh----hccHhhcceEEecCCCccCCc
Confidence            332    23432  3 777777777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.78  E-value=1e-09  Score=88.12  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHH---HHHhh
Q 015585          107 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET---VKKLA  183 (404)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~  183 (404)
                      .+++|+.|+++++ .+... +......+++|+.|+++++. ++..........+++|+.|+++++. +....   ...+.
T Consensus        69 ~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~  144 (168)
T 2ell_A           69 KLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFK  144 (168)
T ss_dssp             CCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHT
T ss_pred             cCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHH
Confidence            4556666666654 22221 22334456677777777664 3321111223456777777777764 22211   12455


Q ss_pred             CCCCCCEEeccCC
Q 015585          184 SSRNLEVLDLGGC  196 (404)
Q Consensus       184 ~~~~L~~L~l~~~  196 (404)
                      .+++|++|++++|
T Consensus       145 ~l~~L~~L~l~~n  157 (168)
T 2ell_A          145 LLPQLTYLDGYDR  157 (168)
T ss_dssp             TCSSCCEETTEET
T ss_pred             hCccCcEecCCCC
Confidence            6777888877765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.75  E-value=2.9e-10  Score=109.24  Aligned_cols=38  Identities=24%  Similarity=0.151  Sum_probs=28.2

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDR   52 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~   52 (404)
                      +..+++|+.|+|+++.+. ..+..+. .+++|++|+++++
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n  382 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENK  382 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCH
T ss_pred             cccCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccc
Confidence            356889999999987775 3444554 4889999998664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.75  E-value=8.9e-10  Score=88.46  Aligned_cols=88  Identities=20%  Similarity=0.165  Sum_probs=39.0

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHH-HHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHH
Q 015585          264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDA-SVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL  342 (404)
Q Consensus       264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~  342 (404)
                      .+++|++|+++++ .++.. +......+++|+.|++++|. +++. .+..+.       .+++|+.|++++| .++....
T Consensus        69 ~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~-------~l~~L~~L~l~~N-~l~~~~~  137 (168)
T 2ell_A           69 KLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK-------KLECLKSLDLFNC-EVTNLND  137 (168)
T ss_dssp             CCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS-------SCSCCCEEECCSS-GGGTSTT
T ss_pred             cCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh-------cCCCCCEEEeeCC-cCcchHH
Confidence            3455555555553 23221 11222235566666666553 3331 111222       3556666666654 3332111


Q ss_pred             ---HhhhcCCCCcccEEecCCcccc
Q 015585          343 ---RWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       343 ---~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                         ..+  ..+|+|+.|++++|.+.
T Consensus       138 ~~~~~~--~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          138 YRESVF--KLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHHHH--TTCSSCCEETTEETTSC
T ss_pred             HHHHHH--HhCccCcEecCCCCChh
Confidence               112  23566666666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.72  E-value=8.4e-08  Score=77.63  Aligned_cols=132  Identities=18%  Similarity=0.170  Sum_probs=100.7

Q ss_pred             HHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHH---hCCCCceEeecCC
Q 015585          226 SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSC  302 (404)
Q Consensus       226 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~  302 (404)
                      ..+..+...-+.|++|+++++..+++.+...++.+. ..-..|+.|+++++ .+.+.+...+.+   .-+.|+.|+|+.|
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            356666666788999999886458988877665322 24568999999996 899988665543   3488999999999


Q ss_pred             CCCCHHHHHHHHhhCCCcccCCCCcEEeccCC-C-CCCHHHHHhhh--cCCCCcccEEecCCccc
Q 015585          303 FYVTDASVEALARKQPDQEKSKQLRRLDLCNC-I-GLSVDSLRWVK--RPSFRGLHWLGIGQTRL  363 (404)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~-~-~i~~~~~~~l~--~~~~~~L~~L~l~~~~l  363 (404)
                      . |++.+..++++.+.   ..+.|+.|+++++ . .+++.+...+.  ....++|+.|+++.+.+
T Consensus       109 ~-Ig~~Ga~ala~aL~---~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          109 F-LTPELLARLLRSTL---VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             B-CCHHHHHHHHHHTT---TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             c-CCHHHHHHHHHHHh---hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            4 99999999999888   7889999999874 2 57776655443  12478999999987664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.68  E-value=4.2e-07  Score=73.53  Aligned_cols=120  Identities=12%  Similarity=0.132  Sum_probs=86.6

Q ss_pred             hCCCCCCEEEccCC-ccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHH
Q 015585          208 SCLRKLTALNLTGA-DITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDG  283 (404)
Q Consensus       208 ~~~~~L~~L~l~~~-~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~  283 (404)
                      ..-+.|++|+++++ .+.+.+...+++   ....|+.|+|++|. +++.+...++... ..-+.|++|+++.+ .+++.|
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL-~~N~tL~~L~L~~N-~Ig~~G  114 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELI-ETSPSLRVLNVESN-FLTPEL  114 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHH-HHCSSCCEEECCSS-BCCHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHH-hcCCccCeEecCCC-cCCHHH
Confidence            45678888888875 888888777776   34568888888886 8877655443211 23467888888884 788888


Q ss_pred             HHHHHHhC---CCCceEeecCCC--CCCHHHHHHHHhhCCCcccCCCCcEEeccC
Q 015585          284 ILTIAAAG---IGIIDLCVRSCF--YVTDASVEALARKQPDQEKSKQLRRLDLCN  333 (404)
Q Consensus       284 ~~~l~~~~---~~L~~L~l~~~~--~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~  333 (404)
                      ...+.+.+   +.|++|+|+++.  .+++.+...++..+.   ..+.|+.|+++.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~---~N~tL~~L~l~~  166 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE---ENESLLRVGISF  166 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH---HCSSCCEEECCC
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH---hCCCcCeEeccC
Confidence            88777664   568888887652  478877766666555   678888888876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.62  E-value=1.5e-09  Score=90.54  Aligned_cols=32  Identities=13%  Similarity=0.094  Sum_probs=16.1

Q ss_pred             CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      +++|+.|++++++ ++         ..+++|++|+++.|.++
T Consensus       147 l~~L~~L~l~~N~-~~---------~~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          147 LTSLQYIWLHDNP-WD---------CTCPGIRYLSEWINKHS  178 (208)
T ss_dssp             CTTCCEEECCSCC-BC---------CCTTTTHHHHHHHHHCT
T ss_pred             CCCccEEEecCCC-ee---------cCCCCHHHHHHHHHhCC
Confidence            5566666666542 11         12455555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.60  E-value=1.4e-09  Score=98.45  Aligned_cols=35  Identities=14%  Similarity=0.093  Sum_probs=17.2

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCC
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDR   52 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~   52 (404)
                      +++++|+|++|.++......+ ..+++|++|+|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N   64 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQN   64 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECC
T ss_pred             CCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCC
Confidence            456666666555542211112 23556666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.60  E-value=2e-09  Score=90.47  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=78.7

Q ss_pred             CCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh
Q 015585          211 RKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA  290 (404)
Q Consensus       211 ~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  290 (404)
                      ++++.|++++|.++...... ...+++|+.|+++++. +.......+     ..+++|++|+++++ .++.... .....
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~-~~~l~~L~~L~Ls~N~-i~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~-~~f~~  102 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNNQ-ISELAPDAF-----QGLRSLNSLVLYGN-KITELPK-SLFEG  102 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTS-STTCTTCCEEECCSSC-CCEECTTTT-----TTCSSCCEEECCSS-CCCCCCT-TTTTT
T ss_pred             cCCCEEECCCCcCCCcCHhH-hhCCCCCCEEECCCCc-CCCcCHHHh-----hCCcCCCEEECCCC-cCCccCH-hHccC
Confidence            67899999888776422111 2246788888888776 443211222     35678888888875 4442111 11234


Q ss_pred             CCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          291 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                      +++|+.|++++|. ++......+.       .+++|+.|+++++ .++......+.  .+++|+.|++++|++.
T Consensus       103 l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          103 LFSLQLLLLNANK-INCLRVDAFQ-------DLHNLNLLSLYDN-KLQTIAKGTFS--PLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCEE
T ss_pred             CCCCCEEECCCCC-CCEeCHHHcC-------CCCCCCEEECCCC-cCCEECHHHHh--CCCCCCEEEeCCCCcC
Confidence            6778888887774 4432222222       4677888888774 55543333332  3677788888777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=4.3e-08  Score=87.81  Aligned_cols=232  Identities=15%  Similarity=0.167  Sum_probs=135.0

Q ss_pred             CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCC--Ccccccccch----------hhhhhhcC--------CC
Q 015585           16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNT--EPLARLDLTS----------SGLQSLGS--------CH   75 (404)
Q Consensus        16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~--~~~~~~~~~~----------~~~~~l~~--------~~   75 (404)
                      +++++.|.++++ +....+..+...+++|++|+|++|...  .... ..+..          ..-..+..        |+
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~-~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA-GTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS-SSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc-ccccccccccccccccCHHHhcccccccccccC
Confidence            577999999964 455566666655899999999987543  1000 00000          11122345        88


Q ss_pred             CCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC--CCHHHHHH-------------H----------
Q 015585           76 HLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK--VSDAGFAA-------------I----------  130 (404)
Q Consensus        76 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~~~~-------------l----------  130 (404)
                      +|+.|++.+.       ...+.+.++    ..|++|+.+++..+..  +....+..             .          
T Consensus       102 ~L~~l~L~~~-------i~~I~~~aF----~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~  170 (329)
T 3sb4_A          102 TLEKVILSEK-------IKNIEDAAF----KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF  170 (329)
T ss_dssp             TCCC-CBCTT-------CCEECTTTT----TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred             CCcEEECCcc-------ccchhHHHh----hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence            8888888652       233444433    5678888888876421  11100000             0          


Q ss_pred             -HHhC--------------------------CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh
Q 015585          131 -LLSC--------------------------HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA  183 (404)
Q Consensus       131 -~~~~--------------------------~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  183 (404)
                       ...|                          .++..+.+.+.  +....+..+...+++|+.+++.++. +..-.-.++.
T Consensus       171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~  247 (329)
T 3sb4_A          171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFA  247 (329)
T ss_dssp             CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTT
T ss_pred             ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhh
Confidence             0011                          22233333332  3444555555568999999999753 3332333466


Q ss_pred             CCCCCCEEeccCCCCCChHHHHhhhCCCCCC-EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcC
Q 015585          184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLT-ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG  262 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  262 (404)
                      .|++|+++++..  ++..-.-.++..+++|+ .+.+.. .++.-+-.+ +..|++|+.+.+..+. +...+-..+     
T Consensus       248 ~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a-F~~c~~L~~l~l~~n~-i~~I~~~aF-----  317 (329)
T 3sb4_A          248 QKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA-FMGCDNLRYVLATGDK-ITTLGDELF-----  317 (329)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT-TCCEECTTT-TTTCTTEEEEEECSSC-CCEECTTTT-----
T ss_pred             CCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc-cceEEchhh-hhCCccCCEEEeCCCc-cCccchhhh-----
Confidence            899999999987  35555556678899999 999987 333211111 2368999999996554 333222222     


Q ss_pred             CCCCCccEEec
Q 015585          263 TISQSLTTLDL  273 (404)
Q Consensus       263 ~~~~~L~~L~l  273 (404)
                      ..+++|+.+..
T Consensus       318 ~~~~~L~~ly~  328 (329)
T 3sb4_A          318 GNGVPSKLIYK  328 (329)
T ss_dssp             CTTCCCCEEEC
T ss_pred             cCCcchhhhcc
Confidence            36778888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.54  E-value=4.5e-08  Score=93.69  Aligned_cols=73  Identities=22%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             CCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCE
Q 015585          136 SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTA  215 (404)
Q Consensus       136 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  215 (404)
                      +|+.|+++++. ++.  +..   .+++|+.|+++++. ++.  +..  .+++|++|+++++ .++.  +..+.  ++|+.
T Consensus       121 ~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp~--~l~~L~~L~Ls~N-~L~~--lp~l~--~~L~~  184 (571)
T 3cvr_A          121 SLKHLDVDNNQ-LTM--LPE---LPALLEYINADNNQ-LTM--LPE--LPTSLEVLSVRNN-QLTF--LPELP--ESLEA  184 (571)
T ss_dssp             TCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSC-CSC--CCC--CCTTCCEEECCSS-CCSC--CCCCC--TTCCE
T ss_pred             CCCEEECCCCc-CCC--CCC---cCccccEEeCCCCc-cCc--CCC--cCCCcCEEECCCC-CCCC--cchhh--CCCCE
Confidence            55666665553 211  111   34556666665543 221  100  3456666666653 3332  11122  56666


Q ss_pred             EEccCCccC
Q 015585          216 LNLTGADIT  224 (404)
Q Consensus       216 L~l~~~~l~  224 (404)
                      |++++|.++
T Consensus       185 L~Ls~N~L~  193 (571)
T 3cvr_A          185 LDVSTNLLE  193 (571)
T ss_dssp             EECCSSCCS
T ss_pred             EECcCCCCC
Confidence            666666544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.53  E-value=8.3e-09  Score=93.72  Aligned_cols=159  Identities=16%  Similarity=0.083  Sum_probs=89.7

Q ss_pred             CCCcEEEecCCCCCCHHHHHHHHc-CCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCC
Q 015585          135 HSLKKFEVRSASFLSDLAFHDLTG-VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL  213 (404)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  213 (404)
                      +.++.|+++++. ++.... .... .+++|+.|+++++. +.......+..+++|++|++++ +.+.......+..+++|
T Consensus        39 ~~l~~L~Ls~N~-l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L  114 (361)
T 2xot_A           39 SYTALLDLSHNN-LSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQAL  114 (361)
T ss_dssp             TTCSEEECCSSC-CCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTC
T ss_pred             CCCCEEECCCCC-CCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCC
Confidence            467888888874 332111 1122 56788888888764 4332223455778888888887 35554444456677888


Q ss_pred             CEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCC
Q 015585          214 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG  293 (404)
Q Consensus       214 ~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~  293 (404)
                      +.|++++|.++...... ...+++|++|+++++. +.......+.  ....+++|+.|+++++ .++......+ ..++.
T Consensus       115 ~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~--~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~  188 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIK--DGNKLPKLMLLDLSSN-KLKKLPLTDL-QKLPA  188 (361)
T ss_dssp             CEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC------CTTCCEEECCSS-CCCCCCHHHH-HHSCH
T ss_pred             CEEECCCCcccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhc--CcccCCcCCEEECCCC-CCCccCHHHh-hhccH
Confidence            88888888765432111 2246778888887775 3331111110  0024667788887774 4443222222 12344


Q ss_pred             --CceEeecCCC
Q 015585          294 --IIDLCVRSCF  303 (404)
Q Consensus       294 --L~~L~l~~~~  303 (404)
                        ++.|++.+|+
T Consensus       189 ~~l~~l~l~~N~  200 (361)
T 2xot_A          189 WVKNGLYLHNNP  200 (361)
T ss_dssp             HHHTTEECCSSC
T ss_pred             hhcceEEecCCC
Confidence              3677777776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.53  E-value=6.2e-08  Score=81.88  Aligned_cols=130  Identities=16%  Similarity=0.037  Sum_probs=70.1

Q ss_pred             CCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCC
Q 015585           42 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSK  121 (404)
Q Consensus        42 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~  121 (404)
                      ++|++|++++|.         ++......+..+++|+.|+++++.      +..+....    ...+++|+.|+++++ .
T Consensus        40 ~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~N~------l~~i~~~~----~~~l~~L~~L~Ls~N-~   99 (229)
T 3e6j_A           40 TNAQILYLHDNQ---------ITKLEPGVFDSLINLKELYLGSNQ------LGALPVGV----FDSLTQLTVLDLGTN-Q   99 (229)
T ss_dssp             TTCSEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCCCCTTT----TTTCTTCCEEECCSS-C
T ss_pred             CCCCEEEcCCCc---------cCccCHHHhhCccCCcEEECCCCC------CCCcChhh----cccCCCcCEEECCCC-c
Confidence            567777777752         332222345566777777776643      22222221    134567777777764 3


Q ss_pred             CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCC
Q 015585          122 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGC  196 (404)
Q Consensus       122 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  196 (404)
                      ++... ...+..+++|+.|+++++. ++  .+......+++|+.|+++++. +.......+..+++|+.|++.++
T Consensus       100 l~~l~-~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          100 LTVLP-SAVFDRLVHLKELFMCCNK-LT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCC-TTTTTTCTTCCEEECCSSC-CC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCccC-hhHhCcchhhCeEeccCCc-cc--ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence            33211 1113456777777777764 22  111222466778888887764 33222223456778888888773

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=4.3e-09  Score=94.33  Aligned_cols=274  Identities=14%  Similarity=0.078  Sum_probs=123.0

Q ss_pred             CCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCH-HHHHHHHHhCCCCcEEEecCCCCCCHHH
Q 015585           74 CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSD-AGFAAILLSCHSLKKFEVRSASFLSDLA  152 (404)
Q Consensus        74 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~  152 (404)
                      +++++.|.+++.          +....+..+...+++|+.|+++++ .+.. .+..   ...+.++.+....+. +... 
T Consensus        24 ~~~l~~L~l~g~----------i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~---~~~~~~~~~~~~~~~-I~~~-   87 (329)
T 3sb4_A           24 ANSITHLTLTGK----------LNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKA---GTYPNGKFYIYMANF-VPAY-   87 (329)
T ss_dssp             HHHCSEEEEEEE----------ECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESS---SSSGGGCCEEECTTE-ECTT-
T ss_pred             hCceeEEEEecc----------ccHHHHHHHHHhhccCeEEecCcc-eeEEecCcc---ccccccccccccccc-cCHH-
Confidence            456777777652          455555555444777888888764 2220 0000   001112222222221 1111 


Q ss_pred             HHHHHcC--------CCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc-
Q 015585          153 FHDLTGV--------PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI-  223 (404)
Q Consensus       153 l~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l-  223 (404)
                         .+..        +++|++|.+..  .+..-+-.++..|++|+.+++.. +.+..-...++..+.++..+....... 
T Consensus        88 ---aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~  161 (329)
T 3sb4_A           88 ---AFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAY  161 (329)
T ss_dssp             ---TTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred             ---HhcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhh
Confidence               1234        67777777765  23222223345677777777766 233322233444455555554433110 


Q ss_pred             -CHHHHHHH-HhcCCCcC-EEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeec
Q 015585          224 -TDSGLSIL-AQGNLPIM-NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVR  300 (404)
Q Consensus       224 -~~~~l~~l-~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~  300 (404)
                       ....+... ...|..|+ .+.+.....+....+..     .....+++.+.+.+  .+.......+...|++|+.|++.
T Consensus       162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~-----~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~  234 (329)
T 3sb4_A          162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA-----GLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDIS  234 (329)
T ss_dssp             HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT-----TCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECT
T ss_pred             hccccccccccccccccceeEEecCCCcHHHHHhhc-----ccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECC
Confidence             00000000 01234444 34443332222211111     12344556666654  34555555555556777777776


Q ss_pred             CCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCccc-EEecCCccccCCChHHHHHHHhcCC
Q 015585          301 SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLH-WLGIGQTRLASKGNPVITEIHNERP  379 (404)
Q Consensus       301 ~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~  379 (404)
                      +|. ++.-+-.++.       +|++|+.|++.+.  ++..+...+.  .|++|+ .+.+.+ .++.+...   .+ ..|+
T Consensus       235 ~n~-i~~I~~~aF~-------~~~~L~~l~l~~n--i~~I~~~aF~--~~~~L~~~l~l~~-~l~~I~~~---aF-~~c~  297 (329)
T 3sb4_A          235 KTN-ATTIPDFTFA-------QKKYLLKIKLPHN--LKTIGQRVFS--NCGRLAGTLELPA-SVTAIEFG---AF-MGCD  297 (329)
T ss_dssp             TBC-CCEECTTTTT-------TCTTCCEEECCTT--CCEECTTTTT--TCTTCCEEEEECT-TCCEECTT---TT-TTCT
T ss_pred             CCC-cceecHhhhh-------CCCCCCEEECCcc--cceehHHHhh--CChhccEEEEEcc-cceEEchh---hh-hCCc
Confidence            653 3322222222       4666777766652  4433333332  366666 666665 44333221   12 3556


Q ss_pred             ccE-EEecccccccc
Q 015585          380 WLT-FCLDGCEIGCH  393 (404)
Q Consensus       380 ~l~-l~~~~~~~~~~  393 (404)
                      +++ +.+.++.+...
T Consensus       298 ~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          298 NLRYVLATGDKITTL  312 (329)
T ss_dssp             TEEEEEECSSCCCEE
T ss_pred             cCCEEEeCCCccCcc
Confidence            666 66655554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.51  E-value=5.8e-08  Score=78.38  Aligned_cols=111  Identities=20%  Similarity=0.187  Sum_probs=64.6

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      .+..+++|++|+++++.+...  +.+....++|++|++++|.         ++.  +..+..+++|+.|+++++.     
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~---------l~~--~~~l~~l~~L~~L~Ls~N~-----   75 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNE---------IRK--LDGFPLLRRLKTLLVNNNR-----   75 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSC---------CCE--ECCCCCCSSCCEEECCSSC-----
T ss_pred             hcCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCC---------CCc--ccccccCCCCCEEECCCCc-----
Confidence            356678888888888777632  3344434588888888863         332  2456778888888887753     


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS  146 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  146 (404)
                       +..+...    +...+++|+.|+++++ .++.......+..+++|+.|+++++.
T Consensus        76 -l~~~~~~----~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           76 -ICRIGEG----LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             -CCEECSC----HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             -ccccCcc----hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence             2222211    1235667777777764 33321110123455666666666653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.51  E-value=3.2e-08  Score=83.64  Aligned_cols=111  Identities=14%  Similarity=0.056  Sum_probs=58.5

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHH
Q 015585          264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR  343 (404)
Q Consensus       264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~  343 (404)
                      .+++|++|+++++ .++.... .....+++|+.|++++|. ++.. -..+.       .+++|+.|+++++ .++.....
T Consensus        86 ~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~l-p~~~~-------~l~~L~~L~L~~N-~l~~~~~~  153 (229)
T 3e6j_A           86 SLTQLTVLDLGTN-QLTVLPS-AVFDRLVHLKELFMCCNK-LTEL-PRGIE-------RLTHLTHLALDQN-QLKSIPHG  153 (229)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCSC-CTTGG-------GCTTCSEEECCSS-CCCCCCTT
T ss_pred             cCCCcCEEECCCC-cCCccCh-hHhCcchhhCeEeccCCc-cccc-Ccccc-------cCCCCCEEECCCC-cCCccCHH
Confidence            3455555555553 3332110 011235677777777664 4311 01112       5788888888884 66543333


Q ss_pred             hhhcCCCCcccEEecCCccccCCC--hHHHHHHHhcCCccEEEeccc
Q 015585          344 WVKRPSFRGLHWLGIGQTRLASKG--NPVITEIHNERPWLTFCLDGC  388 (404)
Q Consensus       344 ~l~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~~l~l~~~~~  388 (404)
                      .+.  .+++|+.|++++|++....  ...+..+..........+.|.
T Consensus       154 ~~~--~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~  198 (229)
T 3e6j_A          154 AFD--RLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGK  198 (229)
T ss_dssp             TTT--TCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSS
T ss_pred             HHh--CCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCc
Confidence            332  4788999999998886432  233444444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.49  E-value=1.5e-08  Score=85.13  Aligned_cols=62  Identities=27%  Similarity=0.356  Sum_probs=27.5

Q ss_pred             CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      .+++|++|++++ +.+.......+..+++|++|++++|.++.... ..+..+++|++|+++++.
T Consensus        54 ~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           54 PYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             TCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCC
Confidence            445555555555 23433333344455555555555554432110 111234455555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.48  E-value=3.5e-08  Score=79.70  Aligned_cols=13  Identities=8%  Similarity=-0.176  Sum_probs=6.6

Q ss_pred             hCCCCceEeecCC
Q 015585          290 AGIGIIDLCVRSC  302 (404)
Q Consensus       290 ~~~~L~~L~l~~~  302 (404)
                      .+++|+.|+++++
T Consensus       138 ~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          138 KVPQVRVLDFQKV  150 (176)
T ss_dssp             HCTTCSEETTEEC
T ss_pred             HCCccceeCCCcC
Confidence            3455555555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.46  E-value=7.9e-09  Score=86.80  Aligned_cols=89  Identities=11%  Similarity=0.042  Sum_probs=48.4

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHH
Q 015585          264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR  343 (404)
Q Consensus       264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~  343 (404)
                      .+++|++|+++++ .++...... ...+++|++|++++|. ++......+.       .+++|+.|+++++ .++.....
T Consensus        79 ~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~  147 (220)
T 2v70_A           79 GASGVNEILLTSN-RLENVQHKM-FKGLESLKTLMLRSNR-ITCVGNDSFI-------GLSSVRLLSLYDN-QITTVAPG  147 (220)
T ss_dssp             TCTTCCEEECCSS-CCCCCCGGG-GTTCSSCCEEECTTSC-CCCBCTTSST-------TCTTCSEEECTTS-CCCCBCTT
T ss_pred             CCCCCCEEECCCC-ccCccCHhH-hcCCcCCCEEECCCCc-CCeECHhHcC-------CCccCCEEECCCC-cCCEECHH
Confidence            3455666666553 332211111 1235667777776664 3321111122       4677888888874 55543333


Q ss_pred             hhhcCCCCcccEEecCCccccC
Q 015585          344 WVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       344 ~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      .+.  .+++|+.|++++|++..
T Consensus       148 ~~~--~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          148 AFD--TLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TTT--TCTTCCEEECCSCCEEC
T ss_pred             Hhc--CCCCCCEEEecCcCCcC
Confidence            333  47788888888888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.45  E-value=3e-08  Score=82.48  Aligned_cols=38  Identities=8%  Similarity=-0.125  Sum_probs=17.6

Q ss_pred             CCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCC
Q 015585          264 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF  303 (404)
Q Consensus       264 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  303 (404)
                      .+++|++|+++++ .++.... .....+++|+.|++++|+
T Consensus       122 ~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          122 KLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             cCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCC
Confidence            3455555655553 3322111 111234666666666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.43  E-value=3.1e-08  Score=83.19  Aligned_cols=9  Identities=22%  Similarity=0.231  Sum_probs=4.9

Q ss_pred             CCcEEEcCC
Q 015585          110 GLESVRLGG  118 (404)
Q Consensus       110 ~L~~L~l~~  118 (404)
                      .++.|++++
T Consensus        33 ~~~~L~L~~   41 (220)
T 2v70_A           33 YTAELRLNN   41 (220)
T ss_dssp             TCSEEECCS
T ss_pred             CCCEEEcCC
Confidence            445555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.43  E-value=3.3e-07  Score=87.75  Aligned_cols=182  Identities=15%  Similarity=0.165  Sum_probs=109.5

Q ss_pred             CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccC
Q 015585           18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN   97 (404)
Q Consensus        18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   97 (404)
                      +|+.|+++++.++. .+..+   +++|++|++++|.         ++.  ++  ..+++|+.|+++++.      +..+.
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~---------l~~--ip--~~l~~L~~L~Ls~N~------l~~ip  116 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNA---------LIS--LP--ELPASLEYLDACDNR------LSTLP  116 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSC---------CSC--CC--CCCTTCCEEECCSSC------CSCCC
T ss_pred             CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCC---------Ccc--cc--cccCCCCEEEccCCC------CCCcc
Confidence            88899998877764 11112   4789999999873         221  12  446888999998753      22222


Q ss_pred             hhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHH
Q 015585           98 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE  177 (404)
Q Consensus        98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~  177 (404)
                      .     +   ..+|+.|+++++ .++.  +..   .+++|+.|+++++. ++.  +.   ..+++|+.|+++++. ++. 
T Consensus       117 ~-----l---~~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N~-L~~-  174 (571)
T 3cvr_A          117 E-----L---PASLKHLDVDNN-QLTM--LPE---LPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNNQ-LTF-  174 (571)
T ss_dssp             C-----C---CTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSC-
T ss_pred             h-----h---hcCCCEEECCCC-cCCC--CCC---cCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCCC-CCC-
Confidence            1     1   128888888885 3332  211   56888888888885 322  11   146788888888875 322 


Q ss_pred             HHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCC-------CEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCc
Q 015585          178 TVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL-------TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT  250 (404)
Q Consensus       178 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~  250 (404)
                       +..+.  ++|+.|+++++ .++.  ++.+..  +|       +.|++++|.++.- ...+. .+++|+.|++++|. ++
T Consensus       175 -lp~l~--~~L~~L~Ls~N-~L~~--lp~~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~-~l~~L~~L~L~~N~-l~  243 (571)
T 3cvr_A          175 -LPELP--ESLEALDVSTN-LLES--LPAVPV--RNHHSEETEIFFRCRENRITHI-PENIL-SLDPTCTIILEDNP-LS  243 (571)
T ss_dssp             -CCCCC--TTCCEEECCSS-CCSS--CCCCC----------CCEEEECCSSCCCCC-CGGGG-GSCTTEEEECCSSS-CC
T ss_pred             -cchhh--CCCCEEECcCC-CCCc--hhhHHH--hhhcccccceEEecCCCcceec-CHHHh-cCCCCCEEEeeCCc-CC
Confidence             11122  78888888884 5542  111221  55       8888888877631 11122 37888888888887 65


Q ss_pred             HHHHH
Q 015585          251 DKGIS  255 (404)
Q Consensus       251 ~~~~~  255 (404)
                      .....
T Consensus       244 ~~~p~  248 (571)
T 3cvr_A          244 SRIRE  248 (571)
T ss_dssp             HHHHH
T ss_pred             CcCHH
Confidence            54433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.39  E-value=6.5e-09  Score=99.86  Aligned_cols=123  Identities=15%  Similarity=0.087  Sum_probs=66.4

Q ss_pred             CCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCC
Q 015585          187 NLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQ  266 (404)
Q Consensus       187 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~  266 (404)
                      .|+.|+++++ .++.  ++.+..+++|+.|++++|.++.  +..-...+++|+.|+++++. ++..  ..+     ..++
T Consensus       442 ~L~~L~Ls~n-~l~~--lp~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~-l~~l--p~l-----~~l~  508 (567)
T 1dce_A          442 DVRVLHLAHK-DLTV--LCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LENV--DGV-----ANLP  508 (567)
T ss_dssp             TCSEEECTTS-CCSS--CCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCC--GGG-----TTCS
T ss_pred             CceEEEecCC-CCCC--CcCccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCC-CCCC--ccc-----CCCC
Confidence            4667777663 4443  2235566777777777776552  11122246677777777665 4331  122     3567


Q ss_pred             CccEEecCCCCCCCHHH-HHHHHHhCCCCceEeecCCCCCCHH--HHHHHHhhCCCcccCCCCcEEec
Q 015585          267 SLTTLDLGYMPGISDDG-ILTIAAAGIGIIDLCVRSCFYVTDA--SVEALARKQPDQEKSKQLRRLDL  331 (404)
Q Consensus       267 ~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~~~~~~~L~~L~l  331 (404)
                      +|+.|+++++ .++... ...+ ..+++|+.|++++|+ ++..  ....+..      .+|+|+.|++
T Consensus       509 ~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N~-l~~~~~~~~~l~~------~lp~L~~L~l  567 (567)
T 1dce_A          509 RLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGNS-LCQEEGIQERLAE------MLPSVSSILT  567 (567)
T ss_dssp             SCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTSG-GGGSSSCTTHHHH------HCTTCSEEEC
T ss_pred             CCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCCc-CCCCccHHHHHHH------HCcccCccCC
Confidence            7777777774 444321 1122 346777777777774 3321  1222222      3677777753

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.37  E-value=5.3e-09  Score=94.60  Aligned_cols=68  Identities=13%  Similarity=0.190  Sum_probs=43.9

Q ss_pred             ccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccc
Q 015585           11 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCR   86 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   86 (404)
                      ..|..+++|++|+|++|.+...........+++++++.+.++        ..++......+..+++|++|+++++.
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~--------N~l~~l~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA--------NNLLYINPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE--------TTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC--------CcccccCchhhhhccccccccccccc
Confidence            357889999999999887653322222234677776554432        13333333456788999999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.34  E-value=2.3e-08  Score=82.51  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=17.3

Q ss_pred             CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585           41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC   85 (404)
Q Consensus        41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   85 (404)
                      +++|++|++++|.         ++.  ++.+..+++|+.|+++++
T Consensus        47 l~~L~~L~ls~n~---------l~~--l~~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           47 LKACKHLALSTNN---------IEK--ISSLSGMENLRILSLGRN   80 (198)
T ss_dssp             TTTCSEEECSEEE---------ESC--CCCHHHHTTCCEEEEEEE
T ss_pred             CCCCCEEECCCCC---------Ccc--ccccccCCCCCEEECCCC
Confidence            5666666666542         222  123445556666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.24  E-value=1.8e-07  Score=77.10  Aligned_cols=57  Identities=21%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHH-HHHHHhhCCCcccCCCCcEEeccCC
Q 015585          266 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDAS-VEALARKQPDQEKSKQLRRLDLCNC  334 (404)
Q Consensus       266 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~~~~~~~L~~L~l~~~  334 (404)
                      ++|++|+++++ .++...  .+ ..+++|+.|++++|. +++.. +..+.       .+++|+.|++++|
T Consensus        93 ~~L~~L~L~~N-~l~~l~--~~-~~l~~L~~L~l~~N~-i~~~~~~~~l~-------~l~~L~~L~l~~N  150 (198)
T 1ds9_A           93 DTLEELWISYN-QIASLS--GI-EKLVNLRVLYMSNNK-ITNWGEIDKLA-------ALDKLEDLLLAGN  150 (198)
T ss_dssp             HHCSEEEEEEE-ECCCHH--HH-HHHHHSSEEEESEEE-CCCHHHHHHHT-------TTTTCSEEEECSC
T ss_pred             CcCCEEECcCC-cCCcCC--cc-ccCCCCCEEECCCCc-CCchhHHHHHh-------cCCCCCEEEecCC
Confidence            45666666654 343321  11 234566666666664 44322 23333       3666777777664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.20  E-value=1.6e-07  Score=77.06  Aligned_cols=109  Identities=22%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             CCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHh
Q 015585          236 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR  315 (404)
Q Consensus       236 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~  315 (404)
                      +++++|+++++. ++... ..+     ..+++|++|+++++ .++......+ ..+++|+.|++++|. ++......+. 
T Consensus        31 ~~l~~L~L~~n~-i~~ip-~~~-----~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~~f~-   99 (193)
T 2wfh_A           31 RDVTELYLDGNQ-FTLVP-KEL-----SNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPRTFD-   99 (193)
T ss_dssp             TTCCEEECCSSC-CCSCC-GGG-----GGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTT-
T ss_pred             CCCCEEECCCCc-CchhH-HHh-----hcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHHHhC-
Confidence            567777777765 33211 112     25667777777764 4433211111 245667777777664 4322111122 


Q ss_pred             hCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcccc
Q 015585          316 KQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA  364 (404)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~  364 (404)
                            .+++|+.|++++ +.++......+.  .+++|+.|++++|++.
T Consensus       100 ------~l~~L~~L~L~~-N~l~~~~~~~~~--~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          100 ------GLKSLRLLSLHG-NDISVVPEGAFN--DLSALSHLAIGANPLY  139 (193)
T ss_dssp             ------TCTTCCEEECCS-SCCCBCCTTTTT--TCTTCCEEECCSSCEE
T ss_pred             ------CCCCCCEEECCC-CCCCeeChhhhh--cCccccEEEeCCCCee
Confidence                  366677777766 345432222222  3666777777766664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.01  E-value=1.8e-06  Score=70.65  Aligned_cols=106  Identities=16%  Similarity=0.224  Sum_probs=43.8

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCC
Q 015585          109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL  188 (404)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  188 (404)
                      ++|++|+++++ .++.  +...+..+++|+.|+++++. ++... ...+..+++|+.|+++++. +.......+..+++|
T Consensus        31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSL  104 (193)
T ss_dssp             TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTC
T ss_pred             CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCC
Confidence            46677777663 3321  11223445566666666553 11100 0111234455555555443 221111123344455


Q ss_pred             CEEeccCCCCCChHHHHhhhCCCCCCEEEccCC
Q 015585          189 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA  221 (404)
Q Consensus       189 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  221 (404)
                      ++|++++ +.+.......+..+++|+.|++++|
T Consensus       105 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          105 RLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCC-CCCCeeChhhhhcCccccEEEeCCC
Confidence            5555544 2333222222334444444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.99  E-value=8.1e-07  Score=72.70  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=15.7

Q ss_pred             CCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCC
Q 015585          110 GLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA  145 (404)
Q Consensus       110 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  145 (404)
                      +|+.|+++++ .++.......+..+++|+.|+++++
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N   64 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC
Confidence            5666666663 2221111111334455555555555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.98  E-value=1.6e-06  Score=70.83  Aligned_cols=127  Identities=18%  Similarity=0.206  Sum_probs=64.4

Q ss_pred             cEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhh-hhcCCCCCceEEecccccCCCCCccccCh
Q 015585           20 RSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQ-SLGSCHHLTGLSLTRCRHNHQGTFKRVND   98 (404)
Q Consensus        20 ~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~   98 (404)
                      +.++++++.+... +..   ..++|++|++++|.         ++..... .++.+++|++|+++++.      +..+..
T Consensus        11 ~~l~~s~~~l~~i-p~~---~~~~l~~L~l~~n~---------i~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~   71 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PRD---IPLHTTELLLNDNE---------LGRISSDGLFGRLPHLVKLELKRNQ------LTGIEP   71 (192)
T ss_dssp             TEEECTTSCCSSC-CSC---CCTTCSEEECCSCC---------CCSBCCSCSGGGCTTCCEEECCSSC------CCCBCT
T ss_pred             CEEEcCCCCcCcC-ccC---CCCCCCEEECCCCc---------CCccCCccccccCCCCCEEECCCCC------CCCcCH
Confidence            5666666555421 111   12367777777753         2221111 24566777777776642      222222


Q ss_pred             hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585           99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL  173 (404)
Q Consensus        99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  173 (404)
                      ..+    ..+++|+.|+++++ .++.... ..+..+++|+.|+++++. ++... ......+++|+.|+++++..
T Consensus        72 ~~~----~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           72 NAF----EGASHIQELQLGEN-KIKEISN-KMFLGLHQLKTLNLYDNQ-ISCVM-PGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TTT----TTCTTCCEEECCSC-CCCEECS-SSSTTCTTCCEEECCSSC-CCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred             hHc----CCcccCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCc-CCeeC-HHHhhcCCCCCEEEeCCCCc
Confidence            222    34567777777764 3332111 113345777777777774 22110 11223567788888877653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.95  E-value=4.1e-06  Score=67.41  Aligned_cols=128  Identities=16%  Similarity=0.095  Sum_probs=64.6

Q ss_pred             CcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccCh
Q 015585           19 LRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVND   98 (404)
Q Consensus        19 L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~   98 (404)
                      .+.++++++.+.... .   ...++|++|++++|.         ++......+..+++|++|+++++.      +..+..
T Consensus         9 ~~~l~~~~~~l~~~p-~---~~~~~l~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~n~------l~~~~~   69 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-T---GIPSSATRLELESNK---------LQSLPHGVFDKLTQLTKLSLSQNQ------IQSLPD   69 (177)
T ss_dssp             TTEEECCSSCCSSCC-T---TCCTTCSEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSC------CCCCCT
T ss_pred             CCEEEecCCCCccCC-C---CCCCCCcEEEeCCCc---------ccEeCHHHhcCcccccEEECCCCc------ceEeCh
Confidence            355666654444211 1   113567777777752         222222234566777777776642      222222


Q ss_pred             hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCC
Q 015585           99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL  173 (404)
Q Consensus        99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  173 (404)
                      ..    ...+++|+.|+++++ .++... ...+..+++|+.|+++++. ++... ......+++|+.|+++++..
T Consensus        70 ~~----~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           70 GV----FDKLTKLTILYLHEN-KLQSLP-NGVFDKLTQLKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             TT----TTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred             hH----ccCCCccCEEECCCC-CccccC-HHHhhCCcccCEEECcCCc-ceEeC-HHHhcCCcccCEEEecCCCe
Confidence            11    134567777777764 333111 1123455777777777764 22110 11223567788888877653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.90  E-value=3.6e-06  Score=67.77  Aligned_cols=39  Identities=26%  Similarity=0.180  Sum_probs=16.2

Q ss_pred             CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585          184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI  223 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  223 (404)
                      .+++|++|+++++ .++......+..+++|+.|++++|.+
T Consensus        50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           50 KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCc
Confidence            3444555555442 33322222233444455555544433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.85  E-value=4.3e-06  Score=76.63  Aligned_cols=196  Identities=13%  Similarity=0.098  Sum_probs=110.6

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      +|..+ +|+.+.+.. .+.......+ ..|++|+++++.++.         ++......+. +.+|+.+.+...      
T Consensus       153 aF~~~-~L~~i~lp~-~l~~I~~~aF-~~c~~L~~l~l~~n~---------l~~I~~~aF~-~~~L~~l~lp~~------  213 (401)
T 4fdw_A          153 AFFNS-TVQEIVFPS-TLEQLKEDIF-YYCYNLKKADLSKTK---------ITKLPASTFV-YAGIEEVLLPVT------  213 (401)
T ss_dssp             TTTTC-CCCEEECCT-TCCEECSSTT-TTCTTCCEEECTTSC---------CSEECTTTTT-TCCCSEEECCTT------
T ss_pred             hcCCC-CceEEEeCC-CccEehHHHh-hCcccCCeeecCCCc---------ceEechhhEe-ecccCEEEeCCc------
Confidence            34443 688888874 2221111112 348889999998752         2222222223 567888888542      


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCC-CCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEcc
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRLL  169 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~  169 (404)
                       ...+.+.++    ..|++|+.+.+... ..+....+    .. .+|+.+.+.... .+...    .+..|++|+.+.+.
T Consensus       214 -l~~I~~~aF----~~~~~L~~l~l~~~l~~I~~~aF----~~-~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          214 -LKEIGSQAF----LKTSQLKTIEIPENVSTIGQEAF----RE-SGITTVKLPNGVTNIASR----AFYYCPELAEVTTY  279 (401)
T ss_dssp             -CCEECTTTT----TTCTTCCCEECCTTCCEECTTTT----TT-CCCSEEEEETTCCEECTT----TTTTCTTCCEEEEE
T ss_pred             -hheehhhHh----hCCCCCCEEecCCCccCcccccc----cc-CCccEEEeCCCccEEChh----HhhCCCCCCEEEeC
Confidence             233444433    56778888888652 12222211    22 578888885541 12221    23477888888886


Q ss_pred             CCCCC----CHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC--ccCHHHHHHHHhcCCCcCEEee
Q 015585          170 WCRLI----TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLSILAQGNLPIMNLCL  243 (404)
Q Consensus       170 ~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~~l~~~~~~L~~L~l  243 (404)
                      ++...    ..-.-.++..|++|+.+.+..  .+..-.-.++..|++|+.+.+..+  .+....    +..| +|+.+.+
T Consensus       280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~a----F~~~-~L~~l~l  352 (401)
T 4fdw_A          280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSA----FNNT-GIKEVKV  352 (401)
T ss_dssp             SSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTS----SSSS-CCCEEEE
T ss_pred             CccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHh----CCCC-CCCEEEE
Confidence            64311    001112345788899998874  355444556678889999988664  222221    1256 8999998


Q ss_pred             cCCC
Q 015585          244 RGCK  247 (404)
Q Consensus       244 ~~~~  247 (404)
                      .++.
T Consensus       353 ~~n~  356 (401)
T 4fdw_A          353 EGTT  356 (401)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            8764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.77  E-value=4.7e-07  Score=83.19  Aligned_cols=291  Identities=12%  Similarity=0.101  Sum_probs=145.6

Q ss_pred             ccccCCCCCcEEeccC--CCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc---
Q 015585           11 SSYYSSFNLRSLSLVL--DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC---   85 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~--~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~---   85 (404)
                      .+|..|.+|+.+.+..  ..+.+..   + ..|++|+++++..+          ++..+-.++..+.+|+.+.+...   
T Consensus        65 ~AF~~c~~L~~i~lp~~i~~I~~~a---F-~~c~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~i~~p~~l~~  130 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPSTVREIGEFA---F-ENCSKLEIINIPDS----------VKMIGRCTFSGCYALKSILLPLMLKS  130 (394)
T ss_dssp             TTTTTCTTEEEEECCTTCCEECTTT---T-TTCTTCCEECCCTT----------CCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred             HHhhCCCCceEEEeCCCccCcchhH---h-hCCCCCcEEEeCCC----------ceEccchhhcccccchhhcccCceee
Confidence            4688899999999974  2333322   2 34899999999753          22222223334444444333211   


Q ss_pred             ---------ccC---CCCCccccChhhHHHHHhcCCCCcEEEcCCCC-CCCHHHHHHHHHhCCCCcEEEecCCC-CCCHH
Q 015585           86 ---------RHN---HQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS-KVSDAGFAAILLSCHSLKKFEVRSAS-FLSDL  151 (404)
Q Consensus        86 ---------~~~---~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~  151 (404)
                               ...   .......+.+.+    ...|++|+.+.+.... .+..    .....|.+|+.+.+.... .+...
T Consensus       131 i~~~aF~~~~~~~~~~~~~~~~i~~~a----F~~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~~~~~~I~~~  202 (394)
T 4fs7_A          131 IGVEAFKGCDFKEITIPEGVTVIGDEA----FATCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLPRNLKIIRDY  202 (394)
T ss_dssp             ECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCCTTCCEECTT
T ss_pred             ecceeeecccccccccCccccccchhh----hcccCCCcEEecCCccceecc----ccccCCCCceEEEcCCCceEeCch
Confidence                     000   001112222222    2568889999986521 1221    124567888888886542 11111


Q ss_pred             HHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC--ccCHHHHH
Q 015585          152 AFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLS  229 (404)
Q Consensus       152 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~  229 (404)
                          .+..+..|+.+.+......-.   .....+..|+.+.+..  .+..-.-.++..+..|+.+.+..+  .+....  
T Consensus       203 ----~F~~~~~L~~i~~~~~~~~i~---~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~--  271 (394)
T 4fs7_A          203 ----CFAECILLENMEFPNSLYYLG---DFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSL--  271 (394)
T ss_dssp             ----TTTTCTTCCBCCCCTTCCEEC---TTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCT--
T ss_pred             ----hhccccccceeecCCCceEee---hhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceeeccc--
Confidence                233566777776654321100   0112456777777754  222222334456677777777654  122111  


Q ss_pred             HHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHH
Q 015585          230 ILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDAS  309 (404)
Q Consensus       230 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  309 (404)
                        ...+..++.+...... +.+..    .    ..+.+|+.+.+..  .+...+-. ....|++|+.+.+...  ++.-+
T Consensus       272 --F~~~~~l~~~~~~~~~-i~~~~----F----~~~~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~~--v~~I~  335 (394)
T 4fs7_A          272 --FYNCSGLKKVIYGSVI-VPEKT----F----YGCSSLTEVKLLD--SVKFIGEE-AFESCTSLVSIDLPYL--VEEIG  335 (394)
T ss_dssp             --TTTCTTCCEEEECSSE-ECTTT----T----TTCTTCCEEEECT--TCCEECTT-TTTTCTTCCEECCCTT--CCEEC
T ss_pred             --cccccccceeccCcee-ecccc----c----ccccccccccccc--ccceechh-hhcCCCCCCEEEeCCc--ccEEh
Confidence              1245666666554332 22211    1    3456777777644  22211111 1234677777777542  22211


Q ss_pred             HHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCc
Q 015585          310 VEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT  361 (404)
Q Consensus       310 ~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~  361 (404)
                      -.++.       +|.+|+.+.+..  .++..+...+.  .|++|+.+.+..+
T Consensus       336 ~~aF~-------~c~~L~~i~lp~--~l~~I~~~aF~--~C~~L~~i~lp~~  376 (394)
T 4fs7_A          336 KRSFR-------GCTSLSNINFPL--SLRKIGANAFQ--GCINLKKVELPKR  376 (394)
T ss_dssp             TTTTT-------TCTTCCEECCCT--TCCEECTTTBT--TCTTCCEEEEEGG
T ss_pred             HHhcc-------CCCCCCEEEECc--cccEehHHHhh--CCCCCCEEEECCC
Confidence            22233       477788887754  24443333343  4778888877644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.76  E-value=1.1e-06  Score=80.68  Aligned_cols=213  Identities=13%  Similarity=0.073  Sum_probs=107.9

Q ss_pred             HHhCCCCcEEEecCCCC-CCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhC
Q 015585          131 LLSCHSLKKFEVRSASF-LSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISC  209 (404)
Q Consensus       131 ~~~~~~L~~L~l~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~  209 (404)
                      ...|.+|+.+.+..... +...    .+..+++|+.+.+...  +....-.++..|..|+.+.+...  ..... .....
T Consensus       158 F~~c~~L~~i~l~~~~~~I~~~----~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~-~~~~~  228 (394)
T 4fs7_A          158 FATCESLEYVSLPDSMETLHNG----LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLG-DFALS  228 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTT----TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEEC-TTTTT
T ss_pred             hcccCCCcEEecCCccceeccc----cccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEee-hhhcc
Confidence            45678888888865421 1111    2346677887777542  21111123446777777766542  11111 11123


Q ss_pred             CCCCCEEEccCC--ccCHHHHHHHHhcCCCcCEEeecCCC-CCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH
Q 015585          210 LRKLTALNLTGA--DITDSGLSILAQGNLPIMNLCLRGCK-RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT  286 (404)
Q Consensus       210 ~~~L~~L~l~~~--~l~~~~l~~l~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  286 (404)
                      ..+|+.+.+...  .+....    ...+..++.+.+.... .+....   +     ..++.++.+..... .+.+.    
T Consensus       229 ~~~l~~i~ip~~~~~i~~~~----f~~~~~l~~~~~~~~~~~i~~~~---F-----~~~~~l~~~~~~~~-~i~~~----  291 (394)
T 4fs7_A          229 KTGVKNIIIPDSFTELGKSV----FYGCTDLESISIQNNKLRIGGSL---F-----YNCSGLKKVIYGSV-IVPEK----  291 (394)
T ss_dssp             TCCCCEEEECTTCCEECSST----TTTCSSCCEEEECCTTCEECSCT---T-----TTCTTCCEEEECSS-EECTT----
T ss_pred             cCCCceEEECCCceeccccc----ccccccceeEEcCCCcceeeccc---c-----ccccccceeccCce-eeccc----
Confidence            467777777553  222111    1246777877775432 111111   1     24556666665442 22211    


Q ss_pred             HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585          287 IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       287 l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                      ....|.+|+.+.+..+  ++.-+-.++.       +|.+|+.+++..  .++..+-..+.  .|++|+.+.+..+ ++.+
T Consensus       292 ~F~~~~~L~~i~l~~~--i~~I~~~aF~-------~c~~L~~i~lp~--~v~~I~~~aF~--~c~~L~~i~lp~~-l~~I  357 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS--VKFIGEEAFE-------SCTSLVSIDLPY--LVEEIGKRSFR--GCTSLSNINFPLS-LRKI  357 (394)
T ss_dssp             TTTTCTTCCEEEECTT--CCEECTTTTT-------TCTTCCEECCCT--TCCEECTTTTT--TCTTCCEECCCTT-CCEE
T ss_pred             cccccccccccccccc--cceechhhhc-------CCCCCCEEEeCC--cccEEhHHhcc--CCCCCCEEEECcc-ccEe
Confidence            1234678888887643  2211112222       478888888854  34443333343  4788888888655 4433


Q ss_pred             ChHHHHHHHhcCCccE-EEecc
Q 015585          367 GNPVITEIHNERPWLT-FCLDG  387 (404)
Q Consensus       367 ~~~~~~~~~~~~~~l~-l~~~~  387 (404)
                      +..+   + ..|++|+ +.+..
T Consensus       358 ~~~a---F-~~C~~L~~i~lp~  375 (394)
T 4fs7_A          358 GANA---F-QGCINLKKVELPK  375 (394)
T ss_dssp             CTTT---B-TTCTTCCEEEEEG
T ss_pred             hHHH---h-hCCCCCCEEEECC
Confidence            3322   2 4666676 66543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.66  E-value=1e-05  Score=80.14  Aligned_cols=85  Identities=16%  Similarity=0.126  Sum_probs=41.6

Q ss_pred             hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCC
Q 015585          133 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRK  212 (404)
Q Consensus       133 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  212 (404)
                      .+++|+.|+|+++. ++  .+......+++|+.|+|+++. +. .....+..+++|++|+|+++ .++. ....+..+++
T Consensus       245 ~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~L~~N-~l~~-lp~~~~~l~~  317 (727)
T 4b8c_D          245 KYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LT-SLPAELGSCFQLKYFYFFDN-MVTT-LPWEFGNLCN  317 (727)
T ss_dssp             GCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CS-SCCSSGGGGTTCSEEECCSS-CCCC-CCSSTTSCTT
T ss_pred             CCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CC-ccChhhcCCCCCCEEECCCC-CCCc-cChhhhcCCC
Confidence            34555555555553 22  111222345566666666544 22 11122345566666666663 3431 1223555666


Q ss_pred             CCEEEccCCccC
Q 015585          213 LTALNLTGADIT  224 (404)
Q Consensus       213 L~~L~l~~~~l~  224 (404)
                      |+.|+|++|.++
T Consensus       318 L~~L~L~~N~l~  329 (727)
T 4b8c_D          318 LQFLGVEGNPLE  329 (727)
T ss_dssp             CCCEECTTSCCC
T ss_pred             ccEEeCCCCccC
Confidence            666666666555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.59  E-value=1.2e-05  Score=73.78  Aligned_cols=217  Identities=16%  Similarity=0.197  Sum_probs=132.7

Q ss_pred             cccCCCCCcEEeccCC--CCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCC
Q 015585           12 SYYSSFNLRSLSLVLD--VITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH   89 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~--~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   89 (404)
                      +|..+ +|+.+.+..+  .+.+..   +..  .+|+++.+...          +...+-..+..|++|+.+++..+.   
T Consensus       131 aF~~~-~L~~i~l~~~i~~I~~~a---F~~--~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~l~l~~n~---  191 (401)
T 4fdw_A          131 AFRNS-QIAKVVLNEGLKSIGDMA---FFN--STVQEIVFPST----------LEQLKEDIFYYCYNLKKADLSKTK---  191 (401)
T ss_dssp             TTTTC-CCSEEECCTTCCEECTTT---TTT--CCCCEEECCTT----------CCEECSSTTTTCTTCCEEECTTSC---
T ss_pred             hcccC-CccEEEeCCCccEECHHh---cCC--CCceEEEeCCC----------ccEehHHHhhCcccCCeeecCCCc---
Confidence            45555 7999999842  233222   222  36999998863          333344456789999999997632   


Q ss_pred             CCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEc
Q 015585           90 QGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRL  168 (404)
Q Consensus        90 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l  168 (404)
                         +..+....+.     +.+|+.+.+...  +..-+-. .+..|++|+.+.+.... .+....+     ...+|+.+.+
T Consensus       192 ---l~~I~~~aF~-----~~~L~~l~lp~~--l~~I~~~-aF~~~~~L~~l~l~~~l~~I~~~aF-----~~~~L~~i~l  255 (401)
T 4fdw_A          192 ---ITKLPASTFV-----YAGIEEVLLPVT--LKEIGSQ-AFLKTSQLKTIEIPENVSTIGQEAF-----RESGITTVKL  255 (401)
T ss_dssp             ---CSEECTTTTT-----TCCCSEEECCTT--CCEECTT-TTTTCTTCCCEECCTTCCEECTTTT-----TTCCCSEEEE
T ss_pred             ---ceEechhhEe-----ecccCEEEeCCc--hheehhh-HhhCCCCCCEEecCCCccCcccccc-----ccCCccEEEe
Confidence               3344444432     578999999752  2211111 25678999999998651 1222222     2268999999


Q ss_pred             cCCCCCCHHHHHHhhCCCCCCEEeccCCCCCC-----hHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEee
Q 015585          169 LWCRLITSETVKKLASSRNLEVLDLGGCKSIA-----DTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCL  243 (404)
Q Consensus       169 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l  243 (404)
                      ...  +..-+-.++..|++|+.+.+.+. ...     .-.-.++..|++|+.+.+..+ ++.-+-.+ +..|.+|+.+.+
T Consensus       256 p~~--i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~a-F~~c~~L~~l~l  330 (401)
T 4fdw_A          256 PNG--VTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGL-LGGNRKVTQLTI  330 (401)
T ss_dssp             ETT--CCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTT-TTTCCSCCEEEE
T ss_pred             CCC--ccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhh-hcCCCCccEEEE
Confidence            542  32222334568999999999773 222     123345678999999999853 32211111 236899999999


Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCccEEecCCC
Q 015585          244 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM  276 (404)
Q Consensus       244 ~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~  276 (404)
                      ...  +...+-..+     ..+ +|+.+.+.+.
T Consensus       331 p~~--l~~I~~~aF-----~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          331 PAN--VTQINFSAF-----NNT-GIKEVKVEGT  355 (401)
T ss_dssp             CTT--CCEECTTSS-----SSS-CCCEEEECCS
T ss_pred             Ccc--ccEEcHHhC-----CCC-CCCEEEEcCC
Confidence            654  332222222     356 8999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.57  E-value=1.4e-05  Score=79.21  Aligned_cols=111  Identities=14%  Similarity=0.055  Sum_probs=76.0

Q ss_pred             HHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhC
Q 015585          130 ILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISC  209 (404)
Q Consensus       130 l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~  209 (404)
                      .+..+++|+.|+++++....   +..-...++.|+.|+|+++. +. .....+..+++|++|+|+++ .++ .....+..
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~  291 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFN---ISANIFKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDLSHN-RLT-SLPAELGS  291 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSC---CCGGGGGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEECTTS-CCS-SCCSSGGG
T ss_pred             hhccCCCCcEEECCCCCCCC---CChhhcCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeCcCC-cCC-ccChhhcC
Confidence            35567889999999885321   11112267899999999875 43 22234668899999999984 566 33455678


Q ss_pred             CCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCc
Q 015585          210 LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT  250 (404)
Q Consensus       210 ~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~  250 (404)
                      +++|++|+|++|.++.  +..-...+++|+.|+|++|. +.
T Consensus       292 l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~-l~  329 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNP-LE  329 (727)
T ss_dssp             GTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSC-CC
T ss_pred             CCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCc-cC
Confidence            8999999999997752  11113357899999999887 44

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.55  E-value=6.8e-05  Score=59.73  Aligned_cols=103  Identities=13%  Similarity=0.035  Sum_probs=62.7

Q ss_pred             CcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccCh
Q 015585           19 LRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVND   98 (404)
Q Consensus        19 L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~   98 (404)
                      .+.++++++.+... +..+   .++|++|++++|.         ++......+..+++|++|+++++.      +..+..
T Consensus        11 ~~~l~~s~n~l~~i-p~~~---~~~l~~L~L~~N~---------i~~~~~~~~~~l~~L~~L~Ls~N~------l~~l~~   71 (170)
T 3g39_A           11 GTTVDCSGKSLASV-PTGI---PTTTQVLYLYDNQ---------ITKLEPGVFDRLTQLTRLDLDNNQ------LTVLPA   71 (170)
T ss_dssp             TTEEECTTSCCSSC-CSCC---CTTCSEEECCSSC---------CCCCCTTTTTTCTTCSEEECCSSC------CCCCCT
T ss_pred             CCEEEeCCCCcCcc-CccC---CCCCcEEEcCCCc---------CCccChhhhcCcccCCEEECCCCC------cCccCh
Confidence            56788887666531 1111   3678888888863         333333446678888888888753      233333


Q ss_pred             hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585           99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS  146 (404)
Q Consensus        99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  146 (404)
                      ..+    ..+++|+.|+++++ .++... ...+..+++|+.|+++++.
T Consensus        72 ~~f----~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           72 GVF----DKLTQLTQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTT----TTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             hhc----cCCCCCCEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence            222    45778888888874 333211 1124567888888888885

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.54  E-value=1.4e-05  Score=63.86  Aligned_cols=107  Identities=14%  Similarity=0.036  Sum_probs=69.6

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHh
Q 015585          265 SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW  344 (404)
Q Consensus       265 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~  344 (404)
                      .+.|++|+++++ .++......+ ..+++|+.|++++|. ++...-..+.       .+++|+.|+++++ .++......
T Consensus        29 ~~~l~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~f~-------~l~~L~~L~L~~N-~l~~~~~~~   97 (170)
T 3g39_A           29 PTTTQVLYLYDN-QITKLEPGVF-DRLTQLTRLDLDNNQ-LTVLPAGVFD-------KLTQLTQLSLNDN-QLKSIPRGA   97 (170)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCCCcEEEcCCC-cCCccChhhh-cCcccCCEEECCCCC-cCccChhhcc-------CCCCCCEEECCCC-ccCEeCHHH
Confidence            468999999985 5543211112 357899999999985 5532111122       5889999999994 666433333


Q ss_pred             hhcCCCCcccEEecCCccccCC--ChHHHHHHHhcCCccEEE
Q 015585          345 VKRPSFRGLHWLGIGQTRLASK--GNPVITEIHNERPWLTFC  384 (404)
Q Consensus       345 l~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~~l~l~  384 (404)
                      +.  .+++|+.|++++|+++..  ....+..+.+..+.....
T Consensus        98 ~~--~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~  137 (170)
T 3g39_A           98 FD--NLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFG  137 (170)
T ss_dssp             TT--TCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEC
T ss_pred             hc--CCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeec
Confidence            33  488999999999998654  234455566666666643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.53  E-value=7.3e-05  Score=59.82  Aligned_cols=103  Identities=10%  Similarity=-0.013  Sum_probs=62.4

Q ss_pred             CcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccCh
Q 015585           19 LRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVND   98 (404)
Q Consensus        19 L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~   98 (404)
                      -+.++++++.+... +..+   .++|++|++++|.         ++......+..+++|+.|+++++.      +..+..
T Consensus        14 ~~~l~~~~n~l~~i-P~~~---~~~L~~L~Ls~N~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~i~~   74 (174)
T 2r9u_A           14 QTLVNCQNIRLASV-PAGI---PTDKQRLWLNNNQ---------ITKLEPGVFDHLVNLQQLYFNSNK------LTAIPT   74 (174)
T ss_dssp             SSEEECCSSCCSSC-CSCC---CTTCSEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCCCCT
T ss_pred             CcEEEeCCCCCCcc-CCCc---CCCCcEEEeCCCC---------ccccCHHHhcCCcCCCEEECCCCC------CCccCh
Confidence            36778877666421 1111   3688888888863         333323446778888888888753      233332


Q ss_pred             hhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585           99 MGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS  146 (404)
Q Consensus        99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  146 (404)
                      ..    ...+++|+.|+++++ .++... ...+..+++|+.|+++++.
T Consensus        75 ~~----~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           75 GV----FDKLTQLTQLDLNDN-HLKSIP-RGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TT----TTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred             hH----hCCcchhhEEECCCC-ccceeC-HHHhccccCCCEEEeCCCC
Confidence            21    145688888888874 333211 1124557888999998885

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.50  E-value=1.5e-05  Score=63.91  Aligned_cols=106  Identities=13%  Similarity=0.040  Sum_probs=65.9

Q ss_pred             CCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHh
Q 015585          265 SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW  344 (404)
Q Consensus       265 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~  344 (404)
                      .+.|++|+++++ .++..... ....+++|+.|++++|. ++......+.       .+++|+.|++++ +.++......
T Consensus        32 ~~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~~~~~-------~l~~L~~L~L~~-N~l~~l~~~~  100 (174)
T 2r9u_A           32 PTDKQRLWLNNN-QITKLEPG-VFDHLVNLQQLYFNSNK-LTAIPTGVFD-------KLTQLTQLDLND-NHLKSIPRGA  100 (174)
T ss_dssp             CTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCS-SCCCCCCTTT
T ss_pred             CCCCcEEEeCCC-CccccCHH-HhcCCcCCCEEECCCCC-CCccChhHhC-------CcchhhEEECCC-CccceeCHHH
Confidence            368999999885 55432111 12357899999999885 5531111111       578999999998 4666433322


Q ss_pred             hhcCCCCcccEEecCCccccCCC--hHHHHHHHhcCCccEE
Q 015585          345 VKRPSFRGLHWLGIGQTRLASKG--NPVITEIHNERPWLTF  383 (404)
Q Consensus       345 l~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~~l~l  383 (404)
                      +.  .+++|+.|++++|.+....  ...+..+.+..+....
T Consensus       101 ~~--~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~  139 (174)
T 2r9u_A          101 FD--NLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVM  139 (174)
T ss_dssp             TT--TCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEE
T ss_pred             hc--cccCCCEEEeCCCCcccccccHHHHHHHHHhcccccc
Confidence            33  4889999999999886442  2334455555554443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.47  E-value=1.4e-05  Score=73.20  Aligned_cols=151  Identities=16%  Similarity=0.242  Sum_probs=75.6

Q ss_pred             cccCCC-CCcEEeccC--CCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccC
Q 015585           12 SYYSSF-NLRSLSLVL--DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHN   88 (404)
Q Consensus        12 ~~~~~~-~L~~L~L~~--~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~   88 (404)
                      +|..+. .|+.+.+..  ..+.+..+    ..|++|+++.+..+..      ..++..+-.++..|.+|+.+.+...   
T Consensus        58 aF~~~~~~L~sI~iP~svt~Ig~~AF----~~C~~L~~i~~~~n~p------~~l~~Ig~~aF~~c~~L~~i~~~~~---  124 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDTVTEIGSNAF----YNCTSLKRVTIQDNKP------SCVKKIGRQAFMFCSELTDIPILDS---  124 (394)
T ss_dssp             TTTTCCSCCCEEEECTTCCEECTTTT----TTCTTCCEEEEGGGCC------CCCCEECTTTTTTCTTCCBCGGGTT---
T ss_pred             hccCCCCcCEEEEECCCeeEEhHHHh----hCCccCceEeecCCCC------CeeeEechhhchhcccceeeccCCc---
Confidence            355553 588888873  33333322    3488888888875410      1233333344556677776665432   


Q ss_pred             CCCCccccChhhHHHHHhcCCCCcEEEcCCC-CCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEE
Q 015585           89 HQGTFKRVNDMGMFLLSEGCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEV  166 (404)
Q Consensus        89 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L  166 (404)
                          ...+....+    ..|.+|+.+.+... ..+.+.    ....|.+|+.+.+.... .+....+     ....|+++
T Consensus       125 ----~~~I~~~aF----~~c~~L~~i~lp~~~~~I~~~----~F~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i  187 (394)
T 4gt6_A          125 ----VTEIDSEAF----HHCEELDTVTIPEGVTSVADG----MFSYCYSLHTVTLPDSVTAIEERAF-----TGTALTQI  187 (394)
T ss_dssp             ----CSEECTTTT----TTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTT-----TTCCCSEE
T ss_pred             ----cceehhhhh----hhhcccccccccceeeeeccc----ceecccccccccccceeeEeccccc-----cccceeEE
Confidence                222333222    45677888777542 112211    13456777777776541 1111111     33567777


Q ss_pred             EccCCCCCCHHHHHHhhCCCCCCEEecc
Q 015585          167 RLLWCRLITSETVKKLASSRNLEVLDLG  194 (404)
Q Consensus       167 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~  194 (404)
                      .+...  +...+..++..|..++.....
T Consensus       188 ~ip~~--~~~i~~~af~~c~~l~~~~~~  213 (394)
T 4gt6_A          188 HIPAK--VTRIGTNAFSECFALSTITSD  213 (394)
T ss_dssp             EECTT--CCEECTTTTTTCTTCCEEEEC
T ss_pred             EECCc--ccccccchhhhccccceeccc
Confidence            76542  111122233456666665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.07  E-value=0.0014  Score=56.00  Aligned_cols=113  Identities=21%  Similarity=0.247  Sum_probs=68.4

Q ss_pred             cccCCCCCcE--EeccCCCCC--hHHHHHHHhhCCCccEEeecCCCCCCcccccccch-hhhh-hhcCCCCCceEEeccc
Q 015585           12 SYYSSFNLRS--LSLVLDVIT--DELLITITASLPFLVELDLEDRPNTEPLARLDLTS-SGLQ-SLGSCHHLTGLSLTRC   85 (404)
Q Consensus        12 ~~~~~~~L~~--L~L~~~~~~--~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~-~l~~~~~L~~L~l~~~   85 (404)
                      .+...+.|+.  ++++.+...  ...+..+...+++|++|+|++|..         +. ..+. .+..+++|+.|+|+++
T Consensus       136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l---------~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRL---------YRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCC---------CCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCC---------CCCccchhHHhhCCCCCEEECCCC
Confidence            3555666666  555544322  123333446689999999999743         22 1222 3458999999999885


Q ss_pred             ccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCH------HHHHHHHHhCCCCcEEEecC
Q 015585           86 RHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSD------AGFAAILLSCHSLKKFEVRS  144 (404)
Q Consensus        86 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~------~~~~~l~~~~~~L~~L~l~~  144 (404)
                      .      +..+  ..+..+ ..+ +|++|+++++. +..      .-...++..+|+|+.|+=..
T Consensus       207 ~------i~~~--~~l~~l-~~l-~L~~L~L~~Np-l~~~~~~~~~y~~~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          207 E------LKSE--RELDKI-KGL-KLEELWLDGNS-LCDTFRDQSTYISAIRERFPKLLRLDGHE  260 (267)
T ss_dssp             C------CCSG--GGGGGG-TTS-CCSEEECTTST-TGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred             c------cCCc--hhhhhc-ccC-CcceEEccCCc-CccccCcchhHHHHHHHHCcccCeECCcC
Confidence            3      2222  122222 223 89999999853 332      22356678899999987543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.93  E-value=0.00012  Score=66.99  Aligned_cols=289  Identities=13%  Similarity=0.156  Sum_probs=142.6

Q ss_pred             ccccCCCCCcEEeccCCC---CChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccccc
Q 015585           11 SSYYSSFNLRSLSLVLDV---ITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRH   87 (404)
Q Consensus        11 ~~~~~~~~L~~L~L~~~~---~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   87 (404)
                      .+|..|.+|+.+.+..+.   +..-.-..+ ..|.+|+.+.+...          ++..+-.++..+.+|+.+.+...  
T Consensus        81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF-~~c~~L~~i~~~~~----------~~~I~~~aF~~c~~L~~i~lp~~--  147 (394)
T 4gt6_A           81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAF-MFCSELTDIPILDS----------VTEIDSEAFHHCEELDTVTIPEG--  147 (394)
T ss_dssp             TTTTTCTTCCEEEEGGGCCCCCCEECTTTT-TTCTTCCBCGGGTT----------CSEECTTTTTTCTTCCEEECCTT--
T ss_pred             HHhhCCccCceEeecCCCCCeeeEechhhc-hhcccceeeccCCc----------cceehhhhhhhhcccccccccce--
Confidence            458899999999987432   221111112 23777887776652          33333445567888999888542  


Q ss_pred             CCCCCccccChhhHHHHHhcCCCCcEEEcCCC-CCCCHHHHHHHHHhCCCCcEEEecCCCC-CCHHHHHHHHcCCCCccE
Q 015585           88 NHQGTFKRVNDMGMFLLSEGCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSASF-LSDLAFHDLTGVPCALVE  165 (404)
Q Consensus        88 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~l~~~~~~~~~L~~  165 (404)
                           ...+.+..+    ..|.+|+.+.+... ..+....+     .+.+|+.+.+..... +...    ....+..+..
T Consensus       148 -----~~~I~~~~F----~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i~ip~~~~~i~~~----af~~c~~l~~  209 (394)
T 4gt6_A          148 -----VTSVADGMF----SYCYSLHTVTLPDSVTAIEERAF-----TGTALTQIHIPAKVTRIGTN----AFSECFALST  209 (394)
T ss_dssp             -----CCEECTTTT----TTCTTCCEEECCTTCCEECTTTT-----TTCCCSEEEECTTCCEECTT----TTTTCTTCCE
T ss_pred             -----eeeecccce----ecccccccccccceeeEeccccc-----cccceeEEEECCcccccccc----hhhhccccce
Confidence                 223333322    46778888887652 12222111     235688888765421 1111    1234556666


Q ss_pred             EEccCCCCCCHHHH------------HHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC--ccCHHHHHHH
Q 015585          166 VRLLWCRLITSETV------------KKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLSIL  231 (404)
Q Consensus       166 L~l~~~~~~~~~~~------------~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~~l  231 (404)
                      ..............            ........+..+.+..  .+....-.++..+.+|+.+.+...  .+....    
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~a----  283 (394)
T 4gt6_A          210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVSIGTGA----  283 (394)
T ss_dssp             EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCEECTTT----
T ss_pred             ecccccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccceecCcc----
Confidence            55433211000000            0000122334444422  222222344567778888887654  222211    


Q ss_pred             HhcCCCcCEEeecCCC-CCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHH
Q 015585          232 AQGNLPIMNLCLRGCK-RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASV  310 (404)
Q Consensus       232 ~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  310 (404)
                      ...|++|+.+.+...- .+++.   .+     ..+.+|+.+.+..  .++..+-. ....|.+|+.+.+..+  ++.-+-
T Consensus       284 F~~c~~L~~i~l~~~i~~I~~~---aF-----~~c~~L~~i~lp~--~v~~I~~~-aF~~C~~L~~i~ip~s--v~~I~~  350 (394)
T 4gt6_A          284 FMNCPALQDIEFSSRITELPES---VF-----AGCISLKSIDIPE--GITQILDD-AFAGCEQLERIAIPSS--VTKIPE  350 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECTT---TT-----TTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEEECTT--CCBCCG
T ss_pred             cccccccccccCCCcccccCce---ee-----cCCCCcCEEEeCC--cccEehHh-HhhCCCCCCEEEECcc--cCEEhH
Confidence            1257778888875321 12222   12     3567888888854  22221111 1235788999988653  332222


Q ss_pred             HHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCcc
Q 015585          311 EALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR  362 (404)
Q Consensus       311 ~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~  362 (404)
                      .++.       +|++|+.+.+.+.    ......+.  .+..|+.+.+..+.
T Consensus       351 ~aF~-------~C~~L~~i~~~~~----~~~~~~~~--~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          351 SAFS-------NCTALNNIEYSGS----RSQWNAIS--TDSGLQNLPVAPGS  389 (394)
T ss_dssp             GGGT-------TCTTCCEEEESSC----HHHHHTCB--CCCCC---------
T ss_pred             hHhh-------CCCCCCEEEECCc----eeehhhhh--ccCCCCEEEeCCCC
Confidence            3344       5889999998773    22233332  47788888776554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.77  E-value=0.001  Score=59.55  Aligned_cols=85  Identities=15%  Similarity=0.158  Sum_probs=39.6

Q ss_pred             hCCCccEEeecC-CCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCC
Q 015585           40 SLPFLVELDLED-RPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGG  118 (404)
Q Consensus        40 ~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~  118 (404)
                      .+++|++|+|++ |         .++......+..+++|+.|+|+++.      +..+.+..+    ..+++|+.|+|++
T Consensus        29 ~~~~L~~L~l~~~n---------~l~~~~~~~~~~l~~L~~L~l~~N~------l~~~~~~~~----~~l~~L~~L~l~~   89 (347)
T 2ifg_A           29 GAENLTELYIENQQ---------HLQHLELRDLRGLGELRNLTIVKSG------LRFVAPDAF----HFTPRLSRLNLSF   89 (347)
T ss_dssp             SCSCCSEEECCSCS---------SCCEECGGGSCSCCCCSEEECCSSC------CCEECTTGG----GSCSCCCEEECCS
T ss_pred             CCCCeeEEEccCCC---------CCCCcChhHhccccCCCEEECCCCc------cceeCHHHh----cCCcCCCEEeCCC
Confidence            355666666664 4         2222222335566666666666532      222222221    3456666666666


Q ss_pred             CCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 015585          119 FSKVSDAGFAAILLSCHSLKKFEVRSAS  146 (404)
Q Consensus       119 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~  146 (404)
                      + .++... ...+..++ |+.|++.++.
T Consensus        90 N-~l~~~~-~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           90 N-ALESLS-WKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             S-CCSCCC-STTTCSCC-CCEEECCSSC
T ss_pred             C-ccceeC-HHHcccCC-ceEEEeeCCC
Confidence            3 322110 00111222 6667766664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.71  E-value=0.004  Score=53.06  Aligned_cols=61  Identities=21%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             CCCCCCEEeccCCCCCChH-HH-HhhhCCCCCCEEEccCCccCHH-HHHHHHhcCCCcCEEeecCCC
Q 015585          184 SSRNLEVLDLGGCKSIADT-CL-RSISCLRKLTALNLTGADITDS-GLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~-~~-~~l~~~~~L~~L~l~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      .+++|+.|+|++ +.+... .+ ..+..+++|+.|+|++|.+++. .+..+. .+ +|++|.+.+++
T Consensus       168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~-~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT-TS-CCSEEECTTST
T ss_pred             hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc-cC-CcceEEccCCc
Confidence            355555555555 233321 11 1223455566666655555432 111111 12 56666665555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.43  E-value=0.0013  Score=58.83  Aligned_cols=36  Identities=11%  Similarity=0.010  Sum_probs=16.4

Q ss_pred             CCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccC
Q 015585          159 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG  195 (404)
Q Consensus       159 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  195 (404)
                      .+++|+.|+|+++. +.......+..+++|++|+|++
T Consensus        54 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           54 GLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred             cccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence            44555555555543 2222222334455555555555

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.91  E-value=0.16  Score=45.79  Aligned_cols=124  Identities=13%  Similarity=0.121  Sum_probs=65.8

Q ss_pred             cCCCCcEEEcCCC-CCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhC
Q 015585          107 GCKGLESVRLGGF-SKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLAS  184 (404)
Q Consensus       107 ~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~  184 (404)
                      .+.+|+.+.+... ..+...    ....|.+|+.+.+.... .+...    .+..+..|+.+.+...  +...+-.++..
T Consensus       215 ~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~~--i~~i~~~aF~~  284 (379)
T 4h09_A          215 YGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYAK--VKTVPYLLCSG  284 (379)
T ss_dssp             TCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECCC--CSEECTTTTTT
T ss_pred             cccccceeeeccceeEEccc----cccCCccceEEEcCCCccEeCcc----ccceeehhcccccccc--ceecccccccc
Confidence            4566777766441 111111    13456777777776541 11111    2235667777777542  22222223456


Q ss_pred             CCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCC--ccCHHHHHHHHhcCCCcCEEeecC
Q 015585          185 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLSILAQGNLPIMNLCLRG  245 (404)
Q Consensus       185 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~l~~l~~~~~~L~~L~l~~  245 (404)
                      |++|+.+.+.. ..+..-.-.++..|.+|+.+.+..+  .+.+..+    ..|.+|+.+.+..
T Consensus       285 c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF----~~C~~L~~i~ip~  342 (379)
T 4h09_A          285 CSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAF----KNCKALSTISYPK  342 (379)
T ss_dssp             CTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCCCCCCT
T ss_pred             ccccccccccc-cccceehhhhhcCCCCCCEEEcCccccEEHHHHh----hCCCCCCEEEECC
Confidence            78888888765 2344333445667788888888653  2332222    2577787777743

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.73  E-value=0.096  Score=39.08  Aligned_cols=38  Identities=16%  Similarity=0.143  Sum_probs=16.5

Q ss_pred             cccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585          352 GLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH  393 (404)
Q Consensus       352 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~  393 (404)
                      +|+.|++++|.++......+    ..+++++ +.+.+|++.|+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f----~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLL----DALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTG----GGCTTCCEEECCSSCCBCS
T ss_pred             CCCEEECCCCcCCccChhhh----hhccccCEEEecCCCeecc
Confidence            45555555555444322211    2334444 55555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=84.01  E-value=0.52  Score=42.29  Aligned_cols=126  Identities=18%  Similarity=0.238  Sum_probs=77.5

Q ss_pred             cccCCCCCcEEeccC--CCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCC
Q 015585           12 SYYSSFNLRSLSLVL--DVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH   89 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~--~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   89 (404)
                      .+..+.+|+.+.+..  ..+....    ...+..|+++.+..+          ++..+-.++..+.+|+.+.+...    
T Consensus       212 ~f~~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~----------v~~I~~~aF~~~~~l~~i~l~~~----  273 (379)
T 4h09_A          212 GFSYGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKN----------VTSIGSFLLQNCTALKTLNFYAK----  273 (379)
T ss_dssp             TTTTCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTT----------CCEECTTTTTTCTTCCEEEECCC----
T ss_pred             ccccccccceeeeccceeEEcccc----ccCCccceEEEcCCC----------ccEeCccccceeehhcccccccc----
Confidence            466778888888874  2222211    134788999998763          33333445667888999888542    


Q ss_pred             CCCccccChhhHHHHHhcCCCCcEEEcCCC--CCCCHHHHHHHHHhCCCCcEEEecCC-CCCCHHHHHHHHcCCCCccEE
Q 015585           90 QGTFKRVNDMGMFLLSEGCKGLESVRLGGF--SKVSDAGFAAILLSCHSLKKFEVRSA-SFLSDLAFHDLTGVPCALVEV  166 (404)
Q Consensus        90 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L  166 (404)
                         ...+....+    ..|++|+.+.+.+.  ..+.+.    .+..|.+|+.+.+... ..+...    .+..|.+|+++
T Consensus       274 ---i~~i~~~aF----~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i  338 (379)
T 4h09_A          274 ---VKTVPYLLC----SGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTI  338 (379)
T ss_dssp             ---CSEECTTTT----TTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCC
T ss_pred             ---ceecccccc----ccccccccccccccccceehhh----hhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEE
Confidence               222333322    57889999998752  122222    2567899999999654 222222    23478889988


Q ss_pred             EccC
Q 015585          167 RLLW  170 (404)
Q Consensus       167 ~l~~  170 (404)
                      .+..
T Consensus       339 ~ip~  342 (379)
T 4h09_A          339 SYPK  342 (379)
T ss_dssp             CCCT
T ss_pred             EECC
Confidence            8854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	404
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 8e-08
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 24/224 (10%)

Query: 15  SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSC 74
           S F ++ + L   VI    L  I +    L  L LE          L L+   + +L   
Sbjct: 44  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE---------GLRLSDPIVNTLAKN 94

Query: 75  HHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSE----GCKGLESVRLGGFSKVSDAGFAAI 130
            +L  L+L+ C    +   + +      L            E       + VS+      
Sbjct: 95  SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154

Query: 131 LLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEV 190
           L       +                L      LV + L    ++ ++  ++      L+ 
Sbjct: 155 LSGYRKNLQKSD----------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204

Query: 191 LDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQG 234
           L L  C  I    L  +  +  L  L + G  + D  L +L + 
Sbjct: 205 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEA 247

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 185 SRNLEVLDLGGCKSIADTCLRSI-SCLRKLTALNLTGADITDSGLSILAQG---NLPIMN 240
           S +++ LD+  C+ ++D     +   L++   + L    +T++    ++     N  +  
Sbjct: 1   SLDIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 241 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 276
           L LR  + + D G+  +L    T S  +  L L   
Sbjct: 60  LNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 9e-05
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 169 LWCRLITSETVKKLASS-RNLEVLDLGGCKSIADTCLRSIS----CLRKLTALNLTGADI 223
           + C  ++     +L    +  +V+ L  C  + +   + IS        L  LNL   ++
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNEL 67

Query: 224 TDSGLSILAQGNLPIMNLCLR 244
            D G+  + QG L   +  ++
Sbjct: 68  GDVGVHCVLQG-LQTPSCKIQ 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	404
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.92
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.81
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.76
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.72
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.43
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.17
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.14
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.11
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.1
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.03
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.02
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.99
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.97
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.95
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.89
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.8
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.36
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.23
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.06
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.78
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.97
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.52

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-23  Score=182.28  Aligned_cols=250  Identities=16%  Similarity=0.233  Sum_probs=203.1

Q ss_pred             cEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhh-CCCCCCE
Q 015585          112 ESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEV  190 (404)
Q Consensus       112 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~  190 (404)
                      +.+|+++ ..+....+..+...  ....+++..... ... . ........|++|++++|. +.+..+..+. +|++|++
T Consensus         3 ~~lDLs~-~~l~~~~l~~l~~~--~~~~lrl~~~~~-~~~-~-~~~~~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~   75 (284)
T d2astb2           3 QTLDLTG-KNLHPDVTGRLLSQ--GVIAFRCPRSFM-DQP-L-AEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQN   75 (284)
T ss_dssp             SEEECTT-CBCCHHHHHHHHHT--TCSEEECTTCEE-CSC-C-CSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSE
T ss_pred             CEEECCC-CCCCchHHHHHHhc--cceEeecccccc-ccc-h-hhhccCCCCCEEECCCCc-cCHHHHHHHHHhCCCccc
Confidence            5789988 46666666666553  455666654421 000 0 001134689999999875 7777776654 7999999


Q ss_pred             EeccCCCCCChHHHHhhhCCCCCCEEEccCC-ccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCcc
Q 015585          191 LDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLT  269 (404)
Q Consensus       191 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~  269 (404)
                      |++.+| .+++..+..++.+++|++|++++| .+++.++..++..+++|++|++++|..+++.++.....   ..++.|+
T Consensus        76 L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~---~~~~~L~  151 (284)
T d2astb2          76 LSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA---HVSETIT  151 (284)
T ss_dssp             EECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH---HSCTTCC
T ss_pred             cccccc-CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc---ccccccc
Confidence            999997 688888899999999999999996 89999999999999999999999998899888765442   3567999


Q ss_pred             EEecCCC-CCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcC
Q 015585          270 TLDLGYM-PGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRP  348 (404)
Q Consensus       270 ~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~  348 (404)
                      .|++++| ..+++.++..+...||+|++|++++|..+++.++..+++       +++|++|++++|+.+++.++..+.  
T Consensus       152 ~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~-------~~~L~~L~L~~C~~i~~~~l~~L~--  222 (284)
T d2astb2         152 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-------LNYLQHLSLSRCYDIIPETLLELG--  222 (284)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-------CTTCCEEECTTCTTCCGGGGGGGG--
T ss_pred             hhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc-------cCcCCEEECCCCCCCChHHHHHHh--
Confidence            9999987 468999999998899999999999998899998888875       999999999999999999988876  


Q ss_pred             CCCcccEEecCCccccCCChHHHHHHHhcCCccEEEe
Q 015585          349 SFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCL  385 (404)
Q Consensus       349 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~l~~  385 (404)
                      .+|+|+.|+++++.    .+..+..+++.+|.+++..
T Consensus       223 ~~~~L~~L~l~~~~----~d~~l~~l~~~lp~L~i~~  255 (284)
T d2astb2         223 EIPTLKTLQVFGIV----PDGTLQLLKEALPHLQINC  255 (284)
T ss_dssp             GCTTCCEEECTTSS----CTTCHHHHHHHSTTSEESC
T ss_pred             cCCCCCEEeeeCCC----CHHHHHHHHHhCccccccC
Confidence            48999999999983    6778889999999998743

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.3e-24  Score=184.13  Aligned_cols=209  Identities=18%  Similarity=0.271  Sum_probs=179.9

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      .....+|++|+++++.+++..+..+...|++|++|++.+|         .+++..+..++.+++|++|++++|.      
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~---------~l~~~~~~~l~~~~~L~~L~Ls~c~------  106 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------RLSDPIVNTLAKNSNLVRLNLSGCS------  106 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------BCCHHHHHHHTTCTTCSEEECTTCB------
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc---------CCCcHHHHHHhcCCCCcCccccccc------
Confidence            3455689999999888998888888888999999999996         5677888888899999999998874      


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHH-hCCCCcEEEecCC-CCCCHHHHHHHHcCCCCccEEEccC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILL-SCHSLKKFEVRSA-SFLSDLAFHDLTGVPCALVEVRLLW  170 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~-~~~~~~~l~~~~~~~~~L~~L~l~~  170 (404)
                        .+++.++..+...+++|++|++++|..+++.++...+. .+++|+.|+++++ ..+++..+..+...+|+|++|++++
T Consensus       107 --~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         107 --GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             --SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             --cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence              47888888888889999999999998898888765544 4579999999987 4578888888888899999999999


Q ss_pred             CCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcC
Q 015585          171 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM  239 (404)
Q Consensus       171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~  239 (404)
                      |..+++..+..++++++|++|++++|..+++.++..++.+|+|+.|++.++ +++.++..+...+|+|+
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence            888888888888899999999999998899988888889999999999887 78888888887788776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.5e-22  Score=184.94  Aligned_cols=345  Identities=19%  Similarity=0.225  Sum_probs=174.6

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhh----cCCCCCceEEecccccCCCCC
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL----GSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      ++|+.||++++.+++..+..+...++++++|+|.+|         .+++.++..+    ..+++|+.|+++++       
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~---------~i~~~~~~~l~~~L~~~~~L~~LdLs~N-------   65 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC---------GLTEARCKDISSALRVNPALAELNLRSN-------   65 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS---------CCCHHHHHHHHHHHHTCTTCCEEECTTC-------
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC---------CCCHHHHHHHHHHHhcCCCCCEEECcCC-------
Confidence            357777777777777777776666777777777776         3555554443    46777777777664       


Q ss_pred             ccccChhhHHHHHhcC----CCCcEEEcCCCCCCCHHHHHHH---HHhCCCCcEEEecCCCCCCHHHHHHH---------
Q 015585           93 FKRVNDMGMFLLSEGC----KGLESVRLGGFSKVSDAGFAAI---LLSCHSLKKFEVRSASFLSDLAFHDL---------  156 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~l~~~---------  156 (404)
                        .+.+.++..+...+    ++|++|++++| .+++.++..+   +..+++|++|+++++. ++...+..+         
T Consensus        66 --~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~  141 (460)
T d1z7xw1          66 --ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQC  141 (460)
T ss_dssp             --CCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTC
T ss_pred             --cCChHHHHHHHHHHhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc-chhhhhhhhhhccccccc
Confidence              25555555554432    35777777775 4555444333   3345677777776653 222111111         


Q ss_pred             -----------------------HcCCCCccE-----------------------------EEccCCCCCCHH---HHHH
Q 015585          157 -----------------------TGVPCALVE-----------------------------VRLLWCRLITSE---TVKK  181 (404)
Q Consensus       157 -----------------------~~~~~~L~~-----------------------------L~l~~~~~~~~~---~~~~  181 (404)
                                             ....+.++.                             +.+.++......   ....
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  221 (460)
T d1z7xw1         142 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI  221 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccc
Confidence                                   111123333                             333332211110   1111


Q ss_pred             hhCCCCCCEEeccCCCCCChHHHHh-----hhCCCCCCEEEccCCccCHHHHHHHH---hcCCCcCEEeecCCCCCcHHH
Q 015585          182 LASSRNLEVLDLGGCKSIADTCLRS-----ISCLRKLTALNLTGADITDSGLSILA---QGNLPIMNLCLRGCKRVTDKG  253 (404)
Q Consensus       182 l~~~~~L~~L~l~~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~l~~~~l~~l~---~~~~~L~~L~l~~~~~l~~~~  253 (404)
                      +...+.++.+.+.++ ...+.....     ......++.++++++.+.......+.   ...+.++.++++++. +++.+
T Consensus       222 l~~~~~~~~l~~~~n-~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~  299 (460)
T d1z7xw1         222 VASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG  299 (460)
T ss_dssp             HHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH
T ss_pred             ccccccccccchhhc-cccccccchhhccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence            223455566666552 333222211     12345666666666666554433222   235566666666654 55555


Q ss_pred             HHHHHhhcCCCCCCccEEecCCCCCCCHHHHHH---HHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEe
Q 015585          254 ISHLLCVGGTISQSLTTLDLGYMPGISDDGILT---IAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLD  330 (404)
Q Consensus       254 ~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~  330 (404)
                      +..+........+.|+.+.++++ .+++.+...   ....+++|++|+|++|. ++++++..++..+..  ..+.|++|+
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~--~~~~L~~L~  375 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQ--PGSVLRVLW  375 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTS--TTCCCCEEE
T ss_pred             cchhhcccccccccccccccccc-chhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhc--ccCCCCEEE
Confidence            54443211123345666666665 444433322   22344566666666663 666665555543220  244566666


Q ss_pred             ccCCCCCCHHHHHhhh--cCCCCcccEEecCCccccCCChHHHHHHHh----cCCccE-EEecccccc
Q 015585          331 LCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASKGNPVITEIHN----ERPWLT-FCLDGCEIG  391 (404)
Q Consensus       331 l~~~~~i~~~~~~~l~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~----~~~~l~-l~~~~~~~~  391 (404)
                      +++| .+++.++..+.  ...+++|++|++++|.+   +++.+..+++    ....++ +.+.++.+.
T Consensus       376 Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i---~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         376 LADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL---GDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             CTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC---CHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             CCCC-CCChHHHHHHHHHHhcCCCCCEEECCCCcC---CHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            6665 56655554432  11356666666666665   3333333322    222344 555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.2e-17  Score=153.38  Aligned_cols=219  Identities=21%  Similarity=0.263  Sum_probs=164.8

Q ss_pred             HHHcCCCCccEEEccCCCCCCHHHHHH----hh-CCCCCCEEeccCCCCCChHHHH----hhhCCCCCCEEEccCCccCH
Q 015585          155 DLTGVPCALVEVRLLWCRLITSETVKK----LA-SSRNLEVLDLGGCKSIADTCLR----SISCLRKLTALNLTGADITD  225 (404)
Q Consensus       155 ~~~~~~~~L~~L~l~~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~  225 (404)
                      ......+.++.+.+.++. ..+..+..    .. ....++.++++++ .+......    .+...+.++.++++.+.+++
T Consensus       220 ~~l~~~~~~~~l~~~~n~-~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~  297 (460)
T d1z7xw1         220 GIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGD  297 (460)
T ss_dssp             HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             ccccccccccccchhhcc-ccccccchhhcccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            344467889999998865 33333222    12 4789999999985 55544332    34568899999999999999


Q ss_pred             HHHHHHHh----cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHh----CCCCceE
Q 015585          226 SGLSILAQ----GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA----GIGIIDL  297 (404)
Q Consensus       226 ~~l~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L  297 (404)
                      .++..++.    ....|+.+.++++. +++.+...+.. .....++|++|+++++ .+++.++..+++.    .+.|++|
T Consensus       298 ~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~-~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L  374 (460)
T d1z7xw1         298 EGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSS-VLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL  374 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH-HHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cccchhhccccccccccccccccccc-hhhhhhhhccc-ccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEE
Confidence            88877754    34679999999886 77666554431 0034678999999996 7888887776543    4679999


Q ss_pred             eecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhh---cCCCCcccEEecCCccccCCChHHHHHH
Q 015585          298 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK---RPSFRGLHWLGIGQTRLASKGNPVITEI  374 (404)
Q Consensus       298 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~  374 (404)
                      ++++| .+++.++.+++..+.   .+++|++|++++ +.+++.++..+.   ......|+.|++.++.+.....+.+..+
T Consensus       375 ~Ls~n-~i~~~~~~~l~~~l~---~~~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l  449 (460)
T d1z7xw1         375 WLADC-DVSDSSCSSLAATLL---ANHSLRELDLSN-NCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL  449 (460)
T ss_dssp             ECTTS-CCCHHHHHHHHHHHH---HCCCCCEEECCS-SSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHH
T ss_pred             ECCCC-CCChHHHHHHHHHHh---cCCCCCEEECCC-CcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHH
Confidence            99999 599999888877555   689999999999 589998887664   1234579999999999876667788888


Q ss_pred             HhcCCccEE
Q 015585          375 HNERPWLTF  383 (404)
Q Consensus       375 ~~~~~~l~l  383 (404)
                      .+..|++++
T Consensus       450 ~~~~~~l~~  458 (460)
T d1z7xw1         450 EKDKPSLRV  458 (460)
T ss_dssp             HHHCTTSEE
T ss_pred             HHhCCCCEE
Confidence            899999884

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.76  E-value=1.7e-16  Score=141.64  Aligned_cols=253  Identities=17%  Similarity=0.156  Sum_probs=165.3

Q ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHh---CCCCcEEEecCCCC--CC---HHH---HHHHHcCCCCccEEEccCCCCC
Q 015585          106 EGCKGLESVRLGGFSKVSDAGFAAILLS---CHSLKKFEVRSASF--LS---DLA---FHDLTGVPCALVEVRLLWCRLI  174 (404)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~--~~---~~~---l~~~~~~~~~L~~L~l~~~~~~  174 (404)
                      .....|++|+++++ .+++.++..+...   .++|+.++++++..  ..   ...   +......+++|++|+++++. +
T Consensus        28 ~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i  105 (344)
T d2ca6a1          28 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F  105 (344)
T ss_dssp             HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred             hhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-c
Confidence            34556666766663 5666665555433   35666666665421  11   111   22333456677777777654 4


Q ss_pred             CHHHHHHh----hCCCCCCEEeccCCCCCChHHHHhh-------------hCCCCCCEEEccCCccCHHHHHHHHh---c
Q 015585          175 TSETVKKL----ASSRNLEVLDLGGCKSIADTCLRSI-------------SCLRKLTALNLTGADITDSGLSILAQ---G  234 (404)
Q Consensus       175 ~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~l~~~~l~~l~~---~  234 (404)
                      ++.++..+    ..+++|++|++++| .+++.+...+             ...+.|+.+.++.+.+++.+...++.   .
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~  184 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  184 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             ccccccchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence            44333333    25677777777774 4544333222             24678889999888888776655543   5


Q ss_pred             CCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCCCCCCHHHHH
Q 015585          235 NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASVE  311 (404)
Q Consensus       235 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~  311 (404)
                      ++.|+.|++++|. ++++++..+.......+++|+.|+++++ .+++.+...+.   ..+++|++|++++|. +++.++.
T Consensus       185 ~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~  261 (344)
T d2ca6a1         185 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAA  261 (344)
T ss_dssp             CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred             hhhhccccccccc-ccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCc-cCchhhH
Confidence            7889999998886 7777655433212246788999999885 67777766554   457889999999995 9998888


Q ss_pred             HHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhc---CCCCcccEEecCCccccCC
Q 015585          312 ALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       312 ~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~l~~~  366 (404)
                      .++..+... ..+.|+.|+++++ .++..++..+..   ..+++|+.|++++|.+...
T Consensus       262 ~l~~~l~~~-~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         262 AVVDAFSKL-ENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHTC-SSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHhhhc-cCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            887654310 2467999999994 788887766642   2478899999999998653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.72  E-value=4.4e-16  Score=138.94  Aligned_cols=255  Identities=18%  Similarity=0.162  Sum_probs=188.1

Q ss_pred             HHHHHhCCCCcEEEecCCCCCCHHHHHHHH---cCCCCccEEEccCCCC--C---CHHHHHH----hhCCCCCCEEeccC
Q 015585          128 AAILLSCHSLKKFEVRSASFLSDLAFHDLT---GVPCALVEVRLLWCRL--I---TSETVKK----LASSRNLEVLDLGG  195 (404)
Q Consensus       128 ~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~--~---~~~~~~~----l~~~~~L~~L~l~~  195 (404)
                      ...+.....|+.|+++++. ++...+..+.   ...+.|+.++++++..  .   ....+..    +..+++|++|++++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            3346677999999999984 7777766654   4468999999987632  1   1223333    44789999999998


Q ss_pred             CCCCChHHHHhh----hCCCCCCEEEccCCccCHHHHHHHHh------------cCCCcCEEeecCCCCCcHHHHHHHHh
Q 015585          196 CKSIADTCLRSI----SCLRKLTALNLTGADITDSGLSILAQ------------GNLPIMNLCLRGCKRVTDKGISHLLC  259 (404)
Q Consensus       196 ~~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~~~l~~l~~------------~~~~L~~L~l~~~~~l~~~~~~~l~~  259 (404)
                      | .+++..+..+    ...++|++|++.+|.+++.+...++.            ..+.|+.+.++++. +++.++..+..
T Consensus       103 n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~  180 (344)
T d2ca6a1         103 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK  180 (344)
T ss_dssp             C-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH
T ss_pred             c-ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc-ccccccccccc
Confidence            5 6666555443    46899999999999887765444432            46789999998876 77666554431


Q ss_pred             hcCCCCCCccEEecCCCCCCCHHHHHHH----HHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCC
Q 015585          260 VGGTISQSLTTLDLGYMPGISDDGILTI----AAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI  335 (404)
Q Consensus       260 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~  335 (404)
                       .....+.|++|+++++ .+++.++..+    ...+++|+.|++++|. +++.+...++..+.   .+++|+.|++++| 
T Consensus       181 -~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~---~~~~L~~L~Ls~n-  253 (344)
T d2ca6a1         181 -TFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALK---SWPNLRELGLNDC-  253 (344)
T ss_dssp             -HHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGG---GCTTCCEEECTTC-
T ss_pred             -hhhhhhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-cccccccccccccc---ccccchhhhhhcC-
Confidence             0135678999999996 7888775543    2347899999999995 99999988887766   7999999999997 


Q ss_pred             CCCHHHHHhhh----cCCCCcccEEecCCccccCCChHHHHHH----HhcCCccE-EEeccccccccCC
Q 015585          336 GLSVDSLRWVK----RPSFRGLHWLGIGQTRLASKGNPVITEI----HNERPWLT-FCLDGCEIGCHDG  395 (404)
Q Consensus       336 ~i~~~~~~~l~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~----~~~~~~l~-l~~~~~~~~~~~~  395 (404)
                      .+++.+...+.    ....++|++|++++|.+   +.+.+..+    ..+.+.++ +++.+|.+..+++
T Consensus       254 ~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i---~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~  319 (344)
T d2ca6a1         254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI---ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  319 (344)
T ss_dssp             CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC---BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ccCchhhHHHHHHhhhccCCCCCEEECCCCcC---ChHHHHHHHHHHHccCCCCCEEECCCCcCCCcch
Confidence            79988777664    22367899999999998   44444444    34688898 9999999976543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=1.6e-14  Score=130.72  Aligned_cols=303  Identities=17%  Similarity=0.218  Sum_probs=186.9

Q ss_pred             cCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCc
Q 015585           14 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF   93 (404)
Q Consensus        14 ~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   93 (404)
                      ..+.+|++|+++++.+++  +..+ +.+++|++|++++|.         +++  +..++.+++|++|+++++.      +
T Consensus        41 ~~l~~l~~L~l~~~~I~~--l~gl-~~L~nL~~L~Ls~N~---------l~~--l~~l~~L~~L~~L~L~~n~------i  100 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKS--IDGV-EYLNNLTQINFSNNQ---------LTD--ITPLKNLTKLVDILMNNNQ------I  100 (384)
T ss_dssp             HHHTTCCEEECCSSCCCC--CTTG-GGCTTCCEEECCSSC---------CCC--CGGGTTCTTCCEEECCSSC------C
T ss_pred             HHhCCCCEEECCCCCCCC--cccc-ccCCCCCEEeCcCCc---------CCC--CccccCCcccccccccccc------c
Confidence            345678888888877764  2333 348889999988863         332  2347788888899888764      1


Q ss_pred             cccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCC-----------------------CCC-
Q 015585           94 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS-----------------------FLS-  149 (404)
Q Consensus        94 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-----------------------~~~-  149 (404)
                      ..+.+      ...+++|+.|+++++ ..++...   ......+.......+.                       ... 
T Consensus       101 ~~i~~------l~~l~~L~~L~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (384)
T d2omza2         101 ADITP------LANLTNLTGLTLFNN-QITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP  170 (384)
T ss_dssp             CCCGG------GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG
T ss_pred             ccccc------ccccccccccccccc-ccccccc---ccccccccccccccccccccccccccccccccccccccchhhh
Confidence            22221      246788888888764 2222111   0111222222111100                       000 


Q ss_pred             ---------------HHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585          150 ---------------DLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT  214 (404)
Q Consensus       150 ---------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  214 (404)
                                     ..........++.++.+.++++. +..  +.....+++|++|+++++ .+.+  +..+..+++|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-i~~--~~~~~~~~~L~~L~l~~n-~l~~--~~~l~~l~~L~  244 (384)
T d2omza2         171 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISD--ITPLGILTNLDELSLNGN-QLKD--IGTLASLTNLT  244 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCC--CGGGGGCTTCCEEECCSS-CCCC--CGGGGGCTTCS
T ss_pred             hccccccccccccccccccccccccccccceeeccCCc-cCC--CCcccccCCCCEEECCCC-CCCC--cchhhcccccc
Confidence                           00001122356788889888764 322  223456789999999885 4543  34566789999


Q ss_pred             EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCC
Q 015585          215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI  294 (404)
Q Consensus       215 ~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L  294 (404)
                      .|++.++.+++..  . ...+++|++|.++++. +...  ..+     ..++.++.+.+..+ .++..  .. ...++++
T Consensus       245 ~L~l~~n~l~~~~--~-~~~~~~L~~L~l~~~~-l~~~--~~~-----~~~~~l~~l~~~~n-~l~~~--~~-~~~~~~l  309 (384)
T d2omza2         245 DLDLANNQISNLA--P-LSGLTKLTELKLGANQ-ISNI--SPL-----AGLTALTNLELNEN-QLEDI--SP-ISNLKNL  309 (384)
T ss_dssp             EEECCSSCCCCCG--G-GTTCTTCSEEECCSSC-CCCC--GGG-----TTCTTCSEEECCSS-CCSCC--GG-GGGCTTC
T ss_pred             hhccccCccCCCC--c-ccccccCCEeeccCcc-cCCC--Ccc-----cccccccccccccc-ccccc--cc-cchhccc
Confidence            9999998776422  2 2357899999998776 3321  112     35678889988875 44331  11 2457899


Q ss_pred             ceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHH
Q 015585          295 IDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEI  374 (404)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~  374 (404)
                      +.|++++|. +++.  ..+.       .+++|++|++++| .++..  ..+.  .+++|++|++++|.+++..     .+
T Consensus       310 ~~L~ls~n~-l~~l--~~l~-------~l~~L~~L~L~~n-~l~~l--~~l~--~l~~L~~L~l~~N~l~~l~-----~l  369 (384)
T d2omza2         310 TYLTLYFNN-ISDI--SPVS-------SLTKLQRLFFANN-KVSDV--SSLA--NLTNINWLSAGHNQISDLT-----PL  369 (384)
T ss_dssp             SEEECCSSC-CSCC--GGGG-------GCTTCCEEECCSS-CCCCC--GGGG--GCTTCCEEECCSSCCCBCG-----GG
T ss_pred             CeEECCCCC-CCCC--cccc-------cCCCCCEEECCCC-CCCCC--hhHc--CCCCCCEEECCCCcCCCCh-----hh
Confidence            999999884 6542  1233       5889999999996 66642  2344  4889999999999987541     23


Q ss_pred             HhcCCccE-EEeccc
Q 015585          375 HNERPWLT-FCLDGC  388 (404)
Q Consensus       375 ~~~~~~l~-l~~~~~  388 (404)
                       ..+++++ +++++|
T Consensus       370 -~~l~~L~~L~L~~N  383 (384)
T d2omza2         370 -ANLTRITQLGLNDQ  383 (384)
T ss_dssp             -TTCTTCSEEECCCE
T ss_pred             -ccCCCCCEeeCCCC
Confidence             5678887 888776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=4.6e-13  Score=120.88  Aligned_cols=293  Identities=22%  Similarity=0.258  Sum_probs=188.0

Q ss_pred             cccccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCC
Q 015585           10 TSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH   89 (404)
Q Consensus        10 ~~~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   89 (404)
                      +..+..+++|++|+++++.+++..  .+ ..+++|++|++++|..         .  .+..++.+++|+.|+++++....
T Consensus        59 l~gl~~L~nL~~L~Ls~N~l~~l~--~l-~~L~~L~~L~L~~n~i---------~--~i~~l~~l~~L~~L~~~~~~~~~  124 (384)
T d2omza2          59 IDGVEYLNNLTQINFSNNQLTDIT--PL-KNLTKLVDILMNNNQI---------A--DITPLANLTNLTGLTLFNNQITD  124 (384)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCG--GG-TTCTTCCEEECCSSCC---------C--CCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccCCCCCEEeCcCCcCCCCc--cc-cCCccccccccccccc---------c--ccccccccccccccccccccccc
Confidence            456788999999999998887643  24 4599999999999743         2  23457889999999997754221


Q ss_pred             CCCccc----------------cChh----------------hHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCC
Q 015585           90 QGTFKR----------------VNDM----------------GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSL  137 (404)
Q Consensus        90 ~~~~~~----------------~~~~----------------~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  137 (404)
                      ......                ....                .... ....+.........+....    ......++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~  199 (384)
T d2omza2         125 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSD----ISVLAKLTNL  199 (384)
T ss_dssp             CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSCCCC----CGGGGGCTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhh-hcccccccccccccccccc----cccccccccc
Confidence            100000                0000                0000 0001111111111111110    1124567899


Q ss_pred             cEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEE
Q 015585          138 KKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALN  217 (404)
Q Consensus       138 ~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  217 (404)
                      +.++++++. ++..  .. ...+++|+.|+++++. +.+  +..+..+++|+.|++.++ .+..  +..+..+++|++|+
T Consensus       200 ~~l~l~~n~-i~~~--~~-~~~~~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~l~~n-~l~~--~~~~~~~~~L~~L~  269 (384)
T d2omza2         200 ESLIATNNQ-ISDI--TP-LGILTNLDELSLNGNQ-LKD--IGTLASLTNLTDLDLANN-QISN--LAPLSGLTKLTELK  269 (384)
T ss_dssp             SEEECCSSC-CCCC--GG-GGGCTTCCEEECCSSC-CCC--CGGGGGCTTCSEEECCSS-CCCC--CGGGTTCTTCSEEE
T ss_pred             ceeeccCCc-cCCC--Cc-ccccCCCCEEECCCCC-CCC--cchhhcccccchhccccC-ccCC--CCcccccccCCEee
Confidence            999999875 2221  11 2357899999999875 332  335668899999999985 4543  33467889999999


Q ss_pred             ccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceE
Q 015585          218 LTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDL  297 (404)
Q Consensus       218 l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L  297 (404)
                      ++++.++..  .. ...++.++.+.+..+. +...  ..+     ..++.++.|+++++ .+++..  . ...+++|++|
T Consensus       270 l~~~~l~~~--~~-~~~~~~l~~l~~~~n~-l~~~--~~~-----~~~~~l~~L~ls~n-~l~~l~--~-l~~l~~L~~L  334 (384)
T d2omza2         270 LGANQISNI--SP-LAGLTALTNLELNENQ-LEDI--SPI-----SNLKNLTYLTLYFN-NISDIS--P-VSSLTKLQRL  334 (384)
T ss_dssp             CCSSCCCCC--GG-GTTCTTCSEEECCSSC-CSCC--GGG-----GGCTTCSEEECCSS-CCSCCG--G-GGGCTTCCEE
T ss_pred             ccCcccCCC--Cc-cccccccccccccccc-cccc--ccc-----chhcccCeEECCCC-CCCCCc--c-cccCCCCCEE
Confidence            999877642  11 2357889999998776 4332  122     36789999999986 665421  1 3468999999


Q ss_pred             eecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCc
Q 015585          298 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT  361 (404)
Q Consensus       298 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~  361 (404)
                      ++++|. +++.  ..+.       .+++|+.|++++| .++...  .+.  .+++|++|++++|
T Consensus       335 ~L~~n~-l~~l--~~l~-------~l~~L~~L~l~~N-~l~~l~--~l~--~l~~L~~L~L~~N  383 (384)
T d2omza2         335 FFANNK-VSDV--SSLA-------NLTNINWLSAGHN-QISDLT--PLA--NLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSC-CCCC--GGGG-------GCTTCCEEECCSS-CCCBCG--GGT--TCTTCSEEECCCE
T ss_pred             ECCCCC-CCCC--hhHc-------CCCCCCEEECCCC-cCCCCh--hhc--cCCCCCEeeCCCC
Confidence            999995 6642  2344       5999999999985 676432  243  5899999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=3.2e-12  Score=111.46  Aligned_cols=59  Identities=19%  Similarity=0.082  Sum_probs=27.6

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC   85 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   85 (404)
                      +++++|+|+++.++......+ ..+++|++|++++|.         +.......+..+++|+.|+++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f-~~l~~L~~L~l~~n~---------~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNK---------ISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHh-hcccccccccccccc---------ccccchhhhhCCCccCEecccCC
Confidence            456666666555543211112 235566666666542         22222223445556666666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=3.3e-11  Score=100.02  Aligned_cols=204  Identities=19%  Similarity=0.259  Sum_probs=123.5

Q ss_pred             EEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhh
Q 015585           21 SLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMG  100 (404)
Q Consensus        21 ~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  100 (404)
                      .+++..+.+++..  ... .+.+|++|++.+|.         +++  ++.+..+++|+.|+++++..      ..+.+  
T Consensus        23 ~~~l~~~~~~d~~--~~~-~l~~L~~L~l~~~~---------i~~--l~~l~~l~~L~~L~ls~n~i------~~~~~--   80 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQA-DLDGITTLSAFGTG---------VTT--IEGVQYLNNLIGLELKDNQI------TDLAP--   80 (227)
T ss_dssp             HHHTTCSSTTSEE--CHH-HHHTCCEEECTTSC---------CCC--CTTGGGCTTCCEEECCSSCC------CCCGG--
T ss_pred             HHHhCCCCcCCcC--CHH-HcCCcCEEECCCCC---------CCc--chhHhcCCCCcEeecCCcee------ecccc--
Confidence            3455545554432  122 25678888888762         332  34467788888888877531      11211  


Q ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHH
Q 015585          101 MFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVK  180 (404)
Q Consensus       101 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  180 (404)
                          ...+++|+.++++++. ++.  +.. +..+++|+.++++++.......    ....+.++.+.+.++....   ..
T Consensus        81 ----l~~l~~l~~l~~~~n~-~~~--i~~-l~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~  145 (227)
T d1h6ua2          81 ----LKNLTKITELELSGNP-LKN--VSA-IAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITN---IS  145 (227)
T ss_dssp             ----GTTCCSCCEEECCSCC-CSC--CGG-GTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCC---CG
T ss_pred             ----cccccccccccccccc-ccc--ccc-ccccccccccccccccccccch----hccccchhhhhchhhhhch---hh
Confidence                2567788888887752 322  112 3456888888888775332221    2356778888887754322   12


Q ss_pred             HhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhh
Q 015585          181 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCV  260 (404)
Q Consensus       181 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  260 (404)
                      .+..+++|+.|++.++ .+.+  ...+..+++|+.|++++|.+++.  .. ...+++|++|++++|. +++..  .+   
T Consensus       146 ~~~~~~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~Ls~n~l~~l--~~-l~~l~~L~~L~Ls~N~-lt~i~--~l---  213 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNA-QVSD--LTPLANLSKLTTLKADDNKISDI--SP-LASLPNLIEVHLKNNQ-ISDVS--PL---  213 (227)
T ss_dssp             GGGGCTTCCEEECCSS-CCCC--CGGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECTTSC-CCBCG--GG---
T ss_pred             hhcccccccccccccc-cccc--chhhcccccceecccCCCccCCC--hh-hcCCCCCCEEECcCCc-CCCCc--cc---
Confidence            3456788888888775 3332  23366788888888888877652  22 2357888899988885 65432  22   


Q ss_pred             cCCCCCCccEEecCC
Q 015585          261 GGTISQSLTTLDLGY  275 (404)
Q Consensus       261 ~~~~~~~L~~L~l~~  275 (404)
                        ..+++|+.|++++
T Consensus       214 --~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 --ANTSNLFIVTLTN  226 (227)
T ss_dssp             --TTCTTCCEEEEEE
T ss_pred             --ccCCCCCEEEeeC
Confidence              3678888888753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.7e-11  Score=104.32  Aligned_cols=133  Identities=17%  Similarity=0.060  Sum_probs=63.9

Q ss_pred             HhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCC
Q 015585          132 LSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLR  211 (404)
Q Consensus       132 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  211 (404)
                      ..+++|+.|+++++......  .......++|+.++++++. +.......++.+++|++|+++++ .+......++..++
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~  177 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH  177 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred             cccccCCEEecCCccccccc--ccccchhcccchhhhcccc-ccccChhHhccccchhhcccccC-cccccchhhhcccc
Confidence            34456666666555311000  0112244556666665543 22211122345566666666663 44433334445566


Q ss_pred             CCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCC
Q 015585          212 KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGY  275 (404)
Q Consensus       212 ~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~  275 (404)
                      +|+.+++.+|.++...... ...+++|++|+++++. +.......+     ..+++|++|++++
T Consensus       178 ~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~-i~~~~~~~~-----~~~~~L~~L~l~~  234 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANN-LSALPTEAL-----APLRALQYLRLND  234 (284)
T ss_dssp             TCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC-CSCCCHHHH-----TTCTTCCEEECCS
T ss_pred             ccchhhhhhccccccChhH-hhhhhhcccccccccc-ccccccccc-----ccccccCEEEecC
Confidence            6666666666554322111 2245666666666655 333222222     2456667777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.5e-12  Score=110.91  Aligned_cols=208  Identities=16%  Similarity=0.092  Sum_probs=118.5

Q ss_pred             CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCC
Q 015585          135 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT  214 (404)
Q Consensus       135 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  214 (404)
                      +++++|+++++. ++.-.- ..+..++.|+.|+++++. +..........+..++.+.+.....+.......++.+++|+
T Consensus        32 ~~~~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHGNR-ISHVPA-ASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEECcCCc-CCCCCH-HHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhhcccccCC
Confidence            467888888875 332111 123466788888887754 33222223345677777776654555554455567778888


Q ss_pred             EEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCC
Q 015585          215 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI  294 (404)
Q Consensus       215 ~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L  294 (404)
                      +|+++.+.+...... .....++|+.+++.++. ++......+     ..+++|++|+++++ .++...... ...+++|
T Consensus       109 ~L~l~~n~~~~~~~~-~~~~~~~L~~l~l~~N~-l~~i~~~~f-----~~~~~L~~L~l~~N-~l~~l~~~~-f~~l~~L  179 (284)
T d1ozna_         109 TLHLDRCGLQELGPG-LFRGLAALQYLYLQDNA-LQALPDDTF-----RDLGNLTHLFLHGN-RISSVPERA-FRGLHSL  179 (284)
T ss_dssp             EEECTTSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCEECTTT-TTTCTTC
T ss_pred             EEecCCccccccccc-ccchhcccchhhhcccc-ccccChhHh-----ccccchhhcccccC-cccccchhh-hcccccc
Confidence            888888765432211 12245678888887765 332211111     34567788887775 443211111 1245777


Q ss_pred             ceEeecCCCCCCHHHHHHHHhhCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585          295 IDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                      +.+.+.+|. ++...-..+.       ++++|+.|+++++ .++......+.  .+++|+.|++++|+++-
T Consensus       180 ~~l~l~~N~-l~~i~~~~f~-------~l~~L~~L~l~~N-~i~~~~~~~~~--~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         180 DRLLLHQNR-VAHVHPHAFR-------DLGRLMTLYLFAN-NLSALPTEALA--PLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CEEECCSSC-CCEECTTTTT-------TCTTCCEEECCSS-CCSCCCHHHHT--TCTTCCEEECCSSCEEC
T ss_pred             chhhhhhcc-ccccChhHhh-------hhhhccccccccc-ccccccccccc--cccccCEEEecCCCCCC
Confidence            777777764 4322112222       4677777777773 55544444443  36777777777777653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.3e-12  Score=107.68  Aligned_cols=58  Identities=17%  Similarity=0.178  Sum_probs=26.9

Q ss_pred             CccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585          162 ALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI  223 (404)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  223 (404)
                      +++.|+++++. +.......+..+++|++|+++++ .++.  +..++.+++|+.|++++|.+
T Consensus        32 ~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N-~l~~--l~~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          32 DTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTK--LQVDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             TCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCE--EECCSCCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCc-CCCcCHHHhhccccccccccccc-cccc--cccccccccccccccccccc
Confidence            45566665543 32212223345555566655553 3332  22233455555555555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=5.7e-10  Score=90.28  Aligned_cols=161  Identities=14%  Similarity=0.200  Sum_probs=100.8

Q ss_pred             CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585           41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS  120 (404)
Q Consensus        41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~  120 (404)
                      ++++++|++.++.         +++  +..+..+++|++|+++++.      +..+.+      ...+++|+.|+++++.
T Consensus        39 l~~l~~L~l~~~~---------i~~--l~~l~~l~nL~~L~Ls~N~------l~~~~~------l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          39 LDQVTTLQADRLG---------IKS--IDGVEYLNNLTQINFSNNQ------LTDITP------LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HTTCCEEECTTSC---------CCC--CTTGGGCTTCCEEECCSSC------CCCCGG------GTTCTTCCEEECCSSC
T ss_pred             hcCCCEEECCCCC---------CCC--ccccccCCCcCcCcccccc------ccCccc------ccCCcccccccccccc
Confidence            5678888888753         222  2345677788888887753      111211      2467788888887753


Q ss_pred             CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCC
Q 015585          121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIA  200 (404)
Q Consensus       121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  200 (404)
                      .....+    +..+++|+.|+++++.......    ...+++|+.|+++++. +..  +..+..+++|++|++.++ .++
T Consensus        96 ~~~~~~----l~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~-l~~--~~~l~~~~~L~~L~l~~n-~l~  163 (199)
T d2omxa2          96 IADITP----LANLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNT-ISD--ISALSGLTSLQQLNFSSN-QVT  163 (199)
T ss_dssp             CCCCGG----GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSC-CCC--CGGGTTCTTCSEEECCSS-CCC
T ss_pred             cccccc----cccccccccccccccccccccc----cchhhhhHHhhhhhhh-hcc--cccccccccccccccccc-ccc
Confidence            322221    4566888888888775433222    3467888888888764 322  334667888888888874 444


Q ss_pred             hHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEE
Q 015585          201 DTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNL  241 (404)
Q Consensus       201 ~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L  241 (404)
                      +  +..+..+++|++|++++|++++-  ..+ ..+++|++|
T Consensus       164 ~--l~~l~~l~~L~~L~ls~N~i~~i--~~l-~~L~~L~~L  199 (199)
T d2omxa2         164 D--LKPLANLTTLERLDISSNKVSDI--SVL-AKLTNLESL  199 (199)
T ss_dssp             C--CGGGTTCTTCCEEECCSSCCCCC--GGG-GGCTTCSEE
T ss_pred             C--CccccCCCCCCEEECCCCCCCCC--ccc-cCCCCCCcC
Confidence            3  34467788888888888877752  222 246777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.02  E-value=5e-10  Score=90.64  Aligned_cols=162  Identities=20%  Similarity=0.254  Sum_probs=94.3

Q ss_pred             CCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHH
Q 015585           73 SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLA  152 (404)
Q Consensus        73 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  152 (404)
                      .++++++|+++++.      +..+..  +    ..+++|+.|+++++ .+++.  .. +..+++|+.|+++++.......
T Consensus        38 ~l~~l~~L~l~~~~------i~~l~~--l----~~l~nL~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~  101 (199)
T d2omxa2          38 DLDQVTTLQADRLG------IKSIDG--V----EYLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNNQIADITP  101 (199)
T ss_dssp             HHTTCCEEECTTSC------CCCCTT--G----GGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             HhcCCCEEECCCCC------CCCccc--c----ccCCCcCcCccccc-cccCc--cc-ccCCcccccccccccccccccc
Confidence            45677777777653      122211  1    45677888888775 44332  11 4566778888887775322221


Q ss_pred             HHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHH
Q 015585          153 FHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA  232 (404)
Q Consensus       153 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~  232 (404)
                          ...++.|+.|+++++....   +..+..+++|+.|+++++ .+..  +..+..+++|+.|++.+|.+++-  .. .
T Consensus       102 ----l~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~n-~l~~--~~~l~~~~~L~~L~l~~n~l~~l--~~-l  168 (199)
T d2omxa2         102 ----LANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN-TISD--ISALSGLTSLQQLNFSSNQVTDL--KP-L  168 (199)
T ss_dssp             ----GTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSS-CCCC--CGGGTTCTTCSEEECCSSCCCCC--GG-G
T ss_pred             ----ccccccccccccccccccc---ccccchhhhhHHhhhhhh-hhcc--cccccccccccccccccccccCC--cc-c
Confidence                3466777888777765332   223456777888887774 3432  33456677788888877766542  12 2


Q ss_pred             hcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEE
Q 015585          233 QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTL  271 (404)
Q Consensus       233 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L  271 (404)
                      ..+++|++|++++|. +++.  ..+.     .+++|++|
T Consensus       169 ~~l~~L~~L~ls~N~-i~~i--~~l~-----~L~~L~~L  199 (199)
T d2omxa2         169 ANLTTLERLDISSNK-VSDI--SVLA-----KLTNLESL  199 (199)
T ss_dssp             TTCTTCCEEECCSSC-CCCC--GGGG-----GCTTCSEE
T ss_pred             cCCCCCCEEECCCCC-CCCC--cccc-----CCCCCCcC
Confidence            356778888887775 5542  2222     45566654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=1.6e-09  Score=89.54  Aligned_cols=191  Identities=17%  Similarity=0.185  Sum_probs=136.0

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      ....+.+|++|++.++.+++  +..+ ..+++|++|++++|.         ++  .+..+..+++|+.++++++..    
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~~l-~~l~~L~~L~ls~n~---------i~--~~~~l~~l~~l~~l~~~~n~~----   97 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT--IEGV-QYLNNLIGLELKDNQ---------IT--DLAPLKNLTKITELELSGNPL----   97 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSSC---------CC--CCGGGTTCCSCCEEECCSCCC----
T ss_pred             CHHHcCCcCEEECCCCCCCc--chhH-hcCCCCcEeecCCce---------ee--ccccccccccccccccccccc----
Confidence            35667899999999988874  2444 459999999999973         32  233478899999999987631    


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC  171 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  171 (404)
                        ..+..      ...+++|+.+.++++.......    ....+.++.+.+..+.......    ...+++|+.|.+.++
T Consensus        98 --~~i~~------l~~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n  161 (227)
T d1h6ua2          98 --KNVSA------IAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNA  161 (227)
T ss_dssp             --SCCGG------GTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSS
T ss_pred             --ccccc------ccccccccccccccccccccch----hccccchhhhhchhhhhchhhh----hcccccccccccccc
Confidence              22221      1468899999998864433222    3345888999998875322222    236789999999987


Q ss_pred             CCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecC
Q 015585          172 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRG  245 (404)
Q Consensus       172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~  245 (404)
                      ....   ...+.++++|++|+++++ .+.+  +..++.+++|++|++++|++++-.  . ...+++|+.|++++
T Consensus       162 ~~~~---~~~l~~l~~L~~L~Ls~n-~l~~--l~~l~~l~~L~~L~Ls~N~lt~i~--~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         162 QVSD---LTPLANLSKLTTLKADDN-KISD--ISPLASLPNLIEVHLKNNQISDVS--P-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCC---CGGGTTCTTCCEEECCSS-CCCC--CGGGGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCEEEEEE
T ss_pred             cccc---chhhcccccceecccCCC-ccCC--ChhhcCCCCCCEEECcCCcCCCCc--c-cccCCCCCEEEeeC
Confidence            5322   224678999999999985 5654  445788999999999999887532  2 34689999999863

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=1.9e-10  Score=100.01  Aligned_cols=204  Identities=19%  Similarity=0.151  Sum_probs=115.3

Q ss_pred             cccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCC
Q 015585           12 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG   91 (404)
Q Consensus        12 ~~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   91 (404)
                      .+..+++|++|+++++.+.......+ ..+++|++|++++|...      .+.      -...+.++.|++.++.     
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~~~~f-~~l~~L~~L~l~~n~l~------~l~------~~~~~~l~~L~~~~n~-----  111 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLK------ELP------EKMPKTLQELRVHENE-----  111 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCS------BCC------SSCCTTCCEEECCSSC-----
T ss_pred             Hhhccccccccccccccccccchhhh-hCCCccCEecccCCccC------cCc------cchhhhhhhhhccccc-----
Confidence            57889999999999877764433333 35899999999997321      111      1234577888876632     


Q ss_pred             CccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585           92 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC  171 (404)
Q Consensus        92 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  171 (404)
                       +..+....    ......+..+....+...........+..+++|+.+++.++.. ....    ...+++|+.|++.++
T Consensus       112 -l~~l~~~~----~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~----~~~~~~L~~L~l~~n  181 (305)
T d1xkua_         112 -ITKVRKSV----FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIP----QGLPPSLTELHLDGN  181 (305)
T ss_dssp             -CCBBCHHH----HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCC----SSCCTTCSEEECTTS
T ss_pred             -hhhhhhhh----hhccccccccccccccccccCCCccccccccccCccccccCCc-cccC----cccCCccCEEECCCC
Confidence             22233222    2345667777776532221111122245567788888877642 1100    113467777777765


Q ss_pred             CCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          172 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       172 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                      .. .......+..++.+++|+++++ .+.......+..+++|++|++++|.++.-  ..-...+++|++|+++++.
T Consensus       182 ~~-~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~L~~l--p~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         182 KI-TKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             CC-CEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSC--CTTTTTCSSCCEEECCSSC
T ss_pred             cC-CCCChhHhhccccccccccccc-cccccccccccccccceeeeccccccccc--ccccccccCCCEEECCCCc
Confidence            42 2222234456677777777763 55544444556667777777777655421  1111235666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.8e-11  Score=100.63  Aligned_cols=201  Identities=16%  Similarity=0.064  Sum_probs=100.8

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      ......+.+++.+++.++. .+..+   -+++++|+|++|         .++......+..+++|++|+++++.      
T Consensus         6 ~~~~~~~~~v~C~~~~L~~-iP~~l---p~~l~~L~Ls~N---------~i~~l~~~~f~~l~~L~~L~L~~N~------   66 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSEN---------LLYTFSLATLMPYTRLTQLNLDRAE------   66 (266)
T ss_dssp             EECSTTCCEEECTTSCCSS-CCSCC---CTTCCEEECTTS---------CCSEEEGGGGTTCTTCCEEECTTSC------
T ss_pred             EcccCCCeEEEccCCCCCe-eCcCc---CcCCCEEECcCC---------cCCCcCHHHhhcccccccccccccc------
Confidence            3444555666776666552 12111   147888888886         3443333456778888888887753      


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR  172 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  172 (404)
                      +..+...      ..+++|+.|+++++ .++..  ...+..+++|+.|+++++......  ......++.++.|.+.++.
T Consensus        67 l~~l~~~------~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_          67 LTKLQVD------GTLPVLGTLDLSHN-QLQSL--PLLGQTLPALTVLDVSFNRLTSLP--LGALRGLGELQELYLKGNE  135 (266)
T ss_dssp             CCEEECC------SCCTTCCEEECCSS-CCSSC--CCCTTTCTTCCEEECCSSCCCCCC--SSTTTTCTTCCEEECTTSC
T ss_pred             ccccccc------cccccccccccccc-ccccc--ccccccccccccccccccccceee--ccccccccccccccccccc
Confidence            1122111      34677788887774 33211  112345567777777666321100  0112244566666666543


Q ss_pred             CCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCC
Q 015585          173 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK  247 (404)
Q Consensus       173 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  247 (404)
                       +.......+..++.|+.++++++ .+.......+..+++|++|++++|+++.- ...+. ..++|+.|.+++++
T Consensus       136 -l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l-p~~~~-~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         136 -LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFF-GSHLLPFAFLHGNP  206 (266)
T ss_dssp             -CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTT-TTCCCSEEECCSCC
T ss_pred             -cceeccccccccccchhcccccc-cccccCccccccccccceeecccCCCccc-ChhHC-CCCCCCEEEecCCC
Confidence             22111112234566666666663 44443334445566666666666654421 00011 24455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.97  E-value=3.9e-09  Score=82.47  Aligned_cols=132  Identities=17%  Similarity=0.165  Sum_probs=98.0

Q ss_pred             HHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCC
Q 015585          226 SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSC  302 (404)
Q Consensus       226 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~  302 (404)
                      ..+..+....++|++|+++++..++++++..++... ...+.|++|+++++ .+++.+...++   ...+.|++|++++|
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L-~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHH-hhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh
Confidence            346666667899999999887668888776654211 34578999999986 78887655443   34688999999999


Q ss_pred             CCCCHHHHHHHHhhCCCcccCCCCcEEeccCC--CCCCHHHHHhhh--cCCCCcccEEecCCccc
Q 015585          303 FYVTDASVEALARKQPDQEKSKQLRRLDLCNC--IGLSVDSLRWVK--RPSFRGLHWLGIGQTRL  363 (404)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~--~~i~~~~~~~l~--~~~~~~L~~L~l~~~~l  363 (404)
                       .+++.++..++..+.   .+++|+.|++.++  ..++..+...+.  ....++|+.|+++.+..
T Consensus        83 -~i~~~g~~~l~~aL~---~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          83 -FLTPELLARLLRSTL---VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             -BCCHHHHHHHHHHTT---TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             -hcchHHHHHHHHHHH---hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence             499999999998888   7899999999874  245565554443  12478999999887653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.95  E-value=1.4e-09  Score=88.62  Aligned_cols=164  Identities=22%  Similarity=0.202  Sum_probs=103.8

Q ss_pred             CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585           41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS  120 (404)
Q Consensus        41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~  120 (404)
                      +.+|++|++.+|.         ++.  +..+..+++|++|+++++.      +..+..      ...+++|+.|+++++ 
T Consensus        45 L~~L~~L~l~~~~---------i~~--l~~l~~l~~L~~L~L~~n~------i~~l~~------~~~l~~L~~L~l~~n-  100 (210)
T d1h6ta2          45 LNSIDQIIANNSD---------IKS--VQGIQYLPNVTKLFLNGNK------LTDIKP------LANLKNLGWLFLDEN-  100 (210)
T ss_dssp             HHTCCEEECTTSC---------CCC--CTTGGGCTTCCEEECCSSC------CCCCGG------GTTCTTCCEEECCSS-
T ss_pred             hcCccEEECcCCC---------CCC--chhHhhCCCCCEEeCCCcc------ccCccc------cccCccccccccccc-
Confidence            4477888888763         221  2335677888888887753      122221      145778888888874 


Q ss_pred             CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCC
Q 015585          121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIA  200 (404)
Q Consensus       121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  200 (404)
                      .+++  +.. +..+++|+.|++.++.......    ...++.++.+.++++. +.+  ......+++|++++++++ .+.
T Consensus       101 ~i~~--l~~-l~~l~~L~~L~l~~~~~~~~~~----l~~l~~l~~l~~~~n~-l~~--~~~~~~l~~L~~l~l~~n-~l~  169 (210)
T d1h6ta2         101 KVKD--LSS-LKDLKKLKSLSLEHNGISDING----LVHLPQLESLYLGNNK-ITD--ITVLSRLTKLDTLSLEDN-QIS  169 (210)
T ss_dssp             CCCC--GGG-GTTCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCC--CGGGGGCTTCSEEECCSS-CCC
T ss_pred             cccc--ccc-cccccccccccccccccccccc----cccccccccccccccc-ccc--cccccccccccccccccc-ccc
Confidence            4443  222 4556888888888775322221    3366788888887764 332  223556788888888874 454


Q ss_pred             hHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeec
Q 015585          201 DTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLR  244 (404)
Q Consensus       201 ~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~  244 (404)
                      +  +..++.+++|+.|++++|.+++-  ..+ ..+++|++|+++
T Consensus       170 ~--i~~l~~l~~L~~L~Ls~N~i~~l--~~l-~~l~~L~~L~Ls  208 (210)
T d1h6ta2         170 D--IVPLAGLTKLQNLYLSKNHISDL--RAL-AGLKNLDVLELF  208 (210)
T ss_dssp             C--CGGGTTCTTCCEEECCSSCCCBC--GGG-TTCTTCSEEEEE
T ss_pred             c--cccccCCCCCCEEECCCCCCCCC--hhh-cCCCCCCEEEcc
Confidence            3  34467788888888888877652  222 357888888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=3.7e-09  Score=86.11  Aligned_cols=164  Identities=23%  Similarity=0.241  Sum_probs=101.2

Q ss_pred             CCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHH
Q 015585           74 CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAF  153 (404)
Q Consensus        74 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l  153 (404)
                      +.+|+.|+++++..      ..+.  +    ...+++|++|+++++ .+++.  .. +..+++|+.|+++++. ++.  +
T Consensus        45 L~~L~~L~l~~~~i------~~l~--~----l~~l~~L~~L~L~~n-~i~~l--~~-~~~l~~L~~L~l~~n~-i~~--l  105 (210)
T d1h6ta2          45 LNSIDQIIANNSDI------KSVQ--G----IQYLPNVTKLFLNGN-KLTDI--KP-LANLKNLGWLFLDENK-VKD--L  105 (210)
T ss_dssp             HHTCCEEECTTSCC------CCCT--T----GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSC-CCC--G
T ss_pred             hcCccEEECcCCCC------CCch--h----HhhCCCCCEEeCCCc-cccCc--cc-cccCcccccccccccc-ccc--c
Confidence            45677888877531      1221  1    146788888888875 44432  12 3457788888888775 332  2


Q ss_pred             HHHHcCCCCccEEEccCCCCCCHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHh
Q 015585          154 HDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQ  233 (404)
Q Consensus       154 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~  233 (404)
                      .. ...+++|+.|++.++....   +..+..++.++.+.+.++ .+.+  ...+..+++|+.++++++.+++.  .. ..
T Consensus       106 ~~-l~~l~~L~~L~l~~~~~~~---~~~l~~l~~l~~l~~~~n-~l~~--~~~~~~l~~L~~l~l~~n~l~~i--~~-l~  175 (210)
T d1h6ta2         106 SS-LKDLKKLKSLSLEHNGISD---INGLVHLPQLESLYLGNN-KITD--ITVLSRLTKLDTLSLEDNQISDI--VP-LA  175 (210)
T ss_dssp             GG-GTTCTTCCEEECTTSCCCC---CGGGGGCTTCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSSCCCCC--GG-GT
T ss_pred             cc-ccccccccccccccccccc---cccccccccccccccccc-cccc--ccccccccccccccccccccccc--cc-cc
Confidence            22 3457788888887765322   234567778888888774 4443  23345678888888888876642  22 23


Q ss_pred             cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecC
Q 015585          234 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLG  274 (404)
Q Consensus       234 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~  274 (404)
                      .+++|++|++++|. +++.  ..+     ..+++|++|+++
T Consensus       176 ~l~~L~~L~Ls~N~-i~~l--~~l-----~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKNH-ISDL--RAL-----AGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSSC-CCBC--GGG-----TTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCCC-CCCC--hhh-----cCCCCCCEEEcc
Confidence            57788888888775 5542  223     357788888875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.88  E-value=2.1e-08  Score=78.18  Aligned_cols=119  Identities=12%  Similarity=0.132  Sum_probs=72.6

Q ss_pred             CCCCCCEEEccCC-ccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHH
Q 015585          209 CLRKLTALNLTGA-DITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGI  284 (404)
Q Consensus       209 ~~~~L~~L~l~~~-~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~  284 (404)
                      ..++|++|+++++ .++++++..++.   ..++|++|++++|. +++.+...++.. -...+.|++|+++++ .+++.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~-L~~n~~L~~L~L~~n-~i~~~g~   89 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIEL-IETSPSLRVLNVESN-FLTPELL   89 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHH-HHHCSSCCEEECCSS-BCCHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhh-hhhcccccceeeehh-hcchHHH
Confidence            4567777777753 577766665554   34567777777765 666554433210 023456777777775 6777776


Q ss_pred             HHHHHhC---CCCceEeecCCC--CCCHHHHHHHHhhCCCcccCCCCcEEeccC
Q 015585          285 LTIAAAG---IGIIDLCVRSCF--YVTDASVEALARKQPDQEKSKQLRRLDLCN  333 (404)
Q Consensus       285 ~~l~~~~---~~L~~L~l~~~~--~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~  333 (404)
                      ..+++.+   +.|++|+++++.  .+++.+...++..+.   .+++|+.|+++.
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~---~n~sL~~l~l~~  140 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE---ENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH---HCSSCCEEECCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHH---hCCCccEeeCcC
Confidence            6665443   557777776552  355666555555444   567777777755

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.88  E-value=5.4e-13  Score=116.94  Aligned_cols=63  Identities=19%  Similarity=0.134  Sum_probs=31.1

Q ss_pred             CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCCChHHHHHHHhcCCccE-EEecccccccc
Q 015585          323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH  393 (404)
Q Consensus       323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~l~-l~~~~~~~~~~  393 (404)
                      +++|+.|+++++ +++......+.  .+++|++|++++|.+++.-.    .+ ..+..++ +++.+|.+=|.
T Consensus       243 ~~~L~~L~Ls~N-~l~g~iP~~l~--~L~~L~~L~Ls~N~l~g~iP----~~-~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         243 SKNLNGLDLRNN-RIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIP----QG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CTTCCEEECCSS-CCEECCCGGGG--GCTTCCEEECCSSEEEEECC----CS-TTGGGSCGGGTCSSSEEES
T ss_pred             ccccccccCccC-eecccCChHHh--CCCCCCEEECcCCcccccCC----Cc-ccCCCCCHHHhCCCccccC
Confidence            566666666663 44422222333  35667777777666652101    01 2334454 55555554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.87  E-value=5.2e-11  Score=104.01  Aligned_cols=59  Identities=17%  Similarity=0.190  Sum_probs=27.8

Q ss_pred             CCcEEeccCCCCChH--HHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEeccc
Q 015585           18 NLRSLSLVLDVITDE--LLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC   85 (404)
Q Consensus        18 ~L~~L~L~~~~~~~~--~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~   85 (404)
                      ++++|+|+++.+...  .+..+. .+++|++|+++++.        .++......++++++|++|+++++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N--------~l~g~iP~~i~~L~~L~~L~Ls~N  111 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGIN--------NLVGPIPPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEET--------TEESCCCGGGGGCTTCSEEEEEEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCcccccccccccc--------ccccccccccccccccchhhhccc
Confidence            456666665444321  122232 36666666665421        122222234555666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.80  E-value=2.1e-08  Score=78.25  Aligned_cols=132  Identities=13%  Similarity=0.063  Sum_probs=101.2

Q ss_pred             HHHHHHHhcCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHH---HhCCCCceEeecCC
Q 015585          226 SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSC  302 (404)
Q Consensus       226 ~~l~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~  302 (404)
                      ..+..+....++|++|+++++..+++.++..++... ...++|++|+++++ .+++.++..++   ...+.++.+++++|
T Consensus         7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al-~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_           7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHH-hcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc
Confidence            345666667899999999987678888877666321 25678999999997 88887766654   34689999999998


Q ss_pred             CCCCHHHHHHHHhhCCCcccCCCCcEEeccCC-CCCCHHHHHhhh--cCCCCcccEEecCCccc
Q 015585          303 FYVTDASVEALARKQPDQEKSKQLRRLDLCNC-IGLSVDSLRWVK--RPSFRGLHWLGIGQTRL  363 (404)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~-~~i~~~~~~~l~--~~~~~~L~~L~l~~~~l  363 (404)
                      . +++.++..++..+.   .+++|+.+++..+ +.+++.+...++  ...+++|+.|+++.+..
T Consensus        85 ~-~~~~g~~~l~~~l~---~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          85 F-ISGSGILALVEALQ---SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             C-CCHHHHHHHHHGGG---GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             c-ccchhHHHHHHHHH---hCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            5 99999999998777   7899998887654 478887776664  12488999999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.80  E-value=8.3e-08  Score=74.68  Aligned_cols=121  Identities=19%  Similarity=0.200  Sum_probs=88.1

Q ss_pred             hCCCCCCEEEccC-CccCHHHHHHHHh---cCCCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHH
Q 015585          208 SCLRKLTALNLTG-ADITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDG  283 (404)
Q Consensus       208 ~~~~~L~~L~l~~-~~l~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~  283 (404)
                      ...|+|++|++.+ +.+++.++..++.   ..++|++|++++|. +++.+...++... ...+.++.++++++ .+++.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l-~~~~~l~~l~l~~~-~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEML-KVNNTLKSLNVESN-FISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHH-HHCSSCCEEECCSS-CCCHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHH-hhcccchhhhhccc-cccchh
Confidence            3568899999987 4788888877775   56788899998885 7777766554211 24578888888886 778887


Q ss_pred             HHHHHHh---CCCCceEeecCCC-CCCHHHHHHHHhhCCCcccCCCCcEEeccCC
Q 015585          284 ILTIAAA---GIGIIDLCVRSCF-YVTDASVEALARKQPDQEKSKQLRRLDLCNC  334 (404)
Q Consensus       284 ~~~l~~~---~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~  334 (404)
                      +..+.+.   .+.|+.++|..+. .+++.+...++..+.   .+++|+.|++...
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~---~n~~L~~L~l~~~  142 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE---KNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH---HCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHH---hCCCcCEEeCcCC
Confidence            7766644   4778876665332 588888877777665   6888999988763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.4e-09  Score=80.67  Aligned_cols=109  Identities=19%  Similarity=0.203  Sum_probs=66.7

Q ss_pred             ccCCCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCC
Q 015585           13 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT   92 (404)
Q Consensus        13 ~~~~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   92 (404)
                      +....++++|+|+++.++..  +.+...+++|++|++++|.         +..  ++.+..+++|+.|+++++.      
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~---------i~~--l~~~~~l~~L~~L~ls~N~------   74 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNE---------IRK--LDGFPLLRRLKTLLVNNNR------   74 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSC---------CCE--ECCCCCCSSCCEEECCSSC------
T ss_pred             ccCcCcCcEEECCCCCCCcc--CccccccccCCEEECCCCC---------CCc--cCCcccCcchhhhhccccc------
Confidence            55677888899998777643  2344557889999998873         222  2346678888888888753      


Q ss_pred             ccccChhhHHHHHhcCCCCcEEEcCCCCCCCHH-HHHHHHHhCCCCcEEEecCCC
Q 015585           93 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA-GFAAILLSCHSLKKFEVRSAS  146 (404)
Q Consensus        93 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~  146 (404)
                      +..+.+.    +...+++|+.|+++++ .+.+. .+.. +..+++|++|++++++
T Consensus        75 i~~l~~~----~~~~l~~L~~L~L~~N-~i~~~~~l~~-l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          75 ICRIGEG----LDQALPDLTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNP  123 (162)
T ss_dssp             CCEECSC----HHHHCTTCCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSG
T ss_pred             ccCCCcc----ccccccccccceeccc-cccccccccc-cccccccchhhcCCCc
Confidence            2223222    1235677777777774 33321 2222 3456666666666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.58  E-value=1.4e-08  Score=89.62  Aligned_cols=134  Identities=19%  Similarity=0.107  Sum_probs=74.9

Q ss_pred             CCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCcccc
Q 015585           17 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV   96 (404)
Q Consensus        17 ~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   96 (404)
                      .++++|+|+++.++.  ++   ...++|++|++++|...      .++       ....+|+.|+++++.      ...+
T Consensus        38 ~~l~~LdLs~~~L~~--lp---~~~~~L~~L~Ls~N~l~------~lp-------~~~~~L~~L~l~~n~------l~~l   93 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LP---ELPPHLESLVASCNSLT------ELP-------ELPQSLKSLLVDNNN------LKAL   93 (353)
T ss_dssp             HTCSEEECTTSCCSC--CC---SCCTTCSEEECCSSCCS------SCC-------CCCTTCCEEECCSSC------CSCC
T ss_pred             cCCCEEEeCCCCCCC--CC---CCCCCCCEEECCCCCCc------ccc-------cchhhhhhhhhhhcc------cchh
Confidence            468889998777653  11   23578999999886321      111       124678888887753      1222


Q ss_pred             ChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCCCH
Q 015585           97 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS  176 (404)
Q Consensus        97 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~  176 (404)
                      .+        ..+.|++|+++++ .+...  .. ...+++|+.|++.++....      .....+.+..+.+..+.... 
T Consensus        94 ~~--------lp~~L~~L~L~~n-~l~~l--p~-~~~l~~L~~L~l~~~~~~~------~~~~~~~l~~l~~~~~~~~~-  154 (353)
T d1jl5a_          94 SD--------LPPLLEYLGVSNN-QLEKL--PE-LQNSSFLKIIDVDNNSLKK------LPDLPPSLEFIAAGNNQLEE-  154 (353)
T ss_dssp             CS--------CCTTCCEEECCSS-CCSSC--CC-CTTCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSS-
T ss_pred             hh--------hcccccccccccc-ccccc--cc-hhhhccceeeccccccccc------cccccccccchhhccccccc-
Confidence            21        1246888888875 33321  11 2456788888887774211      11133556666665543221 


Q ss_pred             HHHHHhhCCCCCCEEeccC
Q 015585          177 ETVKKLASSRNLEVLDLGG  195 (404)
Q Consensus       177 ~~~~~l~~~~~L~~L~l~~  195 (404)
                        ...+..++.++.+.+..
T Consensus       155 --~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         155 --LPELQNLPFLTAIYADN  171 (353)
T ss_dssp             --CCCCTTCTTCCEEECCS
T ss_pred             --cccccccccceeccccc
Confidence              11233556667776655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2e-08  Score=77.81  Aligned_cols=40  Identities=25%  Similarity=0.285  Sum_probs=20.4

Q ss_pred             CCCCCCEEeccCCCCCCh-HHHHhhhCCCCCCEEEccCCccC
Q 015585          184 SSRNLEVLDLGGCKSIAD-TCLRSISCLRKLTALNLTGADIT  224 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~  224 (404)
                      .+++|++|+++++ .+.+ ..+..++.+++|++|++.+|.++
T Consensus        85 ~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          85 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccccceeccc-cccccccccccccccccchhhcCCCccc
Confidence            3555666666553 3322 23344455566666666665443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=8.7e-10  Score=92.19  Aligned_cols=41  Identities=12%  Similarity=0.148  Sum_probs=20.5

Q ss_pred             CCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccC
Q 015585          184 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT  224 (404)
Q Consensus       184 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~  224 (404)
                      .++.++++.+..++.+.......+..+++|+++++.++.+.
T Consensus        76 ~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhc
Confidence            44555555554444444333344445555666666555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.36  E-value=1.1e-07  Score=83.60  Aligned_cols=271  Identities=15%  Similarity=0.033  Sum_probs=135.4

Q ss_pred             CCCCcEEeccCCCCChHHHHHHHhhCCCccEEeecCCCCCCcccccccchhhhhhhcCC-CCCceEEecccccCCCCCcc
Q 015585           16 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSC-HHLTGLSLTRCRHNHQGTFK   94 (404)
Q Consensus        16 ~~~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~   94 (404)
                      .++|++|+++++.++.. +    ...++|++|++.++..         +     .+..+ +.|++|+++++.      +.
T Consensus        57 ~~~L~~L~Ls~N~l~~l-p----~~~~~L~~L~l~~n~l---------~-----~l~~lp~~L~~L~L~~n~------l~  111 (353)
T d1jl5a_          57 PPHLESLVASCNSLTEL-P----ELPQSLKSLLVDNNNL---------K-----ALSDLPPLLEYLGVSNNQ------LE  111 (353)
T ss_dssp             CTTCSEEECCSSCCSSC-C----CCCTTCCEEECCSSCC---------S-----CCCSCCTTCCEEECCSSC------CS
T ss_pred             CCCCCEEECCCCCCccc-c----cchhhhhhhhhhhccc---------c-----hhhhhccccccccccccc------cc
Confidence            47899999999888732 1    3367999999998732         1     12222 469999998753      22


Q ss_pred             ccChhhHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCCCCC
Q 015585           95 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI  174 (404)
Q Consensus        95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  174 (404)
                      .+...      ..+++|+.|+++++.....      ......+..+.+..........    ...++.++.+.+.++...
T Consensus       112 ~lp~~------~~l~~L~~L~l~~~~~~~~------~~~~~~l~~l~~~~~~~~~~~~----l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         112 KLPEL------QNSSFLKIIDVDNNSLKKL------PDLPPSLEFIAAGNNQLEELPE----LQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             SCCCC------TTCTTCCEEECCSSCCSCC------CCCCTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCS
T ss_pred             cccch------hhhccceeecccccccccc------ccccccccchhhcccccccccc----ccccccceeccccccccc
Confidence            23221      4578999999987532111      1123566777766553221111    124566777777665321


Q ss_pred             CHHHHHHhhCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCccCHHHHHHHHhcCCCcCEEeecCCCCCcHHH-
Q 015585          175 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKG-  253 (404)
Q Consensus       175 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~-  253 (404)
                      ..     .......+.+..... .+.  .+.....++.|+.+++..+.....     .....++..+.+.++. +.... 
T Consensus       176 ~~-----~~~~~~~~~l~~~~~-~~~--~~~~~~~l~~L~~l~l~~n~~~~~-----~~~~~~l~~~~~~~~~-~~~~~~  241 (353)
T d1jl5a_         176 KL-----PDLPLSLESIVAGNN-ILE--ELPELQNLPFLTTIYADNNLLKTL-----PDLPPSLEALNVRDNY-LTDLPE  241 (353)
T ss_dssp             SC-----CCCCTTCCEEECCSS-CCS--SCCCCTTCTTCCEEECCSSCCSSC-----CSCCTTCCEEECCSSC-CSCCCC
T ss_pred             cc-----ccccccccccccccc-ccc--cccccccccccccccccccccccc-----cccccccccccccccc-cccccc
Confidence            10     001122233333321 111  111223445566666555432210     1122334444443332 11000 


Q ss_pred             -HHHH---------HhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHhhCCCcccC
Q 015585          254 -ISHL---------LCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS  323 (404)
Q Consensus       254 -~~~l---------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~  323 (404)
                       ...+         ..+...........++... .+.     .+...+++|++|++++|. ++.     +..      ..
T Consensus       242 ~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~-----~~~~~~~~L~~L~Ls~N~-l~~-----lp~------~~  303 (353)
T d1jl5a_         242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIR-----SLCDLPPSLEELNVSNNK-LIE-----LPA------LP  303 (353)
T ss_dssp             CCTTCCEEECCSSCCSEESCCCTTCCEEECCSS-CCS-----EECCCCTTCCEEECCSSC-CSC-----CCC------CC
T ss_pred             ccccccccccccccccccccccchhcccccccC-ccc-----cccccCCCCCEEECCCCc-cCc-----ccc------cc
Confidence             0000         0000000112222233221 111     111235789999999885 442     222      46


Q ss_pred             CCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585          324 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       324 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                      ++|+.|++++| .++..     . ..+++|++|++++|+++..
T Consensus       304 ~~L~~L~L~~N-~L~~l-----~-~~~~~L~~L~L~~N~L~~l  339 (353)
T d1jl5a_         304 PRLERLIASFN-HLAEV-----P-ELPQNLKQLHVEYNPLREF  339 (353)
T ss_dssp             TTCCEEECCSS-CCSCC-----C-CCCTTCCEEECCSSCCSSC
T ss_pred             CCCCEEECCCC-cCCcc-----c-cccCCCCEEECcCCcCCCC
Confidence            78999999885 56532     1 2356899999999988644

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4e-09  Score=88.06  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=15.0

Q ss_pred             CCcEEeccCCCCChHHHHHHHhhCCCccEEeecCC
Q 015585           18 NLRSLSLVLDVITDELLITITASLPFLVELDLEDR   52 (404)
Q Consensus        18 ~L~~L~L~~~~~~~~~~~~i~~~~~~L~~L~l~~~   52 (404)
                      ++++|+++++.++......+ ..+++|++|++++|
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f-~~l~~L~~L~ls~n   63 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQN   63 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTT-TTCTTCCEEEEESC
T ss_pred             CCCEEECcCCcCCccChhHh-hccchhhhhhhccc
Confidence            45555555544442111112 22555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.28  E-value=3e-08  Score=79.58  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=29.2

Q ss_pred             CCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHH-HHHHHHhhCCCcccCCCCcEEeccCC
Q 015585          266 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDA-SVEALARKQPDQEKSKQLRRLDLCNC  334 (404)
Q Consensus       266 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~~~L~~L~l~~~  334 (404)
                      +.|+.|+++++ .++...  .+ ..+++|+.|++++|. +++. .+..+.       .+++|+.|+++++
T Consensus        93 ~~L~~L~l~~N-~i~~l~--~~-~~l~~L~~L~L~~N~-i~~~~~~~~l~-------~l~~L~~L~L~~N  150 (198)
T d1m9la_          93 DTLEELWISYN-QIASLS--GI-EKLVNLRVLYMSNNK-ITNWGEIDKLA-------ALDKLEDLLLAGN  150 (198)
T ss_dssp             HHCCEEECSEE-ECCCHH--HH-HHHHHSSEEEESEEE-CCCHHHHHHHT-------TTTTCSEEEECSS
T ss_pred             ccccccccccc-cccccc--cc-cccccccccccccch-hcccccccccc-------CCCccceeecCCC
Confidence            35666666654 444321  11 133566666666663 4432 233444       3666777776664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.25  E-value=4e-08  Score=78.80  Aligned_cols=104  Identities=15%  Similarity=0.130  Sum_probs=46.8

Q ss_pred             CCCccEEeecCCCCCCcccccccchhhhhhhcCCCCCceEEecccccCCCCCccccChhhHHHHHhcCCCCcEEEcCCCC
Q 015585           41 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS  120 (404)
Q Consensus        41 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~  120 (404)
                      +++|++|++++|         .++.  ++.+..+++|+.|+++++.      +..+.  .+.   ..+++|+.|+++++ 
T Consensus        47 L~~L~~L~Ls~n---------~I~~--i~~l~~l~~L~~L~Ls~N~------i~~i~--~~~---~~~~~L~~L~l~~N-  103 (198)
T d1m9la_          47 LKACKHLALSTN---------NIEK--ISSLSGMENLRILSLGRNL------IKKIE--NLD---AVADTLEELWISYN-  103 (198)
T ss_dssp             TTTCCEEECSEE---------EESC--CCCHHHHTTCCEEECCEEE------ECSCS--SHH---HHHHHCCEEECSEE-
T ss_pred             ccccceeECccc---------CCCC--cccccCCccccChhhcccc------ccccc--ccc---cccccccccccccc-
Confidence            666777777664         2221  2234556666666666643      11121  111   11235666666553 


Q ss_pred             CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccCC
Q 015585          121 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC  171 (404)
Q Consensus       121 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  171 (404)
                      .++..  .. +..+++|+.|+++++..-....+.. ...+++|+.|+++++
T Consensus       104 ~i~~l--~~-~~~l~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         104 QIASL--SG-IEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGN  150 (198)
T ss_dssp             ECCCH--HH-HHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSS
T ss_pred             ccccc--cc-ccccccccccccccchhcccccccc-ccCCCccceeecCCC
Confidence            33321  11 2334556666665553111122222 234555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=2.5e-07  Score=67.87  Aligned_cols=42  Identities=21%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             hhCCCCCCEEeccCCCCCCh-HHHHhhhCCCCCCEEEccCCccC
Q 015585          182 LASSRNLEVLDLGGCKSIAD-TCLRSISCLRKLTALNLTGADIT  224 (404)
Q Consensus       182 l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~  224 (404)
                      ++.+++|++|+++++ .+.. ..+..+..+++|+.|++++|.++
T Consensus        61 ~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          61 VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cccccccCeEECCCC-ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            445555666666552 3332 22334455566666666655443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=2.7e-07  Score=67.63  Aligned_cols=37  Identities=16%  Similarity=0.318  Sum_probs=17.5

Q ss_pred             cCCCCcEEEcCCCCCCCHH-HHHHHHHhCCCCcEEEecCC
Q 015585          107 GCKGLESVRLGGFSKVSDA-GFAAILLSCHSLKKFEVRSA  145 (404)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~  145 (404)
                      .+++|+.|+++++ .++.. .+.. +..+++|+.|+++++
T Consensus        63 ~l~~L~~L~l~~N-~i~~~~~~~~-l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          63 NLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGN  100 (124)
T ss_dssp             TCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTS
T ss_pred             cccccCeEECCCC-ccCCCCCchh-hcCCCCCCEEECCCC
Confidence            4555666666553 22221 1111 344556666666555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.06  E-value=6.2e-08  Score=77.45  Aligned_cols=112  Identities=15%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             CCcCEEeecCCCCCcHHHHHHHHhhcCCCCCCccEEecCCCCCCCHHHHHHHHHhCCCCceEeecCCCCCCHHHHHHHHh
Q 015585          236 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR  315 (404)
Q Consensus       236 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~  315 (404)
                      +++++|+++++. ++.......+    ..+++|+.|++++. .+...... ....+++|++|++++|. ++...-..+. 
T Consensus        29 ~~l~~L~Ls~N~-i~~~~~~~~f----~~l~~L~~L~L~~N-~i~~~~~~-~~~~~~~L~~L~Ls~N~-l~~l~~~~F~-   99 (192)
T d1w8aa_          29 LHTTELLLNDNE-LGRISSDGLF----GRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGENK-IKEISNKMFL-   99 (192)
T ss_dssp             TTCSEEECCSCC-CCSBCCSCSG----GGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSCC-CCEECSSSST-
T ss_pred             CCCCEEEeCCCC-Cccccccccc----CCCceEeeeecccc-cccccccc-ccccccccceeeecccc-ccccCHHHHh-
Confidence            579999999886 4321111111    35789999999885 44332211 22346899999999985 5432222222 


Q ss_pred             hCCCcccCCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccC
Q 015585          316 KQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS  365 (404)
Q Consensus       316 ~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~  365 (404)
                            ++++|+.|++++ +.++......+.  .+++|++|++++|++..
T Consensus       100 ------~l~~L~~L~L~~-N~l~~i~~~~f~--~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         100 ------GLHQLKTLNLYD-NQISCVMPGSFE--HLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ------TCTTCCEEECCS-SCCCEECTTSST--TCTTCCEEECTTCCBCC
T ss_pred             ------CCCcccccccCC-ccccccCHHHhc--CCccccccccccccccc
Confidence                  588999999999 477764444443  48899999999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.91  E-value=8e-07  Score=70.75  Aligned_cols=36  Identities=11%  Similarity=0.085  Sum_probs=15.6

Q ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHhCCCCcEEEecCC
Q 015585          109 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA  145 (404)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  145 (404)
                      +++++|+++++ .++.......+..+++|+.|+++++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N   64 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN   64 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeecccc
Confidence            35666666663 3321100111233455555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.2e-06  Score=64.48  Aligned_cols=41  Identities=22%  Similarity=0.171  Sum_probs=18.9

Q ss_pred             CCCCcEEeccCCCCCCHHHHHhhhcCCCCcccEEecCCccccCC
Q 015585          323 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK  366 (404)
Q Consensus       323 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~l~~~  366 (404)
                      +++|+.|++++ +.++......+.  .+++|++|++++|.++..
T Consensus        55 l~~L~~L~Ls~-N~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~l   95 (156)
T d2ifga3          55 LGELRNLTIVK-SGLRFVAPDAFH--FTPRLSRLNLSFNALESL   95 (156)
T ss_dssp             CCCCSEEECCS-SCCCEECTTGGG--SCSCCCEEECCSSCCSCC
T ss_pred             ccccCcceeec-cccCCccccccc--ccccccceeccCCCCccc
Confidence            44555555555 244433222222  245555555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=7e-05  Score=56.78  Aligned_cols=40  Identities=15%  Similarity=0.128  Sum_probs=17.9

Q ss_pred             hCCCCCCEEeccCCCCCChHHHHhhhCCCCCCEEEccCCcc
Q 015585          183 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI  223 (404)
Q Consensus       183 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l  223 (404)
                      ..+++|+.|++++ +.+......++..+++|+.|+|++|++
T Consensus        53 ~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          53 RGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             CSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             ccccccCcceeec-cccCCcccccccccccccceeccCCCC
Confidence            3444555555544 233333333344444555555554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00019  Score=54.62  Aligned_cols=86  Identities=19%  Similarity=0.164  Sum_probs=50.6

Q ss_pred             HHHHhCCCCceEeecCCCCCCHH-HHHHHHhhCCCcccCCCCcEEeccCCCCCCH-HHHHhhhcCCCCcccEEecCCccc
Q 015585          286 TIAAAGIGIIDLCVRSCFYVTDA-SVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRGLHWLGIGQTRL  363 (404)
Q Consensus       286 ~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~l  363 (404)
                      .+...+++|+.|++++|. +++. ++.....      .+++|+.|++++ +.+++ ..+..+.   ...|+.|++++|++
T Consensus        59 ~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~------~l~~L~~L~Ls~-N~i~~l~~l~~l~---~~~L~~L~L~~Npl  127 (162)
T d1koha1          59 IIEENIPELLSLNLSNNR-LYRLDDMSSIVQ------KAPNLKILNLSG-NELKSERELDKIK---GLKLEELWLDGNSL  127 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSC-CCCCSGGGTHHH------HSTTCCCCCCTT-SCCCCGGGHHHHT---TCCCSSCCCTTSTT
T ss_pred             HHHHhCCCCCEeeCCCcc-ccCCchhHHHHh------hCCccccccccc-Cccccchhhhhhh---ccccceeecCCCCc
Confidence            344557788888888774 5432 1222222      477788888887 45554 2233332   45688888888877


Q ss_pred             cCCC---hHHHHHHHhcCCccE
Q 015585          364 ASKG---NPVITEIHNERPWLT  382 (404)
Q Consensus       364 ~~~~---~~~~~~~~~~~~~l~  382 (404)
                      ....   ......+.+.+|+++
T Consensus       128 ~~~~~~~~~y~~~i~~~~P~L~  149 (162)
T d1koha1         128 SDTFRDQSTYISAIRERFPKLL  149 (162)
T ss_dssp             SSSSSSHHHHHHHHHTTSTTCC
T ss_pred             CcCcccchhHHHHHHHHCCCCC
Confidence            5431   223445567778776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00067  Score=51.48  Aligned_cols=11  Identities=45%  Similarity=0.893  Sum_probs=4.6

Q ss_pred             CCCCCEEeccC
Q 015585          185 SRNLEVLDLGG  195 (404)
Q Consensus       185 ~~~L~~L~l~~  195 (404)
                      +++|+.|++++
T Consensus        90 l~~L~~L~Ls~  100 (162)
T d1koha1          90 APNLKILNLSG  100 (162)
T ss_dssp             STTCCCCCCTT
T ss_pred             CCccccccccc
Confidence            34444444443