Citrus Sinensis ID: 015588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
MRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK
cccHHHHHHHHHHHccccccccccccccccEEEEEEEEccccEEcHHHcccccccccccEEEEccEEEEEEEEEccccccEEEEEEEEEccccEEEEEEccccccEEEEcccccccHHHHHHccccccccccccccccccccccccccEEEEccccEEEEEHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEEcccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHcHHccccccc
ccHHHHHHHHHHHHcccccEEEEccEcccEEEEcEEcEccccEEccHHHHHHHcccccEEEEEccEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEccEEEEEEccHHHHHHHHHHHcccccccccEEcccccEEEEccEEEEEEEccccccccccccEEEEcHHHccccccccccccccccccccccccccccccEcccccccccHHHHHEHccccccccccccEEEEEEEccccccccEEEEEEcccccccccEEccccccHHHHHHHHHHHHHHHHHHHcccHHHccccccccccEEcEEccccccccccccccHHHHHHHHHHHcEEccccEEcccEcccEccccEEcccEcEEEccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
MRQWQSAVRDGLVEvgvlpyngftydhmygtkiggtifdqngqrhTAADLLEYANPSGLTLLLHASVHKVLFRIkgkarpvahgvvfrdatgakhraylkngpkneiivsagalgspqllmlsgahnitvvldqplvgqgmsdnpmnaifvpspvpVEVSLIQVVGITqfgsyieaasgenfaggspsprdygmfspkigqlskvppkqrtpEAIAEAIENMKalddpafrggfilekvmgpvstghlelrtrnpndnpsvtfnyfkepedlqRCVQGISTIEKIIESKsfskfkyesmsVPILVNMtasapvnllprhsnastslEQFCRDTVMTIWHyhggcqvgkvvdhdykvlGVDALrvidgstfyyspgtnpqATVMMLGRYMGVRILSErlasndsk
mrqwqsavrdgLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIkgkarpvahgvvfrdatgakHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIgqlskvppkqRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHlelrtrnpndnpSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGstfyyspgtnpqATVMMLGRYMGVRILserlasndsk
MRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGistiekiiesksfskfkYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK
******AVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAA***********************************************LDDPAFRGGFILEKVMGPVSTGHL************VTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL**********
*RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI***********
********RDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK
MRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLA*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query404 2.2.26 [Sep-21-2011]
Q9S746594 Protein HOTHEAD OS=Arabid no no 0.972 0.661 0.544 1e-121
Q9SSM2552 (R)-mandelonitrile lyase- no no 0.893 0.653 0.447 1e-85
P52706563 (R)-mandelonitrile lyase N/A no 0.888 0.637 0.380 3e-70
Q945K2563 (R)-mandelonitrile lyase N/A no 0.893 0.641 0.374 4e-69
O50048576 (R)-mandelonitrile lyase N/A no 0.896 0.628 0.376 3e-68
P52707573 (R)-mandelonitrile lyase N/A no 0.900 0.635 0.355 3e-66
O82784574 (R)-mandelonitrile lyase N/A no 0.900 0.634 0.362 4e-64
O24243559 (R)-mandelonitrile lyase N/A no 0.861 0.622 0.356 5e-63
B2JS89572 Choline dehydrogenase OS= yes no 0.777 0.548 0.277 9e-16
Q6FDF9553 Choline dehydrogenase OS= yes no 0.794 0.580 0.265 1e-15
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1 Back     alignment and function desciption
 Score =  437 bits (1123), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/408 (54%), Positives = 282/408 (69%), Gaps = 15/408 (3%)

Query: 4   WQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLL 63
           WQ A+RD L+EVGV P+NGFTYDH+ GTKIGGTIFD+ G+RHTAA+LL YANP  L +L+
Sbjct: 187 WQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQKLRVLI 246

Query: 64  HASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123
           +A+V K++F   G  RP   GV+F+D  G +H+A L N   +E+I+S+GA+GSPQ+LMLS
Sbjct: 247 YATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLS 305

Query: 124 GAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIE 175
           G           I VVL+   VG+GM+DNPMN I VPS  P+E SLIQ VGIT+ G Y+E
Sbjct: 306 GIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITKMGVYVE 365

Query: 176 AASGENFAGGSPSP--RDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
           A++G    G SP      YG+ S K    S +P KQR PEA    I   K     AF G 
Sbjct: 366 ASTG---FGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLHEAFNGS 422

Query: 234 FILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSK 293
           FILEK+  P+S GHL L   N +DNPSVTFNYFK P DLQRCV+ I  + K++ S  F  
Sbjct: 423 FILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVTSNRFLN 482

Query: 294 F-KYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
           + + +  +V  +++++  A +NL P+  N + S+ QFC+DTV+TIWHYHGGC VGKVV  
Sbjct: 483 YTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLVGKVVSP 542

Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 400
           + KVLGVD LRVIDGSTF  SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct: 543 NRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1 Back     alignment and function description
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1 Back     alignment and function description
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1 Back     alignment and function description
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1 Back     alignment and function description
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1 Back     alignment and function description
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1 Back     alignment and function description
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1 Back     alignment and function description
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
359474260 578 PREDICTED: protein HOTHEAD isoform 1 [Vi 0.997 0.697 0.798 0.0
356514078 581 PREDICTED: protein HOTHEAD-like [Glycine 0.980 0.681 0.785 0.0
356563226 581 PREDICTED: protein HOTHEAD-like [Glycine 0.980 0.681 0.778 0.0
224053991 577 predicted protein [Populus trichocarpa] 0.990 0.693 0.8 0.0
359474262 568 PREDICTED: protein HOTHEAD isoform 2 [Vi 0.972 0.691 0.779 0.0
357481761 580 Choline dehydrogenase [Medicago truncatu 0.990 0.689 0.739 0.0
449452496 578 PREDICTED: protein HOTHEAD-like [Cucumis 0.982 0.686 0.748 0.0
449495903 580 PREDICTED: protein HOTHEAD-like [Cucumis 0.982 0.684 0.748 1e-180
357481759 580 Choline dehydrogenase [Medicago truncatu 0.992 0.691 0.713 1e-176
255537255 548 glucose-methanol-choline (gmc) oxidoredu 0.913 0.673 0.748 1e-176
>gi|359474260|ref|XP_002282510.2| PREDICTED: protein HOTHEAD isoform 1 [Vitis vinifera] gi|297742610|emb|CBI34759.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/412 (79%), Positives = 368/412 (89%), Gaps = 9/412 (2%)

Query: 1   MRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLT 60
           MRQWQSAVRDGL+EVGVLPYNGFTYDH+YGTKIGGTIFD +G RHTAADLL+YANP+GLT
Sbjct: 168 MRQWQSAVRDGLLEVGVLPYNGFTYDHIYGTKIGGTIFDPDGHRHTAADLLQYANPTGLT 227

Query: 61  LLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120
           +LLHA+VHK+ FR +GK RPVAHGV+FRD  G KH+AYLK   KNEIIVS+GALGSPQLL
Sbjct: 228 VLLHATVHKITFRRRGKVRPVAHGVIFRDVLGKKHKAYLKRDSKNEIIVSSGALGSPQLL 287

Query: 121 MLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGS 172
           MLSG        AHNI++VLD P+VGQ MSDNPMNAIF+PSP+PVEVSLIQVVGIT  G+
Sbjct: 288 MLSGVGPAQQIKAHNISLVLDLPMVGQRMSDNPMNAIFIPSPLPVEVSLIQVVGITHSGT 347

Query: 173 YIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRG 232
           YIEAASGENFA   P  RD+GMFSPKIGQL+ VPPKQRTPEAIA+AI++M  LD+ AFRG
Sbjct: 348 YIEAASGENFAASGPQ-RDFGMFSPKIGQLATVPPKQRTPEAIAKAIDSMSKLDETAFRG 406

Query: 233 GFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFS 292
           GFILEK+MGP+STGHLEL++RNPNDNPSVTFNYFKEPEDLQRCV G+  IEKIIESK+FS
Sbjct: 407 GFILEKIMGPISTGHLELQSRNPNDNPSVTFNYFKEPEDLQRCVNGMQIIEKIIESKAFS 466

Query: 293 KFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
           +FKY+ +SVP L+NMT + PVNL+PRH NASTSLEQFC+DTVMTIWHYHGGCQVG VVDH
Sbjct: 467 QFKYDYLSVPALINMTLNFPVNLVPRHDNASTSLEQFCKDTVMTIWHYHGGCQVGSVVDH 526

Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDSK 404
           DYKVLGVDALRVIDGSTF  SPGTNPQATVMMLGRYMG+RILSERLAS+ SK
Sbjct: 527 DYKVLGVDALRVIDGSTFNASPGTNPQATVMMLGRYMGLRILSERLASDLSK 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356514078|ref|XP_003525734.1| PREDICTED: protein HOTHEAD-like [Glycine max] Back     alignment and taxonomy information
>gi|356563226|ref|XP_003549865.1| PREDICTED: protein HOTHEAD-like [Glycine max] Back     alignment and taxonomy information
>gi|224053991|ref|XP_002298074.1| predicted protein [Populus trichocarpa] gi|222845332|gb|EEE82879.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474262|ref|XP_003631426.1| PREDICTED: protein HOTHEAD isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357481761|ref|XP_003611166.1| Choline dehydrogenase [Medicago truncatula] gi|355512501|gb|AES94124.1| Choline dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449452496|ref|XP_004143995.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449495903|ref|XP_004159980.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357481759|ref|XP_003611165.1| Choline dehydrogenase [Medicago truncatula] gi|355512500|gb|AES94123.1| Choline dehydrogenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255537255|ref|XP_002509694.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] gi|223549593|gb|EEF51081.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query404
TAIR|locus:2034705572 AT1G12570 [Arabidopsis thalian 0.950 0.671 0.613 6.6e-129
TAIR|locus:2173068586 AT5G51950 [Arabidopsis thalian 0.970 0.668 0.577 1.4e-119
TAIR|locus:2078441577 AT3G56060 [Arabidopsis thalian 0.970 0.679 0.553 1.9e-115
TAIR|locus:2032627594 HTH "HOTHEAD" [Arabidopsis tha 0.972 0.661 0.536 1.9e-106
TAIR|locus:2173053582 AT5G51930 [Arabidopsis thalian 0.935 0.649 0.535 1.9e-106
TAIR|locus:2032642552 AT1G73050 [Arabidopsis thalian 0.433 0.317 0.5 8.3e-83
UNIPROTKB|Q945K2563 MDL2 "(R)-mandelonitrile lyase 0.403 0.289 0.422 2.4e-64
TAIR|locus:2035830501 AT1G14190 [Arabidopsis thalian 0.368 0.297 0.428 2.4e-63
TAIR|locus:505006121503 AT1G14185 [Arabidopsis thalian 0.423 0.339 0.421 8.1e-63
UNIPROTKB|G4N440625 MGG_16853 "Uncharacterized pro 0.762 0.492 0.292 2.9e-16
TAIR|locus:2034705 AT1G12570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
 Identities = 256/417 (61%), Positives = 301/417 (72%)

Query:     1 MRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLT 60
             M +WQ+AVRDGL+E G++P NGFTYDH+ GTK GGTIFD+NG RHTAADLLEYA+P G+T
Sbjct:   167 MGRWQTAVRDGLLEAGIVPNNGFTYDHINGTKFGGTIFDRNGNRHTAADLLEYADPKGIT 226

Query:    61 LLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 120
             +LLHA+VH++LFR +G  +P+A+GVV+RD TG  HRAYLK G  +EII+SAG LGSPQLL
Sbjct:   227 VLLHATVHRILFRTRGTTKPIANGVVYRDRTGQAHRAYLKEGALSEIILSAGTLGSPQLL 286

Query:   121 MLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGS 172
             MLSG        A NITVV+DQP VGQGM DNPMNA+FVPSPVPVEVSLI+VVGIT  G+
Sbjct:   287 MLSGVGPSAQLQAQNITVVMDQPHVGQGMYDNPMNAVFVPSPVPVEVSLIEVVGITGEGT 346

Query:   173 YIEAASGENFAGG------SPSPRDY-GMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 225
             Y+EAA GENF GG      S S RDY  MFSP+                + E+    K  
Sbjct:   347 YVEAAGGENFGGGGGGSSGSSSTRDYYAMFSPRA--------------TLLESNSMTKLS 392

Query:   226 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXX 285
                 F+GGF+LEKVMGP+STGHLEL+TRNP DNP VTFNYF+ P+DL+RCV+G       
Sbjct:   393 SAQPFQGGFLLEKVMGPLSTGHLELKTRNPKDNPIVTFNYFQHPDDLKRCVRGIQTIERV 452

Query:   286 XXXXXXXXXXYESMSVPILVNMTASAPVNLLPRHSNASTSL----EQFCRDTVMTIWHYH 341
                       Y  +S   L+N+TAS PVNL P  S    SL    E+FC+ TV TIWHYH
Sbjct:   453 VQSKAFSRYKYADVSFEYLLNLTASTPVNLRPPRSGPGASLPPSAEEFCQHTVTTIWHYH 512

Query:   342 GGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 398
             GGC VG+VVD DYKV+G+D LRVID ST  Y PGTNPQATVMMLGRYMGV+IL ERL
Sbjct:   513 GGCVVGRVVDGDYKVIGIDRLRVIDMSTVGYCPGTNPQATVMMLGRYMGVKILRERL 569
GO:0005576 "extracellular region" evidence=ISM
GO:0006066 "alcohol metabolic process" evidence=IEA
GO:0008812 "choline dehydrogenase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0016832 "aldehyde-lyase activity" evidence=ISS
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2173068 AT5G51950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078441 AT3G56060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032627 HTH "HOTHEAD" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173053 AT5G51930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032642 AT1G73050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q945K2 MDL2 "(R)-mandelonitrile lyase 2" [Prunus dulcis (taxid:3755)] Back     alignment and assigned GO terms
TAIR|locus:2035830 AT1G14190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006121 AT1G14185 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N440 MGG_16853 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001080001
SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (544 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
PLN02785587 PLN02785, PLN02785, Protein HOTHEAD 0.0
pfam05199139 pfam05199, GMC_oxred_C, GMC oxidoreductase 7e-27
COG2303542 COG2303, BetA, Choline dehydrogenase and related f 2e-26
TIGR01810532 TIGR01810, betA, choline dehydrogenase 2e-18
PRK02106560 PRK02106, PRK02106, choline dehydrogenase; Validat 7e-14
PRK02106560 PRK02106, PRK02106, choline dehydrogenase; Validat 6e-13
TIGR03970487 TIGR03970, Rv0697, dehydrogenase, Rv0697 family 3e-11
pfam00732218 pfam00732, GMC_oxred_N, GMC oxidoreductase 6e-07
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD Back     alignment and domain information 
 Score =  583 bits (1505), Expect = 0.0
 Identities = 249/405 (61%), Positives = 307/405 (75%), Gaps = 13/405 (3%)

Query: 4   WQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLL 63
           WQ+A+RD L+EVGV P+NGFTYDH+YGTK+GGTIFD+ G+RHTAA+LL   NP+ L +LL
Sbjct: 180 WQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLL 239

Query: 64  HASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 123
           HA+V K++F   GK RP A GV+F+D  G +H+A+L N   +EII+SAGA+GSPQ+L+LS
Sbjct: 240 HATVQKIVFDTSGK-RPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLS 298

Query: 124 G--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIE 175
           G         H I VVL    VG+GM+DNPMN+IFVPS  PVE SLIQ VGIT+ G YIE
Sbjct: 299 GIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTVGITKMGVYIE 358

Query: 176 AASGENFAGGSPSPR-DYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGF 234
           A+SG  F     S    +G+ S +IGQLS +PPKQRTPEAI   I   K L   AF GGF
Sbjct: 359 ASSG--FGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGF 416

Query: 235 ILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF 294
           ILEK+ GP+STGHL L   N +DNPSVTFNYFK P+DLQRCV GI TIEKI+++  F+ F
Sbjct: 417 ILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNF 476

Query: 295 -KYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHD 353
            + +  ++  ++NM+  A +NL+P+H+N + SLEQFC+DTV+TIWHYHGGC VGKVVD +
Sbjct: 477 TQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQN 536

Query: 354 YKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 398
           YKVLGV  LRVIDGSTF  SPGTNPQATVMM+GRYMGV+IL ERL
Sbjct: 537 YKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERL 581

Length = 587
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase Back     alignment and domain information
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase Back     alignment and domain information
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family Back     alignment and domain information
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 404
KOG1238623 consensus Glucose dehydrogenase/choline dehydrogen 100.0
PLN02785587 Protein HOTHEAD 100.0
TIGR01810532 betA choline dehydrogenase. This enzyme is a membe 100.0
PRK02106560 choline dehydrogenase; Validated 100.0
COG2303542 BetA Choline dehydrogenase and related flavoprotei 100.0
TIGR02462544 pyranose_ox pyranose oxidase. Pyranose oxidase (al 100.0
PF05199144 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078 100.0
PF00732296 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 99.93
PRK12835584 3-ketosteroid-delta-1-dehydrogenase; Reviewed 96.79
PRK12837513 3-ketosteroid-delta-1-dehydrogenase; Provisional 96.3
PRK07843557 3-ketosteroid-delta-1-dehydrogenase; Reviewed 96.09
PRK12844557 3-ketosteroid-delta-1-dehydrogenase; Reviewed 95.94
PRK12839572 hypothetical protein; Provisional 95.9
PRK07121492 hypothetical protein; Validated 95.71
PRK08274466 tricarballylate dehydrogenase; Validated 95.4
PRK12845564 3-ketosteroid-delta-1-dehydrogenase; Reviewed 95.26
KOG2404477 consensus Fumarate reductase, flavoprotein subunit 95.23
PF00890417 FAD_binding_2: FAD binding domain of the Pfam fami 94.93
PRK13977576 myosin-cross-reactive antigen; Provisional 94.8
PRK12843578 putative FAD-binding dehydrogenase; Reviewed 94.66
PRK06134581 putative FAD-binding dehydrogenase; Reviewed 94.65
TIGR01813439 flavo_cyto_c flavocytochrome c. This model describ 94.62
PRK05675570 sdhA succinate dehydrogenase flavoprotein subunit; 94.42
TIGR01811 603 sdhA_Bsu succinate dehydrogenase or fumarate reduc 94.4
PRK06263543 sdhA succinate dehydrogenase flavoprotein subunit; 94.34
PRK09078598 sdhA succinate dehydrogenase flavoprotein subunit; 94.19
PRK07573 640 sdhA succinate dehydrogenase flavoprotein subunit; 93.91
TIGR01816565 sdhA_forward succinate dehydrogenase, flavoprotein 93.85
PRK06175433 L-aspartate oxidase; Provisional 93.77
PRK08958588 sdhA succinate dehydrogenase flavoprotein subunit; 93.54
PTZ00139617 Succinate dehydrogenase [ubiquinone] flavoprotein 93.54
PF06039488 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro 93.14
PRK12842574 putative succinate dehydrogenase; Reviewed 93.14
PLN00128635 Succinate dehydrogenase [ubiquinone] flavoprotein 93.11
PTZ00306 1167 NADH-dependent fumarate reductase; Provisional 92.93
PRK08275554 putative oxidoreductase; Provisional 92.78
PRK12834549 putative FAD-binding dehydrogenase; Reviewed 92.76
PRK06452566 sdhA succinate dehydrogenase flavoprotein subunit; 92.72
PRK06481506 fumarate reductase flavoprotein subunit; Validated 92.72
PLN02815594 L-aspartate oxidase 92.34
PRK08641589 sdhA succinate dehydrogenase flavoprotein subunit; 92.32
COG0029518 NadB Aspartate oxidase [Coenzyme metabolism] 92.3
PRK07803 626 sdhA succinate dehydrogenase flavoprotein subunit; 92.25
PRK09077536 L-aspartate oxidase; Provisional 92.13
PRK07395553 L-aspartate oxidase; Provisional 91.88
PRK08626 657 fumarate reductase flavoprotein subunit; Provision 91.62
PRK07057591 sdhA succinate dehydrogenase flavoprotein subunit; 91.58
PRK08071510 L-aspartate oxidase; Provisional 91.19
TIGR01812566 sdhA_frdA_Gneg succinate dehydrogenase or fumarate 91.17
PRK05945575 sdhA succinate dehydrogenase flavoprotein subunit; 90.96
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 90.83
TIGR01176580 fum_red_Fp fumarate reductase, flavoprotein subuni 90.83
PRK08205583 sdhA succinate dehydrogenase flavoprotein subunit; 90.64
PRK09231582 fumarate reductase flavoprotein subunit; Validated 90.6
TIGR03377516 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase 90.08
PLN02464627 glycerol-3-phosphate dehydrogenase 89.64
PRK11101546 glpA sn-glycerol-3-phosphate dehydrogenase subunit 88.62
TIGR02061 614 aprA adenosine phosphosulphate reductase, alpha su 88.34
PRK06854 608 adenylylsulfate reductase subunit alpha; Validated 88.3
PRK07512513 L-aspartate oxidase; Provisional 88.29
TIGR00551488 nadB L-aspartate oxidase. L-aspartate oxidase is t 88.23
PRK13800 897 putative oxidoreductase/HEAT repeat-containing pro 88.08
PRK06069577 sdhA succinate dehydrogenase flavoprotein subunit; 87.96
TIGR03378419 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase 86.67
PF13738203 Pyr_redox_3: Pyridine nucleotide-disulphide oxidor 86.41
PRK07804541 L-aspartate oxidase; Provisional 86.09
TIGR02485432 CobZ_N-term precorrin 3B synthase CobZ. CobZ is es 85.25
PTZ00383497 malate:quinone oxidoreductase; Provisional 84.67
TIGR01320483 mal_quin_oxido malate:quinone-oxidoreductase. This 83.55
PF01134392 GIDA: Glucose inhibited division protein A; InterP 83.3
COG0579429 Predicted dehydrogenase [General function predicti 81.92
PF03486409 HI0933_like: HI0933-like protein; InterPro: IPR004 81.09
TIGR02730493 carot_isom carotene isomerase. Members of this fam 80.99
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-71  Score=553.06  Aligned_cols=370  Identities=39%  Similarity=0.569  Sum_probs=280.8

Q ss_pred             hhHHHHHHHHHHcCCcCCCCCcccCCCceeeEEEEE---CCCCceecHHH-hhh-hc-CCCCeEEecCcEEEEEEEecCC
Q 015588            3 QWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIF---DQNGQRHTAAD-LLE-YA-NPSGLTLLLHASVHKVLFRIKG   76 (404)
Q Consensus         3 p~~~~~~~a~~~~G~~~~~~~~~d~~~g~~~g~~~~---~~~g~R~s~~~-~l~-~~-~r~nl~v~~~a~V~rv~~~~~~   76 (404)
                      |....|.++..|+|. +.    .|.++....|+.+.   .++|.|+|++. |+. .. .|+||++..++.|+||++|..+
T Consensus       212 ~~~~~~~~ag~e~G~-~~----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~  286 (623)
T KOG1238|consen  212 NLFTAFHRAGTEIGG-SI----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAG  286 (623)
T ss_pred             chhhHhHHhHHhcCC-Cc----cCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCC
Confidence            567788899999994 44    35666666665442   38999999987 875 44 4899999999999999999654


Q ss_pred             CCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCcccCCcCcCCCCce
Q 015588           77 KARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA  148 (404)
Q Consensus        77 ~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p~VG~nl~DH~~~~  148 (404)
                         ++|.||++....|+.++++    ++||||||||||+||||||+||        ++|||++.|||+||+|||||+..+
T Consensus       287 ---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~  359 (623)
T KOG1238|consen  287 ---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP  359 (623)
T ss_pred             ---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc
Confidence               5899999986337888886    8999999999999999999999        999999999999999999999987


Q ss_pred             eeeeCCCCccchhhhhhccchhhhhHHhhccccccCCCCCCCcccccCcccCccc-cCCC-----------CCC------
Q 015588          149 IFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLS-KVPP-----------KQR------  210 (404)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~------  210 (404)
                      ++.....+......+..+......|+....|+.....   ...++++........ .+|+           ...      
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~---~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~  436 (623)
T KOG1238|consen  360 GFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG---VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRK  436 (623)
T ss_pred             eeeecCCCccccccccccchHHHHHHHcCCCCcccCc---ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhh
Confidence            7666555543333344444556677777777633211   112333332211100 0110           000      


Q ss_pred             -ChHHHHHHHhhhccCCCCCCCcceeeeeecccccceEEEeccCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHHHccc
Q 015588          211 -TPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESK  289 (404)
Q Consensus       211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~l~s~dp~~~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~  289 (404)
                       ..++++..+....     ....+.+++.+++|.|||+++|+|+||.+.|+|++||+++|+|++.+++|++.+.++.+++
T Consensus       437 ~~~~~y~~~~~~~~-----~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~  511 (623)
T KOG1238|consen  437 ALGEIYQALFGELT-----NSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSK  511 (623)
T ss_pred             hcchHHHHhhhhhh-----cCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCH
Confidence             0011111111110     0112456778899999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccC--chhhhhccccCCCCCCCCCCCCChHHHHHHHHhhcccccccccccCCC------ceecCCCeeeeccC
Q 015588          290 SFSKFKYESM--SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDA  361 (404)
Q Consensus       290 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~i~~~~~~~~H~~GTcrMG------~VVD~~lrV~Gv~n  361 (404)
                      +|+++.....  +.++|...           ...+|++|+||+|..+.|.||++|||+||      +|||+++|||||+|
T Consensus       512 af~~~~~r~~~~~~~~c~~~-----------~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~  580 (623)
T KOG1238|consen  512 AFQRFGARLWKKPVPGCDLL-----------AFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRG  580 (623)
T ss_pred             HHHHhcchhccccCCCcccc-----------cCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccC
Confidence            9999886532  23333211           24789999999999999999999999999      89999999999999


Q ss_pred             ceEeeccccCCCCCCChHHHHHHHHHHHHHHHHhhhhcccCC
Q 015588          362 LRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASNDS  403 (404)
Q Consensus       362 LrVvDaSv~P~~~~~np~~t~~aiaer~A~~ii~~~~~~~~~  403 (404)
                      ||||||||||.+|++||++|++|||||+|+.|++++....++
T Consensus       581 LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~~  622 (623)
T KOG1238|consen  581 LRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKDG  622 (623)
T ss_pred             ceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999999999999999999999887666665554443

>PLN02785 Protein HOTHEAD Back     alignment and domain information
>TIGR01810 betA choline dehydrogenase Back     alignment and domain information
>PRK02106 choline dehydrogenase; Validated Back     alignment and domain information
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02462 pyranose_ox pyranose oxidase Back     alignment and domain information
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] Back     alignment and domain information
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] Back     alignment and domain information
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed Back     alignment and domain information
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional Back     alignment and domain information
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed Back     alignment and domain information
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed Back     alignment and domain information
>PRK12839 hypothetical protein; Provisional Back     alignment and domain information
>PRK07121 hypothetical protein; Validated Back     alignment and domain information
>PRK08274 tricarballylate dehydrogenase; Validated Back     alignment and domain information
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed Back     alignment and domain information
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] Back     alignment and domain information
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family Back     alignment and domain information
>PRK13977 myosin-cross-reactive antigen; Provisional Back     alignment and domain information
>PRK12843 putative FAD-binding dehydrogenase; Reviewed Back     alignment and domain information
>PRK06134 putative FAD-binding dehydrogenase; Reviewed Back     alignment and domain information
>TIGR01813 flavo_cyto_c flavocytochrome c Back     alignment and domain information
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup Back     alignment and domain information
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E Back     alignment and domain information
>PRK06175 L-aspartate oxidase; Provisional Back     alignment and domain information
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional Back     alignment and domain information
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle Back     alignment and domain information
>PRK12842 putative succinate dehydrogenase; Reviewed Back     alignment and domain information
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit Back     alignment and domain information
>PTZ00306 NADH-dependent fumarate reductase; Provisional Back     alignment and domain information
>PRK08275 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK12834 putative FAD-binding dehydrogenase; Reviewed Back     alignment and domain information
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>PRK06481 fumarate reductase flavoprotein subunit; Validated Back     alignment and domain information
>PLN02815 L-aspartate oxidase Back     alignment and domain information
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism] Back     alignment and domain information
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>PRK09077 L-aspartate oxidase; Provisional Back     alignment and domain information
>PRK07395 L-aspartate oxidase; Provisional Back     alignment and domain information
>PRK08626 fumarate reductase flavoprotein subunit; Provisional Back     alignment and domain information
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>PRK08071 L-aspartate oxidase; Provisional Back     alignment and domain information
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup Back     alignment and domain information
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit Back     alignment and domain information
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>PRK09231 fumarate reductase flavoprotein subunit; Validated Back     alignment and domain information
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit Back     alignment and domain information
>PLN02464 glycerol-3-phosphate dehydrogenase Back     alignment and domain information
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional Back     alignment and domain information
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit Back     alignment and domain information
>PRK06854 adenylylsulfate reductase subunit alpha; Validated Back     alignment and domain information
>PRK07512 L-aspartate oxidase; Provisional Back     alignment and domain information
>TIGR00551 nadB L-aspartate oxidase Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed Back     alignment and domain information
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit Back     alignment and domain information
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A Back     alignment and domain information
>PRK07804 L-aspartate oxidase; Provisional Back     alignment and domain information
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase Back     alignment and domain information
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
1ju2_A536 Crystal Structure Of The Hydroxynitrile Lyase From 3e-66
3gdn_A521 Almond Hydroxynitrile Lyase In Complex With Benzald 4e-66
3red_A521 3.0 A Structure Of The Prunus Mume Hydroxynitrile L 3e-65
3nne_A546 Crystal Structure Of Choline Oxidase S101a Mutant L 7e-14
2jbv_A546 Crystal Structure Of Choline Oxidase Reveals Insigh 8e-14
3ljp_A546 Crystal Structure Of Choline Oxidase V464a Mutant L 2e-13
3fim_B566 Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu 6e-08
3q9t_A577 Crystal Structure Analysis Of Formate Oxidase Lengt 2e-04
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536 Back     alignment and structure 
Iteration: 1

 Score =  248 bits (634), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 217/409 (53%), Gaps = 48/409 (11%)
Query: 2   RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
           + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  G RH A +LL   N + L +
Sbjct: 152 QSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRV 211
Query: 62  LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121
            +HASV K++F         A GV++RD+ G  H+A++++  K E+IVSAG +G+PQLL+
Sbjct: 212 GVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLL 267
Query: 122 LSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 173
           LSG        + NI VVL  P VGQ + DNP N I +  P P+E +++ V+GI+    +
Sbjct: 268 LSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--DF 325
Query: 174 IEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
            + +    F+    +   +G F           P    P            L +  F   
Sbjct: 326 YQCS----FSSLPFTTPPFGFF-----------PSSSYP------------LPNSTF--A 356
Query: 234 FILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXX 292
               KV GP+S G L L+ + N   +P+V FNY+    DL  CV G              
Sbjct: 357 HFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALK 416
Query: 293 XXXYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
               E +      N+        LP+      + E FCR++V + WHYHGGC VGKV+D 
Sbjct: 417 PYKVEDLPGVEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDG 472
Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 401
           D++V G++ALRV+DGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct: 473 DFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521 Back     alignment and structure
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521 Back     alignment and structure
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546 Back     alignment and structure
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546 Back     alignment and structure
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546 Back     alignment and structure
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566 Back     alignment and structure
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query404
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 1e-134
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 2e-44
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 2e-43
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 8e-43
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 1e-40
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 1e-39
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 5e-36
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 6e-20
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 5e-18
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 6e-17
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 8e-11
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 2e-04
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 7e-10
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536 Back     alignment and structure
 Score =  394 bits (1015), Expect = e-134
 Identities = 150/409 (36%), Positives = 223/409 (54%), Gaps = 48/409 (11%)

Query: 2   RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTL 61
           + WQS  +   +E GV P +GF+ DH  GT+I G+ FD  G RH A +LL   N + L +
Sbjct: 152 QSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRV 211

Query: 62  LLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 121
            +HASV K++F         A GV++RD+ G  H+A+++   K E+IVSAG +G+PQLL+
Sbjct: 212 GVHASVEKIIFSNAPGLT--ATGVIYRDSNGTPHQAFVR--SKGEVIVSAGTIGTPQLLL 267

Query: 122 LSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 173
           LSG        + NI VVL  P VGQ + DNP N I +  P P+E +++ V+GI+    +
Sbjct: 268 LSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGIS--NDF 325

Query: 174 IEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGG 233
            + +    F+    +   +G F           P    P               P     
Sbjct: 326 YQCS----FSSLPFTTPPFGFF-----------PSSSYP--------------LPNSTFA 356

Query: 234 FILEKVMGPVSTGHLELRTR-NPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFS 292
               KV GP+S G L L++  N   +P+V FNY+    DL  CV G+  I +++ + +  
Sbjct: 357 HFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALK 416

Query: 293 KFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDH 352
            +K E +      N+        LP+      + E FCR++V + WHYHGGC VGKV+D 
Sbjct: 417 PYKVEDLPGVEGFNILGIP----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDG 472

Query: 353 DYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 401
           D++V G++ALRV+DGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct: 473 DFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587 Back     alignment and structure
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583 Back     alignment and structure
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566 Back     alignment and structure
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577 Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526 Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546 Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 100.0
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 100.0
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 100.0
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 100.0
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 100.0
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 100.0
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 100.0
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 100.0
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 100.0
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 100.0
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 100.0
4at0_A510 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore 96.77
1d4d_A572 Flavocytochrome C fumarate reductase; oxidoreducta 94.83
1y0p_A571 Fumarate reductase flavoprotein subunit; flavocyto 94.07
1qo8_A566 Flavocytochrome C3 fumarate reductase; oxidoreduct 93.92
2h88_A 621 Succinate dehydrogenase flavoprotein subunit; comp 93.66
2wdq_A588 Succinate dehydrogenase flavoprotein subunit; succ 93.05
2rgh_A571 Alpha-glycerophosphate oxidase; flavoprotein oxida 92.77
1kf6_A 602 Fumarate reductase flavoprotein; respiration, fuma 92.25
2bs2_A 660 Quinol-fumarate reductase flavoprotein subunit A; 92.03
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 91.43
1chu_A540 Protein (L-aspartate oxidase); flavoenzyme, NAD bi 91.26
3da1_A561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 91.05
3gyx_A 662 Adenylylsulfate reductase; oxidoreductase; HET: FA 89.85
3dme_A369 Conserved exported protein; structural genomics, P 89.7
1jnr_A 643 Adenylylsulfate reductase; oxidoreductase; HET: FA 88.85
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 87.79
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 85.95
3e1t_A512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 85.09
2qcu_A501 Aerobic glycerol-3-phosphate dehydrogenase; glycer 84.45
1rp0_A284 ARA6, thiazole biosynthetic enzyme; protein ligand 83.81
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 82.87
2i0z_A447 NAD(FAD)-utilizing dehydrogenases; structural geno 82.48
3atr_A453 Conserved archaeal protein; saturating double bond 82.28
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Back     alignment and structure
Probab=100.00  E-value=3.3e-70  Score=561.22  Aligned_cols=367  Identities=22%  Similarity=0.345  Sum_probs=267.8

Q ss_pred             chhHHHHHHHHHHc--CCcCCCCCcccCCCceeeEEEEEC---CCCceecHHH-hhh-hcCCCCeEEecCcEEEEEEEec
Q 015588            2 RQWQSAVRDGLVEV--GVLPYNGFTYDHMYGTKIGGTIFD---QNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRI   74 (404)
Q Consensus         2 ~p~~~~~~~a~~~~--G~~~~~~~~~d~~~g~~~g~~~~~---~~g~R~s~~~-~l~-~~~r~nl~v~~~a~V~rv~~~~   74 (404)
                      .|+...|.++++++  |+ +++   .|.+++...|.+.++   .+|+|++++. ||. ...|+||+|+++++|+||+|+.
T Consensus       163 ~~~~~~~~~a~~~~~~G~-~~~---~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~  238 (566)
T 3fim_B          163 TPLDDRVLATTQEQSEEF-FFN---PDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSG  238 (566)
T ss_dssp             CTHHHHHHHHHHHTHHHH-CBC---SCGGGSCCCEEEECCBSEETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECCE
T ss_pred             CHHHHHHHHHHHHHhcCC-Ccc---CCCCCCCcceEEeeeeecCCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEeec
Confidence            46788999999999  97 665   355566666665432   4899999987 875 6689999999999999999982


Q ss_pred             CCCCCCeEEEEEEEeCCC-ceeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCcccCCcCcCCC
Q 015588           75 KGKARPVAHGVVFRDATG-AKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP  145 (404)
Q Consensus        75 ~~~~~~~a~GV~~~~~~g-~~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p~VG~nl~DH~  145 (404)
                      ...+..+|+||+|.+.+| +.++++    |+||||||||+|+||||||+||        ++||++++|||+||+|||||+
T Consensus       239 ~~~g~~rA~GVe~~~~~g~~~~~v~----A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH~  314 (566)
T 3fim_B          239 TTNGLPAFRCVEYAEQEGAPTTTVC----AKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHL  314 (566)
T ss_dssp             EETTEEECCEEEEESSTTSCCEEEE----EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCE
T ss_pred             CCCCCCEEEEEEEEECCCceEEEEE----eeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcCc
Confidence            100114899999987546 777775    7899999999999999999999        899999999999999999999


Q ss_pred             CceeeeeCCCCccch-h-h-hhhccchhhhhHHhhccccccCCCCCCCcccccCcccC--ccccCC---CCCCChHHHHH
Q 015588          146 MNAIFVPSPVPVEVS-L-I-QVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG--QLSKVP---PKQRTPEAIAE  217 (404)
Q Consensus       146 ~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~  217 (404)
                      .+.+.+..+.+.... . . .........+|...+.|+ +....  ....+++.....  .+....   .....+++. -
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-l~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~pd~~-~  390 (566)
T 3fim_B          315 LLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGP-LTALI--ANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWE-T  390 (566)
T ss_dssp             EECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSG-GGCCS--CSEEEEECCCTTCGGGGTSCCCSSSTTSCSEE-E
T ss_pred             cceEEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCC-cccCh--hhheeeeccccchhhhhhhccccccCCCCCEE-E
Confidence            887777665432211 0 0 000112234566667776 33110  011122211000  000000   000011100 0


Q ss_pred             HHhhh--c-cC-CCCCCCcceeeeeecccccceEEEeccCCCCCCCeeeCCCCCChhhHHHHHHHHHHHHHHHccccccc
Q 015588          218 AIENM--K-AL-DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSK  293 (404)
Q Consensus       218 ~~~~~--~-~~-~~~~~~~~~~~~~~~~P~srG~V~l~s~dp~~~P~I~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~  293 (404)
                      ++...  . .. ........++...+++|+|||+|+|+|+||++.|+|++||+++|.|++.|++++|++++|+++++++.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~  470 (566)
T 3fim_B          391 IFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWAD  470 (566)
T ss_dssp             EEESSCCCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGTT
T ss_pred             EecccchhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHhCcccCC
Confidence            00000  0 00 00011123566788999999999999999999999999999999999999999999999999999988


Q ss_pred             cccccCchhhhhccccCCCCCCCC--CCCCChHHHHHHHHhhcccccccccccCCC------ceecCCCeeeeccCceEe
Q 015588          294 FKYESMSVPILVNMTASAPVNLLP--RHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVI  365 (404)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~d~~~~~~i~~~~~~~~H~~GTcrMG------~VVD~~lrV~Gv~nLrVv  365 (404)
                      +...+.                .|  ....+|++|++|+|+...+.||++||||||      +|||++|||||++|||||
T Consensus       471 ~~~~~~----------------~P~~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVv  534 (566)
T 3fim_B          471 FVIRPF----------------DPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIV  534 (566)
T ss_dssp             TEEEES----------------SGGGSCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEEC
T ss_pred             cccccc----------------CCCcccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEc
Confidence            764321                12  135789999999999999999999999998      799999999999999999


Q ss_pred             eccccCCCCCCChHHHHHHHHHHHHHHHHhh
Q 015588          366 DGSTFYYSPGTNPQATVMMLGRYMGVRILSE  396 (404)
Q Consensus       366 DaSv~P~~~~~np~~t~~aiaer~A~~ii~~  396 (404)
                      ||||||+++++||++|+||||||+|+.|+++
T Consensus       535 DaSv~P~~~~~n~~~~~~~iaekaAd~I~~~  565 (566)
T 3fim_B          535 DGSILPFAPNAHTQGPIYLVGKQGADLIKAD  565 (566)
T ss_dssp             SGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999998877654
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Back     alignment and structure
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Back     alignment and structure
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Back     alignment and structure
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Back     alignment and structure
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Back     alignment and structure
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Back     alignment and structure
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Back     alignment and structure
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Back     alignment and structure
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Back     alignment and structure
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Back     alignment and structure
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Back     alignment and structure
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 404
d1ju2a2170 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond 2e-41
d1ju2a1351 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { 3e-19
d1ju2a1351 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase { 1e-10
d1cf3a1385 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper 1e-13
d1cf3a1385 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper 6e-05
d1gpea1391 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic 2e-09
d1gpea1391 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic 1e-04
d1kdga1360 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain 2e-08
d1kdga1360 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain 2e-06
d1cf3a2196 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus 9e-08
d3coxa1370 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of 2e-07
d1gpea2196 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium 5e-07
d1n4wa1367 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of 6e-07
d2f5va1379 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W 2e-06
d1kdga2181 d.16.1.1 (A:513-693) Flavoprotein domain of flavoc 2e-04
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  142 bits (358), Expect = 2e-41
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 36/204 (17%)

Query: 141 MSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIG 200
           + DNP N I +  P P+E +++ V+GI+    Y  + S   F            +     
Sbjct: 2   LHDNPRNFINILPPNPIEPTIVTVLGISN-DFYQCSFSSLPFTTPPFGFFPSSSYPL--- 57

Query: 201 QLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNP 259
                                      P         KV GP+S G L L+ + N   +P
Sbjct: 58  ---------------------------PNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSP 90

Query: 260 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 319
           +V FNY+    DL  CV G+  I +++ + +   +K E +      N+        LP+ 
Sbjct: 91  NVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP----LPKD 146

Query: 320 SNASTSLEQFCRDTVMTIWHYHGG 343
                + E FCR++V + WHYHGG
Sbjct: 147 QTDDAAFETFCRESVASYWHYHGG 170
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 Back     information, alignment and structure
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 Back     information, alignment and structure
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 Back     information, alignment and structure
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 Back     information, alignment and structure
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196 Back     information, alignment and structure
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 Back     information, alignment and structure
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196 Back     information, alignment and structure
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query404
d1gpea1391 Glucose oxidase {Penicillium amagasakiense [TaxId: 100.0
d1cf3a1385 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.98
d1kdga1360 Flavoprotein domain of flavocytochrome cellobiose 99.95
d1ju2a1351 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 99.93
d2f5va1379 Pyranose 2-oxidase {White-rot fungus (Peniophora s 99.92
d1gpea2196 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.76
d1cf3a2196 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.76
d1n4wa1367 Cholesterol oxidase of GMC family {Streptomyces sp 99.76
d1kdga2181 Flavoprotein domain of flavocytochrome cellobiose 99.75
d1ju2a2170 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 99.74
d3coxa1370 Cholesterol oxidase of GMC family {Brevibacterium 99.73
d1y0pa2308 Flavocytochrome c3 (respiratory fumarate reductase 97.13
d1d4ca2322 Flavocytochrome c3 (respiratory fumarate reductase 96.86
d1qo8a2317 Flavocytochrome c3 (respiratory fumarate reductase 96.7
d1kf6a2311 Fumarate reductase {Escherichia coli [TaxId: 562]} 96.0
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 94.7
d2f5va2198 Pyranose 2-oxidase {White-rot fungus (Peniophora s 93.77
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 93.57
d2bs2a2336 Fumarate reductase {Wolinella succinogenes [TaxId: 93.42
d1chua2305 L-aspartate oxidase {Escherichia coli [TaxId: 562] 92.58
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 92.26
d2cula1230 GidA-related protein TTHA1897 {Thermus thermophilu 89.45
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 88.72
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 88.16
d1mo9a2121 NADH-dependent 2-ketopropyl coenzyme M oxidoreduct 85.27
d1fl2a2126 Alkyl hydroperoxide reductase subunit F (AhpF), C- 81.13
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=7.7e-33  Score=270.69  Aligned_cols=134  Identities=31%  Similarity=0.440  Sum_probs=105.0

Q ss_pred             chhHHHHHHHHHHcCCcCCCCCcccCCCceeeEEEE----ECCCCceecHHH-hh-hhcCCCCeEEecCcEEEEEEEecC
Q 015588            2 RQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTI----FDQNGQRHTAAD-LL-EYANPSGLTLLLHASVHKVLFRIK   75 (404)
Q Consensus         2 ~p~~~~~~~a~~~~G~~~~~~~~~d~~~g~~~g~~~----~~~~g~R~s~~~-~l-~~~~r~nl~v~~~a~V~rv~~~~~   75 (404)
                      .|+.+.|.++++++|+ +.+.   +.+.+...+.+.    .+.++.|++++. ++ +...|+||+|+++++|+||+|+.+
T Consensus       187 ~p~~~~~~~a~~~~G~-~~~~---~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i~t~a~V~rIl~~~~  262 (391)
T d1gpea1         187 SPIMKALMNTVSALGV-PVQQ---DFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQT  262 (391)
T ss_dssp             CTHHHHHHHHHHHTTC-CBSC---CTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHhcCC-ceee---ccccCcccccccccceeeccccccchhhhccCccccchhhhhhccceeeEEeeeCC
Confidence            3678899999999998 4432   334444433322    234667777765 54 467899999999999999999864


Q ss_pred             CCCCCeEEEEEEEeCCCceeEEEeecCCCceEEEecCCcCchHHHHhhc--------CCCceeeecCc-ccCCcCcCC
Q 015588           76 GKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQP-LVGQGMSDN  144 (404)
Q Consensus        76 ~~~~~~a~GV~~~~~~g~~~~v~~~~~a~keVILsAGai~TP~LLl~SG--------~~gI~~~~d~p-~VG~nl~DH  144 (404)
                      . ++.||+||+|.+.+|..++++    |+||||||||||+||+|||+||        ++||++++||| |||+|||||
T Consensus       263 ~-~g~ra~GV~~~~~~g~~~~v~----A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~v~dlP~Gvg~nl~dh  335 (391)
T d1gpea1         263 A-SGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSRE  335 (391)
T ss_dssp             T-TEEEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCTCBSCGG
T ss_pred             C-CCceEEeeEEecCCCeEEEEE----eCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCCEEEECCcccccccccC
Confidence            3 335899999987667777776    7899999999999999999999        88999999998 799998888
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Back     information, alignment and structure
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Back     information, alignment and structure
>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Back     information, alignment and structure
>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure