Citrus Sinensis ID: 015718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
Protein Sequence
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Secondary Structure (PSIPRED)
cccccccccEEEccccccccccccccccccccccccccccHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccHHccccccccccccccccccccccHHHHEEEEccccccccHHHHccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHEccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlqmhlsssfslkyhplqkagciktlespvthihgVLNRSQEKKYAIKCSQSNSFYNLTNkiassrnckpfnshrapvtlqdgyasksedddhsnSFLNVFLKKFHALYRFMRAYACAGVIIAttsnsllpvqtladltpAYFTGLMEALVPAVLMHIYVVAINQlsdvevdkvnkpylplasgeismGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAysvqlpllrwkgnSFLAAFCMVSLNGLLTQFPVYVHIQKYvlgrpleiftrplMFATAFISCFCVVIAFIKdlhdvdgdkkfGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Flexible Loop (DISEMBL)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINqlsdvevdKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Low Complexity Region (SEG)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYgaavvvgassPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered region (IsUnstruct)
***********LKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKI*********************************SFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFV*
Disordered Region (DISOPRED)
******************************************************************************************************KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered Region (DISEMBL)
********SFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGY********HSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Disordered Region (DISPRO)
****HLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKP******PV***D*Y*********SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	402	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.793	0.811	0.498	2e-89
B7FA90	404	Probable homogentisate ph	yes	no	0.815	0.811	0.466	8e-82
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.753	0.739	0.430	4e-72
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.733	0.721	0.402	2e-61
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.753	0.784	0.330	1e-33
Q0D576	379	Probable homogentisate ph	no	no	0.606	0.643	0.353	9e-29
C5A1J7	276	Digeranylgeranylglyceryl	yes	no	0.350	0.510	0.302	4e-08
Q4J8K2	275	Digeranylgeranylglyceryl	yes	no	0.452	0.661	0.287	5e-08
B6YW76	276	Digeranylgeranylglyceryl	yes	no	0.340	0.496	0.337	1e-07
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.378	0.540	0.290	4e-07

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  329 bits (844), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/321 (49%), Positives = 229/321 (71%), Gaps = 2/321 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 381
           RVF   V++L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I 
Sbjct: 313 RVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEIT 372

Query: 382 SFYMFIWKLYYAEYLLIPFVR 402
           S YMFIWKL+YAEYLL+PF++
Sbjct: 373 SCYMFIWKLFYAEYLLLPFLK 393

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  304 bits (778), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 155/332 (46%), Positives = 221/332 (66%), Gaps = 4/332 (1%)

Query: 74  HRAPVTLQD--GYASKSEDDDH-SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLL 130
           HR   +  D  G   +S  + H S+S          A YRF R +   G  ++  S SLL
Sbjct: 74  HRPTSSSADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLL 133

Query: 131 PVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGT 190
            V+ L+D++P + TGL+EA+V A+ M+IY+V +NQL D+E+DKVNKP LPLASGE S  T
Sbjct: 134 AVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPAT 193

Query: 191 GIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS 250
           G+A+  A A MS      + S P   A+     +GTAYS+ LP LRWK ++ +AA C+++
Sbjct: 194 GVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILA 253

Query: 251 LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFG 310
           +  ++ Q   ++HIQ +V  RP  +FTRPL+FATAF++ F VVIA  KD+ D++GD+ FG
Sbjct: 254 VRAVIVQLAFFLHIQTFVFRRP-AVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFG 312

Query: 311 IKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVR 370
           IK+ SV LG+++VF + V +L +AY  A+++GA+S  L +K  T++GH ILA+I W R R
Sbjct: 313 IKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSR 372

Query: 371 AVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
           ++DL+   +I SFYMFIWKL+YAEYLLIP VR
Sbjct: 373 SIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  272 bits (695), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/311 (43%), Positives = 201/311 (64%), Gaps = 8/311 (2%)

Query: 92  DHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALV 151
           D  N  L++F       Y+F R YA   +++  T  SL+ V+ L+DL+ A+F G ++ +V
Sbjct: 108 DSVNDALDIF-------YKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVV 160

Query: 152 PAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRS 211
             + +HI+ V +NQL D+E+DK+NKP LPLASG++S    + IT +S ++ L +A ++ S
Sbjct: 161 AVICIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDS 220

Query: 212 PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGR 271
            P  W V     V +AY+V LPLLRWK    L A   ++   +      ++H+Q  V  R
Sbjct: 221 WPLFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKR 280

Query: 272 PLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSML 331
           P   F RPL+F TA +S + +VIA  KD+ D++GD+KFGI++LS+ LG +RVF + VS+L
Sbjct: 281 P-TTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLL 339

Query: 332 SIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLY 391
            + YG  ++VGA+SP L +K+IT++GH +LAS+ W   ++VDL+ N  + SFYMFIWKL+
Sbjct: 340 EMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLH 399

Query: 392 YAEYLLIPFVR 402
            AEY LIP  R
Sbjct: 400 TAEYFLIPLFR 410

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/296 (40%), Positives = 184/296 (62%), Gaps = 1/296 (0%)

Query: 107 ALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQL 166
           A Y F   Y   G+ +   S+SLL V+ L+D++ ++  G+++ ++P + + IY+  +NQL
Sbjct: 115 AFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQL 174

Query: 167 SDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGT 226
            D+E+DK+NKP+LP+ASG+ S  TG+ I+ A   +S  +  +  S P I  ++      T
Sbjct: 175 YDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWT 234

Query: 227 AYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF 286
           AYS+ +PLLRWK   F+AA CM+S   L      + H+Q  VL RP+  F R L F  AF
Sbjct: 235 AYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIG-FPRSLGFLVAF 293

Query: 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP 346
           ++ + + +A  KD+ DV+GDK+ GI + +V LG++R F + VS   +A+G  ++ GAS  
Sbjct: 294 MTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCS 353

Query: 347 FLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
               K+ T +G+ +LASI W + ++VDLSD AS  SFYMFIWKL YA + L+  +R
Sbjct: 354 HFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKLLYAGFFLMALIR 409

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 172/321 (53%), Gaps = 18/321 (5%)

Query: 88  SEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGL- 146
           +E DD     L+   +  +A +RF+R +   G  + +T+   L  + L + T      L 
Sbjct: 77  AESDD---PVLDRIARFQNACWRFLRPHTIRGTALGSTA---LVTRALIENTHLIKWSLV 130

Query: 147 ---MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSL 203
              +  L+  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L
Sbjct: 131 LKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGL 190

Query: 204 AYAVMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV 262
              V     PFI ++ +  +F+GT YSV  P LR K     A   + ++ G L  F VY 
Sbjct: 191 -LVVGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY- 246

Query: 263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER 322
           H  +  LG P + ++ P+ F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   
Sbjct: 247 HATRAALGLPFQ-WSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRN 305

Query: 323 VFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASI 380
           +  L   +L + Y +A+ +    P +    + I  H ILAS    +   ++ ++    +I
Sbjct: 306 IAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAI 365

Query: 381 LSFYMFIWKLYYAEYLLIPFV 401
             +Y FIW L+YAEYLL PF+
Sbjct: 366 SGYYRFIWNLFYAEYLLFPFL 386

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  128 bits (321), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 141/260 (54%), Gaps = 16/260 (6%)

Query: 149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG--IAITLASALMSLAYA 206
            LV  +  + Y+V INQ+ D+ +DKVNKPYLP+A+G++S+ T   + +  A+A  S+   
Sbjct: 129 GLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSI--- 185

Query: 207 VMIRSPPFIWAVIAW-IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 265
           V+    PFI ++    +F+GT YSV  P  R K     A   + ++ G L  F VY +  
Sbjct: 186 VVTNFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YAT 242

Query: 266 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325
           +  LG   + ++ P+ F T F++ F +VIA  KDL DV+GD+K+ I TL+  LG   +  
Sbjct: 243 RAALGLTFQ-WSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAF 301

Query: 326 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILAS--IF--WLRVRAVDLSDNASIL 381
           L   +L   Y AA+ V    P    + + +  H  LA   IF  W+  +A    D  +I 
Sbjct: 302 LGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKD--AIS 359

Query: 382 SFYMFIWKLYYAEYLLIPFV 401
            +Y FIW L+YAEY+  P +
Sbjct: 360 QYYRFIWNLFYAEYIFFPLI 379

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1764 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 21/162 (12%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN   D E+D++N+P  PL  G +   T +  +L    + LA A++I    F +A++A+I
Sbjct: 56  INDYFDYEIDRINRPERPLPRGAMDRRTALWYSLFLFAVGLALALLISLKAFAFALLAYI 115

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
            +   Y+ +L  L + GN  +AA   V+        P+Y  I    +G          + 
Sbjct: 116 TM-FLYAWKLKPLPFIGNIAVAALTGVT--------PLYGAIAVGKIG----------LA 156

Query: 283 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKER 322
            T  +  F V +A   +KD+ DV+GD K G KTL ++LG+ +
Sbjct: 157 GTLAVCAFLVNVAREIVKDIEDVEGDLKKGAKTLPIILGRRK 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 20/202 (9%)

Query: 132 VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG 191
           + T    TP +F  L+  +V  +    YV  IN + D+EVDK+NKP  PL SG I++   
Sbjct: 28  IATTWKFTPLFFLPLL--VVSLIAAGGYV--INDVYDIEVDKINKPERPLPSGRIAVNIA 83

Query: 192 IAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251
              ++    + L  ++ +   PF +A+I  + +   Y+  L  L   GN       +V+L
Sbjct: 84  RRFSIVLFAVGLIISIPLGLIPFGFALITIVLL-YEYARSLKKLGLVGN------FIVAL 136

Query: 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGI 311
              L+ +  Y  +     G  L  F  P    T +I  F +   F+K + D++GDK+ G+
Sbjct: 137 TSALSAY--YGGLAS---GSLLGNFIIP----TIYIFFFTLSREFVKGIEDIEGDKRNGV 187

Query: 312 KTLSVMLGKERVFRLSVSMLSI 333
            TL+V LG++  + ++  +L I
Sbjct: 188 NTLAVKLGEKSTWIIAKIILGI 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 29/166 (17%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASAL--MSLAYAVMIRSPPFIWAVIA 220
           IN   D E+DK+N+P  PL  G  +MG  +A+  +  L  + LA A MI    FI  VIA
Sbjct: 56  INDYFDYEIDKINRPERPLPRG--AMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIA 113

Query: 221 WI--FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           ++  F+   Y+ +L  L + GN  +A        GL    P+Y  +    LG        
Sbjct: 114 YVTMFI---YAWKLKPLPFVGNIVVA--------GLTGATPLYGAVAVEHLG-------- 154

Query: 279 PLMFATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKER 322
             +     I  F V +A   IKD+ DV+GD   G KTL ++ GK+R
Sbjct: 155 --LAGYLAICAFLVNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKR 198

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 20/172 (11%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
           AIN   D E+D +NKPY P+ SG IS    + I +A +L  +A ++ +    FI  +I  
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFL---GFIEFLIVT 110

Query: 222 IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLM 281
            F  + Y+      RW   + +    +VSL    T   ++  +    L   + IF+    
Sbjct: 111 AFSLSWYAYA----RWLKRTGVPGNALVSLGVAFTL--IFGSLAAGNLTNKVIIFS---- 160

Query: 282 FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKER----VFRLSVS 329
            + AF S    +  F+K + D+ GD+  G++T++V +G +R    VF LS++
Sbjct: 161 -SVAFTSNL--IREFVKAVEDLPGDRAHGVRTIAVRIGVKRTGILVFLLSLA 209

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
219842170	411	homogentisate geranylgeranyl transferase	0.950	0.929	0.483	5e-92
295656253	401	homogentisate geranylgeranyl transferase	0.977	0.980	0.478	1e-91
359476155	397	PREDICTED: probable homogentisate phytyl	0.917	0.929	0.457	3e-91
185487419	407	homogentisate phytyltransferase [Manihot	0.893	0.882	0.475	3e-89
171190284	317	homogentisate geranylgeranyl transferase	0.743	0.943	0.553	2e-88
377657555	394	homogentisate phytyltransferase [Brassic	0.753	0.769	0.516	7e-88
297836742	393	predicted protein [Arabidopsis lyrata su	0.793	0.811	0.495	1e-87
30680535	393	homogentisate phytyltransferase 1 [Arabi	0.793	0.811	0.498	1e-87
225446000	406	PREDICTED: homogentisate phytyltransfera	0.937	0.928	0.446	2e-87
147858275	406	hypothetical protein VITISV_043992 [Viti	0.733	0.726	0.523	3e-87

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 196/405 (48%), Positives = 262/405 (64%), Gaps = 23/405 (5%)

Query: 13  KYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAI---------KCSQSNSFYNLTN-KI 62
           KY  L   G + T+      ++ +L  S  KK  I         K S+    Y L N +I
Sbjct: 15  KYQVLD-PGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNSRKKELYVLRNLRI 73

Query: 63  ASSRNCKPFNSHRAPVTLQDGY-ASKSEDDDH--SNSFLNVFLKKFHALYRFMRAYACAG 119
            + +N  P       + LQ+ + A  SED D   S+S     L+  ++LY+F R +   G
Sbjct: 74  LTRKNGIP------AIFLQNNWLAPNSEDGDDICSSSKRGPILEHLNSLYQFSRPHTVIG 127

Query: 120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL 179
            II  TS SLLPV+T+ DL+P YF GL++ALVP+VLM+IYVV +NQL DVE+DKVNKPYL
Sbjct: 128 TIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQLFDVEIDKVNKPYL 187

Query: 180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKG 239
           PLASG+ SM TGI I  AS L+SL   +  +SPP + A++    +G+ YS++LP LRWK 
Sbjct: 188 PLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGSVYSIELPFLRWKK 247

Query: 240 NSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD 299
           ++FLAA C++ +  ++ Q   +VHIQK+VLG+ + I  R LMFATAF+  F   IA  KD
Sbjct: 248 HAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFI-PRSLMFATAFMCFFSAAIALFKD 306

Query: 300 LHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP--FLANKLITIIG 357
           + DV+GD+ +GI++ SV LG+ERV  L V+ML +AYGAAVV GASSP   L  KLIT+IG
Sbjct: 307 IPDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPSSLLPVKLITMIG 366

Query: 358 HGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
           H  +A I W++ + VDL+   SI SFYMFIWKL+YAEY LIPFVR
Sbjct: 367 HSTIAWILWMKAQFVDLTSQKSITSFYMFIWKLFYAEYFLIPFVR 411

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 196/410 (47%), Positives = 263/410 (64%), Gaps = 17/410 (4%)

Query: 1   MLQMHLSSSFSLKYHPLQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNL-- 58
           M+Q H     S +       G I  L+ P  H+    N +  KK ++     +S  N+  
Sbjct: 1   MIQAHNHPFVSCRLQNPPNQGLITLLQRPQRHLK-FSNGNTAKKLSV-----HSCVNILA 54

Query: 59  -TNKIASSRNCKPFNSHRAPV-----TLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFM 112
            T  I+SSR+ KP    + P      TL+  +  +S+DD  +        +K  A YRF 
Sbjct: 55  ATLSISSSRS-KPTRGKKLPGQTLCGTLEHEFVIESKDDQLT-LLQGDLWRKIDAFYRFS 112

Query: 113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD 172
           R +   G II  TS SLLP+ ++ DL+PA+F G ++AL+P++ M+IYVV +NQL DVE+D
Sbjct: 113 RPHTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEID 172

Query: 173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQL 232
           KVNKP LPLASGE SMG G AI  A  LMS A  ++ +SPP  +A++     G+AYSV+L
Sbjct: 173 KVNKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVEL 232

Query: 233 PLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCV 292
           PLLRWK N+FLAAF ++ +  +      + HIQKYVLGRP+ +F R L FAT  IS F  
Sbjct: 233 PLLRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPM-VFPRSLCFATVCISMFTT 291

Query: 293 VIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKL 352
           VIA  KD+ DVDGD+ FGI++ SV LG++RVF L + +L IAY +A+V+GASS FL +KL
Sbjct: 292 VIALFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKL 351

Query: 353 ITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
           +T+IGH  LASI W R  +V+L DN+S+ SFYM IWKL+YAEYLLIPFVR
Sbjct: 352 VTVIGHCTLASILWRRANSVNLEDNSSMTSFYMSIWKLFYAEYLLIPFVR 401

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 179/391 (45%), Positives = 252/391 (64%), Gaps = 22/391 (5%)

Query: 17  LQKAGCIKTLESPVTHIHGVLNRSQEKKYAIKCSQSNSFYNLTNKIASSRNCK--PFNSH 74
           LQ+ GC++  +  V   H  L           C  SN F   +   +SS N +   F SH
Sbjct: 24  LQQQGCVQPPQLSVKKTHNFLK---------SCYCSNPFKCCSEGFSSSVNIQHLTFKSH 74

Query: 75  -RAP--VTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLP 131
            R P  V+ + GY SK ED +H +       K+  A Y F R +   G +I  TS SLLP
Sbjct: 75  KRNPIHVSSEYGYPSKPEDQNHVS-------KQLRAFYLFSRPHTIIGTVIGITSVSLLP 127

Query: 132 VQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTG 191
           ++T++DL+PA+F GL++A+VP+VLM+IYVV +NQ+ DVE+DKVNKP LPLASG+ SM TG
Sbjct: 128 LETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETG 187

Query: 192 IAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSL 251
             I   S LMS+   +M +SPP   A++    +GTAYS+++PLLRWK    LAA C++ +
Sbjct: 188 SQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIV 247

Query: 252 NGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGI 311
             ++ Q   + HIQK+VLGR + ++T+ ++F  AF+  F  VIA  KD+ DVDGD++FGI
Sbjct: 248 RAIVVQLAFFAHIQKHVLGRSI-VYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGI 306

Query: 312 KTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRA 371
           ++ +V LG+++VF L V+ML +AYGAA V+GASS  +  K  T+  H  LA + W+R ++
Sbjct: 307 QSFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQS 366

Query: 372 VDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
           VDLS   ++ SFYMFIWKL+YAEY LIP VR
Sbjct: 367 VDLSSKEAVTSFYMFIWKLFYAEYFLIPLVR 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|185487419|gb|ACC77744.1| homogentisate phytyltransferase [Manihot esculenta]

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 172/362 (47%), Positives = 243/362 (67%), Gaps = 3/362 (0%)

Query: 42  EKKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHS-NSFLNV 100
           E+ Y  K       ++L + +  S   +  ++H   V    G   +SE D +S  S  N 
Sbjct: 48  ERHYFAKSQHHQMKHHLRHIVERSTIYQKSDAHFL-VHATSGQPLESEPDAYSPKSTSNS 106

Query: 101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYV 160
            L    A YRF R +   G  ++  S SLL V+ L+DL+P +FTG++EA+V A+LM+IY+
Sbjct: 107 ILNALDAFYRFSRPHTVIGTALSILSVSLLAVEKLSDLSPLFFTGVLEAVVAALLMNIYI 166

Query: 161 VAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIA 220
           V +NQL+D+E+DKVNKPYLPLASGE S+G G+ I  + ++MS     ++ S P  WA+  
Sbjct: 167 VGLNQLTDIEIDKVNKPYLPLASGEYSVGIGVMIIASFSMMSFWLGWVVGSWPLFWALFV 226

Query: 221 WIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPL 280
              +GTAYS+ LPLLRWK  +F+AA C++++  ++ Q   Y+H+Q +V GRP  +F+RPL
Sbjct: 227 SFVLGTAYSINLPLLRWKRFAFVAAMCILAVRAVIVQLAFYLHMQTHVYGRP-AVFSRPL 285

Query: 281 MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 340
           +FATAF+S F VVIA  KD+ D++GDK FGI++ +V LG+ERVF   +S+L IAYG A++
Sbjct: 286 IFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFTVRLGQERVFWTCISLLEIAYGVAIL 345

Query: 341 VGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPF 400
           VGA+S    +K IT++GH ILASI W R ++VDL   A+I S YMFIWKL+YAEYLLIP 
Sbjct: 346 VGAASSHTWSKCITVLGHAILASILWNRAKSVDLKSKAAITSCYMFIWKLFYAEYLLIPL 405

Query: 401 VR 402
           VR
Sbjct: 406 VR 407

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/300 (55%), Positives = 219/300 (73%), Gaps = 1/300 (0%)

Query: 103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVA 162
           +K  A YRF R +   G I+  TS SLLP+ +  DL+PA+F GL++ ++P V ++IYVV 
Sbjct: 19  RKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYVVG 78

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           +NQL DVE+DKVNKP LP+ASGE SM TG AI  A  LMS+   +M +SPP ++ ++   
Sbjct: 79  LNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLVCF 138

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
           F GTAYS+ +PL RWK N+FLAA C+V +  +  Q  V+ HIQ+YVLGRP+ +F+R L F
Sbjct: 139 FFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPV-LFSRSLAF 197

Query: 283 ATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG 342
           A   ++ F  VIA  KD+ DVDGD+ FGI+T++V LGK+RVF L +++L IAYG+AVV+G
Sbjct: 198 AIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVIG 257

Query: 343 ASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
           +SS  L +KL+T+ GH ILASI W R  +VDL  N SI SFYMFIWKL+YAEYLLIPFVR
Sbjct: 258 SSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIWKLFYAEYLLIPFVR 317

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377657555|gb|AFB74211.1| homogentisate phytyltransferase [Brassica napus]

 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 157/304 (51%), Positives = 222/304 (73%), Gaps = 1/304 (0%)

Query: 99  NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI 158
           N F     A YRF R +   G +++  S S L V+ ++D++P  FTG++EA+V A++M+I
Sbjct: 92  NSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNI 151

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAV 218
           Y+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++MS     ++ S P  WA+
Sbjct: 152 YIVGLNQLSDVEIDKVNKPYLPLASGEYSVKTGIAIVASFSIMSFWLGWIVGSWPLFWAL 211

Query: 219 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
                +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y+HIQ +V GRP+ +FTR
Sbjct: 212 FVSFILGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPV-MFTR 270

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338
           PL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG+ERVF   VS+L +AY  A
Sbjct: 271 PLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQERVFWTCVSLLQMAYAVA 330

Query: 339 VVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLI 398
           ++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I S YMFIWKL+YAEYLL+
Sbjct: 331 ILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLSSKTEITSCYMFIWKLFYAEYLLL 390

Query: 399 PFVR 402
           PF++
Sbjct: 391 PFLK 394

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836742|ref|XP_002886253.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332093|gb|EFH62512.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/321 (49%), Positives = 229/321 (71%), Gaps = 2/321 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D +NS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-ANSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 381
           RVF   +S+L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I 
Sbjct: 313 RVFWTCISLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWTRAKSVDLSSKTEIT 372

Query: 382 SFYMFIWKLYYAEYLLIPFVR 402
           S YMFIWKL+YAEYLL+PF++
Sbjct: 373 SCYMFIWKLFYAEYLLLPFLK 393

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680535|ref|NP_849984.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana] gi|75161194|sp|Q8VWJ1.1|HPT1_ARATH RecName: Full=Homogentisate phytyltransferase 1, chloroplastic; AltName: Full=Tocopherol polyprenyltransferase 1; AltName: Full=Vitamin E pathway gene 2-1 protein; Short=AtVTE2-1; Flags: Precursor gi|17104828|gb|AAL35412.1|AF324344_1 tocopherol polyprenyltransferase [Arabidopsis thaliana] gi|17380874|gb|AAL36249.1| unknown protein [Arabidopsis thaliana] gi|20384919|gb|AAM10489.1| homogentisate phytylprenyltransferase [Arabidopsis thaliana] gi|21281072|gb|AAM45041.1| unknown protein [Arabidopsis thaliana] gi|281193026|gb|ADA57641.1| homogentisate phytyltransferase [Arabidopsis thaliana] gi|330251737|gb|AEC06831.1| homogentisate phytyltransferase 1 [Arabidopsis thaliana]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 160/321 (49%), Positives = 229/321 (71%), Gaps = 2/321 (0%)

Query: 82  DGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           +  A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P 
Sbjct: 75  NATAGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPL 133

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
            FTG++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++M
Sbjct: 134 LFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIM 193

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 194 SFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFY 253

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +HIQ +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++
Sbjct: 254 LHIQTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQK 312

Query: 322 RVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 381
           RVF   V++L +AY  A++VGA+SPF+ +K+I+++GH ILA+  W R ++VDLS    I 
Sbjct: 313 RVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEIT 372

Query: 382 SFYMFIWKLYYAEYLLIPFVR 402
           S YMFIWKL+YAEYLL+PF++
Sbjct: 373 SCYMFIWKLFYAEYLLLPFLK 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446000|ref|XP_002267306.1| PREDICTED: homogentisate phytyltransferase 1, chloroplastic [Vitis vinifera] gi|297735423|emb|CBI17863.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/381 (44%), Positives = 249/381 (65%), Gaps = 4/381 (1%)

Query: 24  KTLESPVTHIHGVLNRSQE-KKYAIKCSQSNSFYNLTNKIASSRNCKPFNSHRAPVTLQD 82
           K   SP +++   ++R+   + Y +   Q  + +++          K +N+ +  V    
Sbjct: 28  KLGHSPSSYVPVQISRNGAGRSYTVSFQQHLTKHHVRGIQEGCTFYKRWNT-KCVVNAAS 86

Query: 83  GYASKSEDDDHS-NSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA 141
           G   +SE    S  S L        A YRF R +   G  ++  S SLL V+ L+D +P 
Sbjct: 87  GQPLESEPGASSPKSTLTPVKNALDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPL 146

Query: 142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALM 201
           +FTG++EA+V A+LM+IY+V +NQ+SD+E+DKVNKPYLPLASGE S+GTG+ I  + A M
Sbjct: 147 FFTGVLEAVVAALLMNIYIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAFM 206

Query: 202 SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY 261
           S     ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y
Sbjct: 207 SFLVGWIVGSWPLFWALFVSFVLGTAYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFY 266

Query: 262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKE 321
           +H+Q +V GRP  +F+RPL+FATAF+S F VVIA  KD+ D++GD+ FGI++ SV LG++
Sbjct: 267 MHVQTFVYGRP-AVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDRIFGIRSFSVRLGQK 325

Query: 322 RVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL 381
           RVF + + +L +AYGAAV VGA+S  L +KL+T++GH +LASI W R ++VDL   A+I 
Sbjct: 326 RVFWICILLLQMAYGAAVSVGATSSCLWSKLVTVLGHAVLASILWTRAKSVDLKSKAAIT 385

Query: 382 SFYMFIWKLYYAEYLLIPFVR 402
           SFYMFIW+L+YAEY LIP VR
Sbjct: 386 SFYMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858275|emb|CAN79669.1| hypothetical protein VITISV_043992 [Vitis vinifera]

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/296 (52%), Positives = 219/296 (73%), Gaps = 1/296 (0%)

Query: 107 ALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQL 166
           A YRF R +   G  ++  S SLL V+ L+D +P +FTG++EA+V A+LM+IY+V +NQ+
Sbjct: 112 AFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLFFTGVLEAVVAALLMNIYIVGLNQI 171

Query: 167 SDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGT 226
           SD+E+DKVNKPYLPLASGE S+GTG+ I  + A+MS     ++ S P  WA+     +GT
Sbjct: 172 SDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAVMSFLVGWIVGSWPLFWALFVSFVLGT 231

Query: 227 AYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAF 286
           AYS+ LPLLRWK  + +AA C++++  ++ Q   Y+H+Q +V GRP  +F+RPL+FATAF
Sbjct: 232 AYSIDLPLLRWKRFALVAAMCILAVRAVIVQIAFYMHVQTFVYGRP-AVFSRPLIFATAF 290

Query: 287 ISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSP 346
           +S F VVIA  KD+ D++GDK FGI++ SV LG++RVF + + +L +AYGAAV VGA+S 
Sbjct: 291 MSFFSVVIALFKDIPDIEGDKIFGIRSFSVRLGQKRVFWICILLLEMAYGAAVSVGATSS 350

Query: 347 FLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
            L +KL+T++GH +LASI W R +++DL   A+I SFYMFIW+L+YAEY LIP VR
Sbjct: 351 CLWSKLVTVLGHAVLASILWTRAKSIDLKSKAAITSFYMFIWQLFYAEYFLIPLVR 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	402
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.786	0.804	0.487	1.4e-80
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.888	0.877	0.384	2.5e-65
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.728	0.714	0.425	1.8e-64
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.711	0.727	0.350	1.1e-37
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.460	0.478	0.230	0.0006

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 155/318 (48%), Positives = 220/318 (69%)

Query:    85 ASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFT 144
             A + E  D SNS    F     A YRF R +   G +++  S S L V+ ++D++P  FT
Sbjct:    78 AGQPEAFD-SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFT 136

Query:   145 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLA 204
             G++EA+V A++M+IY+V +NQLSDVE+DKVNKPYLPLASGE S+ TGIAI  + ++MS  
Sbjct:   137 GILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFW 196

Query:   205 YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI 264
                ++ S P  WA+     +GTAYS+ LPLLRWK  + +AA C++++  ++ Q   Y+HI
Sbjct:   197 LGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHI 256

Query:   265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVF 324
             Q +V GRP+ +FTRPL+FATAF+S F VVIA  KD+ D++GDK FGI++ SV LG++RVF
Sbjct:   257 QTHVFGRPI-LFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315

Query:   325 RLSVSMLSIAYXXXXXXXXXXPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFY 384
                V++L +AY          PF+ +K+I+++GH ILA+  W R ++VDLS    I S Y
Sbjct:   316 WTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCY 375

Query:   385 MFIWKLYYAEYLLIPFVR 402
             MFIWKL+YAEYLL+PF++
Sbjct:   376 MFIWKLFYAEYLLLPFLK 393

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 140/364 (38%), Positives = 211/364 (57%)

Query:    42 EKKY-AIKCSQSN--SFYNLTNKIASSRNCKPFNSHRAPVTLQDGYASKSEDDDHSNSFL 98
             +K+Y A+  S+ N    Y +    ++S+ C+      A       Y  ++ D  +    +
Sbjct:    48 QKEYCAVIFSRHNLKQHYKVNEGGSTSKECEKKYVVNAISEQSFEYEPQARDPKNIWGSV 107

Query:    99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI 158
             N  L  F   Y+F R YA   V++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI
Sbjct:   108 NDALDTF---YKFCRPYAIFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHI 164

Query:   159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAV 218
             + V +NQL D+E+DK+NKP LPLASG +S    + IT +S ++ L +A ++ S P  W V
Sbjct:   165 FDVGLNQLCDIEIDKINKPDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTV 224

Query:   219 IAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
                     AY+V LPLLRWK    L A   ++   +      ++H+Q  V  RP   F R
Sbjct:   225 FICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTT-FPR 283

Query:   279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXX 338
             PL+F TA +S + +VIA  KD+ D++GD+KFGI++LS+ LG +RVF + VS+L +AY   
Sbjct:   284 PLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVT 343

Query:   339 XXXXXXXPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLI 398
                    P L +K+IT++GH ILAS+ W   ++ DL+ N  + SFYMFIWKL+ AEY LI
Sbjct:   344 ILVGATSPILWSKIITVLGHAILASVLWYHAKSTDLTSNVVLQSFYMFIWKLHTAEYCLI 403

Query:   399 PFVR 402
             P  R
Sbjct:   404 PLFR 407

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 125/294 (42%), Positives = 187/294 (63%)

Query:   109 YRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSD 168
             Y+F R YA   +++  T  SL+ V+ L+DL+ A+F G ++ +V  + +HI+ V +NQL D
Sbjct:   118 YKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCD 177

Query:   169 VEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAY 228
             +E+DK+NKP LPLASG++S    + IT +S ++ L +A ++ S P  W V     V +AY
Sbjct:   178 IEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAY 237

Query:   229 SVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFIS 288
             +V LPLLRWK    L A   ++   +      ++H+Q  V  RP   F RPL+F TA +S
Sbjct:   238 NVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTT-FPRPLIFCTAIVS 296

Query:   289 CFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXXXXXXXXXPFL 348
              + +VIA  KD+ D++GD+KFGI++LS+ LG +RVF + VS+L + Y          P L
Sbjct:   297 IYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPIL 356

Query:   349 ANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
              +K+IT++GH +LAS+ W   ++VDL+ N  + SFYMFIWKL+ AEY LIP  R
Sbjct:   357 WSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 107/305 (35%), Positives = 164/305 (53%)

Query:   106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHI----YVV 161
             +A +RF+R +   G  + +T+   L  + L + T      L+   +  +L  I    Y+V
Sbjct:    99 NACWRFLRPHTIRGTALGSTA---LVTRALIENTHLIKWSLVLKALSGLLALICGNGYIV 155

Query:   162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
              INQ+ D+ +DKVNKPYLP+A+G++S+ +   + +  A+  L   V     PFI ++ + 
Sbjct:   156 GINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLL-VVGFNFGPFITSLYSL 214

Query:   222 -IFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPL 280
              +F+GT YSV  P LR K     A   + ++ G L  F VY H  +  LG P + ++ P+
Sbjct:   215 GLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQ-WSAPV 270

Query:   281 MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYXXXXX 340
              F T+F++ F +VIA  KDL DV+GD+KF I TL+  LG   +  L   +L + Y     
Sbjct:   271 AFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAIS 330

Query:   341 XXXXXPFLANKLITIIGHGILAS--IF--WLRVRAVDLSDNASILSFYMFIWKLYYAEYL 396
                  P +    + I  H ILAS  IF  W+  +A + +  A I  +Y FIW L+YAEYL
Sbjct:   331 LAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKA-NYTKEA-ISGYYRFIWNLFYAEYL 388

Query:   397 LIPFV 401
             L PF+
Sbjct:   389 LFPFL 393

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00060, P = 0.00060
 Identities = 48/208 (23%), Positives = 84/208 (40%)

Query:   159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWA- 217
             Y   IN   D ++D +N+PY P+ SG IS    I       L  L  A ++     +WA 
Sbjct:   150 YTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILD----VWAG 205

Query:   218 ----VIAWIFVG---TAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLG 270
                  + ++ +G    +Y    P L+ K N ++  F   +L       P +     +   
Sbjct:   206 HTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVGNF---ALGASYISLPWWAGQALFGTL 262

Query:   271 RPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 330
              P ++    L+++ A +      IA + D   V+GD+  G+++L V  G E    + V  
Sbjct:   263 TP-DVVVLTLLYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGA 316

Query:   331 LSIAYXXXXXXXXXX--PFLANKLITII 356
             + I              P+ A  L+ +I
Sbjct:   317 IDITQLSVAGYLLASGKPYYALALVALI 344


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      402       392   0.00095  117 3  11 22  0.43    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  239 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.10u 0.08s 32.18t   Elapsed:  00:00:01
  Total cpu time:  32.10u 0.08s 32.18t   Elapsed:  00:00:01
  Start:  Mon May 20 18:24:22 2013   End:  Mon May 20 18:24:23 2013

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7FA90	HPT1_ORYSJ	2, ., 5, ., 1, ., n, 8	0.4668	0.8159	0.8118	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	402
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-133
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	9e-72
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	5e-22
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	7e-19
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	2e-13
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	6e-12
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	9e-11
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-10
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	6e-09
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	2e-08
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	1e-07
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	1e-06
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	9e-06
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	1e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-05
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	8e-04
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	0.002

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  382 bits (982), Expect = e-133
 Identities = 160/281 (56%), Positives = 217/281 (77%), Gaps = 1/281 (0%)

Query: 122 IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL 181
           +  TS SLL V++L+D +P +FTGL+EALVPA+LM+IY+V +NQL D+E+DKVNKPYLPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNS 241
           ASGE S+ TG+AI  + A+MS     ++ S P  WA+     +GTAYS+ LPLLRWK ++
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 242 FLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLH 301
             AA C++++  ++ Q   ++H+Q +VLGRP  +FTRPL+FATAF+  F VVIA  KD+ 
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPA-VFTRPLIFATAFMCFFSVVIALFKDIP 179

Query: 302 DVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGIL 361
           DV+GD+ FGI++ SV LG++RVF L V++L +AY AA++VGASS FL +K+IT++GHGIL
Sbjct: 180 DVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGIL 239

Query: 362 ASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR 402
           ASI W R ++VDLS  A+I SFYMFIWKL+YAEY LIP VR
Sbjct: 240 ASILWQRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  227 bits (580), Expect = 9e-72
 Identities = 106/313 (33%), Positives = 173/313 (55%), Gaps = 18/313 (5%)

Query: 94  SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTG-------L 146
             + L       +AL++F R +     II T S S+L +  +A +  +  T        L
Sbjct: 2   PKNPLQPMTSWLYALWKFSRPHT----IIGT-SLSVLGLYLIA-IAASSNTIALANLGLL 55

Query: 147 MEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYA 206
           + A +  +  ++Y+V +NQL+D+E+D++NKP+LPLA+GE S   G  I + + +++L  A
Sbjct: 56  LGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILA 115

Query: 207 VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQK 266
             +  P  +  V   + +GTAYS  LP +R K    LAA C+ ++ G++    +++H Q 
Sbjct: 116 -ALLGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ- 171

Query: 267 YVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRL 326
           ++LG  + I    +   T F+  F   IA  KD+ D++GD+++ I T ++ LGK+ VF+L
Sbjct: 172 WLLGGSVLIPP-TVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKL 230

Query: 327 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF 386
           S  +L+  Y   + VG  S    N    I+ H IL ++ W R + VDL D  +I  FY F
Sbjct: 231 SCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQF 290

Query: 387 IWKLYYAEYLLIP 399
           IWKL++ EYLL P
Sbjct: 291 IWKLFFLEYLLFP 303

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 94.1 bits (234), Expect = 5e-22
 Identities = 61/243 (25%), Positives = 102/243 (41%), Gaps = 19/243 (7%)

Query: 153 AVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIR 210
            +L+      +N   D E+D    NKP  PL SG IS    + + LA  L+ L  A+++ 
Sbjct: 32  LLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGLLLALLL- 90

Query: 211 SPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLG 270
            P  +   +  + +G  YS   P LR K    L    +    GLL      + +  Y +G
Sbjct: 91  GPLLLLLGLLGLLLGLLYS---PPLRLKRRPLLGELVVGLAFGLL------ILLGAYAVG 141

Query: 271 RPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM 330
                   PL+     +    + I    D+ DV+GD+K GI+TL V LG++R   L    
Sbjct: 142 G---DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRALALYA-- 196

Query: 331 LSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKL 390
             +   AA+++      L   L+ ++   +LA    +  R +   +       ++FI  L
Sbjct: 197 --LLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPARTFLFIALL 254

Query: 391 YYA 393
           +  
Sbjct: 255 FGL 257

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 85.8 bits (213), Expect = 7e-19
 Identities = 61/307 (19%), Positives = 113/307 (36%), Gaps = 26/307 (8%)

Query: 98  LNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMH 157
           L   LK    L R  R      +++      LL    L  L          A +   L  
Sbjct: 6   LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLL-----AFLAFFLAR 60

Query: 158 IYVVAINQLSDVEVDKVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
                IN L+D E+D++N      PL SG +S+   + + +   L+ LA A+++ +P   
Sbjct: 61  SAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLL-NPLAF 119

Query: 216 WAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEI 275
              +A + +  AY         K  +FL    +    GL              L      
Sbjct: 120 LLSLAALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPL------ 167

Query: 276 FTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY 335
                         + +    I  + D++GD+K G+K+L V+ G ++   L+  +L +A 
Sbjct: 168 ---LAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALA-LLLLLAS 223

Query: 336 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEY 395
              V++G         LI ++G  + A +   ++  VD+ D  +  + +     L    +
Sbjct: 224 ALLVLLGL--LAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLF 281

Query: 396 LLIPFVR 402
           + +    
Sbjct: 282 IGLILAV 288

Length = 289

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 27/192 (14%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
           A+N   D EVD++N+P  P+ SG IS    + + +   ++ L  A +I    F+  ++  
Sbjct: 55  ALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114

Query: 222 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           +  G  Y+ +L      GN   +FL     +                   +G   E    
Sbjct: 115 VL-GILYNWKLKEYGLIGNLYVAFLTGMTFI--------------FGGIAVGELNEAVI- 158

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA 338
            L+ A AF+      I   KD+ DV+GD+  G +TL+++ G++   R++ ++  +A    
Sbjct: 159 -LLAAMAFLMTLGREIM--KDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILA---- 211

Query: 339 VVVGASSPFLAN 350
            V+ +  P+L  
Sbjct: 212 -VLLSPLPYLFG 222

Length = 279

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 32/227 (14%)

Query: 146 LMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAY 205
           L+  L+   L   +  +IN   D +VD +N+P  P+ SG IS+       L   +  L  
Sbjct: 40  LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLV 99

Query: 206 AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLR---WKGNSFLAAFCMVSLNGLLTQFPVYV 262
           A+++ +   +   +  I +   YS+    L+   W G   +       L  +        
Sbjct: 100 ALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGL-SYEGLPWM-------- 150

Query: 263 HIQKYVLGRPL--EIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK 320
               + +  PL  +     L+++          I  + D   V+GD++ G+++L VM+G 
Sbjct: 151 --AGHAIFAPLTWQSVVVALIYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVMIGV 203

Query: 321 ERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWL 367
           +R   ++V+ +++    A+V+G         L+ I G   +A+I +L
Sbjct: 204 KRAAIVAVTTINVF--QAMVIG---------LLLIWGQPWVATIVFL 239

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 61.7 bits (150), Expect = 9e-11
 Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 31/204 (15%)

Query: 163 INQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWI 222
           IN   D E+DK+N+P  PL  G +S    +  +L    + LA A +I    F++A+ A++
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 223 FVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMF 282
            +   Y+ +L  L + GN  +A     +        P+Y  I    +G          + 
Sbjct: 116 LM-FLYAWKLKPLPFIGNVVVALLTGAT--------PIYGAIAVGRIG----------LA 156

Query: 283 ATAFISCFCVVIA--FIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV 340
               I  F V +A   +KD+ D++GDK  G KTL +++GK+R      + +   +G   V
Sbjct: 157 GYLAICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKR-----AAYIGAIFGVLTV 211

Query: 341 VGASSPFLANKLITIIGHGILASI 364
           + +  P  A      IG G L  I
Sbjct: 212 IASFLPVKAG-----IGLGYLPII 230

Length = 277

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 24/187 (12%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
            +N   D EVD +N+PY P+ SG IS+   + +     ++ LA A ++    F+ A++  
Sbjct: 83  TLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLG- 141

Query: 222 IFVGTAYSVQLPLLR-----WKGNSFLAAFCMVSLNGL--LTQFPVYVHIQKYVLGRPLE 274
           +F+   YS   P LR     W GN  +      S  GL        +             
Sbjct: 142 LFLAWIYSA--PPLRLKQNGWLGNYAVGL----SYEGLPWWAGAAAFGAGLP-----SWP 190

Query: 275 IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334
           I    L+++          I  + D   V+GD++ G+++L V+ G++   R++  ++ + 
Sbjct: 191 IVILALLYSLGAHG-----IMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLF 245

Query: 335 YGAAVVV 341
             A + +
Sbjct: 246 QLAVIAL 252

Length = 314

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 24/198 (12%)

Query: 153 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP 212
             L+   V  IN L+D+E D +NKP   + S   + G  + + +    +      +I  P
Sbjct: 45  TFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGP 104

Query: 213 PFIWAVIAWIFVGTAYSV-------QLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQ 265
            F    I  + +G  YSV       ++PL     N  ++      L  L        + Q
Sbjct: 105 KFALIFIIPLILGILYSVFFKRRLKRIPLF---KNLVVS-----LLWALSPLILGVYYYQ 156

Query: 266 KYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR 325
             +           L+    FI     +   + D+ D++GD+K G+KTL ++LGKER   
Sbjct: 157 LTI--------FSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERT-L 207

Query: 326 LSVSMLSIAYGAAVVVGA 343
             + +L++ +   +++G 
Sbjct: 208 KFLLILNLLFLILLILGV 225

Length = 285

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 23/176 (13%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAW 221
            IN + D+E+DK+NKP  P+ SG IS+      ++   ++ L  ++ I    F+ A++  
Sbjct: 55  VINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNS 114

Query: 222 IFVGTAYSVQLPLLRWKGN---SFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTR 278
           I +   Y+  L      GN   ++L       + G L  F V   I              
Sbjct: 115 ILL-YLYAKDLKKTGLIGNLIVAYLTGL--SFIFGGLAVFNVLRII-------------- 157

Query: 279 PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA 334
            ++F  AF S +   I  +KD+ D++GD K  + TL +  G ++ + ++  +L +A
Sbjct: 158 -ILFLCAFFSTWSREI--VKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILA 210

Length = 279

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 19/206 (9%)

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI------RSP 212
           Y   IN   D ++D +N+PY P+ SG IS    I   +   +  +A A ++        P
Sbjct: 69  YTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFP 128

Query: 213 PFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRP 272
                 +   F+   YS   P L+ K N +L  F + +          Y+ +  +     
Sbjct: 129 NVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGA---------SYIALPWWAGHAL 177

Query: 273 LEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS 332
                  +   T   S   + IA + D   V+GD+  G+++L V  G E    + V  + 
Sbjct: 178 FGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAID 237

Query: 333 IAYG--AAVVVGASSPFLANKLITII 356
           I  G  AA ++       A  L+ +I
Sbjct: 238 IFQGLIAAYLLAIGENLYAAALVALI 263

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 20/183 (10%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPF 214
           ++N   D+E+D+VN+P  P+ SG +S    +  ++   L+++   V +       R    
Sbjct: 68  SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVI 127

Query: 215 IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLE 274
           I +++A +FV   YS   P L+ K N   +A  +    G +T          ++    L 
Sbjct: 128 ISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYGFIT----------FLSANALF 175

Query: 275 IFTRPLMFATAFISCF-CVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI 333
              RP +   A ++ F  + +  + D   V+GDK+ G+K+L+VM+G +  F +S  ++ +
Sbjct: 176 SDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235

Query: 334 AYG 336
            + 
Sbjct: 236 VFA 238

Length = 331

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 29/241 (12%)

Query: 134 TLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGI 192
           ++ADL +PA        L PA   ++++  +N + D + D++N               G 
Sbjct: 37  SVADLFSPAAVALFAYFLFPA---NVFLYGVNDVFDADTDELNPKK---DREREVRYRGD 90

Query: 193 AITLASALMS--LAYAVMIRSPPFIWAVI-AWIFVGTAYSVQLPLLRWKGNSFLAAFCMV 249
              L +  +S  LA A ++  PP  W  + A++ +   YS   P LR+K    L +    
Sbjct: 91  RRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDS---- 144

Query: 250 SLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKF 309
             NGL        +I   V    L   + P + A A    + + +     + D++ D+  
Sbjct: 145 LSNGL--------YILPGVAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAA 196

Query: 310 GIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRV 369
           GI+T + +LG+ R +    +       AA    A    L    + ++   ++ +I    +
Sbjct: 197 GIRTTATVLGERRTYAYCAACWL---LAAAAFAAVDLRLG--ALLLVYPALVLAILRAGI 251

Query: 370 R 370
            
Sbjct: 252 A 252

Length = 282

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 51/222 (22%)

Query: 159 YVVAINQLSDVEVDKVNKPYLPLASGEISMG---TGIAITLASALMSLAYAVMIRS---- 211
           Y   IN   D E+D +N+PY P+ SG IS     T I + L   L  LAY + + +    
Sbjct: 138 YTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL-GLAYTLDVWAGHDF 196

Query: 212 PPFIWAVIAWIFVGTAYSVQLPLLR-----WKGNSFLAA-------FCMVSLNGLLTQFP 259
           P   +  +    +   YS   P L+     W GN  L A       +   +L G LT   
Sbjct: 197 PIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLT--- 251

Query: 260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG 319
                         ++    L+++ A +      IA + D   ++GD+  G+++L V  G
Sbjct: 252 -------------PDVVVLTLLYSIAGLG-----IAIVNDFKSIEGDRALGLQSLPVAFG 293

Query: 320 KER-----VFRLSVSMLSIAYGAAVVVGASSPFLANKLITII 356
            E      V  + ++ LS+   A  ++    P+ A  L+ +I
Sbjct: 294 VETAKWICVGSIDITQLSV---AGYLLAIGKPYYALALLGLI 332

Length = 375

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 61/202 (30%)

Query: 162 AINQLSDVEVDKVNKPYLPLASGEIS-------------MGTGIAITL-----ASALMSL 203
           AIN   D E+D++N+P  P+ SG +S              G  +A  L     A AL + 
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 204 ----AYAVMIRSPPFIW-AVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF 258
                YA  ++  P +  A +A++                G++FL     V   GLL   
Sbjct: 116 LLLVLYAETLKGTPGLGNASVAYL---------------TGSTFLFGGAAVGTEGLLALL 160

Query: 259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML 318
                                 +FA A ++     I  IKD+ D++GD+  G +TL +++
Sbjct: 161 V---------------------LFALAALATLAREI--IKDVEDIEGDRAEGARTLPILI 197

Query: 319 GKERVFRLSVSMLSIAYGAAVV 340
           G  +   ++ + L +A  A+ +
Sbjct: 198 GVRKALYVAAAFLLVAVAASPL 219

Length = 276

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 41.0 bits (97), Expect = 8e-04
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 158 IYVVAINQLSDVEVDK--VNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
           +Y+  +N L D+E D+    K   P ASG + +  G+A      L  LA A+ +  P F+
Sbjct: 242 VYI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL-GPAFL 298

Query: 216 WAVIAWIFVGTAYSVQL 232
             ++A++ +  AYS++L
Sbjct: 299 LVLLAYLALTLAYSLRL 315

Length = 479

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 158 IYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFI 215
           +Y+  +N + DVE D++   K   P+ASG +S+     + +   + SLA A ++ SP   
Sbjct: 62  VYL--VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLL-SPKLA 118

Query: 216 WAVIAWIFVGTAYSVQL 232
             ++ ++ +  AYS +L
Sbjct: 119 LVLLVYLVLNLAYSFKL 135

Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	402
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	99.98
PRK05951	296	ubiA prenyltransferase; Reviewed	99.97
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.97
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.97
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.97
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.96
PRK13105	282	ubiA prenyltransferase; Reviewed	99.95
PLN02776	341	prenyltransferase	99.95
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.95
PLN02922	315	prenyltransferase	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.94
PRK12872	285	ubiA prenyltransferase; Reviewed	99.94
PRK12875	282	ubiA prenyltransferase; Reviewed	99.94
PRK08238	479	hypothetical protein; Validated	99.94
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.93
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.93
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.92
PRK13591	307	ubiA prenyltransferase; Provisional	99.92
PRK13592	299	ubiA prenyltransferase; Provisional	99.91
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.88
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.35
KOG4581	359	consensus Predicted membrane protein [Function unk	99.18
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	90.21
PRK13591	307	ubiA prenyltransferase; Provisional	86.7
PLN02922	315	prenyltransferase	86.36
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	86.29
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	85.63
PRK12872	285	ubiA prenyltransferase; Reviewed	85.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	83.54
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	83.43
PLN00012	375	chlorophyll synthetase; Provisional	83.42
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	82.01
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	81.77
PRK12875	282	ubiA prenyltransferase; Reviewed	81.75
PRK13105	282	ubiA prenyltransferase; Reviewed	81.11
PRK12884	279	ubiA prenyltransferase; Reviewed	80.2
PRK12392	331	bacteriochlorophyll c synthase; Provisional	80.04

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=2.4e-55  Score=418.92  Aligned_cols=274  Identities=58%  Similarity=1.029  Sum_probs=250.9

Q ss_pred             HHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHH
Q 015718          128 SLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAV  207 (402)
Q Consensus       128 ~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la~  207 (402)
                      +++|.+..+|.++.++.+++.++++.++++.+...+||++|+|+||+|||+||+|||++|+++|+.+...+.++|+.+++
T Consensus         7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~   86 (280)
T PLN02878          7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW   86 (280)
T ss_pred             hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46666666676666777888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHH
Q 015718          208 MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFI  287 (402)
Q Consensus       208 ~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~  287 (402)
                      .+|++++.+++..+++++++||.++||+|+||+++++..+....+++...+|+|.|++++++|++ ..++.+.++..+++
T Consensus        87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~-~~~~~~~~~~~~f~  165 (280)
T PLN02878         87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRP-AVFTRPLIFATAFM  165 (280)
T ss_pred             HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCc-cccchhHHHHHHHH
Confidence            99988888777778789999998889999999999999888888888889999999999998865 34455666666678


Q ss_pred             HHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Q 015718          288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWL  367 (402)
Q Consensus       288 ~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~  367 (402)
                      +++..+++++||++|+|||++.|++|+|+++|++++.+++..++.++|+..+++|..++..|+++++.+||++++..+++
T Consensus       166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~  245 (280)
T PLN02878        166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ  245 (280)
T ss_pred             HHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999999899999999889999999999999999999


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHHHHhccccCC
Q 015718          368 RVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR  402 (402)
Q Consensus       368 ~~~~~d~~~~~~~~~f~~~iw~l~~~ey~~~~~~~  402 (402)
                      |.+++|.+++++..+|||||||+||+||+++|++|
T Consensus       246 rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        246 RAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999987

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=1.5e-52  Score=411.57  Aligned_cols=304  Identities=32%  Similarity=0.577  Sum_probs=253.2

Q ss_pred             chhHHHHhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCC-chHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 015718           94 SNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADL-TPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD  172 (402)
Q Consensus        94 ~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~-~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~D  172 (402)
                      |++.+++..+.+++|+|++|||+.+++.++++.+.+++.....+. +...+...+.++++....+.+++.+||++|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            456678888899999999999999999999987777653322221 1112333444555556666666669999999999


Q ss_pred             ccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhh
Q 015718          173 KVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (402)
Q Consensus       173 r~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~  252 (402)
                      ++|||+||++||++|+++++.+..++.++++.+++..|++.+ +..+++.+++++||.  ||+|+||+++.++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~-~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLL-ITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHH
Confidence            999999999999999999999999999999999999986554 445678888999995  99999999999999888888


Q ss_pred             hHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (402)
Q Consensus       253 g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~  332 (402)
                      |.++.+|.+.+......+.  ..++...+++.+++++|+.+++++||++|+|||++.|+||+|+++|+|++.+++..++.
T Consensus       159 g~i~~~g~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~  236 (308)
T PRK12887        159 GVIVNLGLFLHFQWLLGGS--VLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLT  236 (308)
T ss_pred             HHHHHHHHHHHHHHHHhcc--ccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHH
Confidence            8887778766533322222  13455566777788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccccCC
Q 015718          333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEYLLIPFVR  402 (402)
Q Consensus       333 ~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~ey~~~~~~~  402 (402)
                      ++|+..+..+......+...++.+||++.+..++||.+++|.+|+++.++|||||||+||+||+++|+.|
T Consensus       237 ~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        237 ACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888777777776777799999999999999999999999999999999999999999999865

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8e-36  Score=289.52  Aligned_cols=259  Identities=16%  Similarity=0.132  Sum_probs=202.2

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCCcc
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL  181 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPl  181 (402)
                      ++|+|.|++||+....+....+.|.++|.+..++  +.   .+++.+++.+++++++|++||+.|+|+|++|+  |+||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~--~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIH--PI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            4788999999987777766666788887543222  21   24456678889999999999999999999995  59999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHH
Q 015718          182 ASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVY  261 (402)
Q Consensus       182 asG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~  261 (402)
                      |+|++|+++|+.+..++.++++.+++.+|+.++.++ ...+.+...|++      +||++.++++.++...|..+..|+ 
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~-~~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~-  148 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILS-PIVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGY-  148 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHH-
Confidence            999999999999999999999999999998776654 344555566774      899999999888766554333332 


Q ss_pred             HHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 015718          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV  341 (402)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~  341 (402)
                          .++.|+.  ......+++++...+|+.++|++|++||+|+|++.|+||+|+++|++++.++...++.++..+....
T Consensus       149 ----~Av~g~~--~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~  222 (286)
T PRK12895        149 ----LAVIPAF--PYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWIS  222 (286)
T ss_pred             ----HHHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHH
Confidence                3344442  1222345667788999999999999999999999999999999999988877666777777777777


Q ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHH
Q 015718          342 GASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYM  385 (402)
Q Consensus       342 g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~-~~f~~  385 (402)
                      |.... ++   .|+++.++.+..+.||++.+|++|+++| ..||.
T Consensus       223 g~~~~-~~---~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~  263 (286)
T PRK12895        223 GIYIR-TL---WYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFN  263 (286)
T ss_pred             HHHHh-hH---HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            76654 33   5678899999999999999999999988 66554

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=8.9e-36  Score=291.35  Aligned_cols=277  Identities=16%  Similarity=0.175  Sum_probs=212.6

Q ss_pred             HHhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--
Q 015718           99 NVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (402)
Q Consensus        99 ~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--  176 (402)
                      ...++++++|+|++||++.+....+.+.|.++|.+..++  +.   .+++.+++.+++++++|++||++|+|+|++|+  
T Consensus         9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~--~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT   83 (300)
T PRK13106          9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPP--IS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT   83 (300)
T ss_pred             hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence            346678999999999999999888788888888654333  22   24567789999999999999999999999985  


Q ss_pred             CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHh
Q 015718          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (402)
Q Consensus       177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~  256 (402)
                      |+||+|+|++|+++++.+..++.+.++.++..+|+.+..+.. +..++...|++      +||++.++++.+++..+..+
T Consensus        84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  156 (300)
T PRK13106         84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHLASIQGLAV  156 (300)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHHHHHHHHHH
Confidence            589999999999999999877777777777888876665543 44455678984      79999999998877655444


Q ss_pred             HHHHHHHHHHHHhcCCCc----cCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718          257 QFPVYVHIQKYVLGRPLE----IFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (402)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~----~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~  332 (402)
                      ..|+.     ++.|....    ..+...+++.+..++|+.++|++|++||+|+|++.|+||+|+++| +++++++..++.
T Consensus       157 ~~G~~-----a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~  230 (300)
T PRK13106        157 FSGAV-----AVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQL  230 (300)
T ss_pred             HHHHH-----HHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHH
Confidence            44432     23342100    012233455567889999999999999999999999999999999 778888877887


Q ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH------HHHHHHHHHhc
Q 015718          333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF------IWKLYYAEYLL  397 (402)
Q Consensus       333 ~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~------iw~l~~~ey~~  397 (402)
                      ++..+....|+...+++   .|.++..+....+.+|+..+|.+ +++.+.|..+      ++.++.+++++
T Consensus       231 ~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~ig~~~~~~~~~~~~~  297 (300)
T PRK13106        231 FSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK-GDFGRAFYYNIYSSIVLGLGIIIDVLL  297 (300)
T ss_pred             HHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc-hHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            77778888888777776   56678888888999999999877 5566777665      44555555543

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-35  Score=289.18  Aligned_cols=265  Identities=17%  Similarity=0.205  Sum_probs=203.7

Q ss_pred             hHHHHHHHHHHHchhhhHHHH---HHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC
Q 015718          101 FLKKFHALYRFMRAYACAGVI---IATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP  177 (402)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~---l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~  177 (402)
                      .++++++|+|++||+++.+..   +|.+.|.++|.+..++  +.   .+++++++.+++++++|++||++|+|+|++++|
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~--~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPP--LP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            446789999999999987776   4667787787554333  22   144677888999999999999999999987554


Q ss_pred             --CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718          178 --YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (402)
Q Consensus       178 --~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l  255 (402)
                        +||+|+|++|++++..++.++.++++.+++.+|+.++.+. +.+.++.+.||+      .||++.++++.+++..+..
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLC-VAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence              8999999999999999999999999999998887766554 345556789985      6888888887776555543


Q ss_pred             hHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHH
Q 015718          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY  335 (402)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~  335 (402)
                      +..++     .++.|+    .+...+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++.. ++.+..
T Consensus       153 ~l~g~-----~a~~g~----~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~-~~~~~~  222 (290)
T PRK12870        153 VLISW-----SAVTGH----LDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL-FFALTV  222 (290)
T ss_pred             HHHHH-----HHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH-HHHHHH
Confidence            33332     223454    34555667778899999999999999999999999999999999998887754 555566


Q ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHc--CCCChHHHHHHHH-HHHHH
Q 015718          336 GAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV--DLSDNASILSFYM-FIWKL  390 (402)
Q Consensus       336 ~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~--d~~~~~~~~~f~~-~iw~l  390 (402)
                      .++...++....++   .|.++..+....+.+|+..+  |.+|++.|.+||. +.|.+
T Consensus       223 ~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g  277 (290)
T PRK12870        223 GFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIG  277 (290)
T ss_pred             HHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHH
Confidence            66667777777665   45567778888899999888  7778877766654 44443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=5.2e-35  Score=284.82  Aligned_cols=259  Identities=19%  Similarity=0.171  Sum_probs=200.7

Q ss_pred             HHHHHHHHHHHchhhhHHHHH---HHHHHHHcccc-c-CCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC
Q 015718          102 LKKFHALYRFMRAYACAGVII---ATTSNSLLPVQ-T-LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~-~-~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk  176 (402)
                      ++++++|+|++|.++..+..+   |+..+..++.. + .++  +.   .+++.+++..++++++|++||++|+|+|++|+
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~--~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~   77 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPD--LK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVE   77 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCc--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCC
Confidence            467899999999998877655   44555555532 2 222  22   24567788899999999999999999999876


Q ss_pred             --CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhH
Q 015718          177 --PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (402)
Q Consensus       177 --~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~  254 (402)
                        |+||+|+|++|+++++.+..++.++++.+++.+|+..+... .+++++...||.      +||++.++++..++..+.
T Consensus        78 RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~  150 (289)
T PLN02809         78 RTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILG-ASSLLLVFTYPL------MKRFTFWPQAFLGLTFNW  150 (289)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhH------HHhcCcchHHHHHHHHHH
Confidence              49999999999999999999999999999988887666554 455666789985      899999998877654443


Q ss_pred             HhHHHHHHHHHHHHhcCCCccCcHHHH-HHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHH
Q 015718          255 LTQFPVYVHIQKYVLGRPLEIFTRPLM-FATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (402)
Q Consensus       255 l~~lg~~~~~~~~v~g~~~~~~~~~~~-~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~  333 (402)
                      .+..|+     .++.|+.    +.... .++....+|+.+++++++++|+|+|++.|+||+|+++|++...++. .+..+
T Consensus       151 ~~l~g~-----~av~g~~----~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~  220 (289)
T PLN02809        151 GALLGW-----AAVKGSL----DPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAA  220 (289)
T ss_pred             HHHHHH-----HHHhCCC----ChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHH
Confidence            333332     3344542    33333 3666778899999999999999999999999999999999666665 56666


Q ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 015718          334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM  385 (402)
Q Consensus       334 a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~  385 (402)
                      .+..+...|.....++   .|.+++++.+..+.+|++.+|++|+++|.++|.
T Consensus       221 ~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~  269 (289)
T PLN02809        221 SIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV  269 (289)
T ss_pred             HHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            7777777887777665   445688888889999999999999998866654

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=3.8e-35  Score=285.52  Aligned_cols=260  Identities=19%  Similarity=0.221  Sum_probs=202.4

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccC--CCCCccc
Q 015718          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLA  182 (402)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPla  182 (402)
                      +|+|+|++||++...+.+....|.++|....++  +.   ..++++++.+++++++|++||+.|+|+|++|  +|+||+|
T Consensus         2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~   76 (282)
T TIGR01475         2 FKDILELIKFEHTVFALPFAYAGALLAAKGLPG--LK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV   76 (282)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence            678999999999988877666788887544333  22   2456778999999999999999999999998  6799999


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHH
Q 015718          183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV  262 (402)
Q Consensus       183 sG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~  262 (402)
                      +|++|++++..++.++.++++.++..+|+++..+. ..+.++.+.|+.      +||++.++++..+...+..+..|+. 
T Consensus        77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~-  148 (282)
T TIGR01475        77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILS-PLVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV-  148 (282)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH-
Confidence            99999999999998888888888888887665444 344555788984      7999999998877655544433332 


Q ss_pred             HHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 015718          263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG  342 (402)
Q Consensus       263 ~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g  342 (402)
                          ++.|..  ......+++.+..++|+.+++++||++|+|+|++.|+||+|+++|+|+++++......+++.+....+
T Consensus       149 ----a~~g~~--~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (282)
T TIGR01475       149 ----AVIGTI--SFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG  222 (282)
T ss_pred             ----HHhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                334442  11144556667788999999999999999999999999999999999999988777777777777777


Q ss_pred             HhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHH-HHHH
Q 015718          343 ASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILS-FYMF  386 (402)
Q Consensus       343 ~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~-f~~~  386 (402)
                      ...+.++   .|.++..+....+.++.+..|.+|+++|++ |+..
T Consensus       223 ~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~  264 (282)
T TIGR01475       223 FYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAFFYA  264 (282)
T ss_pred             HHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            7766665   455666666777889999999999887765 5543

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.8e-34  Score=280.70  Aligned_cols=268  Identities=17%  Similarity=0.157  Sum_probs=202.1

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHccc---ccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCC
Q 015718          105 FHALYRFMRAYACAGVIIATTSNSLLPV---QTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (402)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~l~g~llA~---~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~R  179 (402)
                      +++|+|++||++-+......+.+.+++.   ++.  +++.   .+++.+++++++++++|++||++|+|+|++|+  |+|
T Consensus         2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~R   76 (284)
T PRK12888          2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGS--VHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGR   76 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCC
Confidence            6789999999655443222223333432   222  2222   24567889999999999999999999999998  589


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHH
Q 015718          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (402)
Q Consensus       180 PlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg  259 (402)
                      |+|+|++|+++++.++.+++.+++.++..+|+.++... .+.++....|++      .||++.++++.+++..+..+..|
T Consensus        77 PL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g  149 (284)
T PRK12888         77 ELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALA-PLAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGA  149 (284)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHH
Confidence            99999999999999988888888888888887666544 344455678985      79999989888776544333333


Q ss_pred             HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  339 (402)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i  339 (402)
                      +     .++.|.    .+...+++.+..++|+.+++++|++||+|+|++.|+||+|+++|+|++.++...+..+.+.+..
T Consensus       150 ~-----~a~~g~----~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~  220 (284)
T PRK12888        150 W-----IAVTGT----WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFV  220 (284)
T ss_pred             H-----HHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHH
Confidence            2     223444    3555667777889999999999999999999999999999999999999877677777777777


Q ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHH-HH------HHHHHHHHHh
Q 015718          340 VVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFY-MF------IWKLYYAEYL  396 (402)
Q Consensus       340 ~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~-~f~-~~------iw~l~~~ey~  396 (402)
                      ..+.....+|   .|.++..+.+..+.||++.+|.+|++.|. .|| .+      ++.++.++++
T Consensus       221 ~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ig~~~~~~~~~~~~  282 (284)
T PRK12888        221 WFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGFVGIALFGFALLDLL  282 (284)
T ss_pred             HHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            7787777777   45678888889999999999999988664 766 33      4555555543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.7e-34  Score=279.32  Aligned_cols=263  Identities=18%  Similarity=0.167  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccC---CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--
Q 015718          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL---ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~---~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--  176 (402)
                      ++++++|+|++||++.+.+....+.|.++|....   ...++.   .+++++++.+++++++|++||++|+|+|++|+  
T Consensus         5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT   81 (291)
T PRK12874          5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNPRT   81 (291)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCC
Confidence            4578999999999998888777777777764211   112222   25567788889999999999999999999997  


Q ss_pred             CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHh
Q 015718          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (402)
Q Consensus       177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~  256 (402)
                      |+||+|||++|+++++.++.++.++++.+++.+|+.+..+. +..+++...||+      +||++.++++..++..+..+
T Consensus        82 ~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~~  154 (291)
T PRK12874         82 ANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLS-FPFLIVLGGYSY------FKRFSSLAHLVLGLSLGLAP  154 (291)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHhh------hcccccccHHHHHHHHHHHH
Confidence            48999999999999999999888888888888887766554 445556789995      79999999988876655444


Q ss_pred             HHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG  336 (402)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~  336 (402)
                      .+|+     .++.|+    .+...+++.+.+++|+.+++++|+++|+|+|+++|+||+|+++|++++.++......+...
T Consensus       155 l~G~-----~av~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~  225 (291)
T PRK12874        155 IAGV-----VAVLGE----IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVL  225 (291)
T ss_pred             HHHH-----HHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHH
Confidence            4443     234454    3444566667788999999999999999999999999999999999988876555554444


Q ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 015718          337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  386 (402)
Q Consensus       337 ~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~  386 (402)
                      .....+.....++   +++++..+.+..+.++.+.++.+|++.++.||..
T Consensus       226 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~s  272 (291)
T PRK12874        226 FWLLFVWCAHLGL---FAYLGVIVSALILLYEHYLVRKDFKKIDKAFFTL  272 (291)
T ss_pred             HHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4455554444444   4556777777888899888877777778887654

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-34  Score=280.94  Aligned_cols=267  Identities=15%  Similarity=0.045  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHH---HHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC-
Q 015718          102 LKKFHALYRFMRAYACAGVIIAT---TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP-  177 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~---l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~-  177 (402)
                      ++++++|+|++||+++.++.+.+   +.|.+++.+..++  ..   ..++++++..++++++|++||+.|+|+|++|+| 
T Consensus         4 ~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~--~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT   78 (294)
T PRK12873          4 SIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPS--LL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERT   78 (294)
T ss_pred             hHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence            34688999999999999887744   4566666433222  11   255678899999999999999999999999765 


Q ss_pred             -CCcccccccChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhh
Q 015718          178 -YLPLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (402)
Q Consensus       178 -~RPlasG~is~~~a~~~~~~~~~~~l~la~~l----~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~  252 (402)
                       +||+|+|++|+++|+.++.++.++++.+.+.+    |+.++.++ +..++....||+      +||++...++..++..
T Consensus        79 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~  151 (294)
T PRK12873         79 KNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA-FLALPPILIYPS------AKRWFAYPQAILALCW  151 (294)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHH------HHhccccchHHHHHHH
Confidence             99999999999999999999999998887665    44455444 344556788995      7999988888776654


Q ss_pred             hHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (402)
Q Consensus       253 g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~  332 (402)
                      +..+..|+     .++.|+.  ......+++++.+++|+.+++++++++|+|+|+++|++|+|+++|++. ......++.
T Consensus       152 a~~~l~gw-----~Av~g~~--~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~-~~~~~~~~~  223 (294)
T PRK12873        152 GFAVLIPW-----AAAEGSL--NGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNA-LKTVQICYF  223 (294)
T ss_pred             HhHHHHHH-----HHHhCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhh-HHHHHHHHH
Confidence            43333332     3455653  222233445577899999999999999999999999999999999864 444457777


Q ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCC--hHHH-HHHHHHHHHHH
Q 015718          333 IAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSD--NASI-LSFYMFIWKLY  391 (402)
Q Consensus       333 ~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~--~~~~-~~f~~~iw~l~  391 (402)
                      +...++...|...+.++   .|.++.++.+..+.+|++.+|.+|  +++| +.|..+.|.++
T Consensus       224 ~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~  282 (294)
T PRK12873        224 LTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGS  282 (294)
T ss_pred             HHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHH
Confidence            77778888898888877   566788888889999999999887  3555 66666666554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=7.7e-34  Score=276.37  Aligned_cols=264  Identities=17%  Similarity=0.163  Sum_probs=199.0

Q ss_pred             HHHHHHHHHHHchhhhHHHHH---HHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--
Q 015718          102 LKKFHALYRFMRAYACAGVII---ATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--  176 (402)
                      ++++++|+|++|+|++.++.+   |.+.|.++|.+..++  +.   ..++++++.+++++++|++||++|+|+|++++  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            357899999999887766654   556677777543333  11   14456678889999999999999999999765  


Q ss_pred             CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHh
Q 015718          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (402)
Q Consensus       177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~  256 (402)
                      |+||+|||++|++++..++.++.++++.+++.+|+..+.+. +.+.++.+.|+.      .||++.++++..++..|..+
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLS-VAALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence            48999999999999999999999999998888887665544 445566789974      68888888887766555443


Q ss_pred             HHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG  336 (402)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~  336 (402)
                      .+++.     ++.|.    .+...+++.+...+|+...+++++++|+|+|+++|+||+|+++|+|++.+.. .++.+...
T Consensus       150 ~~g~~-----a~~~~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~  219 (282)
T PRK12848        150 PMAFA-----AVQGS----VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG-LLQLATLA  219 (282)
T ss_pred             HHHHH-----HHhCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH-HHHHHHHH
Confidence            33332     23343    3555667777789999999999999999999999999999999999888775 45555555


Q ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHHHHHH
Q 015718          337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYMFIWKL  390 (402)
Q Consensus       337 ~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~-~~f~~~iw~l  390 (402)
                      .....++....++   .|.++..+....+.++++.+|.+|+++| ++|+.+.|.+
T Consensus       220 ~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~~g  271 (282)
T PRK12848        220 LLAWAGWLLGLGW---AYYWGLLVAAALFVYQQKLIRDREREACFKAFLNNNWVG  271 (282)
T ss_pred             HHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcHHH
Confidence            5555566555544   4567777888889999999998888766 5555554443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=275.22  Aligned_cols=265  Identities=17%  Similarity=0.150  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC--CC
Q 015718          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YL  179 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~--~R  179 (402)
                      -+++++|+|++||++...+..+.+.|.++|..+.++  +.   .+++.+++.+++++++|++||++|+|+|++|+|  +|
T Consensus         5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~R   79 (291)
T PRK12886          5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGR   79 (291)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Confidence            357889999999999988877778888888544333  11   245677888999999999999999999999984  89


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHH
Q 015718          180 PLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (402)
Q Consensus       180 PlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg  259 (402)
                      |+|+|++|++++..+...+.+.++.+++.+|++++.+.. ...++...|+.      +||++.++++..++..+..+..|
T Consensus        80 PL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g  152 (291)
T PRK12886         80 AIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLGA  152 (291)
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHHH
Confidence            999999999999988776666666666778876665543 34555789995      79999999888776544333333


Q ss_pred             HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  339 (402)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i  339 (402)
                      +     .++.|+    .+...+++.+.+++|+.+++++++++|+|+|+++|+||+|+++|+++++++........+.+.+
T Consensus       153 ~-----~a~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~  223 (291)
T PRK12886        153 W-----IAIRGT----IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF  223 (291)
T ss_pred             H-----HHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence            2     233454    3555666677788999999999999999999999999999999999999887666666666666


Q ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCCh-HHHHH-HHHHHHHH
Q 015718          340 VVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASILS-FYMFIWKL  390 (402)
Q Consensus       340 ~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~-~~~~~-f~~~iw~l  390 (402)
                      ..+.....++   .|.++.++....+.++.+..+.+|+ +.|++ |..++|.+
T Consensus       224 ~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~~  273 (291)
T PRK12886        224 ALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYIS  273 (291)
T ss_pred             HHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHHH
Confidence            6666655555   4556666666777788888887774 46656 55555554

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.1e-33  Score=273.03  Aligned_cols=277  Identities=13%  Similarity=0.175  Sum_probs=202.3

Q ss_pred             HHHHHHHHHHch-hhhHHHHHHHHHHHHccc------cc---CCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 015718          103 KKFHALYRFMRA-YACAGVIIATTSNSLLPV------QT---LADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD  172 (402)
Q Consensus       103 ~~l~~~~~l~Rp-~~~~~~~l~~l~g~llA~------~~---~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~D  172 (402)
                      ++++.|.|++|. |+.+...+.. .|+++|.      ++   .++     +..+++..++++.+++++|++||+.|+|+|
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD   75 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLS-ASTVFALSLPEISFSLFSLGG-----IKTISLGGSAFFCARTVGIIVNQIIDCAID   75 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccccCCCcCCCC-----HHHHHHHHHHHHHHHHHHHHHHhHHHhccc
Confidence            357899999996 7777655544 3667774      22   222     223567889999999999999999999999


Q ss_pred             ccCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHH
Q 015718          173 KVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS  250 (402)
Q Consensus       173 r~nk~--~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~  250 (402)
                      ++|+|  +||+|+|++|+++|+.+..++.++++.++..+|+.++.++. +.+++...||+      +||++.++++..++
T Consensus        76 ~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl  148 (300)
T PRK12876         76 KKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGL  148 (300)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHH
Confidence            99985  99999999999999999988888888888889987776654 45555689985      89999999987766


Q ss_pred             hhhHHhHHHHHHHHHHHHhcCCCccCcH----HHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHH
Q 015718          251 LNGLLTQFPVYVHIQKYVLGRPLEIFTR----PLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRL  326 (402)
Q Consensus       251 ~~g~l~~lg~~~~~~~~v~g~~~~~~~~----~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l  326 (402)
                      ..+..+..++     .++.++.   .+.    ..+++....++|+.++|++|++||+|+|++.|+||+|+++|++++.++
T Consensus       149 ~~~~~~l~~~-----~Av~~~~---~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~i  220 (300)
T PRK12876        149 VYYLAILMNF-----FAIIETP---LSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRI  220 (300)
T ss_pred             HHHHHHHHHH-----HHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHH
Confidence            5443332232     2334442   222    223445566778889999999999999999999999999999988777


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HHHHHHcCCCChHHHHHHHHH-HH--HHHHHHHhccccC
Q 015718          327 SVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIF--WLRVRAVDLSDNASILSFYMF-IW--KLYYAEYLLIPFV  401 (402)
Q Consensus       327 ~~~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l--~~~~~~~d~~~~~~~~~f~~~-iw--~l~~~ey~~~~~~  401 (402)
                      ...++.+...+++..|.....++  .+|..+.++.+..+  .+|.+.+|.++++.|.+||.. .|  -++++..+..+..
T Consensus       221 a~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~  298 (300)
T PRK12876        221 ASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFLL  298 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHcc
Confidence            76777777777777888877776  34555665444444  455477787888888887764 33  3444555555544


Q ss_pred             C
Q 015718          402 R  402 (402)
Q Consensus       402 ~  402 (402)
                      |
T Consensus       299 ~  299 (300)
T PRK12876        299 R  299 (300)
T ss_pred             C
Confidence            3

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-33  Score=273.92  Aligned_cols=264  Identities=19%  Similarity=0.203  Sum_probs=190.8

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas  183 (402)
                      ++|+|+|++||++...+.++.+.|.+++.+..++  ..   ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            4789999999999999999998898888543221  11   145677888999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHH
Q 015718          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (402)
Q Consensus       184 G~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~  263 (402)
                      |++|+++++.++.++.++++.+++.+|+..+... .++.++.+.||.     |+||++.++++.++...|..+.+|..  
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~-~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~--  149 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIA-LFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA--  149 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999998886555443 455566889985     78999988888776554543333321  


Q ss_pred             HHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 015718          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA  343 (402)
Q Consensus       264 ~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~  343 (402)
                          ..+..   .....+.+.+..++|+.+++++||++|+|+|+++|+||+|+++|+|++.++......+... ....++
T Consensus       150 ----~~~~~---~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~-~~~~~~  221 (276)
T PRK12882        150 ----AVGTE---GLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVA-ASPLPY  221 (276)
T ss_pred             ----Hhccc---chHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence                22321   1223344455567788899999999999999999999999999999999886554433333 222222


Q ss_pred             -hcCcchHHHHHHHHHHHH-HHHHHHHHHHcCCCChHHHHH-HHHHHHHHH
Q 015718          344 -SSPFLANKLITIIGHGIL-ASIFWLRVRAVDLSDNASILS-FYMFIWKLY  391 (402)
Q Consensus       344 -~~~~~~~~~~~~~g~~i~-a~~l~~~~~~~d~~~~~~~~~-f~~~iw~l~  391 (402)
                       ....++   .|.+...+. ...+....+..|.+|++.+++ |...+|-+.
T Consensus       222 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~g~  269 (276)
T PRK12882        222 LLSTFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKYGMFLAL  269 (276)
T ss_pred             HHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence             222333   344444443 344445667777778776655 445566554

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.7e-33  Score=273.40  Aligned_cols=263  Identities=19%  Similarity=0.261  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCccc
Q 015718          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLA  182 (402)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPla  182 (402)
                      +++++|++++||+++..+.++.+.|.++|....+   +.   .+++.+++.+++++++|++||++|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            4788999999999999999998888888854332   11   24566788899999999999999999999999999999


Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHH
Q 015718          183 SGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV  262 (402)
Q Consensus       183 sG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~  262 (402)
                      +|++|+++++.++.++.++++.++..+|+..+... +++.++++.||.     ++||++++++++.+..++..+..++. 
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~-  148 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVV-ILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGI-  148 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999988887555443 456677899996     58999988888877665543333322 


Q ss_pred             HHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 015718          263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG  342 (402)
Q Consensus       263 ~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g  342 (402)
                          ++ +..    +...+++....++|+.++++++|++|+|+|++.|+||+|+++|+|++.++...+....+.+....+
T Consensus       149 ----~~-~~~----~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~  219 (279)
T PRK12884        149 ----AV-GEL----NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPY  219 (279)
T ss_pred             ----Hh-CCC----chHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22 321    224455556677888999999999999999999999999999999999987666666665444433


Q ss_pred             HhcCcchHHHHHHHHHHHHHHHHHHHH-HHcCCCChHHHHHHHHHHHHH
Q 015718          343 ASSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSFYMFIWKL  390 (402)
Q Consensus       343 ~~~~~~~~~~~~~~g~~i~a~~l~~~~-~~~d~~~~~~~~~f~~~iw~l  390 (402)
                      .....+|   .|.+...+....+.++. +..+.+|++.++.+....+..
T Consensus       220 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  265 (279)
T PRK12884        220 LFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKVRKITLTA  265 (279)
T ss_pred             HHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            3333334   35555556666666665 556666777776664444333

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.7e-33  Score=273.65  Aligned_cols=255  Identities=20%  Similarity=0.247  Sum_probs=188.3

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas  183 (402)
                      ++++|++++||+++..+.++.+.|.+++.+...+  +.   .+++++++.+++++++|++||++|+|+|++|+|+||+|+
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKID--LK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcc--hH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            4688999999999999999998888887542222  21   245677888999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHH
Q 015718          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (402)
Q Consensus       184 G~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~  263 (402)
                      |++|+++++.++.++.++++.+++.+|++.+... +.+.++.++||.     ++||++.++++.++...|..+..|+.  
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~--  148 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIA-LLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGL--  148 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999988887666544 455566889995     58999999999888766655544432  


Q ss_pred             HHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 015718          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGA  343 (402)
Q Consensus       264 ~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~  343 (402)
                         ++.+      ....+++....++|+.+++++||++|+|+|++.|+||+|+++|+|++.++......+..........
T Consensus       149 ---~~~~------~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~  219 (279)
T PRK09573        149 ---AVFN------VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYF  219 (279)
T ss_pred             ---HHcc------chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2222      1223444556678888999999999999999999999999999999998875444433333322211


Q ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHH-HHcCCCChHHHHHH
Q 015718          344 SSPFLANKLITIIGHGILASIFWLRV-RAVDLSDNASILSF  383 (402)
Q Consensus       344 ~~~~~~~~~~~~~g~~i~a~~l~~~~-~~~d~~~~~~~~~f  383 (402)
                      ....+|   .|.++..+....+.++. +..+.+|++.++.-
T Consensus       220 ~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (279)
T PRK09573        220 LGIFGI---YYLIVVIICDILFIIAMLILLKNPSIEGASKA  257 (279)
T ss_pred             HHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence            111233   45555555556666663 44455566655443

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=2.3e-33  Score=273.99  Aligned_cols=266  Identities=23%  Similarity=0.322  Sum_probs=207.4

Q ss_pred             HhHHHHHHHHHHHchhhhHHHHHHH---HHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC
Q 015718          100 VFLKKFHALYRFMRAYACAGVIIAT---TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK  176 (402)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~---l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk  176 (402)
                      ..+++++.+.+++|++++.++.+.+   ..|..++...+++     +...++++++++++++++|++||+.|+|+||+|+
T Consensus         5 ~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~   79 (289)
T COG0382           5 SLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINP   79 (289)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCC
Confidence            4456677777778777777776544   4455555422221     2346678889999999999999999999999999


Q ss_pred             C--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhH
Q 015718          177 P--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (402)
Q Consensus       177 ~--~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~  254 (402)
                      |  +||+|||++|+++++.+.++++++++.+++.+|++.+.+ .+++.++.+.|+      ++||.+.+++++++...+.
T Consensus        80 rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l-~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~  152 (289)
T COG0382          80 RTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLL-SLAALVLALAYP------FLKRFTFLPQLVLGLAFGL  152 (289)
T ss_pred             CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH------HhhcCCchHHHHHHHHHHH
Confidence            9  999999999999999999999999999999999876544 467788899995      5899999999998776654


Q ss_pred             HhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHH
Q 015718          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA  334 (402)
Q Consensus       255 l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a  334 (402)
                      .+..|+.     ++.|.    .....+++.++..+|+++++++||++|+|+|++.|+||+|+.+|++++..++.... ..
T Consensus       153 ~~~~g~~-----a~~~~----~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~  222 (289)
T COG0382         153 GALAGAA-----AVGGS----LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LA  222 (289)
T ss_pred             HHHHHHH-----HHhCc----cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HH
Confidence            4443332     23332    24556778888999999999999999999999999999999999999999875554 55


Q ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 015718          335 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWK  389 (402)
Q Consensus       335 ~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~iw~  389 (402)
                      ..++..++.......  ..+..+..+.+..+.+|...+|.++++.++.++..-..
T Consensus       223 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (289)
T COG0382         223 SALLVLLGLLAGLLG--LIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLL  275 (289)
T ss_pred             HHHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhH
Confidence            555555565554432  35677888888889999999988888888888775333

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=3.7e-33  Score=271.95  Aligned_cols=266  Identities=17%  Similarity=0.206  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHchhhhHHH---HHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--
Q 015718          102 LKKFHALYRFMRAYACAGV---IIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--  176 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~---~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--  176 (402)
                      .+++++|+|++||+++.+.   .+|.+.|.++|.... ..++.   ..++++++.+++++++|++||++|+|.|++|+  
T Consensus         4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt   79 (285)
T PRK12847          4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART   79 (285)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence            4578999999999988764   467777888875432 12222   25567788899999999999999999999866  


Q ss_pred             CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHh
Q 015718          177 PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLT  256 (402)
Q Consensus       177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~  256 (402)
                      ++||+|+|++|++++..++.++.++++.+++.+|+..+... +++.++.+.||.      .||++.++++..++..+..+
T Consensus        80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~  152 (285)
T PRK12847         80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLS-FIAVILIVLYPL------MKRFFYWPQLFLGFTFNMGI  152 (285)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhccc------cccCCcccHHHHHHHHHHHH
Confidence            48999999999999999999999999998888887665544 455666889985      78988888877765444322


Q ss_pred             HHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG  336 (402)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~  336 (402)
                      ..++     .++.|.    .+...+++.+..++|+.+++++++++|+|+|+++|+||+|+++|++++.++........+ 
T Consensus       153 l~~~-----~a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~-  222 (285)
T PRK12847        153 LMAF-----AAVQNQ----LDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLI-  222 (285)
T ss_pred             HHHH-----HHHcCC----CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHH-
Confidence            2222     223343    355566777788999999999999999999999999999999999999888755443333 


Q ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHHHHHHHH
Q 015718          337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASIL-SFYMFIWKLY  391 (402)
Q Consensus       337 ~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~-~f~~~iw~l~  391 (402)
                      .....+......+  .+| ++.++....+.++...+|.+|++.++ .|+.+++.++
T Consensus       223 ~~~~~~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~  275 (285)
T PRK12847        223 LWLILGIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCMYAFKANHYVGL  275 (285)
T ss_pred             HHHHHHHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHH
Confidence            3344454444433  233 35555566788888899988877554 4555565554

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=5.6e-33  Score=273.64  Aligned_cols=270  Identities=15%  Similarity=0.085  Sum_probs=201.3

Q ss_pred             HHHHhHHHHHHHHHHH---chhhhHHHHHHHHHHHHcccccCC---CCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 015718           97 FLNVFLKKFHALYRFM---RAYACAGVIIATTSNSLLPVQTLA---DLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE  170 (402)
Q Consensus        97 ~~~~~~~~l~~~~~l~---Rp~~~~~~~l~~l~g~llA~~~~~---~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e  170 (402)
                      +....++++++|+|++   ||+......+|.+.|.++|.....   ..++.   ..++++++.+++++++|++||++|+|
T Consensus        22 ~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~   98 (314)
T PRK12878         22 VDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRD   98 (314)
T ss_pred             hhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344668999999999   777888888898899888855311   22221   25567889999999999999999999


Q ss_pred             ccccCC--CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHH
Q 015718          171 VDKVNK--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCM  248 (402)
Q Consensus       171 ~Dr~nk--~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~  248 (402)
                      +|+.++  ++||+++|++|++++..++.++.++++.+.+..|++.+.+. +.++++.+.|+.      .||++.+++...
T Consensus        99 iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~KR~t~~~~~~~  171 (314)
T PRK12878         99 IDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALG-IASLAIVAAYPF------MKRITWWPQFFL  171 (314)
T ss_pred             cccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH------HHhcCCcchHHH
Confidence            999866  48999999999999999999999999999888887665544 456666889984      798887777665


Q ss_pred             HHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHH
Q 015718          249 VSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSV  328 (402)
Q Consensus       249 ~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~  328 (402)
                      ++..+..+..|++     +..|+    ++...+++++..++|+..++.+++++|+|+|+++|+||+|+++|+++++++. 
T Consensus       172 Gl~~~~~~l~g~~-----a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~-  241 (314)
T PRK12878        172 GLAFSWGALMGWA-----AHFGS----LSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLV-  241 (314)
T ss_pred             HHHHHHHHHHHHH-----HHhCC----CchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHH-
Confidence            5443333333332     23454    3555566677788999999999999999999999999999999999998886 


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-HHHH
Q 015718          329 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWK  389 (402)
Q Consensus       329 ~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~-~iw~  389 (402)
                      .+..+......+.+.....+|   .|.++.......+.++...+|.+|++.|+++|. +++.
T Consensus       242 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~n~~~  300 (314)
T PRK12878        242 LFYGLAVLLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKSNRDA  300 (314)
T ss_pred             HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHhHHH
Confidence            445454454455555555555   345566666667889999988888877666654 3443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=3.9e-33  Score=271.27  Aligned_cols=261  Identities=18%  Similarity=0.187  Sum_probs=193.5

Q ss_pred             HHHHHHHHchhhhHHHHH---HHHHHHHcccc--cCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--C
Q 015718          105 FHALYRFMRAYACAGVII---ATTSNSLLPVQ--TLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--P  177 (402)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l---~~l~g~llA~~--~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~  177 (402)
                      +++|.|++|++++.++.+   |.+.|..+|..  ..++  +.   ..++.+++..++++++|++||++|+|+|+.|+  |
T Consensus         1 ~~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~--~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~   75 (281)
T TIGR01474         1 LLPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPP--LY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTK   75 (281)
T ss_pred             ChHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCc--HH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCccc
Confidence            357899999888766644   55567777743  2222  21   13456678889999999999999999999765  4


Q ss_pred             CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhH
Q 015718          178 YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (402)
Q Consensus       178 ~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~  257 (402)
                      +||+|+|++|++++..++.++.++++.+++.+|+..+... ++++++.+.||.      .||++.++++..++..+..+.
T Consensus        76 ~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~-~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~  148 (281)
T TIGR01474        76 SRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLG-VASLALVATYPF------MKRITYWPQLVLGLAFGWGAL  148 (281)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhch------hcccccccHHHHHHHHHHHHH
Confidence            8999999999999999999999999999988887666544 456667899994      799998888877655444333


Q ss_pred             HHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHH
Q 015718          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA  337 (402)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~  337 (402)
                      .|++     ++.|.    .+...+++.....+|+.+++++++++|+|+|+++|+||+|+++|++++++.. .+..++...
T Consensus       149 ~g~~-----a~~g~----~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~-~~~~~~~~~  218 (281)
T TIGR01474       149 MGWA-----AVTGD----LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLG-GLYALMILL  218 (281)
T ss_pred             HHHH-----HHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHH-HHHHHHHHH
Confidence            3432     23454    3445555667788999999999999999999999999999999998876654 445454444


Q ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-HHHHH
Q 015718          338 AVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWKL  390 (402)
Q Consensus       338 ~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~-~iw~l  390 (402)
                      ..+.+.....++   .|.++..+.+..+.+++..+|.+|+++|+++|. +++.+
T Consensus       219 ~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~  269 (281)
T TIGR01474       219 LALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKANNYVG  269 (281)
T ss_pred             HHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhHHH
Confidence            455555555555   455777778888889998888877776655554 44443

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=4.6e-33  Score=275.50  Aligned_cols=255  Identities=19%  Similarity=0.304  Sum_probs=182.9

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccC-CCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCc
Q 015718          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTL-ADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLP  180 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~-~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RP  180 (402)
                      .+++|+|++++||+++. ..+|.+.|.++|.+.. ++... ....+...++...+...++|++||++|+|+|++|||.||
T Consensus         9 ~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~-~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRp   86 (331)
T PRK12392          9 VDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHD-YLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRP   86 (331)
T ss_pred             hHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhH-HHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCCC
Confidence            34688999999999888 6677777777775322 22111 110112223333455677899999999999999999999


Q ss_pred             ccccccChHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhh
Q 015718          181 LASGEISMGTGIAITLASALMSLAYAVMIRS-------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (402)
Q Consensus       181 lasG~is~~~a~~~~~~~~~~~l~la~~l~~-------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g  253 (402)
                      +++|++|+++++.+..++.++++.+++.++.       +.+++..+++++++++||.  ||+++||+++.+...+++..+
T Consensus        87 l~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~~  164 (331)
T PRK12392         87 IPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSYG  164 (331)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHHH
Confidence            9999999999999999999988888766542       2233333456778899995  899999998877776655444


Q ss_pred             HHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHH
Q 015718          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (402)
Q Consensus       254 ~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~  333 (402)
                      .....+     ..+..|.    .+...+++.+..++|+.+++++||++|+|+|++.|+||+|+++|++++.++......+
T Consensus       165 ~~~~~~-----~~a~~g~----~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~  235 (331)
T PRK12392        165 FITFLS-----ANALFSD----IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHH-----HHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence            332222     1233443    3445556666778899999999999999999999999999999999999987655546


Q ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHc
Q 015718          334 AYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAV  372 (402)
Q Consensus       334 a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~  372 (402)
                      .....+..++....++   .+....++.+..+.+|.+..
T Consensus       236 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~l~  271 (331)
T PRK12392        236 VFAVFAWLAWSWGFTV---LMYFILVGLVLNIVIQIQLY  271 (331)
T ss_pred             HHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHHH
Confidence            6666666777666665   23345556666677777653

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=5.6e-33  Score=274.05  Aligned_cols=227  Identities=21%  Similarity=0.275  Sum_probs=174.5

Q ss_pred             HhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCC
Q 015718          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY  178 (402)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~  178 (402)
                      ...+++++|++++||+++.+++++++.|++.+. .. ++... .+..++..+++..++++++|.+||++|+|+|++|||+
T Consensus        22 ~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~   99 (314)
T PRK07566         22 PTTSIWKARLQLMKPITWFPPMWAFLCGAVSSG-AF-GWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPY   99 (314)
T ss_pred             ccchHHHHHHHHhCCcchHHHHHHHHHHHHHcC-CC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCC
Confidence            355778999999999999999999887766542 22 22111 1111234557778899999999999999999999999


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHH
Q 015718          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (402)
Q Consensus       179 RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~l  258 (402)
                      ||+++|++|+++++.++.++.++++.+++.+|++.+.+. +.+++++++||.  ||+++||+++++++.+++..|.++.+
T Consensus       100 Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~-l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~  176 (314)
T PRK07566        100 RPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAA-LLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWW  176 (314)
T ss_pred             CCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHH-HHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999988886555433 456777899995  88999999988888877655433322


Q ss_pred             HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHH
Q 015718          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  338 (402)
Q Consensus       259 g~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~  338 (402)
                      +.    ..++.+..   .+...++..+..+++..+++++||++|+|+|+++|+||+|+++|++++++++..++.+++.+.
T Consensus       177 ~g----~~~~~~~~---~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        177 AG----AAAFGAGL---PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             HH----HHHhccCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            21    12222221   344455555667778888999999999999999999999999999999998877777776654

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=1.8e-32  Score=274.83  Aligned_cols=221  Identities=20%  Similarity=0.318  Sum_probs=165.4

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCC
Q 015718          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (402)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~R  179 (402)
                      ..+++|.|++++||++|..+.++++.|.... +.+ ++... ....++.++++..++++++|++||++|+|+|++|+|+|
T Consensus        81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R  158 (375)
T PLN00012         81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR  158 (375)
T ss_pred             chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence            4577899999999999999999988887743 222 11111 11123556777888999999999999999999999999


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhh
Q 015718          180 PLASGEISMGTGIAITLASALMSLAYAVMI-------RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (402)
Q Consensus       180 PlasG~is~~~a~~~~~~~~~~~l~la~~l-------~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~  252 (402)
                      |+++|++|+++++....++.++++.+++.+       +++.+ +..+++++++++||.  ||+++||++++|++.++...
T Consensus       159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~-~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~  235 (375)
T PLN00012        159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF-YLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASY  235 (375)
T ss_pred             CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHH
Confidence            999999999999997777777666666544       22222 223456667899995  89999999999988765433


Q ss_pred             hHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (402)
Q Consensus       253 g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~  332 (402)
                      +   .++++. + .++.|.    ++...+++.+++++|+.+++++||++|+|+|++.|++|+||++|++++++++..++.
T Consensus       236 ~---~lp~~~-g-~a~~g~----~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~  306 (375)
T PLN00012        236 I---SLPWWA-G-QALFGT----LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID  306 (375)
T ss_pred             H---HHHHHH-H-HHHcCC----CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence            3   233321 1 234454    355555666677889999999999999999999999999999999999998754444


Q ss_pred             HHH
Q 015718          333 IAY  335 (402)
Q Consensus       333 ~a~  335 (402)
                      +..
T Consensus       307 l~~  309 (375)
T PLN00012        307 ITQ  309 (375)
T ss_pred             HHH
Confidence            443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=9.1e-33  Score=268.95  Aligned_cols=222  Identities=20%  Similarity=0.222  Sum_probs=172.4

Q ss_pred             HHHHHHHchhhhHHHHHHHHHHHHcccccCCC-CchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCccccc
Q 015718          106 HALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASG  184 (402)
Q Consensus       106 ~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG  184 (402)
                      |+|++++||+++..+..+++.|.+++.....+ +++  ...++.++++..+.+.++|.+||++|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            36889999999999999999998887322122 222  222344667888999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHH
Q 015718          185 EISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHI  264 (402)
Q Consensus       185 ~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~  264 (402)
                      ++|++++..+..++.++++.+++.++.+......+++.+++++||.  ||+++||+++++++..++..+..+..+.+   
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~---  153 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGH---  153 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHH---
Confidence            9999999999999999999999888766533344566777899995  89999999988888776543322221111   


Q ss_pred             HHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHH
Q 015718          265 QKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV  340 (402)
Q Consensus       265 ~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~  340 (402)
                        ...+.    .+...++.....++++.+++++||++|+|+|+++|+||+|+++|+|++++++..++.+++...+.
T Consensus       154 --~~~~~----~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       154 --AIFAP----LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             --HHhCC----CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence              12232    34444555566778888899999999999999999999999999999999987777777765544

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=8e-32  Score=263.88  Aligned_cols=268  Identities=14%  Similarity=0.085  Sum_probs=189.3

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CC
Q 015718          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PY  178 (402)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~  178 (402)
                      .++++++|+|++||+.+..+.++.+.|.++|.+...+  +.   .+++++++..++++++|++||++|+|+|++|+  |+
T Consensus         6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~   80 (296)
T PRK04375          6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPP--LL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN   80 (296)
T ss_pred             hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence            3457999999999999999999999998888543222  22   24567788999999999999999999999987  69


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH-h
Q 015718          179 LPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL-T  256 (402)
Q Consensus       179 RPlasG~is~~~a~~~~~~~~~~~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l-~  256 (402)
                      ||+|+|++|++++..++.++.++++.+++. .|+.+..+..+......+.||.     ++||++.. +...+...|.. +
T Consensus        81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~~-~~~v~~~~g~~~~  154 (296)
T PRK04375         81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTPQ-NIVIGGAAGAMPP  154 (296)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCcc-chHHHHHHHHhHH
Confidence            999999999999999999999999988754 4655554433333334678985     58999964 44443333322 2


Q ss_pred             HHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH
Q 015718          257 QFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG  336 (402)
Q Consensus       257 ~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~  336 (402)
                      ..|+     .++.|.    .+...+++.+..++|+..++..++++|+|||+++|+||+|+++|+++++++... ..+...
T Consensus       155 l~g~-----~a~~g~----~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~  224 (296)
T PRK04375        155 LIGW-----AAVTGS----LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILL-YTVLLV  224 (296)
T ss_pred             HHHH-----HHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHH-HHHHHH
Confidence            2222     223343    355566677788999999999999999999999999999999999988887643 333333


Q ss_pred             HHHHHHHh-cCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHH-HHHHHHHHHHH
Q 015718          337 AAVVVGAS-SPFLANKLITIIGHGILASIFWLRVRAVDLSDNASI-LSFYMFIWKLY  391 (402)
Q Consensus       337 ~~i~~g~~-~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~-~~f~~~iw~l~  391 (402)
                      ....+... ...+|  .++..+....+..+.++.+..|.+|++.+ +.|+...|.+.
T Consensus       225 ~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~~  279 (296)
T PRK04375        225 AVSLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYLT  279 (296)
T ss_pred             HHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHH
Confidence            32222222 22444  22222444455666677777777776654 66666665543

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1.9e-31  Score=259.22  Aligned_cols=266  Identities=15%  Similarity=0.151  Sum_probs=189.3

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCCcc
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPL  181 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPl  181 (402)
                      ++++|+|++||++.....++.+.|.+++.+...+  +.   .+++.+++..++++++|++||++|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~--~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVS--WL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            3678999999999888889998898888543222  22   24457778889999999999999999999987  69999


Q ss_pred             cccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHH
Q 015718          182 ASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPV  260 (402)
Q Consensus       182 asG~is~~~a~~~~~~~~~~~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~  260 (402)
                      |+|++|++++..++.++.++++.+++. +|+.+.....+..++..+.||.     ++||+++...+..+ ..|..+.++.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~-~~g~~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWLNIVIGG-FAGNAAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChHHHHHHH-HHHHHHHHHH
Confidence            999999999999999999999998877 7765433333445566788995     58999986554443 3343443333


Q ss_pred             HHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHH
Q 015718          261 YVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVV  340 (402)
Q Consensus       261 ~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~  340 (402)
                      +.    +..|.    .+...+++.+.+++|+.++....+++|+|+|+++|+||+|+++|+|++.+....+..+.......
T Consensus       150 ~~----a~~g~----~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~  221 (279)
T PRK12869        150 YA----SGTGS----LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL  221 (279)
T ss_pred             HH----HHhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence            32    23343    35555666677888998887778899999999999999999999999988765554443333333


Q ss_pred             HHHhcCcchHHHHHHHHHHHH-HHHHHHHHHHcCCCChH-HHHHHHHHHHHHHH
Q 015718          341 VGASSPFLANKLITIIGHGIL-ASIFWLRVRAVDLSDNA-SILSFYMFIWKLYY  392 (402)
Q Consensus       341 ~g~~~~~~~~~~~~~~g~~i~-a~~l~~~~~~~d~~~~~-~~~~f~~~iw~l~~  392 (402)
                      .+. ...++   .|.++..+. +..+.++.+..+.+|++ +.+.|..++|.+..
T Consensus       222 ~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~~  271 (279)
T PRK12869        222 LYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPYLAL  271 (279)
T ss_pred             HHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Confidence            333 33444   444444433 33444555666555555 45667778887654

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=6.3e-31  Score=258.57  Aligned_cols=228  Identities=21%  Similarity=0.309  Sum_probs=171.0

Q ss_pred             HhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchH-HHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCC
Q 015718          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA-YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPY  178 (402)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~-~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~  178 (402)
                      ...++++.|++++||+++..++++++.|...+ +.+ ++... ....++.++++..++++++|.+||++|+|.|+.|+|+
T Consensus        11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~~~-~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~   88 (306)
T TIGR02056        11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-GNF-HWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY   88 (306)
T ss_pred             cchhHHHHHHHHcChHhhHHHHHHHHHHHHHc-CCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence            34566889999999999999999998887754 222 11111 1111334456778999999999999999999999999


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhh
Q 015718          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRS------PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLN  252 (402)
Q Consensus       179 RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~------~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~  252 (402)
                      ||+++|++|+++++.++.++.++++.+++.+..      +..++..+++++++++||.  ||+++||+++++++.++...
T Consensus        89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~  166 (306)
T TIGR02056        89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASY  166 (306)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHH
Confidence            999999999999999998888888887765431      2223333566777999995  89999999988887765443


Q ss_pred             hHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718          253 GLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (402)
Q Consensus       253 g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~  332 (402)
                      +..+..+.     ..++|.    ++...++..+..++|+.+++++||++|+|+|++.|+||+|+++|+|++++++..+..
T Consensus       167 ~~~~~~~~-----~a~~g~----~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~  237 (306)
T TIGR02056       167 IALPWWAG-----HALFGE----LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAID  237 (306)
T ss_pred             HHHHHHHH-----HHHhCC----CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHH
Confidence            32222211     123443    355555666677789999999999999999999999999999999999999877766


Q ss_pred             HHHHHHHH
Q 015718          333 IAYGAAVV  340 (402)
Q Consensus       333 ~a~~~~i~  340 (402)
                      .++.+.+.
T Consensus       238 ~~~~~~~~  245 (306)
T TIGR02056       238 IFQGLIAA  245 (306)
T ss_pred             HHHHHHHH
Confidence            66654433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=9.3e-31  Score=254.49  Aligned_cols=268  Identities=16%  Similarity=0.129  Sum_probs=190.9

Q ss_pred             HHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCCcccc
Q 015718          106 HALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYLPLAS  183 (402)
Q Consensus       106 ~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~RPlas  183 (402)
                      |+|+|++||+++..+.++++.|.++|.... +.++.   .+++++++.+++++++|++||++|+|+|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            468999999999999999999988885432 12222   24567788999999999999999999999976  6999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHH
Q 015718          184 GEISMGTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYV  262 (402)
Q Consensus       184 G~is~~~a~~~~~~~~~~~l~l-a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~  262 (402)
                      |++|++++..++.++.++|+.+ ...+|+....+..+..++..++||.     .+||++..+.+..++ .|..++++.|.
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~-----~lKr~~~~~~~v~~~-~g~~~~l~g~~  150 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI-----WLKRRTPQNTVIGGF-AGAVPPLIGWA  150 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh-----hhccCCchhHHHHHH-HHHHHHHHHHH
Confidence            9999999999999999998884 4457765554433222234788994     379998876655543 34333333332


Q ss_pred             HHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 015718          263 HIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVG  342 (402)
Q Consensus       263 ~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g  342 (402)
                          +..|.    .+...+++...+.+|+..++...+++|+|+|+++|+||+|+++|+|++.+..............+.+
T Consensus       151 ----a~~g~----~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (280)
T TIGR01473       151 ----AVTGS----ISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA  222 (280)
T ss_pred             ----HhcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22343    3555566667788899888888889999999999999999999999888775444333333333334


Q ss_pred             HhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCC-ChH-HHHHHHHHHHHHHHH
Q 015718          343 ASSPFLANKLITIIGHGILASIFWLRVRAVDLS-DNA-SILSFYMFIWKLYYA  393 (402)
Q Consensus       343 ~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~-~~~-~~~~f~~~iw~l~~~  393 (402)
                      .....++  .++.++..+.+..+.++.+..|.+ |++ +.+.|+...+.+...
T Consensus       223 ~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~  273 (280)
T TIGR01473       223 FLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALL  273 (280)
T ss_pred             HHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            4444555  333356666677777888777766 554 556777777766543

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=1e-30  Score=253.78  Aligned_cols=204  Identities=24%  Similarity=0.330  Sum_probs=159.3

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas  183 (402)
                      ++|+|++++||+++..+.++.+.|.+++.+..++.  .   ..++.+++.++.++++|++||++|+|+|+.|||+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~--~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPI--K---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH--H---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            46789999999999999998888888875433321  1   134566778888999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHH
Q 015718          184 GEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVH  263 (402)
Q Consensus       184 G~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~  263 (402)
                      |++|++++..++.++.++|+.+++.+|++.+.+. +.+.++++.|+.     ++||.+.++++.++...|..+..|+.  
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~--  148 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFA-LGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAI--  148 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999988887666544 455667899996     68998888888887666654433332  


Q ss_pred             HHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHH
Q 015718          264 IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVS  329 (402)
Q Consensus       264 ~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~  329 (402)
                         ++ +.    .+...++ ....++++..+++.||++|+|+|+++|+||+|+++|+|+++++...
T Consensus       149 ---a~-~~----~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~  205 (277)
T PRK12883        149 ---AV-GR----IGLAGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAI  205 (277)
T ss_pred             ---Hh-cc----ccHHHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHH
Confidence               12 32    2332222 2334556678889999999999999999999999999999887643

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.98  E-value=5.2e-30  Score=247.73  Aligned_cols=264  Identities=17%  Similarity=0.190  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcc
Q 015718          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPL  181 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPl  181 (402)
                      ...++.+++++||..|+....++..|...+.+. .|..+..   +++.+......+.+.|.+||++|+|+|++|+|+||+
T Consensus         9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i   84 (292)
T PRK13595          9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW   84 (292)
T ss_pred             hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence            456777999999999999999999998776432 2321122   334455566778899999999999999999999999


Q ss_pred             cccccChHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhH
Q 015718          182 ASGEISMGTGIAITLASALM----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (402)
Q Consensus       182 asG~is~~~a~~~~~~~~~~----~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~  257 (402)
                      ++|++|++++..+..++.+.    ++.+++..|++.+.+ .+++.++.++||.  ||+|+|++++++++++.. .|.   
T Consensus        85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l-~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~~~-~g~---  157 (292)
T PRK13595         85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLL-LLLYAALFVGYSL--PPLRFKARPFLDGLSNAA-YAL---  157 (292)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHcc--CccchhcCcchhHHHHHH-HHH---
Confidence            99999999998865544443    456667777655544 3566788999995  999999999999888632 232   


Q ss_pred             HHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHH
Q 015718          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGA  337 (402)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~  337 (402)
                       ++.  .+..+.|..    ...  .......+|.+++++++|++|+||||+.|+||+|+++|+|++.+++..+..++-.+
T Consensus       158 -p~~--~~~~~~g~~----~~~--~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~  228 (292)
T PRK13595        158 -PLA--LPALALGAP----VPW--PPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL  228 (292)
T ss_pred             -HHH--HHHHHcCCc----chH--HHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence             211  122334432    222  22245678889999999999999999999999999999999999987666554444


Q ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH
Q 015718          338 AVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMFIWKLYYAEY  395 (402)
Q Consensus       338 ~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~ey  395 (402)
                      +....   ...+  +...+..++.+.    +-. .|.+.++.-+.|..|||..+.+..
T Consensus       229 ~~~~~---~~~~--~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~g~  276 (292)
T PRK13595        229 LWPVS---RLTA--LALWLICGGMAL----ALW-RRPTPETAHRLYPLSIVTPWIVGT  276 (292)
T ss_pred             HHHhc---chHH--HHHHHHHHHHHH----HHh-cCCCHHHHhccchHHHHHhHHHHH
Confidence            33322   2222  111122222222    212 566666677888888887655443

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.1e-29  Score=248.77  Aligned_cols=267  Identities=14%  Similarity=0.163  Sum_probs=190.4

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC-----CC
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK-----PY  178 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk-----~~  178 (402)
                      ++|.|++.+||+++.....|.+.|.++|.....++++.   ..++++++..++++++|.+||++|.+.|..|+     |+
T Consensus         3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~   79 (296)
T PRK05951          3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL---LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ   79 (296)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence            57899999999999999999999988886433345443   25567889999999999999999954444433     78


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhH
Q 015718          179 LPLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGL  254 (402)
Q Consensus       179 RPlasG~is~~~a~~~~~~~~~~~l~la~~----l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~  254 (402)
                      ||+++|++|++++...+.++..+++.++..    .+. ..++..+++.++++.||.  ||+++|++++ |++..++..|.
T Consensus        80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~-~~l~l~~~~~~~~~~Yt~--~P~~lky~gl-Ge~~v~~~~g~  155 (296)
T PRK05951         80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGI-GAVTLALLGVFLWTCYMG--PPFFLKYRWL-GEHLVFYAWSH  155 (296)
T ss_pred             CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHcC--CCcccCCCCc-hHHHHHHHHHH
Confidence            999999999999999888877766555432    343 333344567788999994  8989998765 67666666676


Q ss_pred             HhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHH
Q 015718          255 LTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIA  334 (402)
Q Consensus       255 l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a  334 (402)
                      ...+|.+..     ....   ++...+.......+++.....+|++||+|+|++.|+||+|+++|+|++ +....+...+
T Consensus       156 ~~vlg~~~~-----~~~~---~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~  226 (296)
T PRK05951        156 MLVMGLIYV-----WLGN---LSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP  226 (296)
T ss_pred             HHHHHHHHH-----HhCc---ccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence            665655432     2221   344445555667777888899999999999999999999999999999 5555667777


Q ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 015718          335 YGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYMF  386 (402)
Q Consensus       335 ~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~~  386 (402)
                      |...+........++....+.+++......+.++.+..|.++.+.+-+.+..
T Consensus       227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (296)
T PRK05951        227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQLFML  278 (296)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHH
Confidence            7755555444333332334555555555555666666666555555555544

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=2.6e-29  Score=246.76  Aligned_cols=268  Identities=13%  Similarity=0.122  Sum_probs=186.2

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC--CCC
Q 015718          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK--PYL  179 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk--~~R  179 (402)
                      ++++++|++++||+++..+.++.+.|.+++....  .++.   ..++++++..++++++|++||++|+|+|+.++  ++|
T Consensus        10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~--~~~~---~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R   84 (306)
T PRK13362         10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASKGH--VDPV---LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR   84 (306)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC--CCHH---HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence            4467899999999999999999999988884332  2222   14456678889999999999999999999754  589


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHH
Q 015718          180 PLASGEISMGTGIAITLASALMSLAYAV-MIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (402)
Q Consensus       180 PlasG~is~~~a~~~~~~~~~~~l~la~-~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~l  258 (402)
                      |+|||++|+++++.++.++.++|+.++. ..|+.......+..+...++||.     ++||++..+++..++..+..+..
T Consensus        85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~  159 (306)
T PRK13362         85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV  159 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence            9999999999999999999999988654 45755443333334445678994     58999998888776554433333


Q ss_pred             HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHH
Q 015718          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  338 (402)
Q Consensus       259 g~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~  338 (402)
                      |+.     ++.|.    .+...+++.+.+++|+..++...+++|.|||+++|+||+|+++|++++.+.. .+..+.....
T Consensus       160 G~~-----a~~g~----~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~-~~~~~~~~~~  229 (306)
T PRK13362        160 GYC-----AVTGQ----FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI-VLYILVFALV  229 (306)
T ss_pred             HHH-----HHcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH-HHHHHHHHHH
Confidence            332     33444    3555667778899999999999999999999999999999999999888754 3333333332


Q ss_pred             HHHHHhcC-cchHHHHHHHHHHHHHHHHHHHHH---HcCCCCh-HHHHHHHHHHHHHHH
Q 015718          339 VVVGASSP-FLANKLITIIGHGILASIFWLRVR---AVDLSDN-ASILSFYMFIWKLYY  392 (402)
Q Consensus       339 i~~g~~~~-~~~~~~~~~~g~~i~a~~l~~~~~---~~d~~~~-~~~~~f~~~iw~l~~  392 (402)
                      .......+ .++   .|.+...+....+++...   +-+.+|+ .+.+.|+.++|++..
T Consensus       230 s~l~~~~g~~g~---~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~~  285 (306)
T PRK13362        230 TALLPLAGYTGI---GYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTITA  285 (306)
T ss_pred             HHHHHHHccccH---HHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence            22222222 233   343333333333333332   2121333 356677777777654

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=5.8e-29  Score=243.30  Aligned_cols=230  Identities=16%  Similarity=0.185  Sum_probs=175.6

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCc--cccc--cCCCCC
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDK--VNKPYL  179 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~--e~Dr--~nk~~R  179 (402)
                      .+++|++++||+++..+.+|++.|.++|... .++++.   ..++.+++.++++.++|.+|||+|+  +.|+  .++|+|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r   77 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR   77 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence            3678999999999999999999998887432 233332   2556778889999999999999998  5675  467899


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718          180 PLASGEISMGTGIAITLASALMSLAYAVM----IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (402)
Q Consensus       180 PlasG~is~~~a~~~~~~~~~~~l~la~~----l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l  255 (402)
                      |+++|++|++++...+.++.++++.++..    .++ ...+..+++++++++||.  ||.++|++++ +++..++..|..
T Consensus        78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~Ys~--~p~~~~~~gl-ge~~~~~~~G~~  153 (293)
T PRK06080         78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGW-WLLLLGLLCIAAAILYTG--GPKPYGYTGL-GELFVGVFFGLV  153 (293)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhhcC--CCCccCCCCc-HHHHHHHHHHHH
Confidence            99999999999998887777766665543    343 333334556777899995  8888888775 777776666655


Q ss_pred             hHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHH
Q 015718          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY  335 (402)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~  335 (402)
                      ...+.+.     +...   ..+...++..++.++|+...+++||++|+|+|++.|+||+|+++|+|++++++..+..++|
T Consensus       154 ~~~~~~~-----~~~~---~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~  225 (293)
T PRK06080        154 IVLGTYY-----LQAG---TVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY  225 (293)
T ss_pred             HHHHHHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence            4443322     1112   1355566677778889999999999999999999999999999999999999999998998


Q ss_pred             HHHHHHHHhcCcch
Q 015718          336 GAAVVVGASSPFLA  349 (402)
Q Consensus       336 ~~~i~~g~~~~~~~  349 (402)
                      +..+........++
T Consensus       226 ~~~~~~~~~~~~~~  239 (293)
T PRK06080        226 LCIVLLALLGLASP  239 (293)
T ss_pred             HHHHHHHHHhhhhH
Confidence            87776665544444

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=7.6e-28  Score=235.44  Aligned_cols=269  Identities=13%  Similarity=0.109  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccC-------
Q 015718          103 KKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN-------  175 (402)
Q Consensus       103 ~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n-------  175 (402)
                      .++++|++++||++......+++.|.++|......+++..   .++.+++..++..++|++||+.|+|.|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4688999999999888877777778777631111222321   222334444455778999999999999865       


Q ss_pred             --C--CCCcccccccChHHHHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhhccCCccccccccc---cchhH
Q 015718          176 --K--PYLPLASGEISMGTGIAITLASALMSLAYAVMIRSP---PFIWAVIAWIFVGTAYSVQLPLLRWKGN---SFLAA  245 (402)
Q Consensus       176 --k--~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~---~~~~~l~~~~~l~~~Ys~~lpp~rlKr~---~~l~~  245 (402)
                        |  ++||+++|++|++++..+..++.++++.++..++..   ......+.+.++++.|+.      .||.   |. +.
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~kr~~~~p~-~~  152 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV------KKRNQKYPV-AQ  152 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccccccH-HH
Confidence              3  489999999999999999999999888887665432   121222344566778884      2332   31 12


Q ss_pred             HHHHHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHH
Q 015718          246 FCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR  325 (402)
Q Consensus       246 l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~  325 (402)
                      +..++..+.+ ++..+     ...|.    .+...++...+.++|+.+++++||++|+|||++.|+||+|+++|++++++
T Consensus       153 l~G~~~~~~~-~~~g~-----~~~g~----~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~  222 (297)
T PRK12871        153 LLGRTDFTLF-PAAGY-----LCYGQ----PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY  222 (297)
T ss_pred             HHHHHHHHHH-HHHHH-----HHhCC----CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence            1121111221 22112     23443    34455666677889999999999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH--HHHHHHHHHH
Q 015718          326 LSVSMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM--FIWKLYYAEY  395 (402)
Q Consensus       326 l~~~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~--~iw~l~~~ey  395 (402)
                      ....+..+....  ..+.....++  ..+....++.+..+.+|.+..+.+|++.|-+-|.  .....+|..-
T Consensus       223 ~i~~~~~l~~l~--~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  290 (297)
T PRK12871        223 WVTGFTALHFLA--AIFFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVS  290 (297)
T ss_pred             HHHHHHHHHHHH--HHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            654444333322  2233444444  3233444566677889999888888887744443  2444444433

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.97  E-value=6.1e-30  Score=238.58  Aligned_cols=273  Identities=18%  Similarity=0.131  Sum_probs=208.4

Q ss_pred             hHHHHhHHHHHHHHHHHchhhhHHHHHHH---HHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc
Q 015718           96 SFLNVFLKKFHALYRFMRAYACAGVIIAT---TSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVD  172 (402)
Q Consensus        96 ~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~---l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~D  172 (402)
                      +..+..+.++++|.|++|.+.++++.+.+   ....++|...  ...+. ..-+.++-++.+++++++|.+||+.|+|+|
T Consensus        55 s~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD  131 (353)
T KOG1381|consen   55 SLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLD  131 (353)
T ss_pred             hhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccch-hHHHHHhcccHHHhccCCceehhhhhhhhh
Confidence            44445556699999999999999998844   3455666431  11111 111223446779999999999999999999


Q ss_pred             ccCCC--CCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHH
Q 015718          173 KVNKP--YLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS  250 (402)
Q Consensus       173 r~nk~--~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~  250 (402)
                      ...+|  .||++||++|+++|+.+..+.+.+++.+...+|+....+ ...++.+.+.|+.      +||.++..+++.+.
T Consensus       132 ~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~l-g~~sl~~v~~ypl------~kr~TY~pq~vLgl  204 (353)
T KOG1381|consen  132 AKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIAL-GASSLALVITYPL------MKRFTYWPQLVLGL  204 (353)
T ss_pred             hhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHh-cccccccEEEeeh------hhhcchhHHHHHhh
Confidence            98665  899999999999999999999999999999999766543 3566777888996      89999988877753


Q ss_pred             --hhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHH
Q 015718          251 --LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSV  328 (402)
Q Consensus       251 --~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~  328 (402)
                        +||.+.  |     ..++.|..   .+...+.+++...+|++.++++|++||.++|.+.|+|+.+.++|++.-.|+. 
T Consensus       205 tfnwGAll--G-----w~A~~g~~---~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~-  273 (353)
T KOG1381|consen  205 TFNWGALL--G-----WCALKGSL---SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLS-  273 (353)
T ss_pred             hcchhhhh--c-----chhhcCcc---ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHh-
Confidence              344332  2     23445543   2333455677778899999999999999999999999999999998766665 


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-HHHHHHH
Q 015718          329 SMLSIAYGAAVVVGASSPFLANKLITIIGHGILASIFWLRVRAVDLSDNASILSFYM-FIWKLYY  392 (402)
Q Consensus       329 ~l~~~a~~~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~~~~~~f~~-~iw~l~~  392 (402)
                      .+-......+..+|+.++..|   .|+.++++.+..|.+|...+|++|+++|..+|. +.|.+++
T Consensus       274 gf~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli  335 (353)
T KOG1381|consen  274 GFGAAQIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLI  335 (353)
T ss_pred             hhhHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHH
Confidence            566566667888999999998   445568888999999999999999998866654 4555544

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.96  E-value=4.1e-27  Score=232.36  Aligned_cols=231  Identities=13%  Similarity=0.039  Sum_probs=172.7

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCC----CCC
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNK----PYL  179 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk----~~R  179 (402)
                      +++.|++++||++...+.+|++.|.++|.....++++.   ..+++++++++++.++|.+|||+|.+.|..++    +.|
T Consensus         2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~   78 (317)
T PRK13387          2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGN   78 (317)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcc
Confidence            36789999999999999999999988885333344432   25567788889999999999999987655543    689


Q ss_pred             cccccccChHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718          180 PLASGEISMGTGIAITLASALMSLA----YAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (402)
Q Consensus       180 PlasG~is~~~a~~~~~~~~~~~l~----la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l  255 (402)
                      ++++|.+|++++...+.++++++++    +.+..|+ .++...+++++.++.||.  ||+++||++ +|++..++..|..
T Consensus        79 ~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~-~~l~igl~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~  154 (317)
T PRK13387         79 GIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSW-LLLVIGLICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFG  154 (317)
T ss_pred             hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHH
Confidence            9999999999999988888877776    4455564 444445677888999995  899999999 5887776666655


Q ss_pred             hHHHHHHHHHHHHhcCCCccCcHHH--------------------HHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceeh
Q 015718          256 TQFPVYVHIQKYVLGRPLEIFTRPL--------------------MFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLS  315 (402)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~--------------------~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlp  315 (402)
                      ...+.+..     ....   .+...                    ++..+.+.+.+...+++||++|+|+|++.|+||+|
T Consensus       155 ~v~g~~yv-----~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~  226 (317)
T PRK13387        155 IFLLAVYI-----NTNT---ITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLV  226 (317)
T ss_pred             HHHHHHHH-----hcCC---CchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeee
Confidence            54444322     1111   11111                    12444566667778999999999999999999999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Q 015718          316 VMLGKERVFRLSVSMLSIAYGAAVVVGASSPFLA  349 (402)
Q Consensus       316 v~lG~k~a~~l~~~l~~~a~~~~i~~g~~~~~~~  349 (402)
                      +++|+|+++++...+..++|+..+........+|
T Consensus       227 v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~  260 (317)
T PRK13387        227 YYIGREKGVVLFAILFYASYLAIAVIVLMGYISP  260 (317)
T ss_pred             eeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999998999888886665544333333

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=7.7e-26  Score=219.20  Aligned_cols=218  Identities=20%  Similarity=0.181  Sum_probs=153.6

Q ss_pred             HHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH-HHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718          105 FHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVP-AVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (402)
Q Consensus       105 l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~-~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas  183 (402)
                      +|.+++++||.+|+...+|+..|+++|. +.++  +.    +++..++ ....+.+.|.+|||+|.|.|+.|+|.+.. .
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~-~~~~--~~----~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~   72 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAG-GEID--WL----FVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E   72 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHC-CCCC--hH----HHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence            3678999999999999999998988883 3332  22    2233333 23344444677999999999999775443 5


Q ss_pred             cccChHHHHHHHHHHHHH-----HHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHH
Q 015718          184 GEISMGTGIAITLASALM-----SLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQF  258 (402)
Q Consensus       184 G~is~~~a~~~~~~~~~~-----~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~l  258 (402)
                      |.+++++..........+     ++.+....+ +.++....++++.++.||.  ||.|+|++++.|+++..+.......+
T Consensus        73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~-~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~  149 (282)
T PRK13105         73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGS-WASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALY  149 (282)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHH
Confidence            889998874433333322     222333224 4444445677888999995  89999999999886554322111222


Q ss_pred             HHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHH
Q 015718          259 PVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAA  338 (402)
Q Consensus       259 g~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~  338 (402)
                      |.+     .+ ++.   .+...++....+.+|+.+++.+||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.
T Consensus       150 G~~-----~~-~~~---~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~  220 (282)
T PRK13105        150 GLV-----LA-GAP---FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM  220 (282)
T ss_pred             HHH-----Hh-hcc---ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence            222     22 332   344556666778889999999999999999999999999999999999999999998888877


Q ss_pred             HHHH
Q 015718          339 VVVG  342 (402)
Q Consensus       339 i~~g  342 (402)
                      +..+
T Consensus       221 ~~~~  224 (282)
T PRK13105        221 LALP  224 (282)
T ss_pred             HHHH
Confidence            7554

>PLN02776 prenyltransferase

Probab=99.95  E-value=1.5e-25  Score=221.17  Aligned_cols=260  Identities=15%  Similarity=0.032  Sum_probs=182.0

Q ss_pred             HHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC--CCcccccccCh
Q 015718          111 FMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--YLPLASGEISM  188 (402)
Q Consensus       111 l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~--~RPlasG~is~  188 (402)
                      ++||.....+++..+.|+++|.+...+  +.   .+++.+++..++++++|++||++|+|+|++|+|  +||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~--~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAID--LP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            367888888888888899888543333  21   245677899999999999999999999999774  99999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHHHHH
Q 015718          189 GTGIAITLASALMSLAY-AVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKY  267 (402)
Q Consensus       189 ~~a~~~~~~~~~~~l~l-a~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~  267 (402)
                      ++|+.+++++.++++.+ ++.+|+.+..++.+..++....|+.      +||++.+. ..++...|.++++..|    .+
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw----~A  144 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGW----AA  144 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHH----HH
Confidence            99999999999988854 5667876665543333444678994      89999765 4555555544443333    34


Q ss_pred             HhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhh--cHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015718          268 VLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVML--GKERVFRLSVSMLSIAYGAAVVVGASS  345 (402)
Q Consensus       268 v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~l--G~k~a~~l~~~l~~~a~~~~i~~g~~~  345 (402)
                      +.|+    ++...+++++.+.+|+..+.....+.|.|||+++|++++|+.-  |++.++.+....+.+....++..+.. 
T Consensus       145 vtg~----~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g-  219 (341)
T PLN02776        145 ASGQ----LDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWG-  219 (341)
T ss_pred             HcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            5554    4566677888899999988888899999999999999999976  45555554433332222222222111 


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHH
Q 015718          346 PFLANKLITIIGHGILASIFWLRVRAVDLSDN-ASILSFYMFIWKLYYA  393 (402)
Q Consensus       346 ~~~~~~~~~~~g~~i~a~~l~~~~~~~d~~~~-~~~~~f~~~iw~l~~~  393 (402)
                      ..++  .++.++.++.+..+.+.++..+.+|+ ...+.|+.+++++...
T Consensus       220 ~~~~--~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~~l  266 (341)
T PLN02776        220 VTSS--PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLPAF  266 (341)
T ss_pred             hhhH--HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence            1222  35556666666667777777755554 4667788888886543

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.95  E-value=3.4e-25  Score=215.50  Aligned_cols=222  Identities=17%  Similarity=0.127  Sum_probs=168.5

Q ss_pred             chhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--cccc--CCCCCcccccccCh
Q 015718          113 RAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV--NKPYLPLASGEISM  188 (402)
Q Consensus       113 Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~--nk~~RPlasG~is~  188 (402)
                      ||+++..++.|++.|.++|.... .+++.   ..++++++.++++.++|.+|||+|.+  .|+.  .+|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~---~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWL---VALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999998885432 45443   25677888999999999999999974  3543  35789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH----Hhch-----HHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHH
Q 015718          189 GTGIAITLASALMSLAYAV----MIRS-----PPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (402)
Q Consensus       189 ~~a~~~~~~~~~~~l~la~----~l~~-----~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg  259 (402)
                      +++...+.+++++++.++.    ..++     +++++..+++++.+++||.  ||+++|++++ |++..++..|.+...|
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~gL-GE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAGL-GDISVLVFFGPLAVLG  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCch-HHHHHHHHHHHHHHHH
Confidence            9999988777776655543    3342     1444444567778899995  8999999985 7777777777666655


Q ss_pred             HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  339 (402)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i  339 (402)
                      .+.     ++.+   .++...++..+...+.+.+++.+||++|+|+|++.|+||+|+++|+|+++++...+...+|.+.+
T Consensus       154 ~~y-----vq~~---~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~  225 (284)
T TIGR00751       154 TQY-----LQAH---RVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF  225 (284)
T ss_pred             HHH-----HhcC---CCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence            443     2222   24555555555677778889999999999999999999999999999999999898888888766


Q ss_pred             HHHHhcCcch
Q 015718          340 VVGASSPFLA  349 (402)
Q Consensus       340 ~~g~~~~~~~  349 (402)
                      ........+|
T Consensus       226 ~~~~~~~~p~  235 (284)
T TIGR00751       226 VFMLATPISW  235 (284)
T ss_pred             HHHHHhhchH
Confidence            6544444444

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02922 prenyltransferase

Probab=99.95  E-value=6.5e-25  Score=216.21  Aligned_cols=239  Identities=18%  Similarity=0.202  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--ccccCCCCC
Q 015718          102 LKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKPYL  179 (402)
Q Consensus       102 ~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~nk~~R  179 (402)
                      .++++.|++.+||+++...+.|++.|.++|......+++.   ..+++++++++++.++|.+|||+|.+  .|+.++..+
T Consensus        12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~   88 (315)
T PLN02922         12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV   88 (315)
T ss_pred             ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence            4568889999999999999999999988886443445543   25678899999999999999999965  677432221


Q ss_pred             cccccccChHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718          180 PLASGEISMGTGIAITLASALMSLAYAVMI----RSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (402)
Q Consensus       180 PlasG~is~~~a~~~~~~~~~~~l~la~~l----~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l  255 (402)
                      .-..|  |+++....+.+++++++...+.+    +.|.+++..+++++.+++||.  ||+++|++++ |++..++.+|.+
T Consensus        89 ~~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l  163 (315)
T PLN02922         89 VNLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPL  163 (315)
T ss_pred             CCccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHH
Confidence            12234  89999888777776665322221    235555555678888999995  8999999997 666666666766


Q ss_pred             hHHHHHHHHHHHHhcCC-C--ccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHH
Q 015718          256 TQFPVYVHIQKYVLGRP-L--EIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLS  332 (402)
Q Consensus       256 ~~lg~~~~~~~~v~g~~-~--~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~  332 (402)
                      +..+.|.. ++...+.. .  ..++...++..+.+.+++.+.+++||++|+|+|++.|+||+|+++|+|+++++...+..
T Consensus       164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~  242 (315)
T PLN02922        164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence            65655542 11000010 0  01244455666778888889999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhcCcch
Q 015718          333 IAYGAAVVVGASSPFLA  349 (402)
Q Consensus       333 ~a~~~~i~~g~~~~~~~  349 (402)
                      .+|...+........+|
T Consensus       243 ~~y~~~i~~v~~~~~p~  259 (315)
T PLN02922        243 LLYSLLAALGLLKALPL  259 (315)
T ss_pred             HHHHHHHHHHHHhhhhH
Confidence            89987766655444443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=1.1e-25  Score=214.29  Aligned_cols=188  Identities=26%  Similarity=0.397  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccc--CCCCCcccccccChHHHHHHHHH
Q 015718          120 VIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKV--NKPYLPLASGEISMGTGIAITLA  197 (402)
Q Consensus       120 ~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~--nk~~RPlasG~is~~~a~~~~~~  197 (402)
                      ...+++.|...+.+...+  +.   .....++++++.+.++|.+||+.|.|+|+.  |||+||+++|+++++++...+.+
T Consensus         4 ~~~~~l~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASGGPFN--WP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHcCCCC--HH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            345555554444332222  22   234455666789999999999999999999  89999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHHHHHHhcCCCccCc
Q 015718          198 SALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFT  277 (402)
Q Consensus       198 ~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~  277 (402)
                      +.++++.+++..+++.+.+. +++.+.+++||   ||+|+||++++++++.++.++..+.++++.      .+..   .+
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~-~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~  145 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLIL-LLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGD---PP  145 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHH-HHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCc---cc
Confidence            99999999988887655444 55666679999   788999999999998887666554444332      2221   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHH
Q 015718          278 RPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFR  325 (402)
Q Consensus       278 ~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~  325 (402)
                      .+.++......++.......+|++|+|+|++.|+||+|+++|+++++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            334444444566667777888999999999999999999999999887

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.94  E-value=8.2e-25  Score=214.42  Aligned_cols=233  Identities=14%  Similarity=0.091  Sum_probs=176.0

Q ss_pred             HhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--ccccCCC
Q 015718          100 VFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNKP  177 (402)
Q Consensus       100 ~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~nk~  177 (402)
                      ...++++.|++.+||+++..++.|++.|.++|.....++++.   ..++++++..+.+.++|.+|||+|.+  .|+. ++
T Consensus         7 ~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~   82 (304)
T PRK07419          7 MSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD---QFITFLLAAILILAWENLSNDVFDADTGIDKN-KF   82 (304)
T ss_pred             CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc
Confidence            345678889999999999999999999988885433455543   25678889999999999999999976  6774 22


Q ss_pred             CCcccccccChHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhh
Q 015718          178 YLPLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (402)
Q Consensus       178 ~RPlasG~is~~~a~~~~~~~~~~~l~la----~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g  253 (402)
                      . ...++..++++....+.+++++++.++    +..| |+++...+++++.+++||.  ||+++|++++ |++..++.+|
T Consensus        83 ~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g-~~~l~ig~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G  157 (304)
T PRK07419         83 H-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD-WTVLGLVLLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFG  157 (304)
T ss_pred             c-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHhheccC--CCcccCCCCc-hHHHHHHHHH
Confidence            2 233444568888887777776666544    3345 4555555677888999995  8999999996 7777777777


Q ss_pred             HHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHH
Q 015718          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (402)
Q Consensus       254 ~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~  333 (402)
                      .++..+.+..     +..   .++...++..+.+.+.+....++||++|+|+|++.|+||+|+++|+|++++++..+...
T Consensus       158 ~l~v~g~~yv-----~t~---~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~  229 (304)
T PRK07419        158 PLAVAAALYS-----QTP---SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGL  229 (304)
T ss_pred             HHHHHHHHHH-----hcC---CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHH
Confidence            6666655432     222   24555566666777888889999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhcCcch
Q 015718          334 AYGAAVVVGASSPFLA  349 (402)
Q Consensus       334 a~~~~i~~g~~~~~~~  349 (402)
                      +|...+........+|
T Consensus       230 ay~~~i~~v~~g~~p~  245 (304)
T PRK07419        230 IYALELLPVLLGFWPW  245 (304)
T ss_pred             HHHHHHHHHHHhhhHH
Confidence            8987766555443444

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=3e-25  Score=216.15  Aligned_cols=223  Identities=20%  Similarity=0.205  Sum_probs=151.7

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccc
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLAS  183 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlas  183 (402)
                      -+++++++.|+.+..........+..  .....+...     ....+++.++.+.++|.+||+.|+|+|+.|+|+||.++
T Consensus         3 ~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s   75 (285)
T PRK12872          3 LLFAFLKLFRYGNLLIAALGQSLVYM--ASLLLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFS   75 (285)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHH
Confidence            46789999999877665554433211  100111111     22455677888999999999999999999999999986


Q ss_pred             cccChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCcccc-ccccccchhHHHHHHhhhHHhHHHHH
Q 015718          184 GEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLL-RWKGNSFLAAFCMVSLNGLLTQFPVY  261 (402)
Q Consensus       184 G~is~~~a~~~~~~~~~~~l~la-~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~-rlKr~~~l~~l~~~~~~g~l~~lg~~  261 (402)
                      ++...+.+..+..+...+++.+. ...|++.+. ..+++.++++.||.  ||. ++||.+.+++++++..+|..+.++.+
T Consensus        76 ~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~  152 (285)
T PRK12872         76 ETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFAL-IFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGV  152 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHH
Confidence            55444444444444444444442 233554443 34556677999995  444 58999999999998888765544322


Q ss_pred             HHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHHHH
Q 015718          262 VHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVV  341 (402)
Q Consensus       262 ~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~  341 (402)
                      .     ..+.   .++...++..+..+++.+.++.++|++|+|+|+++|+||+|+++|+|++++++..+..+.+...+..
T Consensus       153 ~-----~~~~---~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~  224 (285)
T PRK12872        153 Y-----YYQL---TIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILG  224 (285)
T ss_pred             H-----hccc---ccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            1     1122   1233344445556677788899999999999999999999999999999999988887777766654


Q ss_pred             HHh
Q 015718          342 GAS  344 (402)
Q Consensus       342 g~~  344 (402)
                      ...
T Consensus       225 ~~~  227 (285)
T PRK12872        225 VYT  227 (285)
T ss_pred             HHH
Confidence            443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.94  E-value=1e-24  Score=211.72  Aligned_cols=221  Identities=19%  Similarity=0.291  Sum_probs=142.4

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCC-CchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCCCC
Q 015718          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLAD-LTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYL  179 (402)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~-~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~R  179 (402)
                      .++.++.++++.||++|..+..|.+.|.++|....++ +++. +..++..++  +..+...|++||++|+|+||.|+|++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-~~~ll~~~~--i~~Nl~~y~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-AVALFAYFL--FPANVFLYGVNDVFDADTDELNPKKD   80 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-HHHHHHHHH--HHHHHHHhcchhhhhhhccccCCCcc
Confidence            4567888999999999999999999999998654322 2321 111111111  23445667799999999999987755


Q ss_pred             c---ccccccChHHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHH
Q 015718          180 P---LASGEISMGTGIAI-TLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLL  255 (402)
Q Consensus       180 P---lasG~is~~~a~~~-~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l  255 (402)
                      .   ++   .+.+.+... ......+++.+.+..++... ..++.++++.+.||.  ||+|+|++++.+..+.+..  .+
T Consensus        81 ~~r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~-~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~--~~  152 (282)
T PRK12875         81 REREVR---YRGDRRVLVAVALSGALALAFLLVLPPAAW-PALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLY--IL  152 (282)
T ss_pred             CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHH--HH
Confidence            3   33   111221111 12222333444334343222 233567788999995  8999999998776543221  11


Q ss_pred             hHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHH
Q 015718          256 TQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY  335 (402)
Q Consensus       256 ~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~  335 (402)
                      +.++.|    ....|.    .+...  +.+..++|+.+.+++||+||+|+|++.|+||+|+++|+|++++++..+..++.
T Consensus       153 ~~~~~y----~~~tg~----~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~  222 (282)
T PRK12875        153 PGVAAY----ALVSGS----LPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAA  222 (282)
T ss_pred             HHHHHH----HHHcCC----CcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHH
Confidence            222222    112232    23322  33445789999999999999999999999999999999999988877777776


Q ss_pred             HHHHHHH
Q 015718          336 GAAVVVG  342 (402)
Q Consensus       336 ~~~i~~g  342 (402)
                      .+.+..+
T Consensus       223 ~~~~~~~  229 (282)
T PRK12875        223 AAFAAVD  229 (282)
T ss_pred             HHHHHHH
Confidence            6666655

>PRK08238 hypothetical protein; Validated

Probab=99.94  E-value=8.2e-26  Score=233.94  Aligned_cols=222  Identities=18%  Similarity=0.245  Sum_probs=170.6

Q ss_pred             cccc-CCCceEecCCccccccccCCCCCCcccchhHHHHhHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchH
Q 015718           63 ASSR-NCKPFNSHRAPVTLQDGYASKSEDDDHSNSFLNVFLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPA  141 (402)
Q Consensus        63 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~  141 (402)
                      ..|+ ++++++||++++.++.+++.+     .++..+++.+..+++|++++|||||.+|.+.++ +.+++ +.+.+.  .
T Consensus       153 p~~~~A~~av~Vn~~~~l~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a-~~~~~~--~  223 (479)
T PRK08238        153 PVWAAARRAIVVGASPGVARAARALG-----PVERVFPPRPARLRTWLKALRVHQWAKNLLVFV-PLLAA-HQFGDL--Q  223 (479)
T ss_pred             HHHHhCCCeEEECCCHHHHHHHHHcC-----CcceecCCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHh-cccCCh--H
Confidence            7899 999999999998777776444     677778888899999999999999999999876 44544 444332  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCccccccC--CCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 015718          142 YFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVI  219 (402)
Q Consensus       142 ~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n--k~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~  219 (402)
                      .+...++++++++++++++|++||++|+|+||+|  ||+||+|||++|+++|+.++.+++++|+.+++.+|+ .+...++
T Consensus       224 ~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~-~~~~~~~  302 (479)
T PRK08238        224 ALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGP-AFLLVLL  302 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH
Confidence            2334667888999999999999999999999997  789999999999999999999999999999998886 4444556


Q ss_pred             HHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhh
Q 015718          220 AWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKD  299 (402)
Q Consensus       220 ~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~d  299 (402)
                      .+++++++||.     ++||+++++++++++..+.-+..|+      ...+.     +.+.+++. +..++.....+.|.
T Consensus       303 ~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~------~a~~~-----~~s~wll~-~~~~~~l~la~~KR  365 (479)
T PRK08238        303 AYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGA------AAIGV-----ALSFWLLA-FSMFFFLSLALVKR  365 (479)
T ss_pred             HHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHH------HHhcc-----CHHHHHHH-HHHHHHHHHHHHHh
Confidence            78888999996     6999999999888754432222221      12222     33334332 22233445668899


Q ss_pred             hcChhhhhhcCC
Q 015718          300 LHDVDGDKKFGI  311 (402)
Q Consensus       300 i~D~egD~~~G~  311 (402)
                      ..|.++++..|.
T Consensus       366 ~~El~~~~~~~~  377 (479)
T PRK08238        366 YTELRRALQRGK  377 (479)
T ss_pred             HHHHHHHHhcCC
Confidence            999998888885

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.93  E-value=2.1e-23  Score=203.02  Aligned_cols=223  Identities=13%  Similarity=0.085  Sum_probs=166.0

Q ss_pred             HHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--ccccCC--CCCcccc
Q 015718          108 LYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKVNK--PYLPLAS  183 (402)
Q Consensus       108 ~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~nk--~~RPlas  183 (402)
                      |++.+||+++..++.|++.|.++|.....++++.   ..++++++..+.+.++|.+|||+|.+  .|+.+.  +.|..  
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~---~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~--   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD---RFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLT--   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCccccc--
Confidence            6789999999999999999998885433345543   24567789999999999999999965  477422  23333  


Q ss_pred             cccChHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhHHH
Q 015718          184 GEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQFP  259 (402)
Q Consensus       184 G~is~~~a~~~~~~~~~~~l~la----~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~lg  259 (402)
                        .++++....+.++.++++.++    +..+ |+++...+++++.++.||.  ||+++|++++ |++..++.+|.+...+
T Consensus        77 --~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g  150 (285)
T TIGR02235        77 --GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAA  150 (285)
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHH
Confidence              356777766666665555444    3344 4555555678888999995  8999999996 7777777777666655


Q ss_pred             HHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHHHHH
Q 015718          260 VYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYGAAV  339 (402)
Q Consensus       260 ~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i  339 (402)
                      .+.     ++..   .+++..++..+..++.+.+..++||++|+|+|++.|+||+|+++|+|++.++...+...+|.+.+
T Consensus       151 ~~y-----vqt~---~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i  222 (285)
T TIGR02235       151 ALY-----AQSQ---SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLL  222 (285)
T ss_pred             HHH-----HhCC---cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHH
Confidence            543     2222   24666666666778888889999999999999999999999999999999999999988998766


Q ss_pred             HHHHhcCcch
Q 015718          340 VVGASSPFLA  349 (402)
Q Consensus       340 ~~g~~~~~~~  349 (402)
                      ........+|
T Consensus       223 ~~v~~~~~p~  232 (285)
T TIGR02235       223 IAVIGGFLPW  232 (285)
T ss_pred             HHHHHhhhHH
Confidence            5544433444

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.93  E-value=2.9e-23  Score=200.02  Aligned_cols=231  Identities=16%  Similarity=0.152  Sum_probs=170.1

Q ss_pred             HHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCcc--cccc----CCC
Q 015718          104 KFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVE--VDKV----NKP  177 (402)
Q Consensus       104 ~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e--~Dr~----nk~  177 (402)
                      +.+.|++++|||++...+.|++.|.++|......+++   +..+++++++.+++..+|..|||.|.+  .|..    .+-
T Consensus         7 ~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~   83 (303)
T COG1575           7 KTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQ   83 (303)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccc
Confidence            4478999999999999999999999998654333432   236678899999999999999999964  5643    233


Q ss_pred             CCcccccccChHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhh
Q 015718          178 YLPLASGEISMGTGIAITLASALMSLAYA----VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (402)
Q Consensus       178 ~RPlasG~is~~~a~~~~~~~~~~~l~la----~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g  253 (402)
                      ++-+...+++++..+.+.+.++..+.+++    ...++ .+++...++++.++.|+.  +|+++.+.++ |++..+...|
T Consensus        84 ~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~-~~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG  159 (303)
T COG1575          84 SGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDW-LVLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFG  159 (303)
T ss_pred             cceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHH
Confidence            45555566777777776666555544443    33343 455556788888999995  7888999886 6666666667


Q ss_pred             HHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHH
Q 015718          254 LLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSI  333 (402)
Q Consensus       254 ~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~  333 (402)
                      .+...+.+.     ++.+   .+++..++..+.+.+.+...+..|+++|+|+|++.|++|+|+++|+++++.+...++..
T Consensus       160 ~l~v~g~~y-----iqt~---~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~  231 (303)
T COG1575         160 PLIVLGAYY-----IQTG---RLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHH-----Hhcc---cchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence            655544442     2222   24555555566677777888999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhcCcch
Q 015718          334 AYGAAVVVGASSPFLA  349 (402)
Q Consensus       334 a~~~~i~~g~~~~~~~  349 (402)
                      +|.+.++........|
T Consensus       232 a~l~~~~~~i~~~~~~  247 (303)
T COG1575         232 AYLAIVIFVILGLFPV  247 (303)
T ss_pred             HHHHHHHHHHHHhchH
Confidence            8887666544445544

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=7.8e-24  Score=203.44  Aligned_cols=268  Identities=16%  Similarity=0.151  Sum_probs=186.6

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC--C
Q 015718          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y  178 (402)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~--~  178 (402)
                      .+.++|+|+++++|..+..+.+..+.|+++|.....  ++.   .++++.++..++..+++++|+++|+|+|++.+|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~--~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSI--NPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccc--cHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            557899999999999999999999999999975222  222   256788899999999999999999999999765  9


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhH
Q 015718          179 LPLASGEISMGTGIAITLASALMSLAYA-VMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (402)
Q Consensus       179 RPlasG~is~~~a~~~~~~~~~~~l~la-~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~  257 (402)
                      ||+++|++++++++.++.++.++|+.+. +..|+.+-.+.++..++....||.     .+||++... ++++...|..++
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~N-iviGg~aGa~Pp  162 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQN-IVIGGFAGAMPP  162 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCcccc-eeeeeccccccc
Confidence            9999999999999999999999999887 667765555555566777889997     589998754 344444454443


Q ss_pred             HHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHHH-
Q 015718          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAYG-  336 (402)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~~-  336 (402)
                      +..|    .++.|+    .+...+++.+++++|+..+-..-++.-.||.+++|+..+|++-|++.+++.. ..+.+... 
T Consensus       163 liGw----aAvtg~----~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I-~~y~~~l~~  233 (304)
T COG0109         163 LIGW----AAVTGS----ISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQI-LLYTLALAP  233 (304)
T ss_pred             ccee----eeeeCC----CCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHH-HHHHHHHHH
Confidence            3222    345665    3555666777888898666555567777888999999999999999888874 33333322 


Q ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH-cCCCC-hHHHHHHHHHHHHHH
Q 015718          337 AAVVVGASSPFLANKLITIIGHGILASIFWLRVRA-VDLSD-NASILSFYMFIWKLY  391 (402)
Q Consensus       337 ~~i~~g~~~~~~~~~~~~~~g~~i~a~~l~~~~~~-~d~~~-~~~~~~f~~~iw~l~  391 (402)
                      ..+........+|   .|.+-..++...+++...+ ..-+| +.+.+.|..++-++.
T Consensus       234 ~sl~~~~~g~~g~---~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~  287 (304)
T COG0109         234 VSLLLALLGYVGY---LYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLA  287 (304)
T ss_pred             HHHHHHHhccchh---HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            2222222111222   3444444444444444332 22233 446677766655443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=8.8e-23  Score=198.39  Aligned_cols=175  Identities=21%  Similarity=0.189  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCC-
Q 015718          153 AVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQ-  231 (402)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~-  231 (402)
                      ..+...++|++||++|+|+|++|||+||.+    +++.+..+..+..++|+.+++..|+ .+ ++ +++.+.++.||.+ 
T Consensus        67 ~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~-~l-l~-ll~~l~g~lYS~Gl  139 (307)
T PRK13591         67 GGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGM-LL-LA-FLPFITGYLYSKGI  139 (307)
T ss_pred             HHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhH-HH-HH-HHHHHHHHHhcCCC
Confidence            345677899999999999999999999987    7888999999999999999998885 33 22 4666779999953 


Q ss_pred             -ccc--cccccccchhHHHHHHhhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhh
Q 015718          232 -LPL--LRWKGNSFLAAFCMVSLNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKK  308 (402)
Q Consensus       232 -lpp--~rlKr~~~l~~l~~~~~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~  308 (402)
                       .+|  +|+|+.+.+|++.++..+|.....+.    +. ..+.    . .......++.....++++.+||++|+|||++
T Consensus       140 k~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~-~~~~----~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~  209 (307)
T PRK13591        140 KIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS-YCGS----L-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTL  209 (307)
T ss_pred             CCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh-hhhh----H-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Confidence             224  48899999999999887775332110    00 0111    0 1111111112222256778999999999999


Q ss_pred             cCCceehhhhcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015718          309 FGIKTLSVMLGKERVFRLSVSMLSIAYGAAVVVGAS  344 (402)
Q Consensus       309 ~G~~Tlpv~lG~k~a~~l~~~l~~~a~~~~i~~g~~  344 (402)
                      .|+||+|+++|+++++++...+..+++++.+.....
T Consensus       210 ~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~  245 (307)
T PRK13591        210 AGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF  245 (307)
T ss_pred             cCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888888765554443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.91  E-value=1.7e-22  Score=194.83  Aligned_cols=176  Identities=12%  Similarity=0.146  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 015718          145 GLMEALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFV  224 (402)
Q Consensus       145 ~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l  224 (402)
                      +.+++++..++...++|++||++|+|+||+|+|+||+|||++|+++++.++.++.++++.++... ....     ...+.
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-~i~i-----~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-MNNV-----GWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHH-----HHHHH
Confidence            45566667778889999999999999999999999999999999999999988877777766543 1111     12223


Q ss_pred             Hhhc-----cCCccccccccccchhHHHHHHhhhHHh--HHHHHHH-HHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHH
Q 015718          225 GTAY-----SVQLPLLRWKGNSFLAAFCMVSLNGLLT--QFPVYVH-IQKYVLGRPLEIFTRPLMFATAFISCFCVVIAF  296 (402)
Q Consensus       225 ~~~Y-----s~~lpp~rlKr~~~l~~l~~~~~~g~l~--~lg~~~~-~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~  296 (402)
                      .+.|     +.     ++|+.++.+|+.++...|..+  .++++.. .+....|.+  ......+++.+..++.+.++++
T Consensus       121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~--~~~~~~~~l~l~afl~~l~rEI  193 (299)
T PRK13592        121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLP--LLSLPTVLLAFTMYFPSLIWEV  193 (299)
T ss_pred             HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccc--hhhHHHHHHHHHHHHHHHHHHH
Confidence            3444     64     689999999999887665433  2222221 011112221  1111112333444555688999


Q ss_pred             HhhhcChhhhhhcCCceehhhhcHHHHHHHHHHHHHHHH
Q 015718          297 IKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSMLSIAY  335 (402)
Q Consensus       297 i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l~~~a~  335 (402)
                      .+|++| |||++ |.+|+|+++|.|++.++..++..+..
T Consensus       194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v  230 (299)
T PRK13592        194 CRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDI  230 (299)
T ss_pred             HHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHH
Confidence            999999 88886 59999999999999888766554443

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=1e-21  Score=191.53  Aligned_cols=143  Identities=20%  Similarity=0.297  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccC--CCC
Q 015718          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVN--KPY  178 (402)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~n--k~~  178 (402)
                      ..+++++|++++|||+|.++.+.+..+ +++.. ..+.  ..+...++++++++++++++|++||++|+|+||+|  ||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~-~~~~--~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGN-LLNP--GALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHh-hccc--chHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            345788999999999999999877643 44422 2221  11223556777888899999999999999999995  789


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhh
Q 015718          179 LPLASGEISMGTGIAITLASALMSLAYAVMIRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNG  253 (402)
Q Consensus       179 RPlasG~is~~~a~~~~~~~~~~~l~la~~l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g  253 (402)
                      ||+|||++|+++++.++.++.++|+.+++.+|+..+.. .+.++++.++||.     ++||++.+++++++...+
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~  151 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFV  151 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHH
Confidence            99999999999999999999999999998888654443 4677888899996     689999999988865433

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.35  E-value=1.9e-12  Score=124.52  Aligned_cols=208  Identities=15%  Similarity=0.152  Sum_probs=138.0

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCC--C
Q 015718          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQTLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDVEVDKVNKP--Y  178 (402)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~--~  178 (402)
                      ..+..+.|+|+.+|.--+..++....|+++|...+ +++     .+++..++..++.+++|.+||+++.+.|++.+|  +
T Consensus        90 p~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~-s~~-----~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~  163 (409)
T KOG1380|consen   90 PGKYARCYLELSKPRLTMLVVLTTMTGYALAPGPF-SFP-----TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQN  163 (409)
T ss_pred             CcchHHHHHHhcccceEEEEeeeccccccccccCC-Ccc-----hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcc
Confidence            34567899999999866655666667778875442 222     356778899999999999999999999999776  8


Q ss_pred             CcccccccChHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCccccccccccchhHHHHHHhhhHHhH
Q 015718          179 LPLASGEISMGTGIAITLASALMSLAYAVM-IRSPPFIWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVSLNGLLTQ  257 (402)
Q Consensus       179 RPlasG~is~~~a~~~~~~~~~~~l~la~~-l~~~~~~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~~~g~l~~  257 (402)
                      ||+++|++++.+|+.++.+....|..+..+ .|+..-.+...-.++.+.+|+      .+||..++... ++.+.|.+++
T Consensus       164 Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihiinTW-vGavVGAIPP  236 (409)
T KOG1380|consen  164 RPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHIINTW-VGAVVGAIPP  236 (409)
T ss_pred             cccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhhhhhH-HHHHhccCCc
Confidence            999999999999999988888877766543 675443333233355577888      37887654332 2223355554


Q ss_pred             HHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHH--HHHHhhhcChhhhhhcCCceehhhh---cHHHHHHHHHHHH
Q 015718          258 FPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVV--IAFIKDLHDVDGDKKFGIKTLSVML---GKERVFRLSVSML  331 (402)
Q Consensus       258 lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~--~~~i~di~D~egD~~~G~~Tlpv~l---G~k~a~~l~~~l~  331 (402)
                      +-.|    .+..|.    .+...+++..+...|.+-  ..+..+++  +|..+.|.+.+++.=   -++.+.+....++
T Consensus       237 LMGw----AAasg~----l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~np~l~rr~alr~s~a~~  305 (409)
T KOG1380|consen  237 LMGW----AAASGL----LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTNPGLCRRVALRYSLAFL  305 (409)
T ss_pred             cchh----hhhccC----CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeeccchhhHHHHHHHHHHh
Confidence            3223    223343    244456666677778754  23444444  456899999998853   3344445444433

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.18  E-value=3e-11  Score=111.40  Aligned_cols=231  Identities=14%  Similarity=0.141  Sum_probs=150.4

Q ss_pred             hHHHHHHHHHHHchhhhHHHHHHHHHHHHcccc--cCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccCc--cccccCC
Q 015718          101 FLKKFHALYRFMRAYACAGVIIATTSNSLLPVQ--TLADLTPAYFTGLMEALVPAVLMHIYVVAINQLSDV--EVDKVNK  176 (402)
Q Consensus       101 ~~~~l~~~~~l~Rp~~~~~~~l~~l~g~llA~~--~~~~~~~~~l~~~ll~~l~~~l~~~a~~~~Nd~~D~--e~Dr~nk  176 (402)
                      ...+.+.|+-..||.....++.|...|..+|..  ...|++  ... ..+..++.+..+.++|.+|.|+|.  .+|+...
T Consensus        57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~--l~~-~fl~a~avlavh~agnlvntyfdf~kgid~kka  133 (359)
T KOG4581|consen   57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFR--LAT-FFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKA  133 (359)
T ss_pred             HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchh--HHH-HHHHHhhheeeecccchhhhhhhhhhccccccc
Confidence            345678899999999999999999999999864  333432  222 334455667789999999999995  5888766


Q ss_pred             CCCcccccccChHHHHHHHHHHHHHHHHHH---HHhchHHH---HHHHHHHHHHHhhccCCccccccccccchhHHHHHH
Q 015718          177 PYLPLASGEISMGTGIAITLASALMSLAYA---VMIRSPPF---IWAVIAWIFVGTAYSVQLPLLRWKGNSFLAAFCMVS  250 (402)
Q Consensus       177 ~~RPlasG~is~~~a~~~~~~~~~~~l~la---~~l~~~~~---~~~l~~~~~l~~~Ys~~lpp~rlKr~~~l~~l~~~~  250 (402)
                      -+|.+...-+.+.+...++..+..+|...+   ..+++..+   .+..+.++--.++|+.+.   .+|...+ |.+++.+
T Consensus       134 ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggi---gfkyial-gdliili  209 (359)
T KOG4581|consen  134 DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGI---GFKYIAL-GDLIILI  209 (359)
T ss_pred             cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEeccc---ceEEEec-cCEEEEE
Confidence            789999888899999888888887765443   23443221   111223333456788543   5676654 3333323


Q ss_pred             hhhHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHhhhcChhhhhhcCCceehhhhcHHHHHHHHHHH
Q 015718          251 LNGLLTQFPVYVHIQKYVLGRPLEIFTRPLMFATAFISCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGKERVFRLSVSM  330 (402)
Q Consensus       251 ~~g~l~~lg~~~~~~~~v~g~~~~~~~~~~~~l~~~~~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~k~a~~l~~~l  330 (402)
                      ..|.+..+-.|. .+   .|..  .+.+  .-..+...+-+-++...|+.+|.|.||++|+-|+++.+|+..+-.++..+
T Consensus       210 ~fgpiavlfaf~-~q---~g~l--~~~~--l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~l  281 (359)
T KOG4581|consen  210 LFGPIAVLFAFA-IQ---TGHL--AIFP--LGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAML  281 (359)
T ss_pred             eechHHHHHHHH-Hh---cCce--eEEe--ehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHH
Confidence            334333221121 11   2321  1111  11111223334456678999999999999999999999999888888778


Q ss_pred             HHHHHHHHHHHHHhcC
Q 015718          331 LSIAYGAAVVVGASSP  346 (402)
Q Consensus       331 ~~~a~~~~i~~g~~~~  346 (402)
                      +.+.|.+..+.+.-+.
T Consensus       282 lf~py~lf~i~~~~~s  297 (359)
T KOG4581|consen  282 LFAPYLLFFIFALHCS  297 (359)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8788887777665544

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=90.21  E-value=0.99  Score=44.49  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHhhcccCccccccCCCCCcccccccChHHHHHH
Q 015718          149 ALVPAVLMHIYVVAINQLSDVEVDKVNKPYLPLASGEISMGTGIAI  194 (402)
Q Consensus       149 ~~l~~~l~~~a~~~~Nd~~D~e~Dr~nk~~RPlasG~is~~~a~~~  194 (402)
                      .-+...+..+..+..|++.|.|+|+.|+|+-+..  ++..+.+..+
T Consensus       181 ~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l  224 (303)
T COG1575         181 PSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKL  224 (303)
T ss_pred             HHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHH
Confidence            3344455666777899999999999998754432  3444445443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=86.70  E-value=2.5  Score=41.93  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=18.6

Q ss_pred             HhhcccCccccccCC-CCCcccccc
Q 015718          162 AINQLSDVEVDKVNK-PYLPLASGE  185 (402)
Q Consensus       162 ~~Nd~~D~e~Dr~nk-~~RPlasG~  185 (402)
                      .+||+-|.|.|+.+. +.-|..=|+
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~  221 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGE  221 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECH
Confidence            689999999999965 466665554

>PLN02922 prenyltransferase

Probab=86.36  E-value=3.2  Score=41.32  Aligned_cols=40  Identities=8%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhcccCccccccCCC-CCcccccccChHHHHHHH
Q 015718          153 AVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAIT  195 (402)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a~~~~  195 (402)
                      ..+..+.....||+-|+|+||.+++ .-|.   ++.++.+..+.
T Consensus       197 ~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~  237 (315)
T PLN02922        197 VGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVV  237 (315)
T ss_pred             HHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHH
Confidence            3455567778999999999999765 4443   34445554443

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=86.29  E-value=2.7  Score=41.82  Aligned_cols=46  Identities=20%  Similarity=0.255  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhhcccCccccccCCC-CCcccccccChHHHHHHHHHHH
Q 015718          151 VPAVLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAITLASA  199 (402)
Q Consensus       151 l~~~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a~~~~~~~~  199 (402)
                      +...+........||+-|.|+||.+.+ .-|.   ++.++.+..+..++.
T Consensus       196 lp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~  242 (317)
T PRK13387        196 LPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF  242 (317)
T ss_pred             HHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence            444555666678999999999999654 4444   344555555433333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=85.63  E-value=3.6  Score=40.72  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhhcccCccccccCCC-CCcccccccChHHHHHH
Q 015718          154 VLMHIYVVAINQLSDVEVDKVNKP-YLPLASGEISMGTGIAI  194 (402)
Q Consensus       154 ~l~~~a~~~~Nd~~D~e~Dr~nk~-~RPlasG~is~~~a~~~  194 (402)
                      .+........||+-|+|+||.+.+ .-|.   ++.++.+..+
T Consensus       184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l  222 (304)
T PRK07419        184 GLATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQL  222 (304)
T ss_pred             HHHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHH
Confidence            345566777999999999999654 4443   3444555444

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=85.00  E-value=4.4  Score=39.24  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             HHHHHHHHhhcccCccccccCC-CCCcccccc
Q 015718          155 LMHIYVVAINQLSDVEVDKVNK-PYLPLASGE  185 (402)
Q Consensus       155 l~~~a~~~~Nd~~D~e~Dr~nk-~~RPlasG~  185 (402)
                      +.......+||.-|+|.||.++ +.-|..-|+
T Consensus       172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            3444555789999999999854 566665555

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=83.54  E-value=10  Score=36.97  Aligned_cols=35  Identities=20%  Similarity=0.174  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHhhcccCcccccc-CCCCCcccccc
Q 015718          151 VPAVLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE  185 (402)
Q Consensus       151 l~~~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~  185 (402)
                      ++.++....-..+|++.|+|.|+. +.|.-|..-|+
T Consensus       167 ~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       167 LANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            344445555667899999999998 45677776675

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=83.43  E-value=9.6  Score=37.66  Aligned_cols=43  Identities=21%  Similarity=0.183  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhhcChhhhhhcCCceehhhhc---HHHHHHHHHHHH
Q 015718          288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLG---KERVFRLSVSML  331 (402)
Q Consensus       288 ~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG---~k~a~~l~~~l~  331 (402)
                      .+...+...+||+-|.|.|++.+. +=|+.-|   .+.+......+.
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~  109 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLF  109 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHH
Confidence            344455678999999999987763 3344444   444544443333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN00012 chlorophyll synthetase; Provisional

Probab=83.42  E-value=5.7  Score=40.57  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             HHHHHHHHHhhcccCcccccc-CCCCCcccccc
Q 015718          154 VLMHIYVVAINQLSDVEVDKV-NKPYLPLASGE  185 (402)
Q Consensus       154 ~l~~~a~~~~Nd~~D~e~Dr~-nk~~RPlasG~  185 (402)
                      ++...+....||+-|+|.|+. +++.-|..-|+
T Consensus       262 ~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        262 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            345556778999999999997 46777776665

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=82.01  E-value=22  Score=33.30  Aligned_cols=34  Identities=12%  Similarity=0.216  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhhcChhhhhhc-CCceehhhhcHHH
Q 015718          289 CFCVVIAFIKDLHDVDGDKKF-GIKTLSVMLGKER  322 (402)
Q Consensus       289 ~~~~~~~~i~di~D~egD~~~-G~~Tlpv~lG~k~  322 (402)
                      +.......+||+.|.|.|+.. +++.-|..-|+-+
T Consensus        34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            444566788999999999996 3455566555443

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=81.77  E-value=5.7  Score=39.42  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718          155 LMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (402)
Q Consensus       155 l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (402)
                      +...+....||+-|+|.||.. +|.-|..-|+
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~  231 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE  231 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence            344555789999999999985 5667765564

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=81.75  E-value=31  Score=33.72  Aligned_cols=51  Identities=16%  Similarity=0.088  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhhcccCccccccC-CCCCcccccccChHHHHHHHHHHHHHHHHHH
Q 015718          153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYA  206 (402)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~~~~~~l~la  206 (402)
                      ..+...+...+|++-|+|.|+.. ++.-|.   ++..+.+..+..++.+++..+-
T Consensus       174 ~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~  225 (282)
T PRK12875        174 GWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAF  225 (282)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHH
Confidence            34455566789999999999974 455554   3445556555555555444443

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=81.11  E-value=8.1  Score=37.86  Aligned_cols=55  Identities=9%  Similarity=0.090  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHhhcccCccccccC-CCCCcccccccChHHHHHHHHHHHHHHHHHHHHhc
Q 015718          153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGEISMGTGIAITLASALMSLAYAVMIR  210 (402)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~is~~~a~~~~~~~~~~~l~la~~l~  210 (402)
                      +.+...+...+||+-|.|.||.+ ++.-|.   ++..+.+..+..++.+++.++...++
T Consensus       169 ~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        169 FFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566789999999999985 444443   45567777776666666655444433

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=80.20  E-value=8.9  Score=37.08  Aligned_cols=32  Identities=13%  Similarity=0.034  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhhcChhhhhhcCCceehhhhcH
Q 015718          288 SCFCVVIAFIKDLHDVDGDKKFGIKTLSVMLGK  320 (402)
Q Consensus       288 ~~~~~~~~~i~di~D~egD~~~G~~Tlpv~lG~  320 (402)
                      .+...+-..+||+-|.|.|++. +++=|+.-|+
T Consensus        47 ~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         47 FFASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            3344556789999999999988 6777777774

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=80.04  E-value=5.9  Score=39.75  Aligned_cols=33  Identities=27%  Similarity=0.370  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHhhcccCccccccC-CCCCcccccc
Q 015718          153 AVLMHIYVVAINQLSDVEVDKVN-KPYLPLASGE  185 (402)
Q Consensus       153 ~~l~~~a~~~~Nd~~D~e~Dr~n-k~~RPlasG~  185 (402)
                      .++...+...+||+-|+|.|+.. ++.-|+.=|+
T Consensus       189 ~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~  222 (331)
T PRK12392        189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA  222 (331)
T ss_pred             HHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH
Confidence            34455566679999999999985 4566665454

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00