Citrus Sinensis ID: 015643

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400---
Protein Sequence
MMTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEETIALNLKIKDEEVEEAVIAEATREAIGCNFDYQSPVTGDDTAGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMGSANDALQYH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccccHHHccccEEEEEccccHHHHHHccHHHHcHHHHHHHcccEEEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcEEEHHHHHHHHccccccccEEEEccccHHHHHHHHEcc
Coil and Loop (DISEMBL)
mmtgekrtanamggktaracdgcLRKRARWycvaddaflcqgcdasVHSANQLASRHERVRLEtasscnnnnklinehtdkdtvpvwhqgftrkartprhnnnKAMLMQQAKaneplvpeigcedgslqaddqvideqllyqvpvfdpfeavepdenlivdgyngqdgtgdlddlhgflpsdlDLAEFAADVESllgggggaldedscdvkefwtlldcKEEETIALNLKIKDEEVEEAVIAEATREAigcnfdyqspvtgddtaglmsteckpklmrnvslKLNYDAVITAWasqgcpwtagsrpeinlnhcwpyctglcckgvhhhtcgggavlrgchlgagggreaRVSRYREKRRTRLFSKKIRYEVRKLNaekrprmkgrfvkrtsfmgsandalqyh
Flexible Loop (DISEMBL)
mmtgekrtanamggktaracDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLetasscnnnnklinehtdkdtvpvWHQGFtrkartprhnnNKAMLMQQAKANEPLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEETIalnlkikdeEVEEAVIAEATreaigcnfdyqspvTGDDTAGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHlgagggrearvsryrekrrtrlfskkiryevrklnaekrprmkgrfvkrtsfmgsandalqyh
Low Complexity Region (SEG)
MMTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAADVESllgggggALDEDSCDVKEFWTLLDCKEEETIALNLKIKDeeveeaviaeatreaiGCNFDYQSPVTGDDTAGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMGSANDALQYH
Disordered region (IsUnstruct)
****************ARACDGCLRKRARWYCVADDAFLCQGCDASVHS*********************************TVPVWHQGF*****************************IGC***SLQADDQVIDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEF*******************CDVKEFWTLLDCKEEETIALNLKIKDEEVEEAVIAEATREAIGCNFDYQSPVTGDDTAGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLGAGGGREARV*********RLFSKKIRYEV********************************
Disordered Region (DISOPRED)
******************ACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSCNNNNKLINEHTDKDTVPVWHQ***********************************************EQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDV*************************************AIGC**************************************************************************************************************LFSKKIRYEVRKLNAEKRPRMKGRFV****************
Disordered Region (DISEMBL)
**************KTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEETIALNLKIKDEEVEEAVIAEATREAIGCNFDYQSPVTGDDTAGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLGA***********REKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMGSANDALQYH
Disordered Region (DISPRO)
****************ARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRH*NNKAMLMQQAKANEPLVPEIGCE**********IDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEE**ALNLK**D*********************************************NVSLKLNYDAVITAWASQGCPWTAG*R****************************************GREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMGSANDALQYH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEETIALNLKIKDEEVEEAVIAEATREAIGCNFDYQSPVTGDDTAGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMGSANDALQYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	403	2.2.26 [Sep-21-2011]
Q8RWD0	417	Zinc finger protein CONST	yes	no	0.903	0.872	0.441	7e-77
Q8LG76	406	Zinc finger protein CONST	no	no	0.888	0.881	0.421	3e-74
Q9C9A9	392	Zinc finger protein CONST	no	no	0.895	0.920	0.425	9e-67
Q9M9B3	319	Zinc finger protein CONST	no	no	0.741	0.937	0.326	7e-40
Q9LU68	435	Protein CHLOROPLAST IMPOR	no	no	0.220	0.204	0.462	3e-17
Q9FHH8	355	Zinc finger protein CONST	no	no	0.131	0.149	0.622	1e-10
Q940T9	362	Zinc finger protein CONST	no	no	0.104	0.116	0.704	6e-10
Q9FDX8	395	Zinc finger protein HD1 O	no	no	0.109	0.111	0.681	6e-10
O50055	355	Zinc finger protein CONST	no	no	0.131	0.149	0.592	1e-09
Q9SK53	294	Zinc finger protein CONST	no	no	0.104	0.142	0.704	1e-09

>sp|Q8RWD0|COL16_ARATH Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2

 Score =  288 bits (736), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 186/421 (44%), Positives = 247/421 (58%), Gaps = 57/421 (13%)

Query: 6   KRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65
           K  ANA+G KTARACD C+++RARWYC ADDAFLCQ CD+ VHSAN LA RHERVRL+TA
Sbjct: 3   KSLANAVGAKTARACDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRLKTA 62

Query: 66  SSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIGCED 125
           S     +   +  +    V  WH GFTRKARTPR +  K      +     LVP+I  ED
Sbjct: 63  SPAVVKHSNHSSASPPHEVATWHHGFTRKARTPRGSGKK----NNSSIFHDLVPDISIED 118

Query: 126 GSLQADDQVIDEQLLYQVPVFDPF-------EAVEP--DENLIVDGYNGQDGTGDLDD-L 175
              Q D+  ++EQL+ QVPV DP        + VEP  +  +I  G   ++   + +  L
Sbjct: 119 ---QTDNYELEEQLICQVPVLDPLVSEQFLNDVVEPKIEFPMIRSGLMIEEEEDNAESCL 175

Query: 176 HGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEF-----------WTLLDCKEEET 224
           +GF P+D++L EFAADVE+LLG G   LD +S  ++E               ++ + EE 
Sbjct: 176 NGFFPTDMELEEFAADVETLLGRG---LDTESYAMEELGLSNSEMFKIEKDEIEEEVEEI 232

Query: 225 IALNLKIKDE---EVEEAVIAEATREAIGCNFDYQSP--------VTGDDTAGLMSTECK 273
            A+++ I D+   +V+  V  E +       FDY+S         +   +++G    + K
Sbjct: 233 KAMSMDIFDDDRKDVDGTVPFELS-------FDYESSHKTSEEEVMKNVESSGECVVKVK 285

Query: 274 PKLMRNV-SLKLNYDAVITAWASQGCPWTAGSRPEINLNHC-WPYCTGLCCKGVHHHTCG 331
            +  +NV  L+LNYD+VI+ W  QG PW++G  PE +++   WP  + +   G   H   
Sbjct: 286 EEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSMVENGGESTHQ-- 343

Query: 332 GGAVLRGCHLGAG---GGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 388
               + GC   +G   GGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK
Sbjct: 344 -KQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 402

Query: 389 R 389
           R
Sbjct: 403 R 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG76|COL6_ARATH Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2

 Score =  279 bits (713), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 181/429 (42%), Positives = 235/429 (54%), Gaps = 71/429 (16%)

Query: 6   KRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65
           K  A+A+GGKTARACD C+++RARWYC ADDAFLC  CD SVHSAN LA RHERVRL++A
Sbjct: 3   KSLASAVGGKTARACDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERVRLKSA 62

Query: 66  SSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIGCED 125
           S+          H        WHQGFTRKARTPR       ++        LVPE+  ED
Sbjct: 63  SAGKYR------HASPPHQATWHQGFTRKARTPRGGKKSHTMVFH-----DLVPEMSTED 111

Query: 126 GSLQADDQVIDEQLLYQVPVFDPF-------EAVEPDENLIVDGYNGQDGTGDLDD---- 174
              QA+   ++EQL+++VPV +         +++E      +   + +    + DD    
Sbjct: 112 ---QAESYEVEEQLIFEVPVMNSMVEEQCFNQSLEKQNEFPMMPLSFKSSDEEDDDNAES 168

Query: 175 -LHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEETIALNLKIKD 233
            L+G  P+D++LA+F ADVE+LLGGG           +EF ++ +    E + +  +  +
Sbjct: 169 CLNGLFPTDMELAQFTADVETLLGGGD----------REFHSIEELGLGEMLKIEKEEVE 218

Query: 234 EEVEEAVIAEATREA-----IGCNFDYQSPVTGDDTAGLMSTECKPKLMRNV-------- 280
           EE           E         +FDY+   T   T      + K  +M+NV        
Sbjct: 219 EEGVVTREVHDQDEGDETSPFEISFDYE--YTHKTTFDEGEEDEKEDVMKNVMEMGVNEM 276

Query: 281 -------------SLKLNYDAVITAWASQGCPWTAGSRPEINLNH-CWP-YCTGLCCKGV 325
                         L+L+Y++VI+ W  QG PWTA    EI+L+  C+P +  G      
Sbjct: 277 SGGIKEEKKEKALMLRLDYESVISTWGGQGIPWTARVPSEIDLDMVCFPTHTMGESGAEA 336

Query: 326 HHHTCGGGAVLRGCHLG-AG-GGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMK 383
           HHH    G    G HLG AG GGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMK
Sbjct: 337 HHHNHFRGL---GLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMK 393

Query: 384 GRFVKRTSF 392
           GRFVKR+S 
Sbjct: 394 GRFVKRSSI 402

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9A9|COL7_ARATH Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1

 Score =  254 bits (649), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 176/414 (42%), Positives = 219/414 (52%), Gaps = 53/414 (12%)

Query: 5   EKRTANAMGGK-TARACDGCL-RKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL 62
           E RTA+  G K  AR CD C+ R RA WYC ADDAFLCQ CDAS+HSAN LA RHERVRL
Sbjct: 6   ESRTASVTGEKMAARGCDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKRHERVRL 65

Query: 63  ETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIG 122
           +++S     +K         T  VW++GF RKARTPR  +     + Q ++N+PLVPE+G
Sbjct: 66  QSSSPTETADK---------TTSVWYEGFRRKARTPRSKSCAFEKLLQIESNDPLVPELG 116

Query: 123 C-EDGSLQADDQV--IDEQLLYQVPVFDPFE----------AVEPDE--NLIVDGYNGQD 167
             ED    +   V   +E L   VPVFDPF            + PDE  N   +G  G+ 
Sbjct: 117 GDEDDGFFSFSSVEETEESLNCCVPVFDPFSDMLIDDINGFCLVPDEVNNTTTNGELGEV 176

Query: 168 GTGDLDD--LHGFLPSDLDLAEFAADVESLLGGGGGALDEDSC-DVKEFWTLLDCKEEET 224
               +DD    GF+P D+DL +   DVESLL       +E  C   KE   +   KEE  
Sbjct: 177 EKAIMDDEGFMGFVPLDMDLEDLTMDVESLLE------EEQLCLGFKEPNDVGVIKEENK 230

Query: 225 IALNLKIKDEEVEEAVIAEATREAIGCNFDYQSPVTGDDTAGLMSTECKPKLMRNVSLKL 284
           +   +  KD  ++     +   E   C           D       + K  L     L+L
Sbjct: 231 VGFEINCKD--LKRVKDEDEEEEEAKCE---NGGSKDSDREASNDKDRKTSLF----LRL 281

Query: 285 NYDAVITAWASQGCPWTAGSRPEINL--NHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLG 342
           +Y AVI+AW + G PW  G +PE  L  N C P+  G    G        G+V R     
Sbjct: 282 DYGAVISAWDNHGSPWKTGIKPECMLGGNTCLPHVVG----GYEKLMSSDGSVTRQQGRD 337

Query: 343 AGGG---REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFM 393
            GG    REARV RY+EKRRTRLFSKKIRYEVRKLNAE+RPR+KGRFVKRTS +
Sbjct: 338 GGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTSLL 391

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9B3|COL8_ARATH Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana GN=COL8 PE=2 SV=2

 Score =  165 bits (417), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 172/386 (44%), Gaps = 87/386 (22%)

Query: 15  KTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSCNNNNKL 74
           K  RAC+ CL K A WYC +DDAFLC  CD SVHSAN +A++HERV       C   N++
Sbjct: 16  KQPRACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERV-------CLRTNEI 68

Query: 75  INEHTDKDTV-PVWHQGFTRKARTPRHNNNKA---MLMQQAKANEPLVPEIGCEDGSLQA 130
            N+     T+  VWH GF RKARTPR    K     +  + +  +P VPEIG E   +  
Sbjct: 69  SNDVRGGTTLTSVWHSGFRRKARTPRSRYEKKPQQKIDDERRREDPRVPEIGGE--VMFF 126

Query: 131 DDQVIDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAA 190
             +  D+ +   VP F+ F  +       +  +NG + T              +  E A 
Sbjct: 127 IPEANDDDMTSLVPEFEGFTEM----GFFLSNHNGTEETT----------KQFNFEEEAD 172

Query: 191 DVESLLGGGGGALDEDSCDVKEFWTLLDCKEEETIALNLKIKDEEVEEAVIAEATREAIG 250
            +E L   G      D  +      L+ CK++    + +  K EE+E+            
Sbjct: 173 TMEDLYYNGEEEDKTDGAEACPGQYLMSCKKDYDNVITVSEKTEEIEDC----------- 221

Query: 251 CNFDYQSPVTGDDTAGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINL 310
               Y++                     N   +LNY+ VI AW  Q  P           
Sbjct: 222 ----YEN---------------------NARHRLNYENVIAAWDKQESP----------- 245

Query: 311 NHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLG-AGGGREARVSRYREKRRTRLFSKKIRY 369
                       + V ++T     V  G         REARV RYR+KR+ RLF KKIRY
Sbjct: 246 ------------RDVKNNTSSFQLVPPGIEEKRVRSEREARVWRYRDKRKNRLFEKKIRY 293

Query: 370 EVRKLNAEKRPRMKGRFVKRTSFMGS 395
           EVRK+NA+KRPRMKGRFV+R+  + S
Sbjct: 294 EVRKVNADKRPRMKGRFVRRSLAIDS 319

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU68|CIA2_ARATH Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 62/108 (57%), Gaps = 19/108 (17%)

Query: 282 LKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHL 341
           LKL+YD V+ AW+ +  P+      EI  +        L    +                
Sbjct: 337 LKLDYDGVLEAWSDKTSPFPD----EIQGSEAVDVNARLAQIDL---------------F 377

Query: 342 GAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 389
           G  G REA V RY+EKRRTRLFSKKIRY+VRKLNA++RPRMKGRFV+R
Sbjct: 378 GDSGMREASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425

Responsible for specific up-regulation of the translocon genes TOC33 and TOC75 in leaves. Involved in the general chloroplast protein import pathway regulation, including protein import and protein translation efficiencies.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHH8|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 36/53 (67%)

Query: 338 GCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
           G H  +   REARV RYREKR+ R F K IRY  RK  AE RPR+KGRF KRT
Sbjct: 276 GDHQASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 33/44 (75%)

Query: 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
           REARV RYREKR+ R F K IRY  RK  AE RPR+KGRF KRT
Sbjct: 295 REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 338

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 34/44 (77%)

Query: 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
           REARV RYREK++ R F K IRYE RK  AE RPR+KGRF KR+
Sbjct: 326 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 369

Probable transcription factor involved in the regulation of flower development. Required for the promotion of flowering under short day (SD) conditions and the suppression of flowering under long day (LD) conditions. Regulates positively the floral activator HEADING DATE 3a (HD3A) under SD and negatively under LD conditions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 36/54 (66%)

Query: 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMGSANDAL 400
           REARV RYREK++ R F K IRY  RK  AEKRPR+KGRF K+      AN A 
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAF 339

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 33/44 (75%)

Query: 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
           REARV RYREKR+ R F K IRY  RK  AE RPR+KGRF KRT
Sbjct: 229 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 272

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
224130206	393	predicted protein [Populus trichocarpa]	0.908	0.931	0.535	1e-107
255585436	430	transcription factor, putative [Ricinus	0.937	0.879	0.530	1e-107
225423977	432	PREDICTED: zinc finger protein CONSTANS-	0.942	0.879	0.522	1e-104
225455924	410	PREDICTED: zinc finger protein CONSTANS-	0.920	0.904	0.531	2e-98
147809824	475	hypothetical protein VITISV_026326 [Viti	0.923	0.783	0.527	1e-97
224099369	408	predicted protein [Populus trichocarpa]	0.905	0.894	0.501	2e-95
118486554	444	unknown [Populus trichocarpa]	0.910	0.826	0.470	2e-93
224111684	447	predicted protein [Populus trichocarpa]	0.920	0.829	0.461	1e-91
255581649	468	conserved hypothetical protein [Ricinus	0.957	0.824	0.458	3e-89
356534367	419	PREDICTED: zinc finger protein CONSTANS-	0.910	0.875	0.460	2e-85

>gi|224130206|ref|XP_002328680.1| predicted protein [Populus trichocarpa] gi|222838856|gb|EEE77207.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/422 (53%), Positives = 279/422 (66%), Gaps = 56/422 (13%)

Query: 1   MMTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERV 60
           M++G K  ANAMGGKTARACD CLRKRARW+CVADDAFLCQ CDASVHSANQLASRH+RV
Sbjct: 1   MISGRK-AANAMGGKTARACDSCLRKRARWFCVADDAFLCQACDASVHSANQLASRHQRV 59

Query: 61  RLETASSCNNNNKLINEHTDKD-TVPVWHQGFTRKARTPRHNNNKAMLMQQAKANE---- 115
           RLETASS   ++ L   +TD+D + P WHQGFTRKARTPRHN+NK++L+QQ   ++    
Sbjct: 60  RLETASSYRISSSL---NTDQDYSPPAWHQGFTRKARTPRHNSNKSLLVQQLLKDDREKV 116

Query: 116 ----PLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEA------VEPDENLIVDGYNG 165
               PLVPEIG E+    A D+  D+QLL +VPVFDPF A         DEN++V+ Y G
Sbjct: 117 LNPLPLVPEIGSEEEPNMAPDENEDDQLLCRVPVFDPFAAKMCDIVTSEDENMVVEVY-G 175

Query: 166 QDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSC---------DVKEFWTL 216
           Q+G   LD+L GFLPSD+DLAEFAAD   LL    G  +   C         D +E  T+
Sbjct: 176 QEGACGLDNLPGFLPSDMDLAEFAAD---LLDCSKGEDEGQFCFADKVVKMKDEQEMETI 232

Query: 217 LDCKEEETIALNLK-IKDEEVEEAVIAEATREAIGCNFDYQSPVTGDDTAGLMSTECKPK 275
           +DC  ++   +  + + DEEVEE  +     E                   +M++    +
Sbjct: 233 IDCHFDQDFNMARESLLDEEVEEKKVPVPETE-------------------MMNSTGYKE 273

Query: 276 LMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAV 335
           + RNVSL+L+Y++VI AWA+QGCPWT GSRPE+N +  W    G C K V++   G G+ 
Sbjct: 274 MKRNVSLRLDYESVIIAWANQGCPWTTGSRPELNPDDSWTDSMGACPKDVNNPYGGLGSH 333

Query: 336 LRGCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMGS 395
            R    G  G REARV RY+EKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTS MG+
Sbjct: 334 TR----GGDGEREARVMRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSLMGT 389

Query: 396 AN 397
            +
Sbjct: 390 TD 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585436|ref|XP_002533412.1| transcription factor, putative [Ricinus communis] gi|223526741|gb|EEF28970.1| transcription factor, putative [Ricinus communis]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/439 (53%), Positives = 282/439 (64%), Gaps = 61/439 (13%)

Query: 2   MTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVR 61
           MT +++ ANA+ GKTARACDGC RKRARW+C ADDAFLCQ CD SVHSANQLASRHERVR
Sbjct: 1   MTNDRKAANALSGKTARACDGCSRKRARWFCAADDAFLCQACDDSVHSANQLASRHERVR 60

Query: 62  LETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKA----NEPL 117
           LETASS     K+       D+VP WHQGF RKARTPR+++NK  L  + K       PL
Sbjct: 61  LETASS-----KISGSRNTVDSVPAWHQGFIRKARTPRNSSNKQQLKDEDKVLVMNPLPL 115

Query: 118 VPEIGCED--GSLQADDQVIDEQLLYQVPVFDPF-------------EAVE-----PDEN 157
           VPEIG E+   S  AD+   D++LLY+VPVFDP+             E  E      + N
Sbjct: 116 VPEIGGEEEGNSTFADED--DDRLLYRVPVFDPYASELCTDDMVTCGEGTEITMGNEEGN 173

Query: 158 LIVDGYNGQDGT-GDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTL 216
           ++ DGYNGQ+GT  DLD L  F  SD+DLAEFAADVE+LLG     ++EDS D+++   L
Sbjct: 174 IVFDGYNGQEGTCDDLDILPEFFSSDMDLAEFAADVENLLG-----VNEDSPDIEDL-CL 227

Query: 217 LDCKEEE---------TIALNLKIKDEEVEEA---VIAEATREAIGCNFDYQSP-VTGDD 263
           L CKEEE            + +K+KDE+  EA         RE++  +F+Y+SP +T D+
Sbjct: 228 LHCKEEEDDQKCFFDDQDKVVMKVKDEQEVEACDHFDQAFERESLDWSFNYESPTITADE 287

Query: 264 T-------AGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPY 316
                     + S + K        L+LNY+ VI AWASQG PWT+GSRPE+N + CWP 
Sbjct: 288 VEEKKRVPVAINSQQKKETKSTASLLRLNYEDVINAWASQGSPWTSGSRPELNSDDCWPD 347

Query: 317 CTGLCCKGVHHHTCGGGAVLRGCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNA 376
           C  +C K  HHH  GG         G  G REARV RY+EKRRTRLFSKKIRYEVRKLNA
Sbjct: 348 CMDICLKDGHHHPYGGMGGH---TRGGNGAREARVLRYKEKRRTRLFSKKIRYEVRKLNA 404

Query: 377 EKRPRMKGRFVKRTSFMGS 395
           EKRPRMKGRFVKRTSFMG+
Sbjct: 405 EKRPRMKGRFVKRTSFMGN 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423977|ref|XP_002282578.1| PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera] gi|297737819|emb|CBI27020.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/440 (52%), Positives = 275/440 (62%), Gaps = 60/440 (13%)

Query: 2   MTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVR 61
           M  EK  ANA+GGKTARACD C+RKRAR+YC ADDAFLCQ CD SVHSAN LA RHERVR
Sbjct: 1   MISEKNVANAVGGKTARACDSCIRKRARFYCAADDAFLCQACDMSVHSANPLARRHERVR 60

Query: 62  LETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANE------ 115
           L+TAS      KL    + ++++P WHQGFTRKARTPRH   K       K++E      
Sbjct: 61  LKTASL-----KLPGADSLENSMPSWHQGFTRKARTPRH--GKPAAHPAFKSDELTRNPL 113

Query: 116 PLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEA-----VEPDENL--IVDGYNGQDG 168
           P VPEIG ++ S   DD   +EQLLY+VP+FDPF A        +E +  + +     D 
Sbjct: 114 PFVPEIGADETSY--DDN--EEQLLYRVPIFDPFVAELCASTNSNEAVTTVANDTETADV 169

Query: 169 TG------------DLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTL 216
           TG            D+D LHGFLPSD+DLAEFAADVESLLG G   LD +S  + E   L
Sbjct: 170 TGSETKALVAGRGHDVDSLHGFLPSDMDLAEFAADVESLLGKG---LDNESFGM-EGLGL 225

Query: 217 LDCKEEETIALNL-----KIKDEEVEEAVIA-------EATREAIGCNFDYQSPVTGDD- 263
           +DCKE+E++  +L     K+++EE    V+A       + TRE    NFDY SP T ++ 
Sbjct: 226 IDCKEKESVEYSLHSGRVKLEEEEDIGGVMACQADAEIDMTREPFELNFDYGSPATCEEE 285

Query: 264 ----TAGLMSTECK---PKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPY 316
                 G M    K   PK    + L+L+Y+A+ITAWASQG PWT G RPE++ + CWP 
Sbjct: 286 EEKVAVGAMDMNNKVDDPKKKNKILLRLDYEAIITAWASQGSPWTNGHRPELDPDDCWPD 345

Query: 317 CTGLCCKGVHHHTCGGGAVLRGCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNA 376
           C G C   VHH     G +         GGREARVSRYREKRRTRLFSKKIRYEVRKLNA
Sbjct: 346 CLGTCGIQVHHPYGEFGGMGEQQAAMGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNA 405

Query: 377 EKRPRMKGRFVKRTSFMGSA 396
           EKRPRMKGRFVKR SF G A
Sbjct: 406 EKRPRMKGRFVKRASFGGPA 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455924|ref|XP_002276181.1| PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera]

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 222/418 (53%), Positives = 262/418 (62%), Gaps = 47/418 (11%)

Query: 2   MTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVR 61
           M  +K+ ANAMGGKTARACD CL KRARWYC ADDAFLCQ CDASVHSANQLA RHERVR
Sbjct: 1   MITDKKVANAMGGKTARACDNCLHKRARWYCGADDAFLCQACDASVHSANQLAERHERVR 60

Query: 62  LETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAK------ANE 115
           L+ A+SC N + + +  T     P WHQGFTRKAR+PR  N K   +Q +K         
Sbjct: 61  LQ-AASCKNADSMRDNST-----PAWHQGFTRKARSPR--NVKRTSVQPSKHENKFPTPP 112

Query: 116 PLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEA-----------VEPDENLIVDGYN 164
           PLVPEIG E+ S   +    +EQ L++VP FDPF A           +E D   + D   
Sbjct: 113 PLVPEIGSEEASPDEN----EEQFLFRVPTFDPFVAELNNDGIREIGMENDSKPLSD--Y 166

Query: 165 GQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEET 224
           G +  GDLD L GFLPS++DLAEFAADVES LG G   LDEDSC +K    +LDC++ + 
Sbjct: 167 GHEEIGDLDSLTGFLPSEMDLAEFAADVESYLGAG---LDEDSCGIKGI-GVLDCEQGDM 222

Query: 225 IA----LNLKIKDEEVEEAVI------AEATREAIGCNFDYQSPVTGDDTAGLMSTECKP 274
            A      +K+K+E VE           + T+E +  N DY+S V  D+           
Sbjct: 223 DACFGDQKVKVKEERVETDATFHLDPELDMTKELLAWNLDYESTVM-DEEEHEEKMVAAV 281

Query: 275 KLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGA 334
           ++ R +SL LNY+ VITAWASQG PWT G+RPE + N  WP   G C   VH    G   
Sbjct: 282 EMRRKISLSLNYEDVITAWASQGSPWTTGNRPEFDPNDYWPDYMGACPTNVHGPC-GDVG 340

Query: 335 VLRGCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSF 392
            + G   G  GGREARV RYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR SF
Sbjct: 341 GVGGNFGGRDGGREARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASF 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809824|emb|CAN73757.1| hypothetical protein VITISV_026326 [Vitis vinifera]

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 221/419 (52%), Positives = 261/419 (62%), Gaps = 47/419 (11%)

Query: 1   MMTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERV 60
           M   + + ANAMGGKTARACD CL KRARWYC ADDAFLCQ CDASVHSANQLA RHERV
Sbjct: 65  MDLTQAKVANAMGGKTARACDNCLHKRARWYCGADDAFLCQACDASVHSANQLAERHERV 124

Query: 61  RLETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAK------AN 114
           RL+ A+SC N + + +  T     P WHQGFTRKAR+PR  N K   +Q +K        
Sbjct: 125 RLQ-AASCKNADSMRDNST-----PAWHQGFTRKARSPR--NVKRTSVQPSKHENKFPTP 176

Query: 115 EPLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEA-----------VEPDENLIVDGY 163
            PLVPEIG E+ S   +    +EQ L++VP FDPF A           +E D   + D  
Sbjct: 177 PPLVPEIGSEEASPDEN----EEQFLFRVPTFDPFVAELNNDGIREIGMENDSKPLSD-- 230

Query: 164 NGQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEE 223
            G +  GDLD L GFLPS++DLAEFAADVES LG G   LDEDSC +K    +LDC++ +
Sbjct: 231 YGHEEIGDLDSLTGFLPSEMDLAEFAADVESYLGAG---LDEDSCGIKGI-GVLDCEQGD 286

Query: 224 TIA----LNLKIKDEEVEEAVI------AEATREAIGCNFDYQSPVTGDDTAGLMSTECK 273
             A      +K+K+E VE           + T+E +  N DY+S V  D+          
Sbjct: 287 MDACFGDQKVKVKEERVETDATFHLDPELDMTKELLAWNLDYESTVM-DEEEHEEKMVAA 345

Query: 274 PKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGG 333
            ++ R +SL LNY+ VITAWASQG PWT G+RPE + N  WP   G C   VH    G  
Sbjct: 346 VEMRRKISLSLNYEDVITAWASQGSPWTTGNRPEFDPNDYWPDYMGACPTNVHGPC-GDV 404

Query: 334 AVLRGCHLGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSF 392
             + G   G  GGREARV RYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR SF
Sbjct: 405 GGVGGNFGGRDGGREARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASF 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099369|ref|XP_002311458.1| predicted protein [Populus trichocarpa] gi|222851278|gb|EEE88825.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 215/429 (50%), Positives = 268/429 (62%), Gaps = 64/429 (14%)

Query: 6   KRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65
           K +ANA+GGKTARACD C++KRARWYC ADDAFLCQ CD+SVHSAN LA RHERVRL+TA
Sbjct: 2   KSSANAVGGKTARACDSCIKKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTA 61

Query: 66  SSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANE-------PLV 118
           S      K ++  + +++VP WH GFTRKARTPRH       + Q+K  E       PLV
Sbjct: 62  SL-----KSLDLCSKENSVPSWHGGFTRKARTPRHGKP----VSQSKIAETIRNIPIPLV 112

Query: 119 PEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEA-------VEPDENLIVDGYNGQDGTGD 171
           PE+G ++ S + +++   E LLY+VP+FDPF A       +  +   IV    G DGT  
Sbjct: 113 PEVGSDEISHEDNEE---EHLLYRVPIFDPFVADLCASTTISNEAGAIVPA-GGNDGTDQ 168

Query: 172 L-----DDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLLDCKEEETIA 226
                   L GFLPSD+DLAEFAAD+ESLLG G   L+ +S  ++E   L+DCKEE+   
Sbjct: 169 RVADSNGSLPGFLPSDMDLAEFAADMESLLGRG---LENESFGMEEL-GLMDCKEEKEFE 224

Query: 227 L------NLKIKDEEVEEAVIAEATREAIGCNFDYQSPVT---GDDTAGLMSTECKPK-- 275
           +      N K+K E+ E A    A       +FDY S  T    D+  G+   + K    
Sbjct: 225 VKGFPLWNGKVKVEDEENASTDMAKDPIFELSFDYNSSATCGEEDEKVGIEEGDLKNTRG 284

Query: 276 -------LMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLCCKGVHHH 328
                    R + L L+Y+AV+TAWASQG PWT G+RP+ + + CWP C G+C   +HH 
Sbjct: 285 EYEDDDGAKRKILLSLDYEAVMTAWASQGSPWTNGNRPDFDPDECWPDCMGICGAQLHHP 344

Query: 329 TCGGGAVLRGCHLGA-----GGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMK 383
               G ++ G  LGA      GGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMK
Sbjct: 345 Y---GDMISG--LGAHPAMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMK 399

Query: 384 GRFVKRTSF 392
           GRFVKRT+ 
Sbjct: 400 GRFVKRTTL 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486554|gb|ABK95116.1| unknown [Populus trichocarpa]

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 217/461 (47%), Positives = 275/461 (59%), Gaps = 94/461 (20%)

Query: 6   KRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65
           K +ANA+GGKTARACD C++KRARWYC ADDAFLCQ CD+SVHSAN LA RHERVRL+TA
Sbjct: 5   KSSANAVGGKTARACDSCIKKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTA 64

Query: 66  SSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANE-------PLV 118
           S      K ++  + +++VP WH GFTRKARTPRH       + Q+K  E       PLV
Sbjct: 65  SL-----KSLDLCSKENSVPSWHGGFTRKARTPRHGKP----VSQSKIAETIRNIPIPLV 115

Query: 119 PEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEA-------VEPDENLIVDGYNGQDGTG- 170
           PE+G ++ S + +++   E LLY+VP+FDPF A       +  +   IV    G DGT  
Sbjct: 116 PEVGSDEISHEDNEE---EHLLYRVPIFDPFVADLCASTTISNEAGAIVPA-GGNDGTDQ 171

Query: 171 --------------------DLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDV 210
                               D++ L GFLPSD+DLAEFAAD+ESLLG G   L+ +S  +
Sbjct: 172 RVADSNGVESKILIGAIERRDVESLPGFLPSDMDLAEFAADMESLLGRG---LENESFGM 228

Query: 211 KEFWTLLDCKEEETIAL--------NLKIKDEE---VEEAVIAE---------ATREAIG 250
           +E   L+DCKEE+   +         +K++DEE   VE   + +         A      
Sbjct: 229 EEL-GLMDCKEEKEFEVKGFPLWNGKVKVEDEENASVERKAVRKCYAGIETDMAKDPIFE 287

Query: 251 CNFDYQSPVT---GDDTAGLMSTECKPK---------LMRNVSLKLNYDAVITAWASQGC 298
            +FDY S  T    D+  G+   + K             R + L L+Y+AV+TAWASQG 
Sbjct: 288 LSFDYNSSATCGEEDEKVGIEEGDLKNTRGEYEDDDGAKRKILLSLDYEAVMTAWASQGS 347

Query: 299 PWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLGA-----GGGREARVSR 353
           PWT G+RP+ + + CWP C G+C   +HH     G ++ G  LGA      GGREARVSR
Sbjct: 348 PWTNGNRPDFDPDECWPDCMGICGAQLHHPY---GDMISG--LGAHPAMVDGGREARVSR 402

Query: 354 YREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMG 394
           YREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT+  G
Sbjct: 403 YREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTTLAG 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111684|ref|XP_002315940.1| predicted protein [Populus trichocarpa] gi|222864980|gb|EEF02111.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 216/468 (46%), Positives = 275/468 (58%), Gaps = 97/468 (20%)

Query: 2   MTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVR 61
           M   K  ANA+GG+TARACD C++KRA WYC ADDAFLCQ CD+SVHSAN LA RHERVR
Sbjct: 1   MICNKSLANAVGGRTARACDSCIKKRASWYCAADDAFLCQACDSSVHSANLLARRHERVR 60

Query: 62  LETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANE------ 115
           L++AS      K  +  + ++++P WH GFTRKARTPRH       + ++K  E      
Sbjct: 61  LKSASL-----KSSDAGSKENSMPSWHGGFTRKARTPRHGKP----VSRSKIEETTRNIP 111

Query: 116 -PLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFE--------------AVEP------ 154
            PLVPE+G ++ SL+ +++   E LLY+VP+FDPF               AV P      
Sbjct: 112 IPLVPEVGSDEISLEDNEE---EHLLYRVPIFDPFAAELCTSTTVSNEAGAVVPAGGTDT 168

Query: 155 ----------DENLIVDGYNGQDGTGDLDDLHGFLPSDLDLAEFAADVESLLGGGGGALD 204
                     +  +++ G  G+    D++ LHGFLPSD+DLAEFAAD+ESLLG G   L+
Sbjct: 169 DQRAADSSGTESKVLLGGSEGK----DVESLHGFLPSDMDLAEFAADMESLLGRG---LE 221

Query: 205 EDSCDVKEFWTLLDCKEEETIAL------NLKIK-DEEVEEAVIAEATRE---------- 247
            +S  ++E   L+DCKEE  + +      N K+K +EE +  +  +A RE          
Sbjct: 222 NESFGMEEL-GLMDCKEENELGVKGYPLGNGKVKVEEEEDAGMEEKAVRECHADIEIDIA 280

Query: 248 ---AIGCNFDYQSPVT---GDDTAGLMSTECK-----------PKLMRNVSLKLNYDAVI 290
                  +FDY SP T    D+  G+   + K            K  R   L L+Y+AV+
Sbjct: 281 KDPPFELSFDYDSPATCVEEDEKVGIEEGDLKNSDGEYEDDGGAKKKRRTLLSLDYEAVM 340

Query: 291 TAWASQGCPWTAGSRPEINLNHCWP--YCTGLCCKGVHHHTCGGGAVLRGCHLGA--GGG 346
           TAWASQG PWT G RP+ + + CWP   C G+C   +HH    G     G H  A   GG
Sbjct: 341 TAWASQGSPWTNGYRPDFDADECWPDADCMGICGAQLHHPY--GDVSGLGAHPAALVDGG 398

Query: 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMG 394
           REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT+F G
Sbjct: 399 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTTFAG 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581649|ref|XP_002531628.1| conserved hypothetical protein [Ricinus communis] gi|223528746|gb|EEF30756.1| conserved hypothetical protein [Ricinus communis]

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 213/465 (45%), Positives = 268/465 (57%), Gaps = 79/465 (16%)

Query: 2   MTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVR 61
           M   K  ANA+ GKTARACD C+RKRARWYC ADDAFLCQ CD+SVHSAN LA RHERVR
Sbjct: 1   MISNKNVANAVAGKTARACDSCVRKRARWYCAADDAFLCQSCDSSVHSANPLARRHERVR 60

Query: 62  LETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANE------ 115
           L+ +S    +  +I++ +   TVP WHQGFTRKARTPR+ +    L+   K  E      
Sbjct: 61  LKISSL--KSLDIISKGSSVITVPSWHQGFTRKARTPRNGHGNKPLLSLLKIEEKSRNPI 118

Query: 116 PLVPEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEAV---------EPDEN----LIVDG 162
           PLVPE+G +D  +  +D   +EQLLY+VP+FDPF A          E D+         G
Sbjct: 119 PLVPEVGSDD-QISHEDNNEEEQLLYRVPIFDPFVAELCTPTTISNEADQTTTAPFTAGG 177

Query: 163 YNGQD------GTGDLDD----LHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKE 212
            NG D      G   ++     LHGFLPS+ DLA+FAADVESLLG G   L+ +S  +++
Sbjct: 178 GNGNDTDQTVAGANGIESKASYLHGFLPSETDLADFAADVESLLGRG---LENESFGMED 234

Query: 213 FWTLLDCKEEETI-------------ALNLKIKDEEVEEAV--------IAEATREAIGC 251
              L+DCKEE+                + L+ +++E EEAV        I  A       
Sbjct: 235 L-GLVDCKEEKQFKMQEREFSLASGQVIKLEEEEKEEEEAVRECHIDTEIDMAKEPPFEL 293

Query: 252 NFDYQSPVTGDDTAGLMS-----------------TECKPKLMRNVSLKLNYDAVITAWA 294
           +FDY S   G++   + +                 ++   K  R + L L+Y+AVITAWA
Sbjct: 294 SFDYDSATCGEEDEKVATPQRDIKSNNGEYKDNTRSKNDNKKKRKILLSLDYEAVITAWA 353

Query: 295 SQGC-PWTAGSRPEINLNHCWPYCTGLCCKGVHHHTCGGGAVLRGCHLG----AGGGREA 349
           +QG  PWT G+R +++ + CW  C G C    HH       +      G    AGGGREA
Sbjct: 354 TQGTSPWTDGTRRDVDPDECWQDCMGTCGAEFHHPYGDTNGLGGVGGGGNPAMAGGGREA 413

Query: 350 RVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMG 394
           RVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR +F G
Sbjct: 414 RVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRATFAG 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534367|ref|XP_003535727.1| PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Glycine max]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 200/434 (46%), Positives = 256/434 (58%), Gaps = 67/434 (15%)

Query: 1   MMTGEKRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERV 60
           M +  K  ANA+G KTARACD C+ KRARWYC ADDAFLCQ CD+SVHSAN LA RHERV
Sbjct: 1   MSSATKNAANAVGAKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERV 60

Query: 61  RLETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEP--LV 118
           RL+TAS  + + +   +       P WH   T+K RTPRH        + ++ N P  LV
Sbjct: 61  RLKTASYKSTDEQQQQQQQQP---PTWH---TKKPRTPRHG-------KHSRNNNPFHLV 107

Query: 119 PEIGCEDGSLQADDQVIDEQLLYQVPVFDPFEA------------VEPDENLIVDG---Y 163
           PE G E+ +   +++   EQLLY+VP+FDPF A               D+ ++      Y
Sbjct: 108 PEEGSEEANSHDENE---EQLLYRVPIFDPFVAELCGTNSSPSPVTSTDQGVVAAAEVEY 164

Query: 164 NGQDGTG------DLDDLHGFLPSDLDLAEFAADVESLLGGGGGALDEDSCDVKEFWTLL 217
            G    G      ++++LHG LPSD +LAEFAADVESLLG G     E+ C   E   L+
Sbjct: 165 KGFQSNGFCSNSSEMENLHGMLPSDAELAEFAADVESLLGRGL----ENECVGMEELGLV 220

Query: 218 DCKEEETIALNLKIKDEEVEEAVIAEATR--------EAIGCNFDYQSPVT--------G 261
           D KEEE    + K+K E+ EE+ + E           ++   +FDY++           G
Sbjct: 221 DAKEEECSVGSGKVKMEDQEESPLVEMEMDMVVGRDDQSFELSFDYETCEEVKVCDLGLG 280

Query: 262 DDTAGLMSTECKPKLMRNVSLKLNYDAVITAWASQGCPWTAGSRPEINLNHCWPYCTGLC 321
           ++       + + K  + +SL+L+Y+AVI AWASQ  PWT   +P ++ + CW  C G  
Sbjct: 281 NELGAKKENDDEVKKNK-ISLQLDYEAVIIAWASQKSPWTTADKPNLDPDECWKQCMG-S 338

Query: 322 CKGVHHHTCG--GGAVLRGCH-LGAGGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEK 378
           C+  +HH CG  GG    G H +   GGREARVSRYREKRRTRLFSKKIRYEVRKLNAEK
Sbjct: 339 CETAYHHPCGEMGGF---GIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEK 395

Query: 379 RPRMKGRFVKRTSF 392
           RPRMKGRFVKR SF
Sbjct: 396 RPRMKGRFVKRASF 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	403
TAIR|locus:2201277	406	BBX14 "B-box domain protein 14	0.928	0.921	0.424	5.8e-66
TAIR|locus:2031581	392	BBX16 "B-box domain protein 16	0.531	0.545	0.417	1.6e-65
TAIR|locus:2031180	417	BBX15 "B-box domain protein 15	0.732	0.707	0.387	6e-48
TAIR|locus:2028421	326	BBX17 "B-box domain protein 17	0.352	0.435	0.396	2.5e-45
TAIR|locus:2143206	373	CO "CONSTANS" [Arabidopsis tha	0.151	0.163	0.5	1.7e-20
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.124	0.140	0.576	3.6e-20
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.153	0.178	0.507	4.7e-20
UNIPROTKB|Q9FDX8	395	HD1 "Zinc finger protein HD1"	0.109	0.111	0.681	1.7e-19
UNIPROTKB|Q9FE92	407	Hd1 "Heading day 1" [Oryza sat	0.109	0.108	0.681	1.9e-19
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.109	0.149	0.704	5.5e-19

TAIR|locus:2201277 BBX14 "B-box domain protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 179/422 (42%), Positives = 232/422 (54%)

Query:     6 KRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65
             K  A+A+GGKTARACD C+++RARWYC ADDAFLC  CD SVHSAN LA RHERVRL++A
Sbjct:     3 KSLASAVGGKTARACDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHERVRLKSA 62

Query:    66 SSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIGCED 125
             S+     K    H        WHQGFTRKARTPR    K+  M        LVPE+  ED
Sbjct:    63 SA----GKY--RHASPPHQATWHQGFTRKARTPR-GGKKSHTM----VFHDLVPEMSTED 111

Query:   126 GSLQADDQVIDEQLLYQVPVFDPF-------EAVEPDENLIVDGYNGQDGTGDLDD---- 174
                QA+   ++EQL+++VPV +         +++E      +   + +    + DD    
Sbjct:   112 ---QAESYEVEEQLIFEVPVMNSMVEEQCFNQSLEKQNEFPMMPLSFKSSDEEDDDNAES 168

Query:   175 -LHGFLPSDLDLAEFAADVESXXXXXXXALDE-DSCDVKEFWTLL--DCKEEETIALNLK 230
              L+G  P+D++LA+F ADVE+            +   + E   +   + +EE  +   + 
Sbjct:   169 CLNGLFPTDMELAQFTADVETLLGGGDREFHSIEELGLGEMLKIEKEEVEEEGVVTREVH 228

Query:   231 IKDXXXXXX--XXXXXXXXXXGCNFDYQSPVTGDDTA------GL--MSTECKP-KLMRN 279
              +D                     FD       +D        G+  MS   K  K  + 
Sbjct:   229 DQDEGDETSPFEISFDYEYTHKTTFDEGEEDEKEDVMKNVMEMGVNEMSGGIKEEKKEKA 288

Query:   280 VSLKLNYDAVITAWASQGCPWTAGSRPEINLNH-CWPYCT-GLCCKGVHHHTCGGGAVLR 337
             + L+L+Y++VI+ W  QG PWTA    EI+L+  C+P  T G      HHH    G    
Sbjct:   289 LMLRLDYESVISTWGGQGIPWTARVPSEIDLDMVCFPTHTMGESGAEAHHHNHFRGL--- 345

Query:   338 GCHLG-AG-GGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTSFMGS 395
             G HLG AG GGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR+S +G 
Sbjct:   346 GLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRSS-IGV 404

Query:   396 AN 397
             A+
Sbjct:   405 AH 406

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2031581 BBX16 "B-box domain protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 104/249 (41%), Positives = 132/249 (53%)

Query:     5 EKRTANAMGGK-TARACDGCL-RKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL 62
             E RTA+  G K  AR CD C+ R RA WYC ADDAFLCQ CDAS+HSAN LA RHERVRL
Sbjct:     6 ESRTASVTGEKMAARGCDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKRHERVRL 65

Query:    63 ETASSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIG 122
             +++S          E  DK T  VW++GF RKARTPR  +     + Q ++N+PLVPE+G
Sbjct:    66 QSSSP--------TETADK-TTSVWYEGFRRKARTPRSKSCAFEKLLQIESNDPLVPELG 116

Query:   123 CE--DGSLQADD-QVIDEQLLYQVPVFDPFE----------AVEPDE--NLIVDGYNGQD 167
              +  DG       +  +E L   VPVFDPF            + PDE  N   +G  G+ 
Sbjct:   117 GDEDDGFFSFSSVEETEESLNCCVPVFDPFSDMLIDDINGFCLVPDEVNNTTTNGELGEV 176

Query:   168 GTGDLDD--LHGFLPSDLDLAEFAADVESXXXXXXXALDEDSC-DVKEFWTLLDCKEEET 224
                 +DD    GF+P D+DL +   DVES         +E  C   KE   +   KEE  
Sbjct:   177 EKAIMDDEGFMGFVPLDMDLEDLTMDVESLLE------EEQLCLGFKEPNDVGVIKEENK 230

Query:   225 IALNLKIKD 233
             +   +  KD
Sbjct:   231 VGFEINCKD 239

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0009641 "shade avoidance" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2031180 BBX15 "B-box domain protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 129/333 (38%), Positives = 183/333 (54%)

Query:     6 KRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65
             K  ANA+G KTARACD C+++RARWYC ADDAFLCQ CD+ VHSAN LA RHERVRL+TA
Sbjct:     3 KSLANAVGAKTARACDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRLKTA 62

Query:    66 SSCNNNNKLINEHTDKDTVPVWHQGFTRKARTPRHNNNKAMLMQQAKANEPLVPEIGCED 125
             S     +   +  +    V  WH GFTRKARTPR +  K      +     LVP+I  ED
Sbjct:    63 SPAVVKHSNHSSASPPHEVATWHHGFTRKARTPRGSGKK----NNSSIFHDLVPDISIED 118

Query:   126 GSLQADDQVIDEQLLYQVPVFDPF-------EAVEP--DENLIVDGYNGQDGTGDLDD-L 175
                Q D+  ++EQL+ QVPV DP        + VEP  +  +I  G   ++   + +  L
Sbjct:   119 ---QTDNYELEEQLICQVPVLDPLVSEQFLNDVVEPKIEFPMIRSGLMIEEEEDNAESCL 175

Query:   176 HGFLPSDLDLAEFAADVESXXX----XXXXALDEDSCDVKEFWTL----LDCKEEETIAL 227
             +GF P+D++L EFAADVE+           A++E      E + +    ++ + EE  A+
Sbjct:   176 NGFFPTDMELEEFAADVETLLGRGLDTESYAMEELGLSNSEMFKIEKDEIEEEVEEIKAM 235

Query:   228 NLKIKDXXXXXXXXXXXXXXXXGCNFDYQSP-VTGDDTA--GLMST-ECKPKLM----RN 279
             ++ I D                  +FDY+S   T ++     + S+ EC  K+     +N
Sbjct:   236 SMDIFDDDRKDVDGTVPFEL----SFDYESSHKTSEEEVMKNVESSGECVVKVKEEEHKN 291

Query:   280 V-SLKLNYDAVITAWASQGCPWTAGSRPEINLN 311
             V  L+LNYD+VI+ W  QG PW++G  PE +++
Sbjct:   292 VLMLRLNYDSVISTWGGQGPPWSSGEPPERDMD 324

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2028421 BBX17 "B-box domain protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
 Identities = 63/159 (39%), Positives = 85/159 (53%)

Query:    15 KTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSCNNNNKL 74
             K  RAC+ CL K A WYC +DDAFLC  CD SVHSAN +A++HERV L T       N++
Sbjct:    23 KQPRACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERVCLRT-------NEI 75

Query:    75 INEHTDKDTVP-VWHQGFTRKARTPRHNNNKA---MLMQQAKANEPLVPEIGCEDGSLQA 130
              N+     T+  VWH GF RKARTPR    K     +  + +  +P VPEIG E   +  
Sbjct:    76 SNDVRGGTTLTSVWHSGFRRKARTPRSRYEKKPQQKIDDERRREDPRVPEIGGE--VMFF 133

Query:   131 DDQVIDEQLLYQVPVFDPFEAVEPDENLIVDGYNGQDGT 169
               +  D+ +   VP F+ F  +       +  +NG + T
Sbjct:   134 IPEANDDDMTSLVPEFEGFTEM----GFFLSNHNGTEET 168

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2143206 CO "CONSTANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query:     6 KRTANAMG-GKT--ARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL 62
             K+ +N +G G+   AR CD C       YC AD A+LC  CDA VHSAN++ASRH+RVR+
Sbjct:     3 KQESNDIGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV 62

Query:    63 ETASSC 68
                 SC
Sbjct:    63 --CESC 66

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IGI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010018 "far-red light signaling pathway" evidence=IMP

GO:0010218 "response to far red light" evidence=IMP

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
 Identities = 30/52 (57%), Positives = 35/52 (67%)

Query:    17 ARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETASSC 68
             A+ACD C       YC AD A+LC  CDA VH+AN+LASRHERVR+    SC
Sbjct:     9 AQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV--CQSC 58

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
 Identities = 33/65 (50%), Positives = 40/65 (61%)

Query:     6 KRTANAMGGKTARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRLETA 65
             K  +N   G  ARACD C       YC AD A+LC  CDA VH+AN++ASRHERVR+   
Sbjct:     3 KEESNE-SGTWARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV--C 59

Query:    66 SSCNN 70
              SC +
Sbjct:    60 QSCES 64

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

UNIPROTKB|Q9FDX8 HD1 "Zinc finger protein HD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 152 (58.6 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
 Identities = 30/44 (68%), Positives = 34/44 (77%)

Query:   347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
             REARV RYREK++ R F K IRYE RK  AE RPR+KGRF KR+
Sbjct:   326 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 369

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0048579 "negative regulation of long-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q9FE92 Hd1 "Heading day 1" [Oryza sativa (taxid:4530)]

 Score = 152 (58.6 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 30/44 (68%), Positives = 34/44 (77%)

Query:   347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
             REARV RYREK++ R F K IRYE RK  AE RPR+KGRF KR+
Sbjct:   338 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 381

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
 Identities = 31/44 (70%), Positives = 33/44 (75%)

Query:   347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
             REARV RYREKR+ R F K IRY  RK  AE RPR+KGRF KRT
Sbjct:   229 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 272

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWD0	COL16_ARATH	No assigned EC number	0.4418	0.9032	0.8729	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_820020 hypothetical protein (393 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	403
pfam06203	45	pfam06203, CCT, CCT motif	7e-23
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	7e-08
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	7e-05
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	0.002

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 90.0 bits (224), Expect = 7e-23
 Identities = 29/45 (64%), Positives = 35/45 (77%)

Query: 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTS 391
           REA + RY+EKR+TR F KKIRY  RK  AE RPR+KGRFVK++ 
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 18 RACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL 62
          R CD    +    +C  D A LC  CD SVH      S H RV L
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 17 ARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL 62
          A  CD    + A ++C    A LC+ CD + H        H  V L
Sbjct: 3  APKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 12/43 (27%), Positives = 13/43 (30%), Gaps = 6/43 (13%)

Query: 20 CDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL 62
          C     K    YC      LC+ C  S H        H  V L
Sbjct: 6  CPEHEEKPLELYCEDCQQLLCEECALSGH------KGHTVVPL 42

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	403
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.75
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.53
smart00336	42	BBOX B-Box-type zinc finger.	96.8
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.73
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	96.39
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	94.95

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.75  E-value=3.4e-19  Score=131.68  Aligned_cols=45  Identities=64%  Similarity=1.054  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhccCCCCcccchhhhhhcccCCCCCccccccCC
Q 015643          347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRTS  391 (403)
Q Consensus       347 R~~~v~RYreKr~~R~f~KkirY~~RK~~A~~RpRvKGRFvk~~~  391 (403)
                      |+++|+||++||++|+|+|+|+|++||.+|+.|||||||||+..+
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e   45 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE   45 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence            689999999999999999999999999999999999999999863

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.53  E-value=7.7e-05  Score=51.42  Aligned_cols=38  Identities=45%  Similarity=0.795  Sum_probs=34.6

Q ss_pred             CccccCCCceEEEecccccccccccccCCcCCCCCCCCCceeee
Q 015643           19 ACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL   62 (403)
Q Consensus        19 lCD~C~~apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~RvpL   62 (403)
                      .|+.+..+++.+||..|.+.+|..|+...|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6999998899999999999999999998885      5999886

>smart00336 BBOX B-Box-type zinc finger

Probab=96.80  E-value=0.0013  Score=45.86  Aligned_cols=40  Identities=33%  Similarity=0.646  Sum_probs=35.2

Q ss_pred             CCCccccCCCceEEEecccccccccccccCCcCCCCCCCCCceeee
Q 015643           17 ARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL   62 (403)
Q Consensus        17 ~~lCD~C~~apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~RvpL   62 (403)
                      .+.|..|...++.+||..|.+.+|..|....|      +.|.++||
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            56799999899999999999999999998877      45888775

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.73  E-value=0.0012  Score=46.65  Aligned_cols=40  Identities=23%  Similarity=0.463  Sum_probs=35.5

Q ss_pred             CCCccccCCCceEEEecccccccccccccCCcCCCCCCCCCceeee
Q 015643           17 ARACDGCLRKRARWYCVADDAFLCQGCDASVHSANQLASRHERVRL   62 (403)
Q Consensus        17 ~~lCD~C~~apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~RvpL   62 (403)
                      .+.|..|...++.+||..+...+|..|....|..      |..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            4679999998899999999999999999999965      988886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=96.39  E-value=0.0012  Score=59.44  Aligned_cols=41  Identities=59%  Similarity=0.862  Sum_probs=39.8

Q ss_pred             hhhHHHHHHHHHHHhhccCCCCcccchhhhhhcccCCCCCc
Q 015643          344 GGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKG  384 (403)
Q Consensus       344 ~~~R~~~v~RYreKr~~R~f~KkirY~~RK~~A~~RpRvKG  384 (403)
                      ...|...+.||+++++.|.|.++|+|..|+.+|+.|||+||
T Consensus       290 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (340)
T KOG1601|consen  290 SHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG  330 (340)
T ss_pred             cchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence            57999999999999999999999999999999999999999

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=94.95  E-value=0.015  Score=39.49  Aligned_cols=25  Identities=40%  Similarity=0.606  Sum_probs=9.9

Q ss_pred             hhHHHHHHHHHHHhhccCCCCcccch
Q 015643          345 GGREARVSRYREKRRTRLFSKKIRYE  370 (403)
Q Consensus       345 ~~R~~~v~RYreKr~~R~f~KkirY~  370 (403)
                      ..|.++|+||.||||.|+.. +.-|.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            46899999999999999987 66664

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	403
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.41
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	93.0
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	91.98
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	87.3
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	86.92
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	80.93

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.41  E-value=0.0037  Score=50.10  Aligned_cols=43  Identities=21%  Similarity=0.411  Sum_probs=38.2

Q ss_pred             CCccccCC---CceEEEecccccccccccccCCcCCCCCCCCCcee
Q 015643           18 RACDGCLR---KRARWYCVADDAFLCQGCDASVHSANQLASRHERV   60 (403)
Q Consensus        18 ~lCD~C~~---apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~Rv   60 (403)
                      ..|++|..   .+|+.+|..+.++||..|...+|..+..+.+|..+
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            46999984   68999999999999999999999888777888866

>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}

Probab=91.98  E-value=0.046  Score=34.66  Aligned_cols=19  Identities=47%  Similarity=0.709  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHhhccCCCC
Q 015643          347 REARVSRYREKRRTRLFSK  365 (403)
Q Consensus       347 R~~~v~RYreKr~~R~f~K  365 (403)
                      |.++|+||.||||.|+..+
T Consensus         1 Rk~SLqRFleKRk~R~~~~   19 (22)
T 3ogk_Q            1 RRASLHRFLEKRKDRVTSK   19 (26)
T ss_pred             CchhHHHHHHHHHHHhhcc
Confidence            6789999999999997654

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=87.30  E-value=0.53  Score=33.70  Aligned_cols=45  Identities=22%  Similarity=0.417  Sum_probs=36.3

Q ss_pred             CCCCCccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeeecCCC
Q 015643           15 KTARACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRLETAS   66 (403)
Q Consensus        15 R~~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL~~~~   66 (403)
                      .....|..-. .+-.+||..|...+|..|-. .-|.      .|..+||..+.
T Consensus         6 ~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~   51 (53)
T 2did_A            6 SGESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGPS   51 (53)
T ss_dssp             CSCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCTT
T ss_pred             cCCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHHh
Confidence            3455798887 77899999999999999986 5673      48888888754

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=86.92  E-value=0.29  Score=38.48  Aligned_cols=44  Identities=20%  Similarity=0.375  Sum_probs=37.1

Q ss_pred             CCCCccccCC---CceEEEecccccccccccccCCcCCCCCCCCCce
Q 015643           16 TARACDGCLR---KRARWYCVADDAFLCQGCDASVHSANQLASRHER   59 (403)
Q Consensus        16 ~~~lCD~C~~---apA~vyC~aD~A~LC~~CDa~vHsAN~La~rH~R   59 (403)
                      ....|+.|..   .+|+-.|..+.++||..|=...|...+.+.+|.=
T Consensus        29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            3568999975   6899999999999999998888987777778863

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=80.93  E-value=0.94  Score=33.29  Aligned_cols=49  Identities=18%  Similarity=0.421  Sum_probs=38.3

Q ss_pred             cCCCCCCccccCCCceEEEeccccccccccccc-CCcCCCCCCCCCceeeecCCCC
Q 015643           13 GGKTARACDGCLRKRARWYCVADDAFLCQGCDA-SVHSANQLASRHERVRLETASS   67 (403)
Q Consensus        13 s~R~~~lCD~C~~apA~vyC~aD~A~LC~~CDa-~vHsAN~La~rH~RvpL~~~~~   67 (403)
                      .......|..-...+-.+||..|...+|..|-. .-|.      .|.-+||..+..
T Consensus         4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~   53 (64)
T 2d8u_A            4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQ   53 (64)
T ss_dssp             CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCS
T ss_pred             CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHH
Confidence            334556898886678899999999999999975 5774      388888877654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00