Citrus Sinensis ID: 015728

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MKEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEHHHccccEEEEccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccHHccccHHHHHHHHHHHHHHccccccccccEHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHcHcHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mkedrqmtiphlfrcpisldlftdpvtlctgqtydrSSIEKWLAagnltcpvtmqtlhdpsivpnhTLRHLINQWLqmgggqhfdpnylaTIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLresppasncliqlGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVhhnseasdaGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSkdalinnpnGVYALVKMVFRVsdhegsenAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV
Flexible Loop (DISEMBL)
MKEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVhhnseasdagVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRskwaeelkhv
Low Complexity Region (SEG)
MKEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCliqlgflplllkqlfgkAESKFSQVYVQFVEESLSCVQKLLLVGETeslnllneesKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVltqlllllqsqCSNRTKTKARMLLKLLRSKWAEELKHV
Disordered region (IsUnstruct)
*******TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK********
Disordered Region (DISOPRED)
*****QM**PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFG**********VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS**********AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ*S*RTKTKARMLLKLLRSK********
Disordered Region (DISEMBL)
********IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV
Disordered Region (DISPRO)
****RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHF*******IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
Q9FXA4	421	U-box domain-containing p	yes	no	0.957	0.912	0.307	2e-40
Q9LT79	421	U-box domain-containing p	no	no	0.947	0.902	0.304	1e-39
Q84TG3	411	E3 ubiquitin-protein liga	no	no	0.930	0.907	0.262	1e-27
Q9FLF4	420	U-box domain-containing p	no	no	0.940	0.897	0.274	7e-25
Q9C9A6	628	U-box domain-containing p	no	no	0.900	0.574	0.258	2e-22
Q058P4	448	U-box domain-containing p	no	no	0.882	0.790	0.272	4e-22
Q9LSA6	415	U-box domain-containing p	no	no	0.857	0.828	0.275	5e-22
Q9C7R6	729	U-box domain-containing p	no	no	0.927	0.510	0.248	9e-22
Q8GUG9	612	U-box domain-containing p	no	no	0.877	0.575	0.263	1e-21
Q9C8D1	431	U-box domain-containing p	no	no	0.922	0.858	0.237	2e-21

>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/407 (30%), Positives = 206/407 (50%), Gaps = 23/407 (5%)

Query: 4   DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
           D  + IP+ FRCPISLDL +DPVT+ TGQTYDR+SI+ W+A GN TCPVT   L D +++
Sbjct: 9   DLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLI 68

Query: 64  PNHTLRHLINQWLQMGGGQHFD-------PNYLATIDSLSTLKHSLQSHEATLETKLQIV 116
           PNHTLR LI +W         +       P    ++ SL +   ++     ++ ++   +
Sbjct: 69  PNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAI 128

Query: 117 QKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG 176
           +++  + R+S      +       +L++ LF   E+      +     +L     LL + 
Sbjct: 129 RRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLV---LLHMT 185

Query: 177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236
           ETE   + ++ S++     L    S  I+     L+E++++ + ++ +L   +   D + 
Sbjct: 186 ETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGA-KSMDLKLIISGSDSIF 244

Query: 237 REIISLVHH---NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTR---E 290
             ++ L+ +   +  A   G++A  ALC  +  R   +  GA   LI  ++    R   E
Sbjct: 245 EGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTE 304

Query: 291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD 350
           R LA      +E L  +     A   +   V  +VK + RVSD   +E A  +L+ +C  
Sbjct: 305 RGLAT-----VELLCRLPEGCAAFGEHALTVPLMVKTILRVSDR-ATEYAAGALLALCTA 358

Query: 351 SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397
             + R+EA  AG++TQLLLL+QS C+ R K KA+MLLKLLR  W ++
Sbjct: 359 EERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDD 405

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/407 (30%), Positives = 205/407 (50%), Gaps = 27/407 (6%)

Query: 4   DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHDPSI 62
           D  + IP+ FRCPISL+L  DPVT+CTGQTYDR+SIE W++ G N TCPVT   L D ++
Sbjct: 9   DLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL 68

Query: 63  VPNHTLRHLINQWLQMGGGQHFD-------PNYLATIDSLSTLKHSLQSHEATLETKLQI 115
           +PNHTLR LI +W         +       P    ++ +L +   ++     ++ ++   
Sbjct: 69  IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAA 128

Query: 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV 175
           ++++    R+S      +       +L+K LF +  S       + V ESL+ +  L + 
Sbjct: 129 LRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSS------ELVSESLALLVMLPIT 182

Query: 176 GETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL 235
              + +++ ++  ++E    L    S   +     L+E I+S+  ++ +L   +   + +
Sbjct: 183 EPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIE-IVSTGTKSADLKGSISNSESV 241

Query: 236 LREIISLVHHNSEASDA---GVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTR--- 289
              ++ L+ +   +  A   G++   ALCS ++ R   +  GA   LI  ++    R   
Sbjct: 242 FEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDT 301

Query: 290 ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC 349
           ER     A+A +E L        A   +   V  LVK + RVSD   +E A  +L+ +C 
Sbjct: 302 ER-----ALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDR-ATEYAAGALLALCT 355

Query: 350 DSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396
              + REEA  AGV+ QLLL++QS+C+ R K KA+ LLKLLR  W +
Sbjct: 356 AEERWREEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPD 402

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 190/411 (46%), Gaps = 38/411 (9%)

Query: 4   DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNL-TCPVTMQTLHDPSI 62
           D ++ IP  F CPISL++  DPV + TG TYDR SIEKWL AG   +CPVT Q + D  +
Sbjct: 7   DEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADL 66

Query: 63  VPNHTLRHLINQWLQMGGGQHFD-------PNYLATIDSLSTLKHSLQSHEATLETKLQI 115
            PNHTLR LI  W  +      +       P   + I+ L  ++ S  SH    E +++ 
Sbjct: 67  TPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKL--IRDSASSH----ENQVKC 120

Query: 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV 175
           ++++  ++ E+     CL   G +P  L  +        S       +E+L+ +  L   
Sbjct: 121 LKRLRQIVSENATNKRCLEAAG-VPEFLANIVSNDSENGS-----LTDEALNLLYHL--- 171

Query: 176 GETESLNLLNEESKMESFIV-----LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLG 230
             +E++      +K ++ IV     + + G    +     L++ I+  +   + +  K  
Sbjct: 172 ETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLK-- 229

Query: 231 KDDRLLREIISLVHH--NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISN-AL 287
               +  E++ ++    + +A+ A +     +C    NR   V+ G I+ +I  + + + 
Sbjct: 230 --PEVFTEVVQILDDRISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESF 287

Query: 288 TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI 347
           T ER    +AM  ++ L      +   +N+   +  + K + RVS    S+ A+  L+ +
Sbjct: 288 TSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVS-QTASDRAVRVLLSV 346

Query: 348 C--CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE 396
              C +     E +  GV+ +L L+LQ  C  +TK KA+ LLKL    W +
Sbjct: 347 GRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKLHARVWKD 397

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1

 Score =  115 bits (288), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 194/408 (47%), Gaps = 31/408 (7%)

Query: 2   KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
           K+D  +T+P  FRCPISLD+   PV+LCTG TYDR+SI++WL  GN TCP TMQ L +  
Sbjct: 3   KDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKD 62

Query: 62  IVPNHTLRHLINQWLQ-------MGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQ 114
            +PN TL+ LI  W         +   +   P      D++  +K   +  +       +
Sbjct: 63  FIPNRTLQRLIEIWSDSVRRRTCVESAELAAPTRDEIADAIDRVKIEKEERDDR-----E 117

Query: 115 IVQKIHVVLRESPPASNCLI-QLGFLPL---LLKQLFGKAESKFSQVYVQFVEESLSCVQ 170
           ++ KI    RES      L  +  F+ L   L+ Q+  +  S    + VQ   + LS ++
Sbjct: 118 VLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIR 177

Query: 171 -KLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKL 229
            K+       +L L N   ++   + LF+ G+  +K     L+E  I+   E+K L   +
Sbjct: 178 SKVSDRRRFSNLILTNGRDRLSVIVYLFKTGNVELKIDCAGLLE-FIAVDAESKLL---I 233

Query: 230 GKDDRLLREIISLVHHNSEAS--DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNAL 287
            + D L+ E++  +  +S+ S  ++ +    A+ S +  +  L++E  I  +   +S++ 
Sbjct: 234 AERDGLITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDST 293

Query: 288 TRERSLAAIAMARIEQLLAIENSKDALINNPNG--VYALVKMVFRVSDHEGSENAINSLM 345
           +           ++ ++LA      + I   +G  +  +VK + +VS    +E+A+  L 
Sbjct: 294 SSLSVSVTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVS-TAATEHAVTVLW 352

Query: 346 MIC--CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR 391
            +       +A E       +T++LLLLQS CS   +   RML  LL+
Sbjct: 353 SVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVR---RMLTDLLK 397

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 192/403 (47%), Gaps = 42/403 (10%)

Query: 7   MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66
           +TIP  F CPISL+L  DP  + TGQTY+RS I++W+  GNL+CP T Q L + ++ PN+
Sbjct: 241 LTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNY 300

Query: 67  TLRHLINQW-----LQMGGG------QHFDPNYLATIDSLSTLKH---SLQSHEATLETK 112
            LR LI+QW     ++  GG      ++ D ++      +S ++     L S   ++E +
Sbjct: 301 VLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKLSSQ--SIEDR 358

Query: 113 LQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL 172
              V +I  + + S      + + G +P+L+K L    +++         E +++C+  L
Sbjct: 359 RTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQ-------ENAVTCILNL 411

Query: 173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD 232
            +    + L +L     + S +++   GS   ++     +   +S + E K +    G  
Sbjct: 412 SIYEHNKELIML--AGAVTSIVLVLRAGSMEARENAAATL-FSLSLADENKIIIGASGA- 467

Query: 233 DRLLREIISLVHHNS--EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRE 290
              +  ++ L+ + S     DA    F+ LC  + N+   V+ G +  L+  ++++ + E
Sbjct: 468 ---IMALVDLLQYGSVRGKKDAATALFN-LCIYQGNKGRAVRAGIVKPLVKMLTDS-SSE 522

Query: 291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD 350
           R +A  A+  +  L + + +K A++   N +  L+    +       ENA   L+ +C  
Sbjct: 523 R-MADEALTILSVLASNQVAKTAIL-RANAIPPLID-CLQKDQPRNRENAAAILLCLC-- 577

Query: 351 SLQAREEAICAGVLTQL--LLLLQSQCSNRTKTKARMLLKLLR 391
             +  E+ I  G L  +  L+ L    + R K KA  LL+LLR
Sbjct: 578 -KRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 183/407 (44%), Gaps = 53/407 (13%)

Query: 1   MKEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60
           +KE     IP +F CPISL+   DPVTLCTGQTY+R +I KW   G+LTCP TMQ L D 
Sbjct: 56  IKELDLQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDD 115

Query: 61  SIVPNHTLRHLINQWLQMGGGQHFDPNYL-----------ATIDSLSTLKHSLQSHEATL 109
           ++ PN TL HLI  W        F   Y+             I+ L TLK +        
Sbjct: 116 TVTPNKTLHHLIYTW--------FSQKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHA 167

Query: 110 ETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV 169
            ++L+ +   H++ R++      +++ G +  ++  L G   S      V  +  SL   
Sbjct: 168 LSELKQIVIAHLMARKT------VVEEGGVS-VISSLLGPFTSHAVGSEVVAILVSLDL- 219

Query: 170 QKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKL 229
                  +++S + L + +K+   + +   GS   K     L+  ++    E K    +L
Sbjct: 220 -------DSDSKSGLMQPAKVSLIVDMLNDGSNETKINCARLIRGLV----EEKGFRAEL 268

Query: 230 GKDDRLLREIISLV---HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA 286
                LL  ++ LV    H +  S A +R    +   +  R  +V  GA+  L+  + + 
Sbjct: 269 VSSHSLLVGLMRLVKDKRHRNGVSPA-LRLLKPISVHKQVRSLMVSIGAVPQLVDILPSL 327

Query: 287 LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMM 346
              +     +A+  ++ L      + A+ ++ N +   V+++ RVS  E   N   S++ 
Sbjct: 328 ---DPECLELALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVS--ENCTNYALSILW 382

Query: 347 ICCDSLQAREE----AICAGVLTQLLLLLQSQCSNRTKTKARMLLKL 389
             C    A EE    A+  G+  +LLL++QS C    K ++  LLKL
Sbjct: 383 SVCK--LAPEECSPLAVEVGLAAKLLLVIQSGCDAALKQRSAELLKL 427

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 196/428 (45%), Gaps = 84/428 (19%)

Query: 7   MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66
           +T+P  F+CPISLD+   PV+LCTG TYDR+SI++WL  GN TCP TMQ L     VPN 
Sbjct: 10  ITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNL 69

Query: 67  TLRHLINQWLQMGGGQH------FDP---NYLATIDSLSTLKHSLQSHEATLETKLQIVQ 117
           TL+ LIN W    G +H       +P     + T + ++ L   L S    LE  ++IV+
Sbjct: 70  TLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMS----LENLMKIVR 125

Query: 118 KIHVVLRESPPASNCLI-QLGFLPLLLKQLFGKAESKFSQVY--------VQFVEESLS- 167
                +++S      L  ++ F+P+L+  +  K ++K   V         ++   E LS 
Sbjct: 126 ----FVKDSDSNREFLSKKMEFVPMLVDIIRTK-KTKIELVIMAIRILDSIKVDRERLSN 180

Query: 168 ---------CVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISS 218
                    C+  +LL     ++   N ESK+ES  VL +  S   K +L          
Sbjct: 181 LMLANDGGDCLTAILL-----AIQRGNLESKIESVRVL-DWISFDAKSKLM--------- 225

Query: 219 SHETKELCCKLGKDDRLLREIISLVHHNSEASD-----AGVRAFSALCSTETNRKTLVQE 273
                     + + D +L E++  +   +E+SD     A +     +  ++  R  L+  
Sbjct: 226 ----------IAERDGVLTEMMKSISI-TESSDPSLIEASLSFLITISKSKRVRSKLIAA 274

Query: 274 GAING-----LIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNG--VYALVK 326
            AI       L   ++N    E+SL       +E L +    +  +  + NG  V  +VK
Sbjct: 275 KAITKIKDILLTETLTNVAVTEKSLKL-----LETLSSKREGRLEICGDDNGRCVEGVVK 329

Query: 327 MVFRVSDHEGSENAINSLMMICC---DSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKA 383
            + +VS    +E+A+  L  +C    +     E    +  +T+LL+++QS CS   +  A
Sbjct: 330 KLLKVS-TTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMA 388

Query: 384 RMLLKLLR 391
           + L+K+L+
Sbjct: 389 KDLIKVLK 396

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1

 Score =  105 bits (261), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 184/407 (45%), Gaps = 35/407 (8%)

Query: 4   DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
           D  +T+P  F CPISLDL TDPV + TGQTYDR+SI +W+  G+ TCP T Q L D  IV
Sbjct: 300 DTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIV 359

Query: 64  PNHTLRHLINQWLQMGGGQH---FDPNYLATIDSLSTLKHSLQSHEATLETKLQIV---- 116
           PN  L++LI QW    G  +   F  +   +  S    K ++++++AT+   ++ +    
Sbjct: 360 PNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGS 419

Query: 117 --------QKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC 168
                   ++I ++ +        + + G +P L + L   +E+  +Q      E S++ 
Sbjct: 420 QAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLL--TSENAIAQ------ENSVTA 471

Query: 169 VQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCK 228
           +  L +  + +S  ++ E   +ES + +   G     +         +S+ HE K+   +
Sbjct: 472 MLNLSIYEKNKS-RIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKK---R 527

Query: 229 LGKDDRLLREIISLVHHNS-EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNAL 287
           +   D+ +  +  L+ + +       V A   L +   N   +++ G ++ L+  + N  
Sbjct: 528 IAIVDQCVEALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNEG 587

Query: 288 TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI 347
                 A      + Q L  E    A+    + V  L+ M+ R     G ENA+ +L+ +
Sbjct: 588 V-AEEAAGALALLVRQSLGAE----AIGKEDSAVAGLMGMM-RCGTPRGKENAVAALLEL 641

Query: 348 CCDSLQA-REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393
           C     A  E+ + A  +  LL  L    + R + KA  L ++ + +
Sbjct: 642 CRSGGAAVAEKVLRAPAIAGLLQTLLFTGTKRARRKAASLARVFQRR 688

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  104 bits (259), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 190/413 (46%), Gaps = 61/413 (14%)

Query: 2   KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
           K+  ++TIP  F CP+SL+L  DPV + TGQTY+R+ I++W+  GNLTCP T Q L + +
Sbjct: 234 KKSDKLTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFT 293

Query: 62  IVPNHTLRHLINQWL------QMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQI 115
           + PN+ LR LI++W       Q  G  +        +  +  L   L S   + E +   
Sbjct: 294 LTPNYVLRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSR--STEDRRNA 351

Query: 116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV 175
           V +I  + + S      + + G +P+L+  L  +       V  Q  E +++CV      
Sbjct: 352 VSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSE------DVATQ--ENAITCV------ 397

Query: 176 GETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE------LCCKL 229
                LNL   E+  E  +++F     SI       V+V+ + + E +E          L
Sbjct: 398 -----LNLSIYENNKE--LIMFAGAVTSI-------VQVLRAGTMEARENAAATLFSLSL 443

Query: 230 GKDDRL-------LREIISLVHHNSE--ASDAGVRAFSALCSTETNRKTLVQEGAINGLI 280
             ++++       +  ++ L+ + +     DA    F+ LC    N+   V+ G +  L+
Sbjct: 444 ADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFN-LCIYHGNKGRAVRAGIVTALV 502

Query: 281 AYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA 340
             +S++ TR R +   A+  +  L   +++K A++   N + AL+  + +       ENA
Sbjct: 503 KMLSDS-TRHR-MVDEALTILSVLANNQDAKSAIV-KANTLPALIG-ILQTDQTRNRENA 558

Query: 341 INSLMMICCDSLQAREEAICAGVLTQL--LLLLQSQCSNRTKTKARMLLKLLR 391
              L+ +C    +  E+ I  G L  +  L+ L    + R K KA  LL+LLR
Sbjct: 559 AAILLSLC---KRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 182/396 (45%), Gaps = 26/396 (6%)

Query: 3   EDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62
           E+ ++TIP  F+CPIS +L  DPV + +G TYDR +IEKW  +G  TCPVT   L     
Sbjct: 27  EEVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQ 86

Query: 63  VPNHTLRHLINQWL--QMGGGQHFDPNYLATIDS--LSTL--KHSLQSHEATLETKLQIV 116
           +PNHT+R +I  W    +GGG    P     + S  +S +  + S  +        +++V
Sbjct: 87  IPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMV 146

Query: 117 QKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG 176
            K+  + +ES     C+ + G   +L       +E+  + +    +EE++S +  +L +G
Sbjct: 147 TKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENANASL---LLEETVSVLTWMLPIG 203

Query: 177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236
             E  + L   S     + L  +G  +    +  L+E+ ++  H        L K + + 
Sbjct: 204 -LEGQSKLTTTSSFNRLVELLRNGDQNAAFLIKELLELNVTHVH-------ALTKINGVQ 255

Query: 237 REIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAI 296
              +  ++ +S   ++ +     + + +      ++   +N  +  + ++   E S+   
Sbjct: 256 EAFMKSINRDSTCVNSLISIHHMILTNQETVSRFLELDLVNITVEMLVDS---ENSVCEK 312

Query: 297 AMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR- 355
           A+  +  +   +  ++ +  N   +  LVK + ++S+ +     + S+M   C S     
Sbjct: 313 ALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD----LVSVMWKVCKSGDGSE 368

Query: 356 -EEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390
            EEA+  G   +L+++LQ  C   TK K   LLK++
Sbjct: 369 VEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
449513311	399	PREDICTED: U-box domain-containing prote	0.992	0.997	0.587	1e-123
449459260	399	PREDICTED: U-box domain-containing prote	0.992	0.997	0.584	1e-123
359477013	399	PREDICTED: U-box domain-containing prote	0.982	0.987	0.607	1e-122
147785382	397	hypothetical protein VITISV_011184 [Viti	0.975	0.984	0.612	1e-122
255571387	404	Spotted leaf protein, putative [Ricinus	0.980	0.972	0.626	1e-119
356507462	393	PREDICTED: E3 ubiquitin-protein ligase P	0.957	0.977	0.573	1e-114
356516368	394	PREDICTED: U-box domain-containing prote	0.957	0.974	0.572	1e-114
357464689	404	U-box domain-containing protein [Medicag	0.980	0.972	0.551	1e-107
356526787	388	PREDICTED: U-box domain-containing prote	0.955	0.987	0.548	1e-104
242073152	398	hypothetical protein SORBIDRAFT_06g01723	0.950	0.957	0.427	4e-66

>gi|449513311|ref|XP_004164292.1| PREDICTED: U-box domain-containing protein 26-like [Cucumis sativus]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/402 (58%), Positives = 310/402 (77%), Gaps = 4/402 (0%)

Query: 1   MKE-DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59
           MKE D   TIPHLFRCPISLDLF DPVTLCTGQTY+RSSIEKWLA+GNLTCPVTMQ LHD
Sbjct: 1   MKEADDHETIPHLFRCPISLDLFKDPVTLCTGQTYERSSIEKWLASGNLTCPVTMQKLHD 60

Query: 60  PSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKI 119
           PS VPN+TLRHLI QWLQM      +P  ++TIDS++ L+  L+S E + E KLQ++Q++
Sbjct: 61  PSFVPNNTLRHLICQWLQMS--DQINPQCVSTIDSMAALRIKLESDEFSYEYKLQVLQRV 118

Query: 120 HVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE 179
            ++  E P  ++CLI++GFL +LL+ +FG+ E+K SQ Y +FVE++LS +  ++ + + +
Sbjct: 119 RILCEEFPSRNSCLIRIGFLSVLLELIFGQEETKLSQEYQEFVEQALSFMVAMVSLEQIQ 178

Query: 180 SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239
           SLN+L +ESK+  F+VLF +G+  IK  LCHLV+ I SSS ETK+L   LG    LLREI
Sbjct: 179 SLNVLMDESKLSRFMVLFSNGTSMIKISLCHLVQAI-SSSVETKDLSVLLGNTTELLREI 237

Query: 240 ISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMA 299
           + L+HHNSEASDA  +A  +L + E N   LV EGA+ GLI+YISNAL RERS A  AMA
Sbjct: 238 VQLLHHNSEASDAATKAICSLSNLEQNINNLVVEGAVTGLISYISNALQRERSSAREAMA 297

Query: 300 RIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAI 359
            IE+LL   ++K+ ++N P+GV  +VKMVFRVSDH GSE+A++SL+++C DS++ARE+AI
Sbjct: 298 AIEKLLVFRSAKEEVVNIPDGVNVIVKMVFRVSDHGGSESAVSSLIILCYDSVEAREKAI 357

Query: 360 CAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV 401
             GVL+QLLLLLQSQC  +TKTKAR+LLKLLRSKW E+ +++
Sbjct: 358 RGGVLSQLLLLLQSQCCAKTKTKARILLKLLRSKWVEDKRNM 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459260|ref|XP_004147364.1| PREDICTED: U-box domain-containing protein 26-like [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/402 (58%), Positives = 309/402 (76%), Gaps = 4/402 (0%)

Query: 1   MKE-DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59
           MKE D   TIPHLFRCPISLDLF DPVTLCTGQTY+RSSIEKWLA+GNLTCPVTMQ LHD
Sbjct: 1   MKEADDHETIPHLFRCPISLDLFKDPVTLCTGQTYERSSIEKWLASGNLTCPVTMQKLHD 60

Query: 60  PSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKI 119
           PS VPN+TLRHLI QWLQM      +P  ++TIDS++ L+  L+S E + E KLQ++Q++
Sbjct: 61  PSFVPNNTLRHLICQWLQMS--DQINPQCVSTIDSMAALRIKLESDEFSYEYKLQVLQRV 118

Query: 120 HVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE 179
            ++  E P  ++CLI++GFL +LL+ +FG+ E+K SQ Y +FVE++LS +  ++ + + +
Sbjct: 119 RILCEEFPSRNSCLIRIGFLSVLLELIFGQEETKLSQEYQEFVEQALSFMVAMVSLEQIQ 178

Query: 180 SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239
           SLN+L +ESK+  F+VLF +G+  IK  LCHLV+ I SSS ETK+L   LG    LLREI
Sbjct: 179 SLNVLMDESKLSRFMVLFSNGTSMIKISLCHLVQAI-SSSVETKDLSVLLGNTTELLREI 237

Query: 240 ISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMA 299
           + L+HHNSEASDA  +A  +L + E N   LV EGA+ GLI+YISNA  RERS A  AMA
Sbjct: 238 VQLLHHNSEASDAATKAICSLSNLEQNINNLVVEGAVTGLISYISNAQQRERSSAREAMA 297

Query: 300 RIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAI 359
            IE+LL   ++K+ ++N P+GV  +VKMVFRVSDH GSE+A++SL+++C DS++ARE+AI
Sbjct: 298 AIEKLLVFRSAKEEVVNIPDGVNVIVKMVFRVSDHGGSESAVSSLIILCYDSVEAREKAI 357

Query: 360 CAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV 401
             GVL+QLLLLLQSQC  +TKTKAR+LLKLLRSKW E+ +++
Sbjct: 358 RGGVLSQLLLLLQSQCCAKTKTKARILLKLLRSKWVEDKRNM 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477013|ref|XP_002262704.2| PREDICTED: U-box domain-containing protein 26-like [Vitis vinifera]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/400 (60%), Positives = 311/400 (77%), Gaps = 6/400 (1%)

Query: 4   DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
           + +M IPHLFRCPISLDLFTDPVTL TGQTYDRSSIE+WLAAGNLTCPVTMQ LHDPS+V
Sbjct: 3   EAEMVIPHLFRCPISLDLFTDPVTLSTGQTYDRSSIEQWLAAGNLTCPVTMQKLHDPSMV 62

Query: 64  PNHTLRHLINQWLQMGGGQHFDPNYLATID---SLSTLKHSLQSHEATLETKLQIVQKIH 120
           PNHTLRHLI+QWLQ G  Q  DP  L  +    SL+ +K SLQS E++LE KL+ ++ I 
Sbjct: 63  PNHTLRHLIDQWLQTG--QQVDPESLTVMGPGPSLAAMKCSLQSQESSLENKLETLKAIR 120

Query: 121 VVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES 180
           V   E    ++ +IQLGFLPLLL+ +FG+ E++  +  ++ VEE+LSC  KLL   E   
Sbjct: 121 VSSDELSSRNSYMIQLGFLPLLLELVFGQVEAEQYRDSLKLVEEALSCALKLLAFSELGC 180

Query: 181 LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII 240
           LN+L EESK+ES +VLF+HG+  IK  +C+L+E I SSS ETKELC  LG   +LL+ I+
Sbjct: 181 LNMLKEESKLESLVVLFKHGTPMIKTSVCNLLEAI-SSSSETKELCATLGTTHQLLQGIV 239

Query: 241 SLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR 300
            LVHH+ EAS+AG++A  ALCS E+N++ L++EGA++GLI+YISNA  +E+S A +A+A 
Sbjct: 240 LLVHHDCEASEAGIKAMLALCSVESNKENLIREGAVDGLISYISNAQVKEKSAAPLAIAV 299

Query: 301 IEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC 360
           +E LL +E+ ++A++NNPNGV ALVKM F+VSDH+GSENA++SLM++C DSL+AREEAI 
Sbjct: 300 LEVLLGVESGREAVLNNPNGVKALVKMTFKVSDHQGSENAVSSLMVLCTDSLRAREEAIS 359

Query: 361 AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH 400
           AGVL+QLL LLQSQCS   KTKARMLLKLLRSK   +  H
Sbjct: 360 AGVLSQLLFLLQSQCSGTIKTKARMLLKLLRSKRIMDQNH 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785382|emb|CAN66286.1| hypothetical protein VITISV_011184 [Vitis vinifera]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/397 (61%), Positives = 309/397 (77%), Gaps = 6/397 (1%)

Query: 7   MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66
           M IPHLFRCPISLDLFTDPVTL TGQTYDRSSIE+WLAAGNLTCPVTMQ LHDPS+VPNH
Sbjct: 1   MVIPHLFRCPISLDLFTDPVTLSTGQTYDRSSIEQWLAAGNLTCPVTMQKLHDPSMVPNH 60

Query: 67  TLRHLINQWLQMGGGQHFDPNYLATID---SLSTLKHSLQSHEATLETKLQIVQKIHVVL 123
           TLRHLI+QWLQ G  Q  DP  L  +    SL+ +K SLQS E++LE KL+ ++ I V  
Sbjct: 61  TLRHLIDQWLQTG--QQVDPESLTVMGPGPSLAAMKCSLQSQESSLENKLETLKAIRVSS 118

Query: 124 RESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNL 183
            E    ++ +IQLGFLPLLL+ +FG+ E++  +  ++ VEE+LSC  KLL   E   LN+
Sbjct: 119 DELSSRNSYMIQLGFLPLLLELVFGQVEAEQYRDSLKLVEEALSCALKLLAFSELGCLNM 178

Query: 184 LNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV 243
           L EESK+ES +VLF+HG+  IK  +C+L+E I SSS ETKELC  LG   +LL+ I+ LV
Sbjct: 179 LKEESKLESLVVLFKHGTPMIKTSVCNLLEAI-SSSSETKELCATLGTTHQLLQGIVLLV 237

Query: 244 HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQ 303
           HH+ EAS+AG++A  ALCS E+N++ L++EGA++GLI+YISNA  +E+S A +A+A +E 
Sbjct: 238 HHDCEASEAGIKAMLALCSVESNKENLIREGAVDGLISYISNAQVKEKSAAPLAIAVLEV 297

Query: 304 LLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGV 363
           LL +E+ ++A++NNPNGV ALVKM F+VSDH+GSENA++SLM++C DSL+AREEAI AGV
Sbjct: 298 LLGVESGREAVLNNPNGVKALVKMTFKVSDHQGSENAVSSLMVLCTDSLRAREEAISAGV 357

Query: 364 LTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH 400
           L+QLL LLQSQCS   KTKARMLLKLLRSK   +  H
Sbjct: 358 LSQLLFLLQSQCSGTIKTKARMLLKLLRSKRIMDQNH 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571387|ref|XP_002526642.1| Spotted leaf protein, putative [Ricinus communis] gi|223534034|gb|EEF35754.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/402 (62%), Positives = 310/402 (77%), Gaps = 9/402 (2%)

Query: 6   QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65
           +MTIPHLF CPISLDLF DPVTLCTGQTYDRSSIEKWLAAGN TCPVTMQ LHD S+VPN
Sbjct: 5   EMTIPHLFICPISLDLFRDPVTLCTGQTYDRSSIEKWLAAGNFTCPVTMQKLHDLSMVPN 64

Query: 66  HTLRHLINQWLQMGGGQHFDPNYL-----ATI-DSLSTLKHSLQSHEATLETKLQIVQKI 119
           HTLRHLIN+WLQMG    FDP++       TI DSL++LKH LQSHE+TLE K Q +Q+I
Sbjct: 65  HTLRHLINEWLQMG--PQFDPDHHHHHHPVTINDSLASLKHHLQSHESTLEKKFQSLQRI 122

Query: 120 HVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE 179
             +  ES      L+QLGF PLLL+ LF +  S+ SQ  + F E +LSCV +LL   + E
Sbjct: 123 QALSEESTTRILYLLQLGFFPLLLELLFQEVVSEISQESINFSEHALSCVLRLLPFAQYE 182

Query: 180 SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239
           SLN+L EESK++SF  L EHG+  +K  LCHL+E I SSS +T+ELC  LG++  LL+ +
Sbjct: 183 SLNMLKEESKLQSFKSLLEHGTSKMKVGLCHLIEAI-SSSSDTRELCSILGQNHGLLQGL 241

Query: 240 ISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMA 299
           + LV  N EA +AG++A SALCS+E+NR  +VQ G + GL+ YISNA    R+L + AMA
Sbjct: 242 VLLVQDNCEAPEAGIKAISALCSSESNRDNMVQGGVLKGLLTYISNAERCHRNLISRAMA 301

Query: 300 RIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAI 359
            IE LL ++ +K+A+INNP+G+ ALVKMVFRVSDHEGSE+A+ SLM++C DSLQAREEAI
Sbjct: 302 TIELLLELDTAKEAVINNPDGIGALVKMVFRVSDHEGSESAVRSLMILCGDSLQAREEAI 361

Query: 360 CAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV 401
            AGVLTQ+LLLLQSQCS RTKT+ARMLLKLLRSKW E+ K++
Sbjct: 362 SAGVLTQVLLLLQSQCSGRTKTRARMLLKLLRSKWNEQPKNI 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507462|ref|XP_003522485.1| PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Glycine max]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/399 (57%), Positives = 293/399 (73%), Gaps = 15/399 (3%)

Query: 6   QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65
           ++TIPHLFRCPISLDLF DPVTLCTGQTYDRSSIEKW + GNLTCPVTMQ LHDPSIVPN
Sbjct: 7   EITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWFSTGNLTCPVTMQKLHDPSIVPN 66

Query: 66  HTLRHLINQWLQMGGGQHFDPNY--LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVL 123
           HTLRHLI+QWLQ+G      P +   ATID L+ LKH+L+S +  LE KLQ ++KI V+ 
Sbjct: 67  HTLRHLIDQWLQLG------PQFGNSATIDYLAALKHTLESPQ--LENKLQALEKIRVLS 118

Query: 124 RESPPASNCLI-QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLN 182
            E          QL FLPLLL+ +FG   SK      +F E +LSC+ KLL +   E LN
Sbjct: 119 DEYCSFRKSYFHQLSFLPLLLELVFGSRLSKSHNR--EFTELALSCILKLLPLVSLEPLN 176

Query: 183 LLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISL 242
           ++ +ESK+ +F++LFE G+ S+K  LCH+++ I  +S +T+E+C  LG   +L+ EI+ L
Sbjct: 177 MIKDESKLATFLLLFEKGTSSVKTSLCHIIDSI--ASPQTEEVCHMLGHSHKLVHEIVVL 234

Query: 243 VHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIE 302
           V  N E S   ++A  ALCS ++NR+ LV+EGAI+G+I YIS   TR+++ A +AMA I+
Sbjct: 235 VRQNCEVSKVAIKAMLALCSLQSNRENLVREGAIDGVITYISGCETRQKNAAPLAMAIIK 294

Query: 303 QLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAG 362
           +LL +E++K+AL+N+PNGV  LVKMVFRV + E SE+A+  L +ICCD  +AREEAI AG
Sbjct: 295 KLLVLESAKEALVNHPNGVETLVKMVFRVCNQECSESAVGILAIICCDFGRAREEAIEAG 354

Query: 363 VLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV 401
           VLTQLL LLQSQC  +TKTKARMLLKLLRSKW EE K V
Sbjct: 355 VLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWIEEPKQV 393

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516368|ref|XP_003526867.1| PREDICTED: U-box domain-containing protein 25-like [Glycine max]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/400 (57%), Positives = 296/400 (74%), Gaps = 16/400 (4%)

Query: 6   QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65
           ++TIPHLFRCPISLDLF DPVTLCTGQTYDRSSIEKW +AGNLTCPVTMQ LHDPSIVPN
Sbjct: 7   EITIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWFSAGNLTCPVTMQKLHDPSIVPN 66

Query: 66  HTLRHLINQWLQMGGGQHFDPNY--LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVL 123
           HTLRHLINQWLQ+G      P +   A+ID L+ LKH+L+S +  LE KLQ ++KI V+ 
Sbjct: 67  HTLRHLINQWLQLG------PQFGNSASIDYLAALKHTLESPQ--LENKLQALEKIRVLS 118

Query: 124 RESPP-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLN 182
            E      +C  QL FLPLLL+ +FG   SK   +  +F E +LSC+ KLL +   E LN
Sbjct: 119 DEYCSFRKSCFHQLNFLPLLLELVFGTQLSKSHNM--EFTELALSCILKLLPLVSLEPLN 176

Query: 183 LLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISL 242
           ++ +ESK+ +F++LFE G+ S+K  LCHL++   ++S +T+E+C  LG   +L+ EI+ L
Sbjct: 177 MIKDESKLATFLLLFEKGTSSVKTSLCHLIDS--TASPQTEEVCHMLGHSHKLVHEIVVL 234

Query: 243 VHHNSEASDA-GVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARI 301
           V  N E S    ++A  ALCS ++NR+ LV+EGAI+G I YIS   TR+++ A +AMA I
Sbjct: 235 VRQNCEVSKVVAIKAMLALCSLQSNRENLVREGAIDGAITYISGCETRQKNAAPLAMAII 294

Query: 302 EQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICA 361
           ++LL ++++K+AL+N+PNGV  LVKMVFRV + E SE+A+  L ++CCD  +AREEAI A
Sbjct: 295 KKLLVLDSAKEALVNHPNGVETLVKMVFRVCNQECSESAVGILAIVCCDFGRAREEAIGA 354

Query: 362 GVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV 401
           GVLTQLL LLQSQC  +TKTKARMLLKLLRSKW EE K V
Sbjct: 355 GVLTQLLFLLQSQCGTKTKTKARMLLKLLRSKWIEEPKQV 394

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464689|ref|XP_003602626.1| U-box domain-containing protein [Medicago truncatula] gi|355491674|gb|AES72877.1| U-box domain-containing protein [Medicago truncatula]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/401 (55%), Positives = 302/401 (75%), Gaps = 8/401 (1%)

Query: 2   KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
           K   ++TIPHLFRCPISLDL  DPVTL TGQTYDRSSIEKW++AGN TCPVTMQ LHD S
Sbjct: 3   KAQTEITIPHLFRCPISLDLLEDPVTLTTGQTYDRSSIEKWISAGNFTCPVTMQKLHDLS 62

Query: 62  IVPNHTLRHLINQWLQMGGGQHFDP--NYLATIDSLSTLKHSLQSHEATLETKLQIVQKI 119
            VPNHTLRHLI+QWLQ+G    F+P  N  ATID L++LKH+L+SH++TLETKL+ ++KI
Sbjct: 63  FVPNHTLRHLIDQWLQLGA--QFEPSSNNSATIDYLASLKHTLESHDSTLETKLKSLEKI 120

Query: 120 HVVLRES-PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGET 178
            V+  E      +C  QL FLPLLL+ +FG ++S+ S+ +++FVE +LSC+ KLL +   
Sbjct: 121 SVLSDEYCSFRKSCFQQLSFLPLLLELVFGLSDSQLSENHMEFVEIALSCILKLLPIVNL 180

Query: 179 ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE 238
           E LN++ +ESK+E FI LFE G+ SIK  LC +++   +++ +T+E+C  LG   +L+ E
Sbjct: 181 EPLNIIKDESKLERFIFLFEKGTSSIKTSLCLVIDHSTATA-QTEEVCEVLGNSQKLVHE 239

Query: 239 IISLVHHNS--EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAI 296
           I+ +V + +  + S+A ++A SALCS E+N+++LV+ GAING+I YIS    R+++LA +
Sbjct: 240 IVQVVFNKNYDKVSEAAIKALSALCSLESNKESLVKGGAINGIITYISRCENRQKNLAPL 299

Query: 297 AMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQARE 356
           AMA +++LL +E+ K+AL+N+ NG+  LVKMVF+V + E SE+A+  L ++C D   ARE
Sbjct: 300 AMATMKKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVEILSIVCSDFGSARE 359

Query: 357 EAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE 397
            AI AGVL+QLL LLQSQC  +TKTKARMLLKLLRSKW EE
Sbjct: 360 VAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWNEE 400

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526787|ref|XP_003531998.1| PREDICTED: U-box domain-containing protein 25-like [Glycine max]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/392 (54%), Positives = 295/392 (75%), Gaps = 9/392 (2%)

Query: 4   DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
           + Q  IPHLFRCPISLDLF DPVTLCTGQTYDRS+IEKWLA GNLTCPVTMQ LHDPSIV
Sbjct: 3   ESQNAIPHLFRCPISLDLFEDPVTLCTGQTYDRSNIEKWLAQGNLTCPVTMQKLHDPSIV 62

Query: 64  PNHTLRHLINQWLQMGGGQHFDPNY--LATIDSLSTLKHSLQSHEATLETKLQIVQKIHV 121
           PNHTLRHLI+QWLQ+     FDP     +TI+SL++LK +L+S+E++LE KLQ ++KI V
Sbjct: 63  PNHTLRHLIDQWLQL--DPQFDPANPEASTIESLASLKLNLESYESSLENKLQALRKISV 120

Query: 122 VLRESPPAS-NCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES 180
           +  E    + +C +QL FLPLLL+ +FG   S  +   + F+E +L C++KLL +G  E 
Sbjct: 121 LSDEYCSFNKSCFLQLDFLPLLLELVFGTQVSPEND--MNFIELALCCIKKLLPLGSLEP 178

Query: 181 LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII 240
           LN++ + SK+ +F++LFE G+ S+K  LC ++E   SSS ET++LC  LGK + L+ EI+
Sbjct: 179 LNMIKDGSKLATFVLLFEKGTNSVKTSLCRVIESASSSSSETEDLCSTLGKTNELVHEIV 238

Query: 241 SLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR 300
            +V+ N E S   ++A SALCS ++NR++LV+ GAI  ++ YI++  +  R++A +AM  
Sbjct: 239 QVVNQNYEVSGDAIKAMSALCSLQSNRESLVRGGAIEEIMRYITS--SERRNMAPVAMRI 296

Query: 301 IEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC 360
           +E+L+ + ++K+AL+N+PNGV  LV MVFRVSD + SE+A+  L+ +C +  +AREEAI 
Sbjct: 297 VEKLMGLRSAKEALVNHPNGVQTLVNMVFRVSDQKCSESAVEVLLTVCGEFERAREEAIE 356

Query: 361 AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392
           +GVLT+LLLLLQSQCSN TK+KARMLLKLLRS
Sbjct: 357 SGVLTRLLLLLQSQCSNTTKSKARMLLKLLRS 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242073152|ref|XP_002446512.1| hypothetical protein SORBIDRAFT_06g017230 [Sorghum bicolor] gi|241937695|gb|EES10840.1| hypothetical protein SORBIDRAFT_06g017230 [Sorghum bicolor]

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 235/402 (58%), Gaps = 21/402 (5%)

Query: 7   MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66
           M+IPHLFRCPISLD+FTDPVTLCTGQTYDR  IE+WLAAG+ TCPVTMQ L D ++VPN 
Sbjct: 1   MSIPHLFRCPISLDIFTDPVTLCTGQTYDRPCIERWLAAGHRTCPVTMQPLGDAALVPNR 60

Query: 67  TLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES 126
           TLRHLI +WL      H  P+  A   SL+ LK  LQS  A    K+  ++K   +  ES
Sbjct: 61  TLRHLIERWLS-ADHHHQIPDDDAEEPSLAALKRCLQS-GAGARDKVAALRKAVALASES 118

Query: 127 PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES-----L 181
                C++QLGFLP+LL+ +F  A +    +  Q  + +L C   LL      S     L
Sbjct: 119 DVGRACMLQLGFLPVLLQLVF-HAPTPRDDLSEQ-EDLALQCALTLLPTSSPASPQHGCL 176

Query: 182 NLLNEESKMESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII 240
           N+L  E+ + SF+ L   HG    K  LC L+E I +++  T++L        R+ +E++
Sbjct: 177 NMLKTEASLTSFVALLAAHGRAVAKCGLCRLLETIATAT-ATRDLALAAAASPRVWKELL 235

Query: 241 SLVHH-NSEASDAGVRAFSAL-CSTETNRKTLVQEGAINGLIAYIS-----NALTR--ER 291
            L+ + N     A V + +A+ C  E  R + V  GA+  L+  +S     N   R    
Sbjct: 236 PLLRNGNYRVFGASVPSVAAICCGAEPARGSAVHHGAVPALLGCLSWASAGNGKARGGAA 295

Query: 292 SLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV-SDHEGSENAINSLMMICCD 350
           + A  A+A +E L A E  + A+   P  V ALV+ VF + S +EGSE+A+ +L+ +C +
Sbjct: 296 AAAWSALAALEALAASEAGRRAVAREPGAVRALVRHVFLMSSSNEGSEHAVAALLAVCRE 355

Query: 351 SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS 392
           S  AR EA  AGV+TQ+LLLLQSQC  R KT+AR LLKL +S
Sbjct: 356 SRAARSEAAGAGVVTQVLLLLQSQCGTRAKTRARSLLKLFKS 397

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
TAIR|locus:2012136	421	PUB26 "plant U-box 26" [Arabid	0.965	0.919	0.287	1.4e-39
TAIR|locus:2090604	421	PUB25 "plant U-box 25" [Arabid	0.965	0.919	0.297	6.3e-37
TAIR|locus:2079964	435	PUB22 "plant U-box 22" [Arabid	0.319	0.294	0.340	1.8e-26
TAIR|locus:2039265	411	PUB23 "plant U-box 23" [Arabid	0.319	0.311	0.356	1.1e-25
TAIR|locus:2144846	409	AT5G09800 [Arabidopsis thalian	0.169	0.166	0.573	1.5e-21
UNIPROTKB|Q6EUK7	728	PUB4 "U-box domain-containing	0.209	0.115	0.511	2.4e-21
TAIR|locus:2013688	729	PUB17 "plant U-box 17" [Arabid	0.264	0.145	0.440	8e-21
TAIR|locus:2174814	420	CMPG2 ""CYS, MET, PRO, and GLY	0.184	0.176	0.567	1.1e-20
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.194	0.112	0.525	5.3e-20
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.296	0.180	0.373	9.1e-20

TAIR|locus:2012136 PUB26 "plant U-box 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 116/404 (28%), Positives = 194/404 (48%)

Query:     4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
             D  + IP+ FRCPISLDL +DPVT+ TGQTYDR+SI+ W+A GN TCPVT   L D +++
Sbjct:     9 DLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLI 68

Query:    64 PNHTLRHLINQWL---QMGGGQHFD-PNYLA---TIDSLSTLKHSLQSHEATLETKLQIV 116
             PNHTLR LI +W    +  G +    P   A   ++ SL +   ++     ++ ++   +
Sbjct:    69 PNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAI 128

Query:   117 QKIHVVLRESPPASNCXXXXXXXXXXXXXXXXXAESKFSQVYVQFVEESLSCVQKLLLVG 176
             +++  + R+S    N                  A+ + + +  + V ESL+ +  LL + 
Sbjct:   129 RRLRGLARDSE--KNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLV-LLHMT 185

Query:   177 ETXXXXXXXXXXKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL 236
             ET          ++     L    S  I+     L+E++++ + ++ +L   +   D + 
Sbjct:   186 ETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGA-KSMDLKLIISGSDSIF 244

Query:   237 REIISLVHH---NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSL 293
               ++ L+ +   +  A   G++A  ALC  +  R   +  GA   LI  +  A   +R  
Sbjct:   245 EGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRL--AADFDRCD 302

Query:   294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ 353
                 +A +E L  +     A   +   V  +VK + RVSD   +E A  +L+ +C    +
Sbjct:   303 TERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDR-ATEYAAGALLALCTAEER 361

Query:   354 AREEAICAGVXXXXXXXXXXXCSNRTKTKARMLLKLLRSKWAEE 397
              R+EA  AG+           C+ R K KA+MLLKLLR  W ++
Sbjct:   362 CRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDD 405

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2090604 PUB25 "plant U-box 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 119/400 (29%), Positives = 178/400 (44%)

Query:     4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGN-LTCPVTMQTLHDPSI 62
             D  + IP+ FRCPISL+L  DPVT+CTGQTYDR+SIE W++ GN  TCPVT   L D ++
Sbjct:     9 DLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTL 68

Query:    63 VPNHTLRHLINQWL--QMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIH 120
             +PNHTLR LI +W       G    P      D  S ++  L    A   T + +  +  
Sbjct:    69 IPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTS-VRALLSQASAITGTHVSVRSRA- 126

Query:   121 VVLRESPPASNCXXXXXXXXXXXXXXXXXAESKFSQVYV-QFVEESLSCVQKLLLVGETX 179
               LR     +                    +  FS+    + V ESL+ +  L +     
Sbjct:   127 AALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALLVMLPITEPNQ 186

Query:   180 XXXXXXXXXKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI 239
                      ++E    L    S   +     L+E I+S+  ++ +L   +   + +   +
Sbjct:   187 FVSISSDPGRVEFLTRLLFDSSIETRVNAAALIE-IVSTGTKSADLKGSISNSESVFEGV 245

Query:   240 ISLVHH---NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAI 296
             + L+ +   +  A   G++   ALCS ++ R   +  GA   LI  +  A   +R     
Sbjct:   246 LDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRL--AADFDRCDTER 303

Query:   297 AMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQARE 356
             A+A +E L        A   +   V  LVK + RVSD   +E A  +L+ +C    + RE
Sbjct:   304 ALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDR-ATEYAAGALLALCTAEERWRE 362

Query:   357 EAICAGVXXXXXXXXXXXCSNRTKTKARMLLKLLRSKWAE 396
             EA  AGV           C+ R K KA+ LLKLLR  W +
Sbjct:   363 EAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPD 402

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2079964 PUB22 "plant U-box 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
 Identities = 45/132 (34%), Positives = 73/132 (55%)

Query:     4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNL-TCPVTMQTLHDPSI 62
             D+++ IP  F CPISLD+  DPV + TG TYDR SIEKWL +G   +CPVT Q + +  +
Sbjct:     2 DQEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETDL 61

Query:    63 VPNHTLRHLINQWLQMGGGQHFD--PNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIH 120
              PNHTLR LI  W  +      +  P     I   S ++  ++   ++   +++ ++++ 
Sbjct:    62 TPNHTLRRLIQSWCTLNASYGIERIPTPKPPICK-SEIEKLIKESSSSHLNQVKCLKRLR 120

Query:   121 VVLRESPPASNC 132
              ++ E+     C
Sbjct:   121 QIVSENTTNKRC 132

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2039265 PUB23 "plant U-box 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 47/132 (35%), Positives = 73/132 (55%)

Query:     4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNL-TCPVTMQTLHDPSI 62
             D ++ IP  F CPISL++  DPV + TG TYDR SIEKWL AG   +CPVT Q + D  +
Sbjct:     7 DEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADL 66

Query:    63 VPNHTLRHLINQWLQMGGGQHFD--PNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIH 120
              PNHTLR LI  W  +      +  P     I   S ++  ++   ++ E +++ ++++ 
Sbjct:    67 TPNHTLRRLIQSWCTLNASYGVERIPTPRPPICK-SEIEKLIRDSASSHENQVKCLKRLR 125

Query:   121 VVLRESPPASNC 132
              ++ E+     C
Sbjct:   126 QIVSENATNKRC 137

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2144846 AT5G09800 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 39/68 (57%), Positives = 47/68 (69%)

Query:     8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHT 67
             T+P  F+CPISLD+   PV+L TG TYDR SI++WL  GN TCP TMQ L +   VPN T
Sbjct:    10 TVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEFVPNLT 69

Query:    68 LRHLINQW 75
             L  LI+ W
Sbjct:    70 LHRLIDHW 77

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6EUK7 PUB4 "U-box domain-containing protein 4" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 222 (83.2 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:     3 EDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62
             +D   ++P  F CPISLDL  DPV   TGQTYDR SI +W+  G+ TCP + QTL D  +
Sbjct:   291 DDTSFSVPKEFSCPISLDLMRDPVVASTGQTYDRPSIIQWIEEGHSTCPNSGQTLADHRL 350

Query:    63 VPNHTLRHLINQWLQMGGGQHFDP 86
             VPN  LR LI+QW  + G Q+  P
Sbjct:   351 VPNRALRSLISQWCGVYGLQYDSP 374

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.0e-21, Sum P(2) = 8.0e-21
 Identities = 48/109 (44%), Positives = 67/109 (61%)

Query:     4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
             D  +T+P  F CPISLDL TDPV + TGQTYDR+SI +W+  G+ TCP T Q L D  IV
Sbjct:   300 DTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIV 359

Query:    64 PNHTLRHLINQWLQMGGGQH---FDPNYLATIDSLSTLKHSLQSHEATL 109
             PN  L++LI QW    G  +   F  +   +  S    K ++++++AT+
Sbjct:   360 PNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATV 408

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IGI

TAIR|locus:2174814 CMPG2 ""CYS, MET, PRO, and GLY protein 2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 42/74 (56%), Positives = 53/74 (71%)

Query:     2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
             K+D  +T+P  FRCPISLD+   PV+LCTG TYDR+SI++WL  GN TCP TMQ L +  
Sbjct:     3 KDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKD 62

Query:    62 IVPNHTLRHLINQW 75
              +PN TL+ LI  W
Sbjct:    63 FIPNRTLQRLIEIW 76

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 236 (88.1 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
 Identities = 41/78 (52%), Positives = 56/78 (71%)

Query:     3 EDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62
             + R +TIP  FRCPISL+L  DPV + TGQTY+R+ IEKW+A+G+ TCP T Q +   ++
Sbjct:   267 DSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSAL 326

Query:    63 VPNHTLRHLINQWLQMGG 80
              PN+ LR LI+QW +  G
Sbjct:   327 TPNYVLRSLISQWCETNG 344

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 9.1e-20, Sum P(2) = 9.1e-20
 Identities = 47/126 (37%), Positives = 74/126 (58%)

Query:     7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH 66
             + +PH F CPI+L++  DPV + TGQTY++ SI+KW  AG+ TCP T Q L   S+ PN 
Sbjct:   288 LILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNF 347

Query:    67 TLRHLINQWLQMGG----GQHFDPNYL-ATIDSLSTLKHSLQSHEATLETKLQIVQKIHV 121
              L++LI QW +        +   P+      D +S L  +L S +  LE + + V+++ +
Sbjct:   348 ALKNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQ--LEEQRRSVKQMRL 405

Query:   122 VLRESP 127
             + RE+P
Sbjct:   406 LARENP 411

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FXA4	PUB26_ARATH	6, ., 3, ., 2, ., -	0.3071	0.9576	0.9121	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	401
smart00504	63	smart00504, Ubox, Modified RING finger domain	6e-24
pfam04564	73	pfam04564, U-box, U-box domain	8e-17
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	1e-04
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	3e-04

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 93.5 bits (233), Expect = 6e-24
 Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLI 72
          F CPISL++  DPV L +GQTY+RS+IEKWL   + T PVT Q L    ++PN  L+  I
Sbjct: 2  FLCPISLEVMKDPVILPSGQTYERSAIEKWL-LSHGTDPVTGQPLTHEDLIPNLALKSAI 60

Query: 73 NQW 75
           +W
Sbjct: 61 QEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 74.3 bits (183), Expect = 8e-17
 Identities = 30/69 (43%), Positives = 43/69 (62%)

Query: 9  IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
          IP  F  PI+L+L  DPV L +G TYDRS+IE+ L + + T P T + L    ++PN  L
Sbjct: 1  IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 69 RHLINQWLQ 77
          +  I+ WL+
Sbjct: 61 KEKIDAWLE 69

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 13 FRCPISLDLFTD----PVTLCTGQTYDRSSIEKWLAAGN-LTCPV 52
          F CPIS ++ TD    PV L  G  Y R ++EK    G    CP 
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 13 FRCPISLDLFTDPVT--LCTGQTYDRSSIEKWLAAGNLT-CPV 52
            CP++L  F +PVT   C    +++ +I   L       CPV
Sbjct: 12 LTCPLTLQPFEEPVTSKKC-NHVFEKDAILSMLRRNKTVKCPV 53

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.96
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.93
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.91
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.83
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.81
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.79
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.69
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.63
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.62
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.54
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.54
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.54
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.51
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.5
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.48
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.36
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.34
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.32
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.3
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.25
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.23
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.18
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.18
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	99.18
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.17
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	99.11
PRK09687	280	putative lyase; Provisional	99.05
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.0
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.99
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.99
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	98.98
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.96
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.93
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.92
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.89
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.88
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.84
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.83
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.82
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.81
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.81
PRK09687	280	putative lyase; Provisional	98.8
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.74
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.73
PHA02929	238	N1R/p28-like protein; Provisional	98.72
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.68
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.65
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.65
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.64
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.61
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.58
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.56
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.56
PHA02926	242	zinc finger-like protein; Provisional	98.5
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.49
PF14634	44	zf-RING_5: zinc-RING finger domain	98.46
KOG2660	331	consensus Locus-specific chromosome binding protei	98.45
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.43
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.42
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.42
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.41
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.38
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.38
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.28
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.27
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.26
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.25
PF05536	543	Neurochondrin: Neurochondrin	98.21
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.19
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.18
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.18
PF05536	543	Neurochondrin: Neurochondrin	98.14
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.14
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.14
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.08
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.07
COG5152	259	Uncharacterized conserved protein, contains RING a	98.04
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.03
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.01
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.0
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.93
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.89
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.87
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.87
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.85
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.85
PTZ00429	746	beta-adaptin; Provisional	97.79
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.77
TIGR02270	410	conserved hypothetical protein. Members are found	97.76
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.69
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.66
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.66
PTZ00429	746	beta-adaptin; Provisional	97.65
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.62
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.62
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.6
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.58
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.58
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.58
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.54
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.5
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.5
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.49
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.47
TIGR02270	410	conserved hypothetical protein. Members are found	97.46
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.45
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.45
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.43
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.36
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.3
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.29
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.2
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.15
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.12
KOG0567	289	consensus HEAT repeat-containing protein [General	97.09
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.09
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.04
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.01
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.0
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.98
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.97
KOG4367	699	consensus Predicted Zn-finger protein [Function un	96.96
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.88
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.87
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.83
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.82
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.73
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.7
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.63
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.58
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.56
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.51
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.5
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.48
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.4
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	96.34
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.26
COG5369	743	Uncharacterized conserved protein [Function unknow	96.23
PF04641	260	Rtf2: Rtf2 RING-finger	96.22
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	96.18
COG5369	743	Uncharacterized conserved protein [Function unknow	96.18
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.16
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.13
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	96.12
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.12
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.07
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.06
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.03
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	96.03
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	96.01
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.01
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.99
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.94
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.9
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.83
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.75
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.73
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.73
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.65
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.56
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.47
KOG3036	293	consensus Protein involved in cell differentiation	95.46
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.44
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	95.43
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	95.43
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	95.35
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	95.29
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.28
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.21
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.18
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.16
PF05004	309	IFRD: Interferon-related developmental regulator (	95.06
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	94.98
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.89
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	94.87
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.85
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	94.66
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	94.61
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.51
PRK14707	2710	hypothetical protein; Provisional	94.48
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	94.37
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.27
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.21
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	94.17
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.16
PRK14707	2710	hypothetical protein; Provisional	94.16
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	94.15
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	94.07
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	94.02
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.92
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	93.91
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.89
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.78
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	93.76
KOG3036	293	consensus Protein involved in cell differentiation	93.72
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	93.71
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.66
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.66
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	93.58
KOG0289	506	consensus mRNA splicing factor [General function p	93.55
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.54
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.51
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	93.48
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.24
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.2
PF07814	361	WAPL: Wings apart-like protein regulation of heter	93.2
KOG3002	299	consensus Zn finger protein [General function pred	93.06
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.02
KOG0212	675	consensus Uncharacterized conserved protein [Funct	93.0
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.97
PF05004	309	IFRD: Interferon-related developmental regulator (	92.93
KOG3039	303	consensus Uncharacterized conserved protein [Funct	92.91
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.9
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.89
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	92.88
KOG1001	674	consensus Helicase-like transcription factor HLTF/	92.87
KOG1824	1233	consensus TATA-binding protein-interacting protein	92.76
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.73
KOG3113	293	consensus Uncharacterized conserved protein [Funct	92.69
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.51
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	92.46
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.41
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.37
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.36
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	92.24
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.09
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.88
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	91.85
KOG2259	823	consensus Uncharacterized conserved protein [Funct	91.7
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.7
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.61
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	91.55
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.55
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	91.54
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	91.52
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	91.44
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	91.3
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	91.29
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	91.28
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.18
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	91.14
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	91.07
COG5109	396	Uncharacterized conserved protein, contains RING Z	90.81
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	90.72
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.7
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	90.56
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	90.53
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	90.41
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	90.37
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	90.02
PF08045	257	CDC14: Cell division control protein 14, SIN compo	89.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	89.63
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	89.57
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	89.16
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.13
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	89.11
KOG4739	233	consensus Uncharacterized protein involved in syna	89.1
KOG2025	892	consensus Chromosome condensation complex Condensi	88.92
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	88.48
PHA03096	284	p28-like protein; Provisional	88.4
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	88.08
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	87.53
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	87.2
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	87.12
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	87.05
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	86.99
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	86.34
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	85.85
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	85.85
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	85.82
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	85.75
KOG0298	1394	consensus DEAD box-containing helicase-like transc	85.58
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	85.44
COG5116	926	RPN2 26S proteasome regulatory complex component [	85.38
COG5236	493	Uncharacterized conserved protein, contains RING Z	85.15
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.57
KOG2979	262	consensus Protein involved in DNA repair [General	84.31
KOG2025	892	consensus Chromosome condensation complex Condensi	83.92
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	83.6
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	83.59
KOG1940	276	consensus Zn-finger protein [General function pred	83.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	82.45
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	82.12
KOG0414	1251	consensus Chromosome condensation complex Condensi	81.68
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	81.46
KOG0567	289	consensus HEAT repeat-containing protein [General	81.17
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	81.1
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	81.0
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	80.63
PHA02825	162	LAP/PHD finger-like protein; Provisional	80.24

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=1.7e-29  Score=276.72  Aligned_cols=285  Identities=15%  Similarity=0.181  Sum_probs=240.7

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      ..+..+++-|++..++++.|+.|+..|+.+++.++.||..|.+ .|+||.|+.+|++++        ..++++|+. +|.
T Consensus        13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~--------~~vk~nAaa-aL~   83 (2102)
T PLN03200         13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGT--------LGAKVNAAA-VLG   83 (2102)
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCC--------HHHHHHHHH-HHH
Confidence            4455566667777667899999999999999999999999997 899999999999876        459999998 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC----c
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN----S  247 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~  247 (401)
                      +++.+++....++ ..|+||+|+++|++|+.+.|++|+.+|++| +.++.+++++..|+...|+||+|+.++++.    .
T Consensus        84 nLS~~e~nk~~Iv-~~GaIppLV~LL~sGs~eaKe~AA~AL~sL-S~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~  161 (2102)
T PLN03200         84 VLCKEEDLRVKVL-LGGCIPPLLSLLKSGSAEAQKAAAEAIYAV-SSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDK  161 (2102)
T ss_pred             HHhcCHHHHHHHH-HcCChHHHHHHHHCCCHHHHHHHHHHHHHH-HcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhH
Confidence            9997765544444 789999999999999999999999999999 765322366656554469999999999532    2


Q ss_pred             hhHHHHHHHHHHhcCCCchhHH-HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHH
Q 015728          248 EASDAGVRAFSALCSTETNRKT-LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALV  325 (401)
Q Consensus       248 ~~~~~a~~aL~~Ls~~~~n~~~-iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv  325 (401)
                      .+++.|+.+|+||+.+++|+.. ++++|+||.|+++|.   ++++..+..|+++|.+++.+ ++.+..++ +.|+||.|+
T Consensus       162 ~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs---S~d~~lQ~eAa~aLa~Lass~ee~~~aVI-eaGaVP~LV  237 (2102)
T PLN03200        162 VVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS---SGNSDAQANAASLLARLMMAFESSISKVL-DAGAVKQLL  237 (2102)
T ss_pred             HHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHH
Confidence            2667888999999999998865 589999999999999   67889999999999999865 67888886 899999999


Q ss_pred             HHHHhc-CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCC--------CHHHHHHHHHHHHHHHHh
Q 015728          326 KMVFRV-SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQC--------SNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       326 ~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~--------~~~~~~~A~~~L~~l~~~  393 (401)
                      + ++++ .++.+++.|+++|.+||.++.+.+..+++.|+|+.|+.++.++.        +...++.|.|+|..+++.
T Consensus       238 ~-LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg  313 (2102)
T PLN03200        238 K-LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG  313 (2102)
T ss_pred             H-HHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence            9 5654 45588999999999999998999999999999999999997652        134589999999998873

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=4.3e-29  Score=273.47  Aligned_cols=284  Identities=16%  Similarity=0.209  Sum_probs=242.0

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..|.++|++  ++.+.|..|++.|++++..++.++..|+++|+||+|+++|++++.        +++++|+| +|.|
T Consensus       446 ggIp~LV~LL~s--~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~--------~iqeeAaw-AL~N  514 (2102)
T PLN03200        446 EGVQLLISLLGL--SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ--------KAKEDSAT-VLWN  514 (2102)
T ss_pred             CcHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHH-HHHH
Confidence            356677787875  357899999999999999999999999999999999999998764        59999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchh-----------------------------
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETK-----------------------------  223 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~-----------------------------  223 (401)
                      ++.++++.+.++.++|+|++|+++|++++.+.|+.|+++|.+| ....+++                             
T Consensus       515 La~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nL-i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIls  593 (2102)
T PLN03200        515 LCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL-VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLS  593 (2102)
T ss_pred             HhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH-HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHh
Confidence            9988777788887889999999999999999999999999999 5322110                             


Q ss_pred             -----hhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHH
Q 015728          224 -----ELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAI  296 (401)
Q Consensus       224 -----~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~  296 (401)
                           +.........|+|+.|+.+| +++...++.|+++|.+++. +++++..++..|+||+|+.+|+   +++.++++.
T Consensus       594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs---s~~~~v~ke  670 (2102)
T PLN03200        594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT---NNTEAVATQ  670 (2102)
T ss_pred             hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh---cCChHHHHH
Confidence                 00111111247899999999 5667799999999999995 6667899999999999999999   678889999


Q ss_pred             HHHHHHHHhCC--HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728          297 AMARIEQLLAI--ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ  374 (401)
Q Consensus       297 a~~~L~~La~~--~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~  374 (401)
                      |+++|.+|+.+  .+++..++ +.|+|++|++ ++++++....+.|+.+|.+|+.+. +.+.++..+|+|++|+.+|++|
T Consensus       671 AA~AL~nL~~~~~~~q~~~~v-~~GaV~pL~~-LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G  747 (2102)
T PLN03200        671 SARALAALSRSIKENRKVSYA-AEDAIKPLIK-LAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREG  747 (2102)
T ss_pred             HHHHHHHHHhCCCHHHHHHHH-HcCCHHHHHH-HHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhC
Confidence            99999999954  34455665 8899999999 678888899999999999999985 5677899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhH
Q 015728          375 CSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       375 ~~~~~~~~A~~~L~~l~~~~~  395 (401)
                       +++.|+.|+++|..|.++.+
T Consensus       748 -~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        748 -TLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             -ChHHHHHHHHHHHHHHhCCC
Confidence             99999999999999998665

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.2e-28  Score=232.56  Aligned_cols=295  Identities=12%  Similarity=0.169  Sum_probs=249.6

Q ss_pred             CCCCCCh----hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHH
Q 015728           86 PNYLATI----DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQF  161 (401)
Q Consensus        86 ~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~  161 (401)
                      +.||++.    ..++.+++.|... .++..|.+|++.|.+.++++...-+.++++|++|.|+.+|.+++.        .+
T Consensus        98 ~~ppi~~vi~~G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--------~v  168 (514)
T KOG0166|consen   98 RNPPIDEVIQSGVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--------DV  168 (514)
T ss_pred             CCCCHHHHHHcCcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--------HH
Confidence            4456553    7888899888744 448889999999999999999999999999999999999999885        49


Q ss_pred             HHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhccc-chhhhhhhhccchHHHHHH
Q 015728          162 VEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSH-ETKELCCKLGKDDRLLREI  239 (401)
Q Consensus       162 ~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~-~~~~~~~~i~~~~g~i~~L  239 (401)
                      ++.|+| +|.|++.+....+..+.+.|++++|+.++...+. ....+++|+|.|| +... +.    ..+.....++|.|
T Consensus       169 ~eQavW-ALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNl-crgk~P~----P~~~~v~~iLp~L  242 (514)
T KOG0166|consen  169 REQAVW-ALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNL-CRGKNPS----PPFDVVAPILPAL  242 (514)
T ss_pred             HHHHHH-HHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHH-HcCCCCC----CcHHHHHHHHHHH
Confidence            999999 9999999999999999999999999999987765 7888999999999 5433 21    1222223688999


Q ss_pred             HHHc-cCCchhHHHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhC
Q 015728          240 ISLV-HHNSEASDAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINN  317 (401)
Q Consensus       240 v~lL-~~~~~~~~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~  317 (401)
                      ..++ +.|.++...|.|||.+|+..+ +....+++.|++|.|+++|.   ..+..++..|+.++.|++.+.+...+.+.+
T Consensus       243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~---~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~  319 (514)
T KOG0166|consen  243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG---HSSPKVVTPALRAIGNIVTGSDEQTQVVIN  319 (514)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc---CCCcccccHHHhhccceeeccHHHHHHHHh
Confidence            9999 567889999999999999544 45566679999999999999   677788899999999999999998888889


Q ss_pred             CCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH-hhHH
Q 015728          318 PNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS-KWAE  396 (401)
Q Consensus       318 ~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~-~~~e  396 (401)
                      .|++|.|..++.++.....++.|++++.||+.++.+..+.++++|.+|.|+++|+.+ ....|+.|+|++..+.. -.+|
T Consensus       320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~  398 (514)
T KOG0166|consen  320 SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPE  398 (514)
T ss_pred             cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHH
Confidence            999999999544344445888899999999999998899999999999999999998 89999999999987765 3344


Q ss_pred             hhc
Q 015728          397 ELK  399 (401)
Q Consensus       397 ~~~  399 (401)
                      .++
T Consensus       399 qi~  401 (514)
T KOG0166|consen  399 QIK  401 (514)
T ss_pred             HHH
Confidence            433

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-27  Score=231.99  Aligned_cols=280  Identities=16%  Similarity=0.170  Sum_probs=242.8

Q ss_pred             hcChHHHHHHHHHHHHHHhcCch-hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728          106 EATLETKLQIVQKIHVVLRESPP-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL  184 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v  184 (401)
                      +++++.+..++..+|.+.+.... .-..++..|.||.||.+|...+.       +.++.+|+| +|.|++.+..+..+.+
T Consensus        77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~-------~~lq~eAAW-aLTnIAsgtse~T~~v  148 (514)
T KOG0166|consen   77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDN-------PTLQFEAAW-ALTNIASGTSEQTKVV  148 (514)
T ss_pred             CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCC-------hhHHHHHHH-HHHHHhcCchhhcccc
Confidence            45677899999999999976553 34455567999999999986553       679999999 9999999888887788


Q ss_pred             ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCc--hhHHHHHHHHHHhcC
Q 015728          185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNS--EASDAGVRAFSALCS  262 (401)
Q Consensus       185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~a~~aL~~Ls~  262 (401)
                      +++|++|.++.+|.+++..+++.|+|+|.|+ +.++.  ..|..+... |++++|+.++..+.  ...++++|+|.|||.
T Consensus       149 v~agavp~fi~Ll~s~~~~v~eQavWALgNI-agds~--~~Rd~vl~~-g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr  224 (514)
T KOG0166|consen  149 VDAGAVPIFIQLLSSPSADVREQAVWALGNI-AGDSP--DCRDYVLSC-GALDPLLRLLNKSDKLSMLRNATWTLSNLCR  224 (514)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHHHhcc-ccCCh--HHHHHHHhh-cchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999999 88773  777777775 99999999995433  599999999999998


Q ss_pred             CCchhHHHH-hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHH
Q 015728          263 TETNRKTLV-QEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAI  341 (401)
Q Consensus       263 ~~~n~~~iv-~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~  341 (401)
                      +......+. -..++|.|..+|.   +.|.++...|+++|.+|+.++..+.+++.+.|++|.||+ ++...+..++-.|+
T Consensus       225 gk~P~P~~~~v~~iLp~L~~ll~---~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~-lL~~~~~~v~~PaL  300 (514)
T KOG0166|consen  225 GKNPSPPFDVVAPILPALLRLLH---STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVD-LLGHSSPKVVTPAL  300 (514)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHH-HHcCCCcccccHHH
Confidence            776555543 3679999999999   789999999999999999888888777779999999999 57777767888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhccC
Q 015728          342 NSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV  401 (401)
Q Consensus       342 ~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~~  401 (401)
                      +++.|+..+++...+.++..|+++.|..++.....+..|+.|.|++-.+.-..+|++++|
T Consensus       301 RaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaV  360 (514)
T KOG0166|consen  301 RAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAV  360 (514)
T ss_pred             hhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHH
Confidence            999999999999999999999999999999855477899999999999999888888764

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.4e-28  Score=220.36  Aligned_cols=265  Identities=14%  Similarity=0.146  Sum_probs=231.5

Q ss_pred             hhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728          105 HEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL  184 (401)
Q Consensus       105 ~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v  184 (401)
                      +.+.-+.|+.|+++|.+|+.. +.||..|...|++.+|+++-++.+.        .+|.++.. +|.+|+...+ +++.+
T Consensus       136 mtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdi--------rvqrnatg-aLlnmThs~E-nRr~L  204 (550)
T KOG4224|consen  136 MTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDI--------RVQRNATG-ALLNMTHSRE-NRRVL  204 (550)
T ss_pred             cCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchh--------hHHHHHHH-HHHHhhhhhh-hhhhh
Confidence            445678899999999999988 5599999999999999998787764        49999999 8888986554 45566


Q ss_pred             ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchH--HHHHHHHHc-cCCchhHHHHHHHHHHhc
Q 015728          185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDR--LLREIISLV-HHNSEASDAGVRAFSALC  261 (401)
Q Consensus       185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g--~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls  261 (401)
                      +.+|++|.|+.++++++..+|+.+..+|.++ +.+.   .+|+.++++ |  .+|.||.++ ++++.++..|..+|+||+
T Consensus       205 V~aG~lpvLVsll~s~d~dvqyycttaisnI-aVd~---~~Rk~Laqa-ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnla  279 (550)
T KOG4224|consen  205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNI-AVDR---RARKILAQA-EPKLVPALVDLMDDGSDKVKCQAGLALRNLA  279 (550)
T ss_pred             hccCCchhhhhhhccCChhHHHHHHHHhhhh-hhhH---HHHHHHHhc-ccchHHHHHHHHhCCChHHHHHHHHHHhhhc
Confidence            6899999999999999999999999999999 8876   788888876 6  899999999 567789999999999999


Q ss_pred             CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC-hhHHHHH
Q 015728          262 STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD-HEGSENA  340 (401)
Q Consensus       262 ~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~-~~~~~~a  340 (401)
                      .+.+.+..++++|.+|.+++||+   ++.....-..+..+.+++.++-|--.|+ +.|++.+||+ +++.++ ++.+-+|
T Consensus       280 sdt~Yq~eiv~ag~lP~lv~Llq---s~~~plilasVaCIrnisihplNe~lI~-dagfl~pLVr-lL~~~dnEeiqchA  354 (550)
T KOG4224|consen  280 SDTEYQREIVEAGSLPLLVELLQ---SPMGPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVR-LLRAGDNEEIQCHA  354 (550)
T ss_pred             ccchhhhHHHhcCCchHHHHHHh---CcchhHHHHHHHHHhhcccccCccccee-cccchhHHHH-HHhcCCchhhhhhH
Confidence            99999999999999999999998   6777777888899999999998888886 9999999999 566654 4599999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      +.+|++|+..++..+..+.++|+|+.|..|+.++ .-.+++.-.+.+.+|+
T Consensus       355 vstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~La  404 (550)
T KOG4224|consen  355 VSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLA  404 (550)
T ss_pred             HHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHH
Confidence            9999999998888888999999999999999888 5556666555555554

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.4e-27  Score=212.96  Aligned_cols=263  Identities=13%  Similarity=0.164  Sum_probs=232.0

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE  187 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~  187 (401)
                      +...|+.|+..|.++.... +||+.++.+|++|.||.++++++.        ++|+++.. .+.+++.+... +++++++
T Consensus       180 dirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll~s~d~--------dvqyyctt-aisnIaVd~~~-Rk~Laqa  248 (550)
T KOG4224|consen  180 DIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLLKSGDL--------DVQYYCTT-AISNIAVDRRA-RKILAQA  248 (550)
T ss_pred             hhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhhccCCh--------hHHHHHHH-HhhhhhhhHHH-HHHHHhc
Confidence            4668999999999998765 499999999999999999999884        59999999 99999976654 4566577


Q ss_pred             C--chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-CchhHHHHHHHHHHhcCCC
Q 015728          188 S--KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSEASDAGVRAFSALCSTE  264 (401)
Q Consensus       188 g--~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~~~  264 (401)
                      +  .|+.|+++++++++.+|..|..+|.+| +.+.   ++...|+++ |.+|.+|.+|++ ..+..-+.+.+++|++..+
T Consensus       249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl-asdt---~Yq~eiv~a-g~lP~lv~Llqs~~~plilasVaCIrnisihp  323 (550)
T KOG4224|consen  249 EPKLVPALVDLMDDGSDKVKCQAGLALRNL-ASDT---EYQREIVEA-GSLPLLVELLQSPMGPLILASVACIRNISIHP  323 (550)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHhhh-cccc---hhhhHHHhc-CCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence            7  899999999999999999999999999 8876   899999997 889999999954 4568889999999999999


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHH
Q 015728          265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINS  343 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~  343 (401)
                      -|-..|+++|.+.|||++|+-  +.+++.+-.|..+|++|+.. ..++..|. +.|+||.+++ ++.++.-.+++.-..+
T Consensus       324 lNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAasse~n~~~i~-esgAi~kl~e-L~lD~pvsvqseisac  399 (550)
T KOG4224|consen  324 LNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAASSEHNVSVIR-ESGAIPKLIE-LLLDGPVSVQSEISAC  399 (550)
T ss_pred             CcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhhhhhhhHHHh-hcCchHHHHH-HHhcCChhHHHHHHHH
Confidence            999999999999999999995  56677999999999999984 55777775 8999999999 5566666888888888


Q ss_pred             HHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          344 LMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       344 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +..|+.+ ++.+..+.+.|.++.|+.++.+. +.+++.+|+++|-.|+.
T Consensus       400 ~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  400 IAQLALN-DNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS  446 (550)
T ss_pred             HHHHHhc-cccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence            8888876 46788999999999999999888 99999999999999886

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.93  E-value=5.4e-25  Score=199.28  Aligned_cols=278  Identities=17%  Similarity=0.148  Sum_probs=235.3

Q ss_pred             hcChHHHHHHHHHHHHHHhcCch-hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728          106 EATLETKLQIVQKIHVVLRESPP-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL  184 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v  184 (401)
                      +++-+.|..|+.+.|.+.+.... --+.++++|++|.+|.++.+...       ...+.+|+| +|.|++.+.....+++
T Consensus        82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~-------~mlqfEAaW-alTNiaSGtt~QTkvV  153 (526)
T COG5064          82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQR-------DMLQFEAAW-ALTNIASGTTQQTKVV  153 (526)
T ss_pred             hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcch-------hHHHHHHHH-HHhhhccCcccceEEE
Confidence            46789999999999998865433 56677799999999999964432       348899999 9999998888888888


Q ss_pred             ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCC--chhHHHHHHHHHHhc
Q 015728          185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHN--SEASDAGVRAFSALC  261 (401)
Q Consensus       185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~--~~~~~~a~~aL~~Ls  261 (401)
                      +++|++|.++.+|.+++.++++.+.|+|.|+ +.+++  ..|..+... |++.+++.+| +..  ....+++.|.|.|||
T Consensus       154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNi-AGDS~--~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlc  229 (526)
T COG5064         154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNI-AGDSE--GCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLC  229 (526)
T ss_pred             EeCCchHHHHHHHcCchHHHHHHHHHHhccc-cCCch--hHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence            8999999999999999999999999999999 98873  666666664 9999999999 333  469999999999999


Q ss_pred             CCC--chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHH
Q 015728          262 STE--TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSEN  339 (401)
Q Consensus       262 ~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~  339 (401)
                      ...  ..-+.-+ .-++|.|.+|+.   +.++++...|+++|.+|+..+..+..++.+.|.-+.||++ +.+.+..++..
T Consensus       230 RGknP~P~w~~i-sqalpiL~KLiy---s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvEl-Ls~~sa~iqtP  304 (526)
T COG5064         230 RGKNPPPDWSNI-SQALPILAKLIY---SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVEL-LSHESAKIQTP  304 (526)
T ss_pred             CCCCCCCchHHH-HHHHHHHHHHHh---hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHH-hcCccccccCH
Confidence            643  3222222 237999999999   7889999999999999999988887777799999999995 55666688999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhccC
Q 015728          340 AINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKHV  401 (401)
Q Consensus       340 a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~~  401 (401)
                      |++...||..+++...+.++..|+++.+..+|.+. .+..|+.|.|.+..+.--..|++++|
T Consensus       305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqav  365 (526)
T COG5064         305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAV  365 (526)
T ss_pred             HHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHH
Confidence            99999999999888888999999999999999887 77999999999988877677777653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.91  E-value=3e-23  Score=188.06  Aligned_cols=284  Identities=11%  Similarity=0.151  Sum_probs=240.4

Q ss_pred             CChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHH
Q 015728           90 ATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV  169 (401)
Q Consensus        90 ~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~  169 (401)
                      ++...++.+++.+.+... .=.|++|++.|.+.+++.....+.++++|++|.+++||.++..        ++++.++| +
T Consensus       111 IdaGvVpRfvefm~~~q~-~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavW-A  180 (526)
T COG5064         111 IDAGVVPRFVEFMDEIQR-DMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVW-A  180 (526)
T ss_pred             HhccccHHHHHHHHhcch-hHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHH-H
Confidence            556889999998854432 3467899999999999998888888899999999999998875        49999999 9


Q ss_pred             HHhhcCCchhhhhhcccCCchHHHHHHhhcCCH--HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCC
Q 015728          170 QKLLLVGETESLNLLNEESKMESFIVLFEHGSC--SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHN  246 (401)
Q Consensus       170 L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~--~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~  246 (401)
                      |.|++.+.+.++..+-+.|++.+++.+|.++..  ....++.|+|.|| +....-+..-..|.   -++|.|.+++ ..+
T Consensus       181 LGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl-cRGknP~P~w~~is---qalpiL~KLiys~D  256 (526)
T COG5064         181 LGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL-CRGKNPPPDWSNIS---QALPILAKLIYSRD  256 (526)
T ss_pred             hccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh-hCCCCCCCchHHHH---HHHHHHHHHHhhcC
Confidence            999999998999998899999999999987644  7778999999999 54321012223332   4689999999 578


Q ss_pred             chhHHHHHHHHHHhcCCCch-hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHH
Q 015728          247 SEASDAGVRAFSALCSTETN-RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALV  325 (401)
Q Consensus       247 ~~~~~~a~~aL~~Ls~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv  325 (401)
                      +++...|.|||.+|+..+.. ...+++.|.-+.|+++|.   +++..++..|+..+.++....+.+.+++.+.|+++.+-
T Consensus       257 ~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs---~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~  333 (526)
T COG5064         257 PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS---HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFR  333 (526)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc---CccccccCHHHHhhcCeeecCccceehheecccHHHHH
Confidence            89999999999999976665 455679999999999999   67888899999999999999888887777999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          326 KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      . ++.+.....++.|.+.+.||..++.+..+.+++.+.+|+|+++|... .-..|+.|.|++-....
T Consensus       334 ~-lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNats  398 (526)
T COG5064         334 S-LLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATS  398 (526)
T ss_pred             H-HhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhc
Confidence            9 56665558899999999999999888888999999999999999887 88999999999876654

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.83  E-value=3.6e-18  Score=155.03  Aligned_cols=284  Identities=15%  Similarity=0.206  Sum_probs=236.5

Q ss_pred             CChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHH
Q 015728           90 ATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV  169 (401)
Q Consensus        90 ~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~  169 (401)
                      .|.++.+.+.++|....++.+.....++.++..|-.++.||+.|.+.|+.+.+...|.....       .++..+..+ +
T Consensus       142 ~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk-------~~~VRel~~-a  213 (461)
T KOG4199|consen  142 FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGK-------TRTVRELYD-A  213 (461)
T ss_pred             hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCc-------cHHHHHHHH-H
Confidence            66789999999998888889999999999999999999999999999999999988865543       236667777 7


Q ss_pred             HHhhcCCch----------hhhhhcccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728          170 QKLLLVGET----------ESLNLLNEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE  238 (401)
Q Consensus       170 L~~l~~~~~----------~~~~~v~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~  238 (401)
                      ++.|..+|+          +.+.+. ..|++..|++.++-+ ++.+...+..+|..| +..+   +.++.|.++ |++..
T Consensus       214 ~r~l~~dDDiRV~fg~ah~hAr~ia-~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l-AVr~---E~C~~I~e~-GGl~t  287 (461)
T KOG4199|consen  214 IRALLTDDDIRVVFGQAHGHARTIA-KEGILTALTEALQAGIDPDSLVSLSTTLKAL-AVRD---EICKSIAES-GGLDT  287 (461)
T ss_pred             HHHhcCCCceeeecchhhHHHHHHH-HhhhHHHHHHHHHccCCccHHHHHHHHHHHH-HHHH---HHHHHHHHc-cCHHH
Confidence            777777664          335455 567888999999866 677888888999999 8876   999999997 77899


Q ss_pred             HHHHccC-C----chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhhHH
Q 015728          239 IISLVHH-N----SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENSKD  312 (401)
Q Consensus       239 Lv~lL~~-~----~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~~~  312 (401)
                      |++++.+ +    .++.+.++..|+.|+.+++++..||+.|+.+.++.++..+ .+++.+.+.++.++..|+ +.++...
T Consensus       288 l~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-~~~p~Vi~~~~a~i~~l~LR~pdhsa  366 (461)
T KOG4199|consen  288 LLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-SDDPLVIQEVMAIISILCLRSPDHSA  366 (461)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-CCChHHHHHHHHHHHHHHhcCcchHH
Confidence            9999943 2    2377899999999999999999999999999999999754 678899999999999999 5788888


Q ss_pred             HHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          313 ALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       313 ~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      .++ +.|+-...|+.|-... ...++++|.+.+.||...+.+.+ +.+-..+++.|+..-... .+..+..|..+||-|.
T Consensus       367 ~~i-e~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~-~~~l~~GiE~Li~~A~~~-h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  367 KAI-EAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR-TILLANGIEKLIRTAKAN-HETCEAAAKAALRDLG  443 (461)
T ss_pred             HHH-hcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc-chHHhccHHHHHHHHHhc-CccHHHHHHHHHHhcC
Confidence            886 8888888888776554 34578999999999999988887 556666788888887776 7778888888898765

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.81  E-value=6.3e-18  Score=172.80  Aligned_cols=217  Identities=12%  Similarity=0.138  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728          160 QFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI  239 (401)
Q Consensus       160 ~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L  239 (401)
                      .+...+.. +|.||+.+..... .+.+.|.|+.|+.+|++++.+....++.+|.+| |...   +||..|++. |+|++|
T Consensus       264 qLlrv~~~-lLlNLAed~~ve~-kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL-Si~~---ENK~~m~~~-giV~kL  336 (708)
T PF05804_consen  264 QLLRVAFY-LLLNLAEDPRVEL-KMVNKGIVSLLVKCLDRENEELLILAVTFLKKL-SIFK---ENKDEMAES-GIVEKL  336 (708)
T ss_pred             HHHHHHHH-HHHHHhcChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCCH---HHHHHHHHc-CCHHHH
Confidence            35667777 8999996654444 455889999999999999999999999999999 9987   999999986 999999


Q ss_pred             HHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC
Q 015728          240 ISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP  318 (401)
Q Consensus       240 v~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~  318 (401)
                      ++++. ++.+.+..++++|+|||.++++|.+|++.|+||.|+.+|.   ++  ..+..++.+|++|+.++++|..+. ..
T Consensus       337 ~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~---d~--~~~~val~iLy~LS~dd~~r~~f~-~T  410 (708)
T PF05804_consen  337 LKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK---DP--NFREVALKILYNLSMDDEARSMFA-YT  410 (708)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC---CC--chHHHHHHHHHHhccCHhhHHHHh-hc
Confidence            99994 5667999999999999999999999999999999999998   33  356779999999999999999996 88


Q ss_pred             CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728          319 NGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       319 g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  394 (401)
                      ++||.++++++..+++..+..++.++.||+.+. ...+.+.+.|+++.|+.......+    ....+++|.++.|.
T Consensus       411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~  481 (708)
T PF05804_consen  411 DCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHD  481 (708)
T ss_pred             chHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcC
Confidence            999999998888777677777889999999875 555789999999999988655422    33457888888854

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.79  E-value=2.9e-17  Score=167.99  Aligned_cols=257  Identities=14%  Similarity=0.140  Sum_probs=212.7

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES  188 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g  188 (401)
                      ...-+.+...|.+++... .++..+.+.|+|+.|+++|.+.+        .++...+++ +|..|+...++ +..+.+.|
T Consensus       263 eqLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n--------~ellil~v~-fLkkLSi~~EN-K~~m~~~g  331 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDREN--------EELLILAVT-FLKKLSIFKEN-KDEMAESG  331 (708)
T ss_pred             HHHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHHHcCCHHH-HHHHHHcC
Confidence            334455666677877654 58888889999999999998775        458888899 99999987765 45566899


Q ss_pred             chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcCCCchhH
Q 015728          189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRK  268 (401)
Q Consensus       189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~  268 (401)
                      .|++|++++++++.+.+..+..+|.|| |.+.   ++|..|+.. |+||.|+.+|..+ ..+..+..+|++||.++++|.
T Consensus       332 iV~kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~---~~R~~mV~~-GlIPkLv~LL~d~-~~~~val~iLy~LS~dd~~r~  405 (708)
T PF05804_consen  332 IVEKLLKLLPSENEDLVNVALRLLFNL-SFDP---ELRSQMVSL-GLIPKLVELLKDP-NFREVALKILYNLSMDDEARS  405 (708)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHh-CcCH---HHHHHHHHC-CCcHHHHHHhCCC-chHHHHHHHHHHhccCHhhHH
Confidence            999999999999999999999999999 9987   899999986 9999999999643 355679999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                      .+...++||.|+++|-+  .++..+...+++++.||+.+..+...+. +.|+++.|++..++..++    ..+.++.||+
T Consensus       406 ~f~~TdcIp~L~~~Ll~--~~~~~v~~eliaL~iNLa~~~rnaqlm~-~g~gL~~L~~ra~~~~D~----lLlKlIRNiS  478 (708)
T PF05804_consen  406 MFAYTDCIPQLMQMLLE--NSEEEVQLELIALLINLALNKRNAQLMC-EGNGLQSLMKRALKTRDP----LLLKLIRNIS  478 (708)
T ss_pred             HHhhcchHHHHHHHHHh--CCCccccHHHHHHHHHHhcCHHHHHHHH-hcCcHHHHHHHHHhcccH----HHHHHHHHHH
Confidence            99999999999999875  4566677778999999999999998887 778899999977766553    2557999999


Q ss_pred             cCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          349 CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       349 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      .+++..+..+  .+.|..|+.++..+.++...-.+.++|..|.
T Consensus       479 ~h~~~~k~~f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  479 QHDGPLKELF--VDFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             hcCchHHHHH--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            9986665444  3588999999887766777777777777764

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.69  E-value=8.2e-16  Score=154.20  Aligned_cols=278  Identities=14%  Similarity=0.128  Sum_probs=218.3

Q ss_pred             HHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC
Q 015728           97 TLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG  176 (401)
Q Consensus        97 ~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~  176 (401)
                      ...+.|.  ...+..|..|...|+.+|..+.+.|..+.+.|+|+.||.+|.+...        ++|..|++ +|+||..+
T Consensus       237 e~i~mL~--~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--------evq~~acg-aLRNLvf~  305 (717)
T KOG1048|consen  237 EVISMLM--SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--------EVQRQACG-ALRNLVFG  305 (717)
T ss_pred             HHHHHHh--ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--------HHHHHHHH-HHHhhhcc
Confidence            3444555  3456799999999999999999999999999999999999998874        59999999 99999976


Q ss_pred             chh--hhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----cC----
Q 015728          177 ETE--SLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----HH----  245 (401)
Q Consensus       177 ~~~--~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~~----  245 (401)
                      ...  ++-.|.+.++|+.++++|+. ++.++++..+.+|+|| +..+   ..|..|..  .+++.|..-+    ++    
T Consensus       306 ~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNL-SS~D---~lK~~ii~--~al~tLt~~vI~P~Sgw~~~  379 (717)
T KOG1048|consen  306 KSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNL-SSND---ALKMLIIT--SALSTLTDNVIIPHSGWEEE  379 (717)
T ss_pred             cCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcc-cchh---HHHHHHHH--HHHHHHHHhhcccccccCCC
Confidence            655  55556689999999999986 7999999999999999 7665   78888876  4678887755    21    


Q ss_pred             -------CchhHHHHHHHHHHhcC-CCchhHHHHh-cCcHHHHHHHHHhh---ccccchHHHHHHHHHHHHhCCHh----
Q 015728          246 -------NSEASDAGVRAFSALCS-TETNRKTLVQ-EGAINGLIAYISNA---LTRERSLAAIAMARIEQLLAIEN----  309 (401)
Q Consensus       246 -------~~~~~~~a~~aL~~Ls~-~~~n~~~iv~-~G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~~~----  309 (401)
                             +.++..+++.+|+|++. ..+.|.+|.+ .|.|..|+..+++.   ..-+...+++++.+|.||+..-+    
T Consensus       380 ~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp  459 (717)
T KOG1048|consen  380 PAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVP  459 (717)
T ss_pred             CcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcC
Confidence                   13478999999999996 7788999987 78999999999753   13356788999999999985211    


Q ss_pred             --hH--------------------------HHHH---------------------hCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          310 --SK--------------------------DALI---------------------NNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       310 --~~--------------------------~~~~---------------------~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                        .+                          ....                     -+..+|..-..+|....+....|.+
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEas  539 (717)
T KOG1048|consen  460 PKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEAS  539 (717)
T ss_pred             HhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHh
Confidence              00                          0100                     0112344434434455677899999


Q ss_pred             HHHHHHHhcCCH----HHHHHH-HHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          341 INSLMMICCDSL----QAREEA-ICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       341 ~~~L~~l~~~~~----~~~~~~-~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +.+|.||+....    ..+..+ .++.+.+.|++|++.+ ++.+-+.++.+|+.++.
T Consensus       540 aGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~  595 (717)
T KOG1048|consen  540 AGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSR  595 (717)
T ss_pred             hhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhcc
Confidence            999999987753    455566 7999999999999999 88888899999998876

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.63  E-value=3e-16  Score=115.43  Aligned_cols=72  Identities=42%  Similarity=0.794  Sum_probs=62.2

Q ss_pred             CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCC
Q 015728            9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGG   80 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~   80 (401)
                      +|++|.||||+++|.+||.+++||+|++.||++|+..+...||.|+..+...++.+|..++..|+.|..+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            478999999999999999999999999999999999768899999999998899999999999999999873

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.62  E-value=4.7e-14  Score=147.47  Aligned_cols=279  Identities=14%  Similarity=0.104  Sum_probs=209.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcc----cchhhhHHHHHHHHHHHHHhhcCCchhhhhh
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAES----KFSQVYVQFVEESLSCVQKLLLVGETESLNL  183 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~----~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~  183 (401)
                      +-+-|..|+.....-.+.++++|..+.+.|++..+-.||.-....    .-+....-++.+|.. +|.||++++.++|..
T Consensus       310 ~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~M-ALTNLTFGDv~NKa~  388 (2195)
T KOG2122|consen  310 SDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGM-ALTNLTFGDVANKAT  388 (2195)
T ss_pred             ccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH-Hhhccccccccchhh
Confidence            445566344444444456677999999999999999987422110    011235668899999 999999999988776


Q ss_pred             c-ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cC-CchhHHHHHHHHHHh
Q 015728          184 L-NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HH-NSEASDAGVRAFSAL  260 (401)
Q Consensus       184 v-~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~-~~~~~~~a~~aL~~L  260 (401)
                      + ...|+|..+|..|.+...+..+--+.+|.|| |...+. ..|..+-+. |-+-.|+..- +. .....+..+.|||||
T Consensus       389 LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNL-SWRAD~-nmKkvLrE~-GsVtaLa~~al~~~kEsTLKavLSALWNL  465 (2195)
T KOG2122|consen  389 LCSQRGFMEAVVAQLISAPEELLQVYASVLRNL-SWRADS-NMKKVLRET-GSVTALAACALRNKKESTLKAVLSALWNL  465 (2195)
T ss_pred             hhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhc-cccccc-cHHHHHHhh-hhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence            6 5679999999999999889999999999999 886431 445555554 7778887755 43 334789999999999


Q ss_pred             c-CCCchhHHHHh-cCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhC---CHhhHHHHHhCCCcHHHHHHHHHhcCCh
Q 015728          261 C-STETNRKTLVQ-EGAINGLIAYISNA-LTRERSLAAIAMARIEQLLA---IENSKDALINNPNGVYALVKMVFRVSDH  334 (401)
Q Consensus       261 s-~~~~n~~~iv~-~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~---~~~~~~~~~~~~g~i~~Lv~~l~~~~~~  334 (401)
                      + .+.+|+..|-+ -|++-+||.+|.-. ++..-.+.+.|-++|.|.+.   ..+..++|.++..++..|++ .+++.+-
T Consensus       466 SAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ-~LKS~SL  544 (2195)
T KOG2122|consen  466 SAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQ-HLKSHSL  544 (2195)
T ss_pred             hhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHH-Hhhhcce
Confidence            9 57789999976 78999999999742 12234677888899988774   23344444468899999999 4666666


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          335 EGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       335 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      .+..++..+||||+..+++-++.+++.|+|+.|..|+.+.+..-.+-.|+++..+|.
T Consensus       545 TiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  545 TIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             EEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence            788899999999999999989999999999999999988744455555555544443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=5.2e-12  Score=115.29  Aligned_cols=278  Identities=15%  Similarity=0.230  Sum_probs=211.9

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      +.+...-+.++..|-.+...-|    .+.++-+...++.+|....++      .++-..-+. .+..-+..++.+++.++
T Consensus       118 ~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~------~dlt~~~~~-~v~~Ac~~hE~nrQ~~m  186 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVES------EEVTLLTLQ-WLQKACIMHEVNRQLFM  186 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccch------HHHHHHHHH-HHHHHHHHhHHHHHHHH
Confidence            3456677888888888887776    455777899999999765543      344444444 33333334455566666


Q ss_pred             cCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccc-------hhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHH
Q 015728          186 EESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHE-------TKELCCKLGKDDRLLREIISLVH--HNSEASDAGVR  255 (401)
Q Consensus       186 ~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~-------~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~  255 (401)
                      +.+.++.+...|. .|.......+.++++-| -.+++       ...+.+.|+.. |++..|+..+.  -++.....+..
T Consensus       187 ~~~il~Li~~~l~~~gk~~~VRel~~a~r~l-~~dDDiRV~fg~ah~hAr~ia~e-~~l~~L~Eal~A~~dp~~L~~l~~  264 (461)
T KOG4199|consen  187 ELKILELILQVLNREGKTRTVRELYDAIRAL-LTDDDIRVVFGQAHGHARTIAKE-GILTALTEALQAGIDPDSLVSLST  264 (461)
T ss_pred             HhhHHHHHHHHHcccCccHHHHHHHHHHHHh-cCCCceeeecchhhHHHHHHHHh-hhHHHHHHHHHccCCccHHHHHHH
Confidence            8998888887764 45455666777888888 55542       12445556553 66788998883  35678888999


Q ss_pred             HHHHhcCCCchhHHHHhcCcHHHHHHHHHhhc-cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-C
Q 015728          256 AFSALCSTETNRKTLVQEGAINGLIAYISNAL-TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-D  333 (401)
Q Consensus       256 aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~  333 (401)
                      +|..|+..++..+.+++.|++..|++++.+++ .+...+...++.+|..|+.+++.+..|+ +.|+.+.++.++++.+ +
T Consensus       265 tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV-~~gg~~~ii~l~~~h~~~  343 (461)
T KOG4199|consen  265 TLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIV-EKGGLDKIITLALRHSDD  343 (461)
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHH-HhcChHHHHHHHHHcCCC
Confidence            99999999999999999999999999998521 1233466778999999999999999998 7899999999888764 6


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC-HHHHHHHHHHHHHHHHhhHHh
Q 015728          334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS-NRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      |.+.+.+..++.-||-..++....+++.|+-..-++-|+.-+. -.+++.|.+++|.+..+..|-
T Consensus       344 p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~  408 (461)
T KOG4199|consen  344 PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN  408 (461)
T ss_pred             hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence            7788889999999998888777799999999999999976544 368999999999998866553

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.54  E-value=6.5e-13  Score=121.27  Aligned_cols=198  Identities=13%  Similarity=0.140  Sum_probs=168.0

Q ss_pred             cCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC
Q 015728          186 EESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCST  263 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~  263 (401)
                      +++.++.|+.+|++ .++..++.+..++.+. +..+   .++..|.+. |+++.+..+| .+++.++..|+++|.|++.+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~---~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~   84 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNS-AAFP---FNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVN   84 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccCh---hHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence            77889999999985 4789999999999999 8776   889999886 7889999999 46778999999999999999


Q ss_pred             CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHH
Q 015728          264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINS  343 (401)
Q Consensus       264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~  343 (401)
                      .+|+..+-.  .|+.+.+..... .-+..++..++.+|.+|+..++++..+.   +.|+.++. |+..++...+.+++++
T Consensus        85 ~en~~~Ik~--~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~-LL~~G~~~~k~~vLk~  157 (254)
T PF04826_consen   85 DENQEQIKM--YIPQVCEETVSS-PLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLS-LLSSGSEKTKVQVLKV  157 (254)
T ss_pred             hhhHHHHHH--HHHHHHHHHhcC-CCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHH-HHHcCChHHHHHHHHH
Confidence            999998743  688888876532 3467889999999999999888888875   47999999 5677787999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          344 LMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       344 L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      |++|+.+ +...++++.++++..|+.|++...+...-..+..++..+.+++.-
T Consensus       158 L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~  209 (254)
T PF04826_consen  158 LVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK  209 (254)
T ss_pred             HHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence            9999987 566679999999999999998775677788888888888775543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.54  E-value=6.7e-13  Score=121.21  Aligned_cols=194  Identities=14%  Similarity=0.136  Sum_probs=161.5

Q ss_pred             HhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 015728          134 IQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVE  213 (401)
Q Consensus       134 ~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~  213 (401)
                      .+++-+..|+.+|++..+       +.+++.++. ++.+.+..+ .++.++.+.|+++.+..+|.++++.+|+.|..+|.
T Consensus         9 l~~~~l~~Ll~lL~~t~d-------p~i~e~al~-al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~   79 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTED-------PFIQEKALI-ALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALN   79 (254)
T ss_pred             cCHHHHHHHHHHHhcCCC-------hHHHHHHHH-HHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHH
Confidence            467788999999986543       559999999 999887544 56778889999999999999999999999999999


Q ss_pred             HHHhcccchhhhhhhhccchHHHHHHHHHc-c--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcccc
Q 015728          214 VIISSSHETKELCCKLGKDDRLLREIISLV-H--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRE  290 (401)
Q Consensus       214 ~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~  290 (401)
                      |+ +...   ++...|-   ..|+.+.... +  -+.+.+..++++|.||+..++++..+..  .||.++++|.   .++
T Consensus        80 Nl-s~~~---en~~~Ik---~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~---~G~  147 (254)
T PF04826_consen   80 NL-SVND---ENQEQIK---MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS---SGS  147 (254)
T ss_pred             hc-CCCh---hhHHHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH---cCC
Confidence            99 8876   7888773   3467777755 3  2567999999999999988888777754  7999999999   688


Q ss_pred             chHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcC
Q 015728          291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCD  350 (401)
Q Consensus       291 ~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~  350 (401)
                      ..++..++.+|.+|+.++.....++ ...+...|+. ++..+ +...-..++....||..+
T Consensus       148 ~~~k~~vLk~L~nLS~np~~~~~Ll-~~q~~~~~~~-Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  148 EKTKVQVLKVLVNLSENPDMTRELL-SAQVLSSFLS-LFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             hHHHHHHHHHHHHhccCHHHHHHHH-hccchhHHHH-HHccCCccHHHHHHHHHHHHHHHh
Confidence            8999999999999999999888886 6688999999 55543 556677788888888654

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.51  E-value=1.3e-13  Score=144.26  Aligned_cols=227  Identities=12%  Similarity=0.097  Sum_probs=189.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcc
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLN  185 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~  185 (401)
                      ....++.|.+.|.||..++..||..+.. -|++..+|..|.+..+        +++...+. +|+||+ ..|.+.++++.
T Consensus       364 ~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe--------eL~QV~As-vLRNLSWRAD~nmKkvLr  434 (2195)
T KOG2122|consen  364 CNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE--------ELLQVYAS-VLRNLSWRADSNMKKVLR  434 (2195)
T ss_pred             HHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH--------HHHHHHHH-HHHhccccccccHHHHHH
Confidence            3567899999999999999999999986 7999999999988764        37777777 999998 44556788998


Q ss_pred             cCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C----CchhHHHHHHHHHH
Q 015728          186 EESKMESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H----NSEASDAGVRAFSA  259 (401)
Q Consensus       186 ~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~----~~~~~~~a~~aL~~  259 (401)
                      +.|.+..|+.+. +............+|+|| +....  +||..|+...|++.+||.+|. .    ...+.+.|-.+|+|
T Consensus       435 E~GsVtaLa~~al~~~kEsTLKavLSALWNL-SAHct--eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRN  511 (2195)
T KOG2122|consen  435 ETGSVTALAACALRNKKESTLKAVLSALWNL-SAHCT--ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRN  511 (2195)
T ss_pred             hhhhHHHHHHHHHHhcccchHHHHHHHHhhh-hhccc--ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHH
Confidence            999999998764 444445556677899999 65543  999999998999999999992 2    13589999999999


Q ss_pred             hcC----CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhhHHHHHhCCCcHHHHHHHHHhcCCh
Q 015728          260 LCS----TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENSKDALINNPNGVYALVKMVFRVSDH  334 (401)
Q Consensus       260 Ls~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~  334 (401)
                      .++    +++.|..+.+..++..|+++|.   +.+-.++-+++++|+||+ ++++.+..++ +.|+|+.|-. |+++...
T Consensus       512 VSS~IAt~E~yRQILR~~NCLq~LLQ~LK---S~SLTiVSNaCGTLWNLSAR~p~DQq~Lw-D~gAv~mLrn-LIhSKhk  586 (2195)
T KOG2122|consen  512 VSSLIATCEDYRQILRRHNCLQTLLQHLK---SHSLTIVSNACGTLWNLSARSPEDQQMLW-DDGAVPMLRN-LIHSKHK  586 (2195)
T ss_pred             HHhHhhccchHHHHHHHhhHHHHHHHHhh---hcceEEeecchhhhhhhhcCCHHHHHHHH-hcccHHHHHH-HHhhhhh
Confidence            874    6667888889999999999999   667788999999999998 5788888887 8999999999 6777777


Q ss_pred             hHHHHHHHHHHHHhcCC
Q 015728          335 EGSENAINSLMMICCDS  351 (401)
Q Consensus       335 ~~~~~a~~~L~~l~~~~  351 (401)
                      .+.+-++.+|.||-.+-
T Consensus       587 MIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  587 MIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhHHHHHHHHhcCC
Confidence            88888999999987664

>smart00504 Ubox Modified RING finger domain

Probab=99.50  E-value=2.8e-14  Score=102.30  Aligned_cols=63  Identities=49%  Similarity=0.881  Sum_probs=58.7

Q ss_pred             cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHH
Q 015728           12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQW   75 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~   75 (401)
                      +|.||||+++|.+||.++|||+||+.||.+|+.+ ...||.|+..++..++.+|..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            4789999999999999999999999999999985 67899999999888999999999999876

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.48  E-value=4.6e-12  Score=127.59  Aligned_cols=277  Identities=14%  Similarity=0.134  Sum_probs=207.8

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch--hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP--ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +..|+++|..  ...+.|+.|...|+||..++..  |+-.|.+.|+|+.|+.+|+...+       .++++.+.. +|+|
T Consensus       277 I~kLv~Ll~~--~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D-------~ev~e~iTg-~LWN  346 (717)
T KOG1048|consen  277 IPKLVALLDH--RNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQD-------DEVRELITG-ILWN  346 (717)
T ss_pred             HHHHHHHhcC--CcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcc-------hHHHHHHHH-HHhc
Confidence            3345555542  3578999999999999988777  99999999999999999986432       469999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhh---c----C-------CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFE---H----G-------SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE  238 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~---~----~-------~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~  238 (401)
                      |+..| ..+..+. ..+++.|-+-+-   +    +       ..++-.+++..|.|+ +...  .+.++.+.+..|.|..
T Consensus       347 LSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNl-Ss~~--~eaR~~mr~c~GLIda  421 (717)
T KOG1048|consen  347 LSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNL-SSAG--QEAREQMRECDGLIDA  421 (717)
T ss_pred             ccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccc-cchh--HHHHHHHhhccchHHH
Confidence            99764 4454543 345666654331   1    1       134557888999999 5533  2778888877788888


Q ss_pred             HHHHcc-------CCchhHHHHHHHHHHhc-CCC----------------------------------------------
Q 015728          239 IISLVH-------HNSEASDAGVRAFSALC-STE----------------------------------------------  264 (401)
Q Consensus       239 Lv~lL~-------~~~~~~~~a~~aL~~Ls-~~~----------------------------------------------  264 (401)
                      |+..++       .+...+++++..|+||+ .-+                                              
T Consensus       422 L~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~  501 (717)
T KOG1048|consen  422 LLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPI  501 (717)
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCC
Confidence            876661       13346666666666665 111                                              


Q ss_pred             -------------------------------------------------c-----hhHHH-HhcCcHHHHHHHHHhhccc
Q 015728          265 -------------------------------------------------T-----NRKTL-VQEGAINGLIAYISNALTR  289 (401)
Q Consensus       265 -------------------------------------------------~-----n~~~i-v~~G~v~~Lv~lL~~~~~~  289 (401)
                                                                       -     .+..+ .+..+.|+|+++|.   .+
T Consensus       502 pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~---~~  578 (717)
T KOG1048|consen  502 PERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR---ND  578 (717)
T ss_pred             cccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh---cC
Confidence                                                             0     12223 45667899999999   68


Q ss_pred             cchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 015728          290 ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD------HEGSENAINSLMMICCDSLQAREEAICAGV  363 (401)
Q Consensus       290 ~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  363 (401)
                      +..++..++.+|.||+.+..++..|.  .++++.||+ .+..+.      ......+..+|+++...+....+.+.+.++
T Consensus       579 ~~~vv~s~a~~LrNls~d~rnk~lig--k~a~~~lv~-~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g  655 (717)
T KOG1048|consen  579 DSDVVRSAAGALRNLSRDIRNKELIG--KYAIPDLVR-CLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG  655 (717)
T ss_pred             CchHHHHHHHHHhhhccCchhhhhhh--cchHHHHHH-hCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC
Confidence            88999999999999999999999995  589999999 555432      356677888999999777778889999999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          364 LTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       364 v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ++.|+.+..+..+++.-+.|..+|..+-.
T Consensus       656 ~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  656 IPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             hHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            99999999887788999999998888766

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.41  E-value=8.1e-11  Score=110.77  Aligned_cols=270  Identities=14%  Similarity=0.144  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhcc-CCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCc
Q 015728          111 TKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFG-KAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESK  189 (401)
Q Consensus       111 ~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~  189 (401)
                      ...+....+-.-..+++.-+-.++++|.+..++.+++. ++.. ...+....-..+.. +...|..+|+....+-..+..
T Consensus       239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t-~k~d~~~l~k~~~e-l~vllltGDeSMq~L~~~p~~  316 (604)
T KOG4500|consen  239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFT-KKTDMLNLFKRIAE-LDVLLLTGDESMQKLHADPQF  316 (604)
T ss_pred             chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhccccc-chHHHHHHHHhhhh-HhhhhhcCchHHHHHhcCcHH
Confidence            34455556666666777789999999999999999976 2221 01122223344444 555555566555545533337


Q ss_pred             hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-----CCchhHHHHHHHHHHhcCC
Q 015728          190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-----HNSEASDAGVRAFSALCST  263 (401)
Q Consensus       190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-----~~~~~~~~a~~aL~~Ls~~  263 (401)
                      +..+++.++|.+...+..++.+|.|+ +..+   +++-.+++. |++..|+.+| +     ++.+.+.+++.||+||...
T Consensus       317 l~~~~sw~~S~d~~l~t~g~LaigNf-aR~D---~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP  391 (604)
T KOG4500|consen  317 LDFLESWFRSDDSNLITMGSLAIGNF-ARRD---DICIQLVQK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP  391 (604)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhh-hccc---hHHHHHHHH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence            88999999999999999999999999 7665   889999884 9999999999 2     3567999999999999999


Q ss_pred             CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHHHHHHhcCCh-hHHHHHH
Q 015728          264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALVKMVFRVSDH-EGSENAI  341 (401)
Q Consensus       264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv~~l~~~~~~-~~~~~a~  341 (401)
                      ..||..++.+|+++.++..|.   ...+.++..-+.+|+.+....+ ...++..+..-+..||++ .++++. .+.-...
T Consensus       392 v~nka~~~~aGvteaIL~~lk---~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W-sks~D~aGv~gESn  467 (604)
T KOG4500|consen  392 VSNKAHFAPAGVTEAILLQLK---LASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW-SKSPDFAGVAGESN  467 (604)
T ss_pred             CCchhhccccchHHHHHHHHH---hcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh-hhCCccchhhhhhh
Confidence            999999999999999999999   6788899999999999987766 556777777888899986 455443 3566678


Q ss_pred             HHHHHHhcCC--HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          342 NSLMMICCDS--LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       342 ~~L~~l~~~~--~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +.|..+.+|+  .++...+.+.|+|..++.++... .-..+..|.-+|-.+..
T Consensus       468 Rll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  468 RLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTES  519 (604)
T ss_pred             HHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHH
Confidence            8888888873  46777888999999999998776 55566666666655544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.36  E-value=2.3e-11  Score=98.46  Aligned_cols=117  Identities=21%  Similarity=0.302  Sum_probs=106.0

Q ss_pred             HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 015728          269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMI  347 (401)
Q Consensus       269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l  347 (401)
                      .+++.|+++.|+++|.   +++..++..++.+|.+++.. ++.+..+. +.|+++.+++ +++++++..+..++.+|.+|
T Consensus         2 ~~~~~~~i~~l~~~l~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~i~~l~~-~l~~~~~~v~~~a~~~L~~l   76 (120)
T cd00020           2 AVIQAGGLPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVV-EAGGLPALVQ-LLKSEDEEVVKAALWALRNL   76 (120)
T ss_pred             hHHHcCChHHHHHHHH---cCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHH-HHhCCCHHHHHHHHHHHHHH
Confidence            4678999999999999   67789999999999999987 77888886 6799999999 57778889999999999999


Q ss_pred             hcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          348 CCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       348 ~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      +.+.+..+..+.+.|+++.|+.+++.+ +..+++.|.++|..|.
T Consensus        77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~  119 (120)
T cd00020          77 AAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA  119 (120)
T ss_pred             ccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence            998877888889999999999999887 8999999999999875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.34  E-value=6.3e-13  Score=86.06  Aligned_cols=39  Identities=44%  Similarity=0.902  Sum_probs=31.2

Q ss_pred             ccccccccCCceEcCccccccHHhHHHHHHcCC---CCCCCC
Q 015728           15 CPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGN---LTCPVT   53 (401)
Q Consensus        15 C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~---~~CP~c   53 (401)
                      ||||+++|++||+++|||+||..||.+|+....   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998632   579987

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.32  E-value=1.4e-09  Score=109.95  Aligned_cols=278  Identities=17%  Similarity=0.179  Sum_probs=201.5

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +....+...|..  .++..|.-+++.|+++..+++...+.+.+.+.++.++.+|.+++.        .+.+.|+. +|..
T Consensus        77 ~~~~~L~~gL~h--~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--------~Va~~A~~-~L~~  145 (503)
T PF10508_consen   77 QYQPFLQRGLTH--PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--------SVAKAAIK-ALKK  145 (503)
T ss_pred             HHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--------HHHHHHHH-HHHH
Confidence            444445555553  467899999999999999888777788889999999999988874        48999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC-chhHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN-SEASD  251 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~  251 (401)
                      ++.+......++ ..+.+..|..++..++..+|.++..++.++ +..+  ++....+..+ |+++.++..|+++ .=++.
T Consensus       146 l~~~~~~~~~l~-~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i-~~~S--~~~~~~~~~s-gll~~ll~eL~~dDiLvql  220 (503)
T PF10508_consen  146 LASHPEGLEQLF-DSNLLSKLKSLMSQSSDIVRCRVYELLVEI-ASHS--PEAAEAVVNS-GLLDLLLKELDSDDILVQL  220 (503)
T ss_pred             HhCCchhHHHHh-CcchHHHHHHHHhccCHHHHHHHHHHHHHH-HhcC--HHHHHHHHhc-cHHHHHHHHhcCccHHHHH
Confidence            987666554444 777799999999888888899999999999 6554  2667777665 9999999999654 44899


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccc---h-HHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHH
Q 015728          252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRER---S-LAAIAMARIEQLLAIENSKDALINNPNGVYALVKM  327 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~---~-~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~  327 (401)
                      +++..|..|+..+.+...+.+.|+++.|..++.+. ..++   . ..-..+....+++..... ......+..+..|.+ 
T Consensus       221 nalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~-~~dp~~~~~~l~g~~~f~g~la~~~~~-~v~~~~p~~~~~l~~-  297 (503)
T PF10508_consen  221 NALELLSELAETPHGLQYLEQQGIFDKLSNLLQDS-EEDPRLSSLLLPGRMKFFGNLARVSPQ-EVLELYPAFLERLFS-  297 (503)
T ss_pred             HHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcc-ccCCcccchhhhhHHHHHHHHHhcChH-HHHHHHHHHHHHHHH-
Confidence            99999999999999999999999999999999752 1222   1 112233455556653111 111123344455555 


Q ss_pred             HHhcCChhHHHHHHHHHHHHhcCCHHHHHHH-HH-cCcHHHHHHHh----hcCCCHHHHHHHHHHHHHHH
Q 015728          328 VFRVSDHEGSENAINSLMMICCDSLQAREEA-IC-AGVLTQLLLLL----QSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       328 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~-~g~v~~L~~ll----~~~~~~~~~~~A~~~L~~l~  391 (401)
                      +..+.++..+..|+.+|..|++.. +.+..+ .. .+.+...+.-.    ..+ ....|-++...|..+-
T Consensus       298 ~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~-~~~lk~r~l~al~~il  365 (503)
T PF10508_consen  298 MLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSG-STELKLRALHALASIL  365 (503)
T ss_pred             HhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH
Confidence            456678788999999999999764 555455 33 33545444433    334 5677888888877773

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.30  E-value=1e-09  Score=111.05  Aligned_cols=276  Identities=15%  Similarity=0.113  Sum_probs=203.2

Q ss_pred             HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc
Q 015728           98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE  177 (401)
Q Consensus        98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~  177 (401)
                      +-.+|...  +.+.-..+...|..+..... ....  ..+..+.|...|.++++        .++..++. .+.++..++
T Consensus        43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~-~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l~-~l~~~~~~~  108 (503)
T PF10508_consen   43 LFDCLNTS--NREQVELICDILKRLLSALS-PDSL--LPQYQPFLQRGLTHPSP--------KVRRLALK-QLGRIARHS  108 (503)
T ss_pred             HHHHHhhc--ChHHHHHHHHHHHHHHhccC-HHHH--HHHHHHHHHHHhcCCCH--------HHHHHHHH-HHHHHhcCC
Confidence            33445433  45556667777888877553 2222  45678999999988774        59999999 788777677


Q ss_pred             hhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-CchhHHHHHHH
Q 015728          178 TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSEASDAGVRA  256 (401)
Q Consensus       178 ~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~a~~a  256 (401)
                      +.....+.+.+.++.++.+|.+++.++...|+.+|.+| +...   .....+... +.+..|..++.. +...+..+..+
T Consensus       109 ~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l-~~~~---~~~~~l~~~-~~~~~L~~l~~~~~~~vR~Rv~el  183 (503)
T PF10508_consen  109 EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKL-ASHP---EGLEQLFDS-NLLSKLKSLMSQSSDIVRCRVYEL  183 (503)
T ss_pred             HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHH-hCCc---hhHHHHhCc-chHHHHHHHHhccCHHHHHHHHHH
Confidence            66677777899999999999999999999999999999 7655   444556554 558999999954 66788899999


Q ss_pred             HHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-Ch
Q 015728          257 FSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DH  334 (401)
Q Consensus       257 L~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~  334 (401)
                      +.+++. .++....+++.|.++.++..|.   ++|.-++.+++.+|..|+..+++...+. +.|+++.|+.++.+.. ++
T Consensus       184 ~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalell~~La~~~~g~~yL~-~~gi~~~L~~~l~~~~~dp  259 (503)
T PF10508_consen  184 LVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALELLSELAETPHGLQYLE-QQGIFDKLSNLLQDSEEDP  259 (503)
T ss_pred             HHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHHHHHHHcChhHHHHHH-hCCHHHHHHHHHhccccCC
Confidence            999985 5556777778999999999999   6788899999999999999999988886 8899999999654432 22


Q ss_pred             ---h-HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728          335 ---E-GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK  399 (401)
Q Consensus       335 ---~-~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~  399 (401)
                         . .--..+....+++..++..... .-...+..|..+++++ +...+..|...+..++. +.|..+
T Consensus       260 ~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igs-t~~G~~  325 (503)
T PF10508_consen  260 RLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQ-DPTIREVAFDTLGQIGS-TVEGKQ  325 (503)
T ss_pred             cccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhC-CHHHHH
Confidence               0 1122335556666643322111 1123344555666666 88899999999999986 776643

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.25  E-value=8.6e-11  Score=95.02  Aligned_cols=113  Identities=19%  Similarity=0.307  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhh
Q 015728          233 DRLLREIISLV-HHNSEASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENS  310 (401)
Q Consensus       233 ~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~  310 (401)
                      .|+++.|+.+| +++...+..++++|.+++.. ++++..+++.|++|.++++|.   +++..++..++++|.+|+.+...
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---SEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---CCCHHHHHHHHHHHHHHccCcHH
Confidence            37899999999 45677999999999999976 788999999999999999999   67889999999999999988755


Q ss_pred             HHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728          311 KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC  349 (401)
Q Consensus       311 ~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~  349 (401)
                      ......+.|+++.|++ ++...+...++.+..+|.+|+.
T Consensus        83 ~~~~~~~~g~l~~l~~-~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVN-LLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHH-HHhcCCHHHHHHHHHHHHHhhC
Confidence            4444458899999999 5667777999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.23  E-value=9.6e-12  Score=119.07  Aligned_cols=71  Identities=18%  Similarity=0.403  Sum_probs=63.8

Q ss_pred             CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728            8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      .+...+.|+||.++|.+|++++|||+||..|+..|+.. ...||.|+..+....+..|..+.++|+.|+..+
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence            35678999999999999999999999999999999984 457999999988778899999999999998654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.18  E-value=2e-09  Score=102.50  Aligned_cols=254  Identities=15%  Similarity=0.167  Sum_probs=166.1

Q ss_pred             HHHHHHHHhcCchhhhHHHhc---CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc------
Q 015728          116 VQKIHVVLRESPPASNCLIQL---GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE------  186 (401)
Q Consensus       116 ~~~L~~l~~~~~~~r~~i~~~---G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~------  186 (401)
                      +..++.+-+..+..|..+.+.   +.+..++.+|+.-..      +.++..+++. ++..|..++....+.+..      
T Consensus        31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~------~~d~v~yvL~-li~dll~~~~~~~~~~~~~~~~~~  103 (312)
T PF03224_consen   31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSS------NDDTVQYVLT-LIDDLLSDDPSRVELFLELAKQDD  103 (312)
T ss_dssp             HHHHHHHHHHHH-------------------HHHHHH---------HHHHHHHHH-HHHHHHH-SSSSHHHHHHHHH-TT
T ss_pred             HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccC------cHHHHHHHHH-HHHHHHhcCHHHHHHHHHhccccc
Confidence            344444444444445445552   457788888866511      2668899999 888777666555444422      


Q ss_pred             CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-----CchhHHHHHHHHHHhc
Q 015728          187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-----NSEASDAGVRAFSALC  261 (401)
Q Consensus       187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~a~~aL~~Ls  261 (401)
                      .....+++.++.+++..++..|+..|..|.+..+   .......  .+.++.++..|+.     +.+.+..++.+|.+|.
T Consensus       104 ~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~---~~~~~~~--~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL  178 (312)
T PF03224_consen  104 SDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP---KRSEKLV--KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL  178 (312)
T ss_dssp             H--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT---T--HHHH--HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred             chhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC---ccccchH--HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence            2258889999999999999999999999944443   1111111  3678888888832     2347799999999999


Q ss_pred             CCCchhHHHHhcCcHHHHHHHH------HhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChh
Q 015728          262 STETNRKTLVQEGAINGLIAYI------SNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHE  335 (401)
Q Consensus       262 ~~~~n~~~iv~~G~v~~Lv~lL------~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~  335 (401)
                      ..++.|..+.+.|+|+.|+.+|      .+  ..+.+++=.++-+++.|+-.++....+. +.+.|+.|++.+.....++
T Consensus       179 ~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~--~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~-~~~~i~~L~~i~~~~~KEK  255 (312)
T PF03224_consen  179 RSKEYRQVFWKSNGVSPLFDILRKQATNSN--SSGIQLQYQALLCLWLLSFEPEIAEELN-KKYLIPLLADILKDSIKEK  255 (312)
T ss_dssp             TSHHHHHHHHTHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHH--SHH
T ss_pred             CcchhHHHHHhcCcHHHHHHHHHhhcccCC--CCchhHHHHHHHHHHHHhcCHHHHHHHh-ccchHHHHHHHHHhcccch
Confidence            9999999999999999999999      32  4556788889999999999999999997 6679999999655556788


Q ss_pred             HHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHhhcC-CCHHHHHHHH
Q 015728          336 GSENAINSLMMICCDSLQ-AREEAICAGVLTQLLLLLQSQ-CSNRTKTKAR  384 (401)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~ll~~~-~~~~~~~~A~  384 (401)
                      +.+.++++|.|+...+.. ....|+..|+++.+-.|.... .++...+.-.
T Consensus       256 vvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~  306 (312)
T PF03224_consen  256 VVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE  306 (312)
T ss_dssp             HHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence            999999999999987653 777899988888877665433 2445544433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.18  E-value=1.4e-11  Score=105.25  Aligned_cols=57  Identities=32%  Similarity=0.550  Sum_probs=48.9

Q ss_pred             CCCcccccccccccCCceEcCccccccHHhHHHHHHc---------------CCCCCCCCcccCCCCCCCCc
Q 015728            9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA---------------GNLTCPVTMQTLHDPSIVPN   65 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~---------------~~~~CP~c~~~~~~~~~~~n   65 (401)
                      ..+++.|+||.+.+++|+.++|||.||+.||.+|+..               +...||.|+..+....+.+.
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi   86 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI   86 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence            4578999999999999999999999999999999752               24679999999987666554

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=99.18  E-value=7.4e-12  Score=113.43  Aligned_cols=69  Identities=22%  Similarity=0.395  Sum_probs=62.5

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      .+.++|.||+++|+-|+.+||+|+||..||..++. ....||.|...+....++.|+.+..+|+.|.-.+
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R   89 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR   89 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhc-cCCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999998 5677999999999989999999999999986543

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=3.1e-10  Score=108.17  Aligned_cols=196  Identities=12%  Similarity=0.126  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH
Q 015728          161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII  240 (401)
Q Consensus       161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv  240 (401)
                      +...|+. +|.||+.+- ..-.-+.....+..||..|+..+.+........|..| |..+   +||..++.. |+++.|+
T Consensus       279 LLrva~y-lLlNlAed~-~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKL-SIf~---eNK~~M~~~-~iveKL~  351 (791)
T KOG1222|consen  279 LLRVAVY-LLLNLAEDI-SVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKL-SIFD---ENKIVMEQN-GIVEKLL  351 (791)
T ss_pred             HHHHHHH-HHHHHhhhh-hHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHh-hhhc---cchHHHHhc-cHHHHHH
Confidence            3344556 777777432 2222244567889999999999999999999999999 9988   899999885 9999999


Q ss_pred             HHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC
Q 015728          241 SLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN  319 (401)
Q Consensus       241 ~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g  319 (401)
                      +++ ..+++.++..+..|+||+.+..+|.+||..|.+|.|+.+|.+   ..  -...|+..|..++-++..+..+. ...
T Consensus       352 klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~---d~--~~~iA~~~lYh~S~dD~~K~Mfa-yTd  425 (791)
T KOG1222|consen  352 KLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS---DT--KHGIALNMLYHLSCDDDAKAMFA-YTD  425 (791)
T ss_pred             HhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC---cc--cchhhhhhhhhhccCcHHHHHHH-HHH
Confidence            999 467789999999999999999999999999999999999983   22  34569999999999999988885 889


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728          320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL  370 (401)
Q Consensus       320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l  370 (401)
                      +|+.+.+.++...+.++...-+..-.|||.+.++ .+.+.+..++..|+..
T Consensus       426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN-aQlvceGqgL~~LM~r  475 (791)
T KOG1222|consen  426 CIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN-AQLVCEGQGLDLLMER  475 (791)
T ss_pred             HHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc-ceEEecCcchHHHHHH
Confidence            9999999888777767776666666888877543 3456666666655543

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=99.11  E-value=2e-11  Score=84.11  Aligned_cols=60  Identities=28%  Similarity=0.510  Sum_probs=34.5

Q ss_pred             CCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHH
Q 015728           10 PHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLI   72 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i   72 (401)
                      ++.++|++|.++|++||.+ .|.|.||+.|+.+.+.   ..||+|..+...++++.|+.+..+|
T Consensus         5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred             HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence            4568999999999999975 7999999999977554   2499999999999999999998876

>PRK09687 putative lyase; Provisional

Probab=99.05  E-value=1.8e-08  Score=94.02  Aligned_cols=223  Identities=12%  Similarity=0.021  Sum_probs=155.7

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHh-ccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQL-FGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL-~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ....+..++.  +.++..|..|+..|..+-.....      ..-.++.|..++ ++++        +.++..|+. +|..
T Consensus        55 ~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d--------~~VR~~A~~-aLG~  117 (280)
T PRK09687         55 VFRLAIELCS--SKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKS--------ACVRASAIN-ATGH  117 (280)
T ss_pred             HHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCC--------HHHHHHHHH-HHhc
Confidence            4444444443  23567778888877776532211      122467787774 4444        458888998 8887


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASD  251 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~  251 (401)
                      +.......     ....+..+...+.+.+..+|..++.+|..+ ..              ..+++.|+.+| +.++.++.
T Consensus       118 ~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-~~--------------~~ai~~L~~~L~d~~~~VR~  177 (280)
T PRK09687        118 RCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVI-ND--------------EAAIPLLINLLKDPNGDVRN  177 (280)
T ss_pred             cccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc-CC--------------HHHHHHHHHHhcCCCHHHHH
Confidence            65322111     223466677777788889999999998777 31              24689999999 45667999


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728          252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV  331 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~  331 (401)
                      .|+.+|..+...        ...+++.|+.+|.   +.+..++..|+.+|..+           .+..+|+.|++ .+++
T Consensus       178 ~A~~aLg~~~~~--------~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~-----------~~~~av~~Li~-~L~~  234 (280)
T PRK09687        178 WAAFALNSNKYD--------NPDIREAFVAMLQ---DKNEEIRIEAIIGLALR-----------KDKRVLSVLIK-ELKK  234 (280)
T ss_pred             HHHHHHhcCCCC--------CHHHHHHHHHHhc---CCChHHHHHHHHHHHcc-----------CChhHHHHHHH-HHcC
Confidence            999999988321        1257888999998   78889999999988765           35678999999 4665


Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728          332 SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL  389 (401)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~  389 (401)
                      ++  ....++.+|..+-.  +         -+++.|..+++...++.++.+|.+.|+.
T Consensus       235 ~~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        235 GT--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             Cc--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            54  55667777777632  2         3678999999755599999999988864

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.00  E-value=2.5e-10  Score=72.98  Aligned_cols=38  Identities=45%  Similarity=0.859  Sum_probs=32.9

Q ss_pred             ccccccccCCce-EcCccccccHHhHHHHHHcCCCCCCCC
Q 015728           15 CPISLDLFTDPV-TLCTGQTYDRSSIEKWLAAGNLTCPVT   53 (401)
Q Consensus        15 C~iC~~~~~~Pv-~~~Cgh~fc~~Ci~~~~~~~~~~CP~c   53 (401)
                      |+||.+.+.+|+ .++|||+||..|+.+|+.. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            899999999995 6899999999999999996 6789987

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.9e-10  Score=100.07  Aligned_cols=55  Identities=31%  Similarity=0.616  Sum_probs=48.5

Q ss_pred             CcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCCcccCCCCCCCCc
Q 015728           11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDPSIVPN   65 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~~~~~~n   65 (401)
                      ..|.|.||++.-+|||.+.|||-||+.||++|+..  ....||+|+..++...+.|-
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl  102 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL  102 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence            47999999999999999999999999999999985  35679999998887766654

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.99  E-value=1.6e-07  Score=88.91  Aligned_cols=287  Identities=12%  Similarity=0.107  Sum_probs=199.7

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +.+..|.++.++.  +.+.-.+.-+.|.+.|..+.++|..+.+.||-..++..|+.-... .+.-+.+....+.+ +|.|
T Consensus        87 ~~le~Lrq~psS~--d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~-d~~ane~~~~v~~g-~l~N  162 (604)
T KOG4500|consen   87 EALELLRQTPSSP--DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSK-DNPANEEYSAVAFG-VLHN  162 (604)
T ss_pred             HHHHHHHhCCCCC--cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhcccccc-CCccHHHHHHHHHH-HHHH
Confidence            3444455544433  456777788889999999999999999999988888888653321 00113445555666 8888


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCch
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNSE  248 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~  248 (401)
                      -..+.++.+.-+.+.|.++.|.-.+.=  .+.+.-+......+++.+...  +...+...+ ..+...|+++|.  -.+.
T Consensus       163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~--e~~~~~~~d-~sl~~~l~~ll~~~v~~d  239 (604)
T KOG4500|consen  163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC--EMLYPFCKD-CSLVFMLLQLLPSMVRED  239 (604)
T ss_pred             hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH--Hhhhhhhcc-chHHHHHHHHHHHhhccc
Confidence            888887777677799999988877643  345555555555555533332  122333333 367788888883  3455


Q ss_pred             hHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcccc-------chHHHHHHHHHHHHhCCHhhHHHHHhCCCcH
Q 015728          249 ASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRE-------RSLAAIAMARIEQLLAIENSKDALINNPNGV  321 (401)
Q Consensus       249 ~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~-------~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i  321 (401)
                      ..+-....|...+.++..+-.+++.|.+..++.++++  -.+       ...-..++.....|..+++....+..++...
T Consensus       240 ~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~--~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l  317 (604)
T KOG4500|consen  240 IDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRN--MKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFL  317 (604)
T ss_pred             hhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHh--cccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHH
Confidence            7777888999999999999999999999999999974  122       1233445555555666777777776555577


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhc----CCCHHHHHHHHHHHHHH
Q 015728          322 YALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQS----QCSNRTKTKARMLLKLL  390 (401)
Q Consensus       322 ~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~----~~~~~~~~~A~~~L~~l  390 (401)
                      ..++.+ +++.+....-.++-++.|++..+..+. .+++.|.+..|+.++-.    +++-+.+..+..+||.|
T Consensus       318 ~~~~sw-~~S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl  388 (604)
T KOG4500|consen  318 DFLESW-FRSDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNL  388 (604)
T ss_pred             HHHHHH-hcCCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhc
Confidence            778884 677676788888999999999977665 89999999999997733    22335566667777765

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.6e-07  Score=89.95  Aligned_cols=281  Identities=12%  Similarity=0.105  Sum_probs=182.8

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      .++.|++.|...++  +.--....-|..|+-.. +|+..+.+.|.|..|+++....+        ++++...+. ++.|+
T Consensus       305 iV~mLVKaLdr~n~--~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h--------~dL~~~tl~-LlfNl  372 (791)
T KOG1222|consen  305 IVAMLVKALDRSNS--SLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQH--------PDLRKATLM-LLFNL  372 (791)
T ss_pred             HHHHHHHHHcccch--HHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCC--------HHHHHHHHH-Hhhhc
Confidence            34555566644432  33344455555665554 59999999999999999998776        558888888 99999


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cC-CchhHH
Q 015728          174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HH-NSEASD  251 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~-~~~~~~  251 (401)
                      +.+.... .-++..|.+|.+..+|.+.+.  ...|...|..+ |.++   ..|..+... ..|+.+.+.+ .+ +.++-.
T Consensus       373 SFD~glr-~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~-S~dD---~~K~MfayT-dci~~lmk~v~~~~~~~vdl  444 (791)
T KOG1222|consen  373 SFDSGLR-PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHL-SCDD---DAKAMFAYT-DCIKLLMKDVLSGTGSEVDL  444 (791)
T ss_pred             ccccccc-HHHhhccchHHHHHHhCCccc--chhhhhhhhhh-ccCc---HHHHHHHHH-HHHHHHHHHHHhcCCceecH
Confidence            9876544 445588999999999976543  34577789999 8887   778887664 7889998876 43 333444


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcCcHHHHH-------------------------------------HHHHhhccccchHH
Q 015728          252 AGVRAFSALCSTETNRKTLVQEGAINGLI-------------------------------------AYISNALTRERSLA  294 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv-------------------------------------~lL~~~~~~~~~~~  294 (401)
                      .....-.|||.+..|...+.+..++..|+                                     ..+.+  +.++...
T Consensus       445 ~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~n--d~~E~F~  522 (791)
T KOG1222|consen  445 ALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKN--DNSESFG  522 (791)
T ss_pred             HHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhc--CchHHHH
Confidence            43434456776666655555543443333                                     22222  2334445


Q ss_pred             HHHHHHHHHHhCCH-------------------------------------------hhHHHHHhCCCcHHHHHHHHHhc
Q 015728          295 AIAMARIEQLLAIE-------------------------------------------NSKDALINNPNGVYALVKMVFRV  331 (401)
Q Consensus       295 ~~a~~~L~~La~~~-------------------------------------------~~~~~~~~~~g~i~~Lv~~l~~~  331 (401)
                      -.++++|++|...+                                           +..+.+...+|.|+.|+++ ++.
T Consensus       523 ~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieL-L~a  601 (791)
T KOG1222|consen  523 LECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIEL-LQA  601 (791)
T ss_pred             HHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHH-HHh
Confidence            56777777776511                                           1222333455778888884 443


Q ss_pred             C--ChhHHHHHHHHHHHHhcCCHHHHHHHHHcC-cHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728          332 S--DHEGSENAINSLMMICCDSLQAREEAICAG-VLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK  399 (401)
Q Consensus       332 ~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~  399 (401)
                      .  +.+..-.-+.+...+-.+ +..|..|+++- .-..|+.||.+. ..+.|+-.-..|..+++|..|=.|
T Consensus       602 ~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDk-N~eiRkVCDn~LdIiae~d~EWAK  670 (791)
T KOG1222|consen  602 CQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDK-NAEIRKVCDNALDIIAEHDKEWAK  670 (791)
T ss_pred             hcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhHHHHH
Confidence            2  224444455566666666 44555666544 446699999887 889999999999999885555433

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.96  E-value=3.2e-10  Score=100.82  Aligned_cols=67  Identities=18%  Similarity=0.280  Sum_probs=58.6

Q ss_pred             CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHh
Q 015728           11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQM   78 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~   78 (401)
                      .-++|-||..+|+-|+.++|||+||..||.+++. .+..||+|+......-++.+..++.+++.|...
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~   90 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCESRLRGSSGSREINESHARN   90 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhc-CCCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence            3579999999999999999999999999999998 566799999988776778888888888887653

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.93  E-value=5.1e-08  Score=92.89  Aligned_cols=216  Identities=11%  Similarity=0.101  Sum_probs=152.4

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh------cCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ------LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC  168 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~------~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~  168 (401)
                      ...+..+|+..++..+.....+..+..+...++...+.+.+      .....++++++.+++..        ++..|+. 
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~--------i~~~a~~-  127 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSF--------IQLKAAF-  127 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHH--------HHHHHHH-
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHH--------HHHHHHH-
Confidence            44555666655566888999999999999999977777766      12678888888877644        8899999 


Q ss_pred             HHHhhcCCchhhhhhcccCCchHHHHHHhhc----CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-
Q 015728          169 VQKLLLVGETESLNLLNEESKMESFIVLFEH----GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-  243 (401)
Q Consensus       169 ~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~----~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-  243 (401)
                      +|..+....+...... ..+.++.++..|.+    .+.+.+..++..|.+| ....   ++|..+.+. |+++.|+.+| 
T Consensus       128 iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L-L~~~---~~R~~f~~~-~~v~~l~~iL~  201 (312)
T PF03224_consen  128 ILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL-LRSK---EYRQVFWKS-NGVSPLFDILR  201 (312)
T ss_dssp             HHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH-HTSH---HHHHHHHTH-HHHHHHHHHHH
T ss_pred             HHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH-hCcc---hhHHHHHhc-CcHHHHHHHHH
Confidence            8887775554433222 13567888888865    3445678889999999 6555   999999985 7789999999 


Q ss_pred             -----cC--CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh--hHHHH
Q 015728          244 -----HH--NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN--SKDAL  314 (401)
Q Consensus       244 -----~~--~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~--~~~~~  314 (401)
                           ++  +.+.+-+++-++|-|+.+++....+.+.+.||.|+++++.  ...+.+...++++|.||...+.  ....+
T Consensus       202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvvRv~la~l~Nl~~~~~~~~~~~m  279 (312)
T PF03224_consen  202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVVRVSLAILRNLLSKAPKSNIELM  279 (312)
T ss_dssp             ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHHHHHHHHHHHHHhccHHHHHHHH
Confidence                 22  2469999999999999999999999999999999999996  5667899999999999998765  56666


Q ss_pred             HhCCCcHHHHHHHHH
Q 015728          315 INNPNGVYALVKMVF  329 (401)
Q Consensus       315 ~~~~g~i~~Lv~~l~  329 (401)
                      + . +.++++++.|.
T Consensus       280 v-~-~~~l~~l~~L~  292 (312)
T PF03224_consen  280 V-L-CGLLKTLQNLS  292 (312)
T ss_dssp             H-H-H-HHHHHHHHH
T ss_pred             H-H-ccHHHHHHHHh
Confidence            5 4 34555555343

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=4.6e-07  Score=91.45  Aligned_cols=270  Identities=14%  Similarity=0.173  Sum_probs=193.9

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      |-+..|..-+.++ .-.+.|+.|+..|..+++.   +|..+... |+++|+..|..+-.      |+++...++. ++.+
T Consensus        22 ETI~kLcDRvess-TL~eDRR~A~rgLKa~srk---YR~~Vga~-Gmk~li~vL~~D~~------D~E~ik~~Ld-Tl~i   89 (970)
T KOG0946|consen   22 ETIEKLCDRVESS-TLLEDRRDAVRGLKAFSRK---YREEVGAQ-GMKPLIQVLQRDYM------DPEIIKYALD-TLLI   89 (970)
T ss_pred             hHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHH---HHHHHHHc-ccHHHHHHHhhccC------CHHHHHHHHH-HHHH
Confidence            4455554434433 4478999999999999975   77777555 58899999976544      3789999999 5555


Q ss_pred             hcCCch------hhh-----------hhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHH
Q 015728          173 LLVGET------ESL-----------NLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL  235 (401)
Q Consensus       173 l~~~~~------~~~-----------~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~  235 (401)
                      +..+++      +.+           ..+...+-|..|+..+..-+-.+|..+...|..+.+....  +.+..+....-+
T Consensus        90 l~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~--e~q~~ll~~P~g  167 (970)
T KOG0946|consen   90 LTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT--ELQDALLVSPMG  167 (970)
T ss_pred             HHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH--HHHHHHHHCchh
Confidence            554442      211           1344677899999999988999999999999998666553  888888777778


Q ss_pred             HHHHHHHccCCch-hHHHHHHHHHHhcCCCchhHHHHh-cCcHHHHHHHHHhhccc-cchHHHHHHHHHHHHhCCHhhHH
Q 015728          236 LREIISLVHHNSE-ASDAGVRAFSALCSTETNRKTLVQ-EGAINGLIAYISNALTR-ERSLAAIAMARIEQLLAIENSKD  312 (401)
Q Consensus       236 i~~Lv~lL~~~~~-~~~~a~~aL~~Ls~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~-~~~~~~~a~~~L~~La~~~~~~~  312 (401)
                      |..|+.+|+++.+ ++-.+...|..|..+..+..++|. ..++..|..++.+.++. ..-+.+.++..|-+|-+.+....
T Consensus       168 IS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ  247 (970)
T KOG0946|consen  168 ISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQ  247 (970)
T ss_pred             HHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchh
Confidence            9999999976655 888888889999988777777765 78999999999864322 34688999999999998776555


Q ss_pred             HHHhCCCcHHHHHHHHHhc---CCh--------hH--HHHHHHHHHHHhcCC------HHHHHHHHHcCcHHHHHHHhhc
Q 015728          313 ALINNPNGVYALVKMVFRV---SDH--------EG--SENAINSLMMICCDS------LQAREEAICAGVLTQLLLLLQS  373 (401)
Q Consensus       313 ~~~~~~g~i~~Lv~~l~~~---~~~--------~~--~~~a~~~L~~l~~~~------~~~~~~~~~~g~v~~L~~ll~~  373 (401)
                      .+.++.+.||.|.++ +..   ++.        ++  ...++.++..+..-+      ..+++.+...+++..|..++-+
T Consensus       248 ~~FrE~~~i~rL~kl-L~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~  326 (970)
T KOG0946|consen  248 NFFREGSYIPRLLKL-LSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMH  326 (970)
T ss_pred             hHHhccccHHHHHhh-cCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcC
Confidence            555799999999984 432   221        11  112344444443221      1355688899999999997765


Q ss_pred             CCCH
Q 015728          374 QCSN  377 (401)
Q Consensus       374 ~~~~  377 (401)
                      ++-+
T Consensus       327 ~~vp  330 (970)
T KOG0946|consen  327 PGVP  330 (970)
T ss_pred             CCCc
Confidence            5344

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.89  E-value=1.4e-09  Score=70.51  Aligned_cols=39  Identities=44%  Similarity=1.036  Sum_probs=35.9

Q ss_pred             ccccccccCCce-EcCccccccHHhHHHHHH-cCCCCCCCC
Q 015728           15 CPISLDLFTDPV-TLCTGQTYDRSSIEKWLA-AGNLTCPVT   53 (401)
Q Consensus        15 C~iC~~~~~~Pv-~~~Cgh~fc~~Ci~~~~~-~~~~~CP~c   53 (401)
                      |+||.+.+.+|+ .++|||+||..|+.+|+. .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 789999999999999999 566789987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.88  E-value=7.4e-07  Score=86.96  Aligned_cols=276  Identities=11%  Similarity=0.089  Sum_probs=189.5

Q ss_pred             hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhc-----CChHHHHHHhccCCcccchhhhHHHHHHHH
Q 015728           92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQL-----GFLPLLLKQLFGKAESKFSQVYVQFVEESL  166 (401)
Q Consensus        92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~-----G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~  166 (401)
                      +.-+.++..+++.. +..+..+..+.-+..+...++..-+.+.+.     +...+++.+|...+..        ++..+.
T Consensus        52 ~~y~~~~l~ll~~~-~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~--------i~~~a~  122 (429)
T cd00256          52 GQYVKTFVNLLSQI-DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQF--------IVHMSF  122 (429)
T ss_pred             HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchh--------HHHHHH
Confidence            35677777877654 557788888999999999988766666654     4667788888766544        888888


Q ss_pred             HHHHHhhcCCchhhhhhcccCCchH----HHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH
Q 015728          167 SCVQKLLLVGETESLNLLNEESKME----SFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS  241 (401)
Q Consensus       167 ~~~L~~l~~~~~~~~~~v~~~g~i~----~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~  241 (401)
                      . +|..+.......   . ....++    -+...|+++ +...+.-++..|..| -..+   ++|..+.... ++++|+.
T Consensus       123 ~-iLt~l~~~~~~~---~-~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~L-L~~~---~~R~~f~~~~-~v~~L~~  192 (429)
T cd00256         123 S-ILAKLACFGLAK---M-EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQML-LRVD---EYRFAFVLAD-GVPTLVK  192 (429)
T ss_pred             H-HHHHHHhcCccc---c-chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHH-hCCc---hHHHHHHHcc-CHHHHHH
Confidence            8 787776433221   1 111233    334455554 456777888888887 5444   8898888764 6899999


Q ss_pred             HccC---CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-------hhH
Q 015728          242 LVHH---NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-------NSK  311 (401)
Q Consensus       242 lL~~---~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-------~~~  311 (401)
                      +|+.   +.+.+-.++-++|-|+.+++....+.+.|.|+.|+++++.  ...+.+...++++|.||...+       ...
T Consensus       193 ~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~--s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~  270 (429)
T cd00256         193 LLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKE--STKEKVIRIVLAIFRNLISKRVDREVKKTAA  270 (429)
T ss_pred             HHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence            9954   4479999999999999998877777789999999999996  566789999999999999743       122


Q ss_pred             HHHHhCCCcHHHHHHHHHh----------------------------------------------cCChh-HHHH-----
Q 015728          312 DALINNPNGVYALVKMVFR----------------------------------------------VSDHE-GSEN-----  339 (401)
Q Consensus       312 ~~~~~~~g~i~~Lv~~l~~----------------------------------------------~~~~~-~~~~-----  339 (401)
                      ..++ +.|. +.+++.|..                                              +.++. =+|+     
T Consensus       271 ~~mv-~~~l-~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~  348 (429)
T cd00256         271 LQMV-QCKV-LKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLN  348 (429)
T ss_pred             HHHH-HcCh-HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHH
Confidence            3343 4443 333332311                                              00000 0111     


Q ss_pred             -----HHHHHHHH--------------------hcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          340 -----AINSLMMI--------------------CCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       340 -----a~~~L~~l--------------------~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                           .++.|..|                    +.+.++.|..+-+-|+=..++.||.++ ++.+|..|...+..+-
T Consensus       349 ~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm  424 (429)
T cd00256         349 EKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLAVQKLM  424 (429)
T ss_pred             hcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence                 22333333                    333345666666889989999999888 9999999999888763

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=1.9e-09  Score=96.63  Aligned_cols=53  Identities=17%  Similarity=0.427  Sum_probs=46.0

Q ss_pred             CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCC
Q 015728            9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI   62 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~   62 (401)
                      .+..++|.+|++-..+|-.+||||.||+.||..|..+ ...||.||..+.+.++
T Consensus       236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence            4456999999999999999999999999999999985 4459999998877543

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.83  E-value=1.7e-09  Score=69.86  Aligned_cols=36  Identities=28%  Similarity=0.749  Sum_probs=23.2

Q ss_pred             ccccccccCC----ceEcCccccccHHhHHHHHHcC---CCCCC
Q 015728           15 CPISLDLFTD----PVTLCTGQTYDRSSIEKWLAAG---NLTCP   51 (401)
Q Consensus        15 C~iC~~~~~~----Pv~~~Cgh~fc~~Ci~~~~~~~---~~~CP   51 (401)
                      ||||.+ |.+    |+.++|||+||+.|+++++..+   .+.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 888    9999999999999999999853   46676

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.3e-09  Score=89.19  Aligned_cols=53  Identities=23%  Similarity=0.505  Sum_probs=43.5

Q ss_pred             CCcccccccccccCC--ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC
Q 015728           10 PHLFRCPISLDLFTD--PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV   63 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~--Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~   63 (401)
                      ...+.||||++-+.+  |+.+.|||.||+.||.+.++ ....||.|++.++.+.+.
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITHKQFH  183 (187)
T ss_pred             ccccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccchhhhe
Confidence            346999999998865  55689999999999999998 456799999987766543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.81  E-value=3.9e-09  Score=71.52  Aligned_cols=47  Identities=26%  Similarity=0.430  Sum_probs=40.7

Q ss_pred             CcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           11 HLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      ++..|+||++...+++..+|||. ||..|+.+|+. ....||.|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            36789999999999999999999 99999999998 7788999998764

...

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=6.8e-07  Score=90.89  Aligned_cols=246  Identities=11%  Similarity=0.119  Sum_probs=185.8

Q ss_pred             cChHHHHHHHHHHHHHHhc-CchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          107 ATLETKLQIVQKIHVVLRE-SPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      +++..|.+|+.+|+.+..- ++..-..+--.-+||.||.+|+....       .++...|+. +|.+|+.--+....+++
T Consensus       180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-------~DIMl~AcR-altyl~evlP~S~a~vV  251 (1051)
T KOG0168|consen  180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-------FDIMLLACR-ALTYLCEVLPRSSAIVV  251 (1051)
T ss_pred             CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-------HHHHHHHHH-HHHHHHhhccchhheee
Confidence            4788999999999887744 33333333335589999999987764       689999999 88888754455667888


Q ss_pred             cCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-
Q 015728          186 EESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCS-  262 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-  262 (401)
                      +.++||.|+..|.. ...++-+++..+|..| |..+    .+.. ..+ |+|...+..|+ =+..+++.|+....|.|. 
T Consensus       252 ~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i-SR~H----~~Ai-L~A-G~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  252 DEHAIPVLLEKLLTIEYIDVAEQSLQALEKI-SRRH----PKAI-LQA-GALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             cccchHHHHHhhhhhhhhHHHHHHHHHHHHH-Hhhc----cHHH-Hhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999987754 5778999999999999 8754    3444 455 77788887774 245689999999999994 


Q ss_pred             -CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC----CHhhHHHHHhCCCcHHHHHHHHHhcC----C
Q 015728          263 -TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA----IENSKDALINNPNGVYALVKMVFRVS----D  333 (401)
Q Consensus       263 -~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~----~~~~~~~~~~~~g~i~~Lv~~l~~~~----~  333 (401)
                       .++.-.-++|  ++|.|..+|+   ..+....+..+-.+..++.    .++--.++. ..|.|....++ +...    +
T Consensus       325 i~sd~f~~v~e--alPlL~~lLs---~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qL-lsvt~t~Ls  397 (1051)
T KOG0168|consen  325 IRSDEFHFVME--ALPLLTPLLS---YQDKKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQL-LSVTPTILS  397 (1051)
T ss_pred             CCCccchHHHH--HHHHHHHHHh---hccchhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHH-HhcCccccc
Confidence             4455555566  7999999999   5677888888888888875    344446665 77888888884 4332    2


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728          334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ  374 (401)
Q Consensus       334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~  374 (401)
                      ....-..++.|..+|++.+..+....+.++...|..+|+.-
T Consensus       398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence            23455678888889998888888999999999999988643

>PRK09687 putative lyase; Provisional

Probab=98.80  E-value=3.5e-07  Score=85.41  Aligned_cols=198  Identities=15%  Similarity=0.079  Sum_probs=96.9

Q ss_pred             ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 015728          138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIIS  217 (401)
Q Consensus       138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s  217 (401)
                      .++.|+.+|.+.+.        .++..|+. .|..+-           ....++.+..++++++...|..|+++|..| .
T Consensus        24 ~~~~L~~~L~d~d~--------~vR~~A~~-aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g   82 (280)
T PRK09687         24 NDDELFRLLDDHNS--------LKRISSIR-VLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQL-G   82 (280)
T ss_pred             cHHHHHHHHhCCCH--------HHHHHHHH-HHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhc-C
Confidence            35566666655543        36666666 554332           122345555556666666666666666666 3


Q ss_pred             cccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcCCCchh--------------------HH------
Q 015728          218 SSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCSTETNR--------------------KT------  269 (401)
Q Consensus       218 ~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~~n~--------------------~~------  269 (401)
                      ...   ..      ...+++.|..++ + .+..++..|+.+|.+++....+.                    ..      
T Consensus        83 ~~~---~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg  153 (280)
T PRK09687         83 MAK---RC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALS  153 (280)
T ss_pred             CCc---cc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence            211   00      012455555553 2 33446666666666664322111                    00      


Q ss_pred             -HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          270 -LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       270 -iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                       +-...+++.|+.+|.   +.+..++..|+.+|..+..         ..+.+++.|++ ++.+.+..++..|+.+|..+-
T Consensus       154 ~~~~~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~-~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        154 VINDEAAIPLLINLLK---DPNGDVRNWAAFALNSNKY---------DNPDIREAFVA-MLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             ccCCHHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHH-HhcCCChHHHHHHHHHHHccC
Confidence             001124555555555   3444455555555554411         12234455555 344444455555555554431


Q ss_pred             cCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          349 CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       349 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                        +         .-+++.|+..++++ .  .+..|..+|..+..
T Consensus       221 --~---------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        221 --D---------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD  250 (280)
T ss_pred             --C---------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC
Confidence              1         13567777777665 3  45566666665543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.74  E-value=4.4e-09  Score=69.21  Aligned_cols=40  Identities=43%  Similarity=0.862  Sum_probs=33.5

Q ss_pred             cccccccccC---CceEcCccccccHHhHHHHHHcCCCCCCCCc
Q 015728           14 RCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTM   54 (401)
Q Consensus        14 ~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~   54 (401)
                      .|+||++.|.   .++.++|||.||..|+.+|+.. ...||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            5999999884   4556899999999999999985 56899996

...

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.73  E-value=2.2e-06  Score=92.91  Aligned_cols=220  Identities=15%  Similarity=0.108  Sum_probs=121.3

Q ss_pred             HHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC
Q 015728           97 TLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG  176 (401)
Q Consensus        97 ~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~  176 (401)
                      .|.+.|.  +.++..|+.|+..|....           ..++++.|+.+|++++.        .++..|+. .|..+...
T Consensus       625 ~L~~~L~--D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~--------~VR~~Aa~-aL~~l~~~  682 (897)
T PRK13800        625 ELAPYLA--DPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAA--------AVRRAAAE-GLRELVEV  682 (897)
T ss_pred             HHHHHhc--CCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCH--------HHHHHHHH-HHHHHHhc
Confidence            3434443  456777888877777643           34568889999977664        48888887 66654210


Q ss_pred             chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHH
Q 015728          177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVR  255 (401)
Q Consensus       177 ~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~  255 (401)
                                ....+.|...|+++++.+|..|+.+|..+ ...+               ...|+..| +.+..++..|+.
T Consensus       683 ----------~~~~~~L~~~L~~~d~~VR~~A~~aL~~~-~~~~---------------~~~l~~~L~D~d~~VR~~Av~  736 (897)
T PRK13800        683 ----------LPPAPALRDHLGSPDPVVRAAALDVLRAL-RAGD---------------AALFAAALGDPDHRVRIEAVR  736 (897)
T ss_pred             ----------cCchHHHHHHhcCCCHHHHHHHHHHHHhh-ccCC---------------HHHHHHHhcCCCHHHHHHHHH
Confidence                      11234566677777777777777777665 3111               12344445 334446666666


Q ss_pred             HHHHhcC---------CCc--hhHHHH---------hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728          256 AFSALCS---------TET--NRKTLV---------QEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI  315 (401)
Q Consensus       256 aL~~Ls~---------~~~--n~~~iv---------~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~  315 (401)
                      +|..+..         +++  .|...+         +.+.++.|..++.   +.+..++..|+.+|..+...        
T Consensus       737 aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~--------  805 (897)
T PRK13800        737 ALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCP--------  805 (897)
T ss_pred             HHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCc--------
Confidence            6554310         000  011110         1122455555555   45555666666655544211        


Q ss_pred             hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728          316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL  390 (401)
Q Consensus       316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l  390 (401)
                        ...+..++. .+++.+..++..|+.+|..+..           ..+++.|+.+|++. +..+|..|+..|..+
T Consensus       806 --~~~~~~l~~-aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~  865 (897)
T PRK13800        806 --PDDVAAATA-ALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW  865 (897)
T ss_pred             --chhHHHHHH-HhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc
Confidence              112233444 3444555566666666655421           23447788888776 788888888888765

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.72  E-value=9.4e-09  Score=92.05  Aligned_cols=48  Identities=19%  Similarity=0.352  Sum_probs=40.3

Q ss_pred             CCcccccccccccCCc--------eEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           10 PHLFRCPISLDLFTDP--------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~P--------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      .++..|+||++.+.++        +.++|||.||..||.+|+. ...+||+||..+.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence            4568999999987653        4468999999999999987 5678999998765

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.68  E-value=2.6e-05  Score=76.32  Aligned_cols=243  Identities=14%  Similarity=0.107  Sum_probs=169.1

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc-----CCchHHHHHHhhcCCHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE-----ESKMESFIVLFEHGSCSIKKRLCH  210 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~-----~g~i~~Lv~~L~~~~~~~~~~aa~  210 (401)
                      ...+..++.+|+..+.       .++.++.+. ++.-|..+++.....+.+     .....+++.+|.+++.-++..++.
T Consensus        52 ~~y~~~~l~ll~~~~~-------~d~vqyvL~-Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~  123 (429)
T cd00256          52 GQYVKTFVNLLSQIDK-------DDTVRYVLT-LIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFS  123 (429)
T ss_pred             HHHHHHHHHHHhccCc-------HHHHHHHHH-HHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHH
Confidence            3567888888876543       568888888 777776555544333333     356788889998888889999999


Q ss_pred             HHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C-CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcc
Q 015728          211 LVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H-NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALT  288 (401)
Q Consensus       211 ~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~  288 (401)
                      +|..+++...   .+-... ...-.+.-|...|+ . +...+..++.+|.+|-..++.|..+++.+++++|+.+|+.. .
T Consensus       124 iLt~l~~~~~---~~~~~~-~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~-~  198 (429)
T cd00256         124 ILAKLACFGL---AKMEGS-DLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNA-T  198 (429)
T ss_pred             HHHHHHhcCc---cccchh-HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhc-c
Confidence            9999844332   110000 00012234445553 2 35588889999999999999999999999999999999842 1


Q ss_pred             ccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC------HHHHHHHHHcC
Q 015728          289 RERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS------LQAREEAICAG  362 (401)
Q Consensus       289 ~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~g  362 (401)
                      .+.+++=.++-+++.|+-.++....+ .+.+.|+.|++.+.....+++.+.++.+|.|+...+      ......|+..|
T Consensus       199 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~-~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~  277 (429)
T cd00256         199 LGFQLQYQSIFCIWLLTFNPHAAEVL-KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK  277 (429)
T ss_pred             ccHHHHHHHHHHHHHHhccHHHHHhh-ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC
Confidence            25577778999999999988877766 478999999995544456788999999999998743      24556777777


Q ss_pred             cHHHHHHHhhcC-CCHHHHHHHHHHHHHHHH
Q 015728          363 VLTQLLLLLQSQ-CSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       363 ~v~~L~~ll~~~-~~~~~~~~A~~~L~~l~~  392 (401)
                      .++.+-.|.... .++...+.-..+-..|.+
T Consensus       278 l~~~l~~L~~rk~~DedL~edl~~L~e~L~~  308 (429)
T cd00256         278 VLKTLQSLEQRKYDDEDLTDDLKFLTEELKN  308 (429)
T ss_pred             hHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            766555554333 345555555555555544

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.65  E-value=2.6e-08  Score=65.51  Aligned_cols=43  Identities=44%  Similarity=0.939  Sum_probs=37.9

Q ss_pred             cccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCccc
Q 015728           14 RCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQT   56 (401)
Q Consensus        14 ~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~   56 (401)
                      .|+||.+.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999998888765 999999999999998667789999864

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.5e-06  Score=81.28  Aligned_cols=188  Identities=15%  Similarity=0.163  Sum_probs=146.3

Q ss_pred             hhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhh
Q 015728          102 LQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESL  181 (401)
Q Consensus       102 l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~  181 (401)
                      +.+.+.+.+.+..|+..|..++..=+ |...|...|+..+++..|++++.        .+++.|++ ++.....+++...
T Consensus        90 ~~~~s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~--------~lR~~Aa~-Vigt~~qNNP~~Q  159 (342)
T KOG2160|consen   90 LNSSSVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDA--------ELRELAAR-VIGTAVQNNPKSQ  159 (342)
T ss_pred             cCcccCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcH--------HHHHHHHH-HHHHHHhcCHHHH
Confidence            45567789999999999999997765 88889999999999999988874        59999999 9998888888877


Q ss_pred             hhcccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c--CCchhHHHHHHHH
Q 015728          182 NLLNEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H--HNSEASDAGVRAF  257 (401)
Q Consensus       182 ~~v~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~--~~~~~~~~a~~aL  257 (401)
                      ..+.+.|+++.|+..|.+. +...+..|..++..++....   ..-..+-...| ...|..+| +  .+...++.++..+
T Consensus       160 e~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~---~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll  235 (342)
T KOG2160|consen  160 EQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNK---PGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLL  235 (342)
T ss_pred             HHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCc---HHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHH
Confidence            7777999999999999865 45788899999988855544   33333444445 69999999 3  2445899999999


Q ss_pred             HHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          258 SALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       258 ~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      .+|.. .......+-..|....++.+..   ..+.++.+.++.++..+..
T Consensus       236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~---~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  236 SLLLQEDKSDEDIASSLGFQRVLENLIS---SLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHHhhhhhhhHHHHhhhhHHHHHHhh---ccchhhhHHHHHHHHHHHH
Confidence            99884 5555555555677777777776   5677788888877766654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.64  E-value=8.1e-06  Score=88.57  Aligned_cols=151  Identities=13%  Similarity=0.064  Sum_probs=110.5

Q ss_pred             hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhH
Q 015728          190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRK  268 (401)
Q Consensus       190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~  268 (401)
                      .+.|...+.+++.++|..++.+|..+ ....            .+.++.|..+++ +++.++..|+.+|.++...     
T Consensus       744 ~~~l~~~l~D~~~~VR~~aa~aL~~~-~~~~------------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-----  805 (897)
T PRK13800        744 VESVAGAATDENREVRIAVAKGLATL-GAGG------------APAGDAVRALTGDPDPLVRAAALAALAELGCP-----  805 (897)
T ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHh-cccc------------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-----
Confidence            44556667777777777777777766 3221            134688888884 5667999999998877432     


Q ss_pred             HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                          ..+++.++..|.   +++..++..|+.+|..+.           ....++.|+. ++++.+..++..|+.+|..+.
T Consensus       806 ----~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~-----------~~~a~~~L~~-~L~D~~~~VR~~A~~aL~~~~  866 (897)
T PRK13800        806 ----PDDVAAATAALR---ASAWQVRQGAARALAGAA-----------ADVAVPALVE-ALTDPHLDVRKAAVLALTRWP  866 (897)
T ss_pred             ----chhHHHHHHHhc---CCChHHHHHHHHHHHhcc-----------ccchHHHHHH-HhcCCCHHHHHHHHHHHhccC
Confidence                113366888888   678889999999998653           4456789999 678888899999999998862


Q ss_pred             cCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728          349 CDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLK  388 (401)
Q Consensus       349 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~  388 (401)
                       .++.         +.+.|...++++ +..+|+.|..+|+
T Consensus       867 -~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~  895 (897)
T PRK13800        867 -GDPA---------ARDALTTALTDS-DADVRAYARRALA  895 (897)
T ss_pred             -CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence             2333         246677778776 8999999999886

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2.3e-08  Score=95.35  Aligned_cols=69  Identities=29%  Similarity=0.595  Sum_probs=60.5

Q ss_pred             CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728            8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      ...+++.||||.++|.+|++++|||+||..|+..++. ....||.|+. ... .+.+|..+.++++.+++.+
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence            4568899999999999998899999999999999998 7788999996 333 6679999999999998876

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.2e-05  Score=75.34  Aligned_cols=179  Identities=15%  Similarity=0.162  Sum_probs=139.2

Q ss_pred             cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC-CCchhHHHHhcCcH
Q 015728          199 HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS-TETNRKTLVQEGAI  276 (401)
Q Consensus       199 ~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v  276 (401)
                      +.+.+.++.|..-|..+ ..+-   +|...+... |++.+++..+ .++..+++.|+++|...++ ++..+..+.+.|+.
T Consensus        94 s~~le~ke~ald~Le~l-ve~i---DnAndl~~~-ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L  168 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEEL-VEDI---DNANDLISL-GGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL  168 (342)
T ss_pred             cCCHHHHHHHHHHHHHH-HHhh---hhHHhHhhc-cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence            44678888888888887 4433   788888887 5568888888 4667799999999999985 67789999999999


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHHhc--CChhHHHHHHHHHHHHhcCCHH
Q 015728          277 NGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVFRV--SDHEGSENAINSLMMICCDSLQ  353 (401)
Q Consensus       277 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~~~--~~~~~~~~a~~~L~~l~~~~~~  353 (401)
                      +.|+..|..  +++..++..|+.++..|-++. .+..++. ..++...|... +..  .+...+..++..+..|...+..
T Consensus       169 ~~Ll~~ls~--~~~~~~r~kaL~AissLIRn~~~g~~~fl-~~~G~~~L~~v-l~~~~~~~~lkrK~~~Ll~~Ll~~~~s  244 (342)
T KOG2160|consen  169 SKLLKILSS--DDPNTVRTKALFAISSLIRNNKPGQDEFL-KLNGYQVLRDV-LQSNNTSVKLKRKALFLLSLLLQEDKS  244 (342)
T ss_pred             HHHHHHHcc--CCCchHHHHHHHHHHHHHhcCcHHHHHHH-hcCCHHHHHHH-HHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence            999999985  667778899999999999765 4667775 66779999995 544  4667889999999999887665


Q ss_pred             HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728          354 AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLL  387 (401)
Q Consensus       354 ~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L  387 (401)
                      ....+...|....+..+.... ....++.|...+
T Consensus       245 ~~d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~  277 (342)
T KOG2160|consen  245 DEDIASSLGFQRVLENLISSL-DFEVNEAALTAL  277 (342)
T ss_pred             hhhHHHHhhhhHHHHHHhhcc-chhhhHHHHHHH
Confidence            555666677777777776665 666666665443

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.2e-08  Score=93.76  Aligned_cols=68  Identities=25%  Similarity=0.327  Sum_probs=58.6

Q ss_pred             CCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCC-CCCCCcHHHHHHHHHHH
Q 015728            9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-PSIVPNHTLRHLINQWL   76 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~-~~~~~n~~l~~~i~~~~   76 (401)
                      +..++.||||+++++..+++ .|+|.||..||...+..+...||.||+.+.. +.++++..+..+|.++-
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~  109 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY  109 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence            45679999999999999987 4999999999999999899999999998754 47888888888876654

>smart00184 RING Ring finger

Probab=98.56  E-value=6.4e-08  Score=61.41  Aligned_cols=39  Identities=54%  Similarity=1.047  Sum_probs=35.6

Q ss_pred             ccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCC
Q 015728           15 CPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVT   53 (401)
Q Consensus        15 C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c   53 (401)
                      |+||.+...+++.++|||.||..|+..|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998666779987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PHA02926 zinc finger-like protein; Provisional

Probab=98.50  E-value=7.3e-08  Score=83.43  Aligned_cols=50  Identities=12%  Similarity=0.309  Sum_probs=39.6

Q ss_pred             CCCcccccccccccCC---------ceEcCccccccHHhHHHHHHcC-----CCCCCCCcccCC
Q 015728            9 IPHLFRCPISLDLFTD---------PVTLCTGQTYDRSSIEKWLAAG-----NLTCPVTMQTLH   58 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~---------Pv~~~Cgh~fc~~Ci~~~~~~~-----~~~CP~c~~~~~   58 (401)
                      ..++..|+||++...+         ++..+|+|.||..||..|....     ...||.||..+.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            3457899999997643         3445899999999999999842     356999998875

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.49  E-value=1.5e-07  Score=86.70  Aligned_cols=62  Identities=18%  Similarity=0.342  Sum_probs=45.6

Q ss_pred             Ccccccccccc-cCCce----EcCccccccHHhHHHHHHcCCCCCCCCcccCCCCC----CCCcHHHHHHH
Q 015728           11 HLFRCPISLDL-FTDPV----TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS----IVPNHTLRHLI   72 (401)
Q Consensus        11 ~~~~C~iC~~~-~~~Pv----~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~----~~~n~~l~~~i   72 (401)
                      ++..||+|... +..|-    +.+|||+||..|+...|..+...||.|+..+....    +..+..+.+.+
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV   72 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEV   72 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHH
Confidence            35689999992 34443    12699999999999999877788999999887665    44554444443

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.46  E-value=1.2e-07  Score=62.21  Aligned_cols=41  Identities=17%  Similarity=0.512  Sum_probs=34.5

Q ss_pred             ccccccccc---CCceEcCccccccHHhHHHHHHcCCCCCCCCcc
Q 015728           14 RCPISLDLF---TDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQ   55 (401)
Q Consensus        14 ~C~iC~~~~---~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~   55 (401)
                      .|++|.+.+   ..|+.++|||+||..|+..+. .....||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            489999988   356678999999999999887 45678999974

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.45  E-value=1.1e-07  Score=87.05  Aligned_cols=67  Identities=21%  Similarity=0.381  Sum_probs=55.2

Q ss_pred             CCCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCC----CCCCcHHHHHHHHHH
Q 015728            8 TIPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP----SIVPNHTLRHLINQW   75 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~----~~~~n~~l~~~i~~~   75 (401)
                      ++.+...|.+|..+|.|+.|+ .|-||||+.||.+++.. ..+||.|+..+...    .+..+..++.++.++
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            356688999999999999986 69999999999999995 88999998776432    467778888777543

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.3e-07  Score=83.89  Aligned_cols=51  Identities=16%  Similarity=0.247  Sum_probs=43.6

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHH-HHHcCCCCCCCCcccCCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEK-WLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~-~~~~~~~~CP~c~~~~~~~   60 (401)
                      ..+++|+||.+.+.+|..++|||.||..||.. |-.+....||.||.....+
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            35899999999999999999999999999999 5554555699999876554

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.2e-07  Score=91.62  Aligned_cols=69  Identities=20%  Similarity=0.416  Sum_probs=53.8

Q ss_pred             cccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCCCCCCC----cHHHHHHHHHHHHhCC
Q 015728           12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHDPSIVP----NHTLRHLINQWLQMGG   80 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~~~~~~----n~~l~~~i~~~~~~~~   80 (401)
                      +..||||++...-|+.+.|||.||..||.++|..    +...||.|+..+..+++.+    +..-..-++.+..-||
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng  262 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG  262 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence            7899999999999999999999999999999985    3578999998887754332    2223333666666676

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.9e-05  Score=80.76  Aligned_cols=201  Identities=14%  Similarity=0.202  Sum_probs=151.0

Q ss_pred             HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728          161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI  239 (401)
Q Consensus       161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L  239 (401)
                      .|-+|+.-+--+|...+++....+--...||.|+.+|+.. +.+++..|+++|.+|.-...   .....+++. ++||.|
T Consensus       184 ~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP---~S~a~vV~~-~aIPvl  259 (1051)
T KOG0168|consen  184 QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP---RSSAIVVDE-HAIPVL  259 (1051)
T ss_pred             HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc---chhheeecc-cchHHH
Confidence            5555655355566667776655443345799999999865 78999999999999943333   667777774 899999


Q ss_pred             HHHc--cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC--CHhhHHHHH
Q 015728          240 ISLV--HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA--IENSKDALI  315 (401)
Q Consensus       240 v~lL--~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~--~~~~~~~~~  315 (401)
                      +.-|  -...++.++++.||-.|++.+.  ..+.++|++-..+..|.   =-+..++..|+++-.|.|.  .++.-..++
T Consensus       260 ~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylD---FFSi~aQR~AlaiaaN~Cksi~sd~f~~v~  334 (1051)
T KOG0168|consen  260 LEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLD---FFSIHAQRVALAIAANCCKSIRSDEFHFVM  334 (1051)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCccchHHH
Confidence            9866  3566799999999999997553  56789999999999886   2455689999999999996  355666665


Q ss_pred             hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc---CCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728          316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICC---DSLQAREEAICAGVLTQLLLLLQSQ  374 (401)
Q Consensus       316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~v~~L~~ll~~~  374 (401)
                         .++|.|-. ++...+....+.+.-++..++.   ++++.-+++...|.|....+|+...
T Consensus       335 ---ealPlL~~-lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt  392 (1051)
T KOG0168|consen  335 ---EALPLLTP-LLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT  392 (1051)
T ss_pred             ---HHHHHHHH-HHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC
Confidence               57888888 6777776888888888877754   3456666777888887777776543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.41  E-value=5.4e-05  Score=75.67  Aligned_cols=139  Identities=17%  Similarity=0.195  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHH
Q 015728          249 ASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVK  326 (401)
Q Consensus       249 ~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~  326 (401)
                      ...+|..++.+++. ...-+...-+..++.+||++|.   +++..++..++++|.||... ...+..++ ..|+|..+.+
T Consensus       393 ~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~---dp~~~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l~s  468 (678)
T KOG1293|consen  393 FVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM---DPEIMIMGITLGAICNLVMEFSNLKSKFL-RNNGIDILES  468 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh---CcchhHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHHHH
Confidence            44444445555553 2223444556779999999998   78889999999999999965 66778887 7899999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          327 MVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       327 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                       +....+...+..++++|.++..++++..+...-......++..+-.+++..++|-+..+||.|.=
T Consensus       469 -~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  469 -MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             -HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence             56666778999999999999999887776666666666665555555599999999999998864

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.38  E-value=4.7e-06  Score=67.07  Aligned_cols=150  Identities=13%  Similarity=0.158  Sum_probs=120.3

Q ss_pred             HHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH
Q 015728          234 RLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK  311 (401)
Q Consensus       234 g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~  311 (401)
                      |-+..||+=..  .+.++++....=|.|.+-+|.|-..+.+..++...+.-|.   ..+..+++-+.+.|+|||.+..+.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~---e~ne~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE---EQNELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh---cccHHHHHHhHHHHHhhccChHHH
Confidence            66778888773  4677999999999999999999999999999999999999   688899999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728          312 DALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL  389 (401)
Q Consensus       312 ~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~  389 (401)
                      ..|. +++++|..+. .+.+........|+.+|..|+...+.-|.++..-.++..+...-.+. +..-|.-|.+.|..
T Consensus        93 ~~I~-ea~g~plii~-~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~  167 (173)
T KOG4646|consen   93 KFIR-EALGLPLIIF-VLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK  167 (173)
T ss_pred             HHHH-HhcCCceEEe-ecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence            9996 8899999998 56666667788899999999998877887777766666555543233 33444444444443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=3e-05  Score=78.77  Aligned_cols=194  Identities=15%  Similarity=0.218  Sum_probs=157.2

Q ss_pred             CCchHHHHHHhhcCC-HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc---CCchhHHHHHHHHHHhcC
Q 015728          187 ESKMESFIVLFEHGS-CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH---HNSEASDAGVRAFSALCS  262 (401)
Q Consensus       187 ~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~a~~aL~~Ls~  262 (401)
                      +..|+.|++.+.+.+ .+-|..|+..|..+ |.     .+|..++.. | +++|+..|.   .+++..+.++..++++.+
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~-sr-----kYR~~Vga~-G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~   92 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAF-SR-----KYREEVGAQ-G-MKPLIQVLQRDYMDPEIIKYALDTLLILTS   92 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHH-HH-----HHHHHHHHc-c-cHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence            346999999998776 48899999999999 63     889998874 5 599999993   367799999999999987


Q ss_pred             CCc------h-h----------HHHH-hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC--CHhhHHHHHhCCCcHH
Q 015728          263 TET------N-R----------KTLV-QEGAINGLIAYISNALTRERSLAAIAMARIEQLLA--IENSKDALINNPNGVY  322 (401)
Q Consensus       263 ~~~------n-~----------~~iv-~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~--~~~~~~~~~~~~g~i~  322 (401)
                      +++      + +          ..++ ..|-|..|+..+.   ..+-.++-.++..|..|-.  ..+-+..+...+-+|.
T Consensus        93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e---~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS  169 (970)
T KOG0946|consen   93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE---EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGIS  169 (970)
T ss_pred             cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH---hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHH
Confidence            663      2 2          2233 3678999999998   6788899999999998874  5678888888999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCC-CH--HHHHHHHHHHHHHHH
Q 015728          323 ALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQC-SN--RTKTKARMLLKLLRS  392 (401)
Q Consensus       323 ~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~-~~--~~~~~A~~~L~~l~~  392 (401)
                      .++. +++++...++..++-.|..|..++..+++.+.=++++..|+.+++..+ .+  -+-+-+..+|..|-|
T Consensus       170 ~lmd-lL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK  241 (970)
T KOG0946|consen  170 KLMD-LLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK  241 (970)
T ss_pred             HHHH-HHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence            9999 677777678889999999999999888888889999999999997543 33  356666666666655

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=2.4e-07  Score=93.98  Aligned_cols=55  Identities=13%  Similarity=0.319  Sum_probs=49.4

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP   64 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~   64 (401)
                      ..-++||+|..-+++-|.+.|||.||..|+.+.+..+...||.|+..|...++.+
T Consensus       641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            3468999999999999999999999999999999988999999999998776653

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.27  E-value=4.3e-05  Score=76.34  Aligned_cols=148  Identities=11%  Similarity=0.111  Sum_probs=109.7

Q ss_pred             CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhc-CCCchhHHHHhcCcHH
Q 015728          200 GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALC-STETNRKTLVQEGAIN  277 (401)
Q Consensus       200 ~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~  277 (401)
                      .+......|...+.++ +..-  +..+...... .++.+||.++ .++..++..++.+|.||. ...+-|..+++.|+|.
T Consensus       389 kd~~~~aaa~l~~~s~-srsV--~aL~tg~~~~-dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId  464 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSF-SRSV--SALRTGLKRN-DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGID  464 (678)
T ss_pred             ccHHHHHHHHHHHHHH-HHHH--HHHHcCCccc-hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH
Confidence            3455555555555555 3321  1455555444 5679999999 566779999999999999 4777899999999999


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHH
Q 015728          278 GLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA  354 (401)
Q Consensus       278 ~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  354 (401)
                      .+..++.   +.+..++..++++|+++.-..+...+..-....-..++-.+..+.+..++|.+...|.|+.++..+.
T Consensus       465 ~l~s~~~---~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s  538 (678)
T KOG1293|consen  465 ILESMLT---DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS  538 (678)
T ss_pred             HHHHHhc---CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence            9999999   7888999999999999997654443332233333344444678889999999999999999886543

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.26  E-value=3.6e-07  Score=63.10  Aligned_cols=44  Identities=34%  Similarity=0.762  Sum_probs=31.3

Q ss_pred             CcccccccccccCCceEc-CccccccHHhHHHHHHc-CCCCCCCCc
Q 015728           11 HLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPVTM   54 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~-~~~~CP~c~   54 (401)
                      -.++|||++..|.+||.. .|||+|.+..|.+|+.. +...||+.+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            368999999999999985 89999999999999943 467799843

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.25  E-value=0.00012  Score=74.77  Aligned_cols=254  Identities=16%  Similarity=0.221  Sum_probs=171.8

Q ss_pred             HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc
Q 015728           98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE  177 (401)
Q Consensus        98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~  177 (401)
                      +.+.+.  +.++-.|+.|+..+.++.+.++..   +... .++.+..+|.+.+        +.++..|+. ++..+...+
T Consensus       119 v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~--------~~V~~~a~~-~l~~i~~~~  183 (526)
T PF01602_consen  119 VIKLLS--DPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKD--------PSVVSAALS-LLSEIKCND  183 (526)
T ss_dssp             HHHHHH--SSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSS--------HHHHHHHHH-HHHHHHCTH
T ss_pred             HHHHhc--CCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCc--------chhHHHHHH-HHHHHccCc
Confidence            334444  346789999999999999887742   2223 5899999997776        458888888 888771122


Q ss_pred             hhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHH
Q 015728          178 TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRA  256 (401)
Q Consensus       178 ~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~a  256 (401)
                      +....++  ...+..|..++...++-.+.....+|..+ .....  .....    ...++.+..+++ .+..+.-.++.+
T Consensus       184 ~~~~~~~--~~~~~~L~~~l~~~~~~~q~~il~~l~~~-~~~~~--~~~~~----~~~i~~l~~~l~s~~~~V~~e~~~~  254 (526)
T PF01602_consen  184 DSYKSLI--PKLIRILCQLLSDPDPWLQIKILRLLRRY-APMEP--EDADK----NRIIEPLLNLLQSSSPSVVYEAIRL  254 (526)
T ss_dssp             HHHTTHH--HHHHHHHHHHHTCCSHHHHHHHHHHHTTS-TSSSH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhH--HHHHHHhhhcccccchHHHHHHHHHHHhc-ccCCh--hhhhH----HHHHHHHHHHhhccccHHHHHHHHH
Confidence            2112222  23455555556677888898888888877 54431  22211    257788888884 456688999999


Q ss_pred             HHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhH
Q 015728          257 FSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEG  336 (401)
Q Consensus       257 L~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~  336 (401)
                      +..+...+.     .-..++++|+++|.   +.+..++-.++..|..++...  ...+ .  . ....+..+..+.+..+
T Consensus       255 i~~l~~~~~-----~~~~~~~~L~~lL~---s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~-~~~~~~~l~~~~d~~I  320 (526)
T PF01602_consen  255 IIKLSPSPE-----LLQKAINPLIKLLS---SSDPNVRYIALDSLSQLAQSN--PPAV-F--N-QSLILFFLLYDDDPSI  320 (526)
T ss_dssp             HHHHSSSHH-----HHHHHHHHHHHHHT---SSSHHHHHHHHHHHHHHCCHC--HHHH-G--T-HHHHHHHHHCSSSHHH
T ss_pred             HHHhhcchH-----HHHhhHHHHHHHhh---cccchhehhHHHHHHHhhccc--chhh-h--h-hhhhhheecCCCChhH
Confidence            998887555     44558999999999   678889999999999998754  2222 1  1 2222332344677889


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          337 SENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       337 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      +..++.+|..++.. .+.. .     .++.|...+...+++..++.+...+..+...++.
T Consensus       321 r~~~l~lL~~l~~~-~n~~-~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~  373 (526)
T PF01602_consen  321 RKKALDLLYKLANE-SNVK-E-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP  373 (526)
T ss_dssp             HHHHHHHHHHH--H-HHHH-H-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred             HHHHHHHHhhcccc-cchh-h-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence            99999999999864 2333 3     5777888885444777888888888888875554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF05536 Neurochondrin: Neurochondrin

Probab=98.21  E-value=0.0002  Score=72.98  Aligned_cols=237  Identities=17%  Similarity=0.143  Sum_probs=154.4

Q ss_pred             hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchh---hhhhcccCCchHHHHHHhhcC-------CHHHHHHH
Q 015728          139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE---SLNLLNEESKMESFIVLFEHG-------SCSIKKRL  208 (401)
Q Consensus       139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~---~~~~v~~~g~i~~Lv~~L~~~-------~~~~~~~a  208 (401)
                      +..-+.+|++.++.        -+..++. ++..+..+++.   .++.|-++-+.+.+-++|+++       ....+.-|
T Consensus         7 l~~c~~lL~~~~D~--------~rfagL~-lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~La   77 (543)
T PF05536_consen    7 LEKCLSLLKSADDT--------ERFAGLL-LVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLA   77 (543)
T ss_pred             HHHHHHHhccCCcH--------HHHHHHH-HHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence            44556777777643        3455555 66666644432   122344666677778888773       34567788


Q ss_pred             HHHHHHHHhcccchhhhh--hhhccchHHHHHHHHHc-cCCc-hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHH
Q 015728          209 CHLVEVIISSSHETKELC--CKLGKDDRLLREIISLV-HHNS-EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYIS  284 (401)
Q Consensus       209 a~~L~~l~s~~~~~~~~~--~~i~~~~g~i~~Lv~lL-~~~~-~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~  284 (401)
                      ..+|..+ +.++   +.+  ..+   .+-||.|+.++ +.+. +....+..+|..++.+++.+..+++.|+|+.|.+.+.
T Consensus        78 vsvL~~f-~~~~---~~a~~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~  150 (543)
T PF05536_consen   78 VSVLAAF-CRDP---ELASSPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIP  150 (543)
T ss_pred             HHHHHHH-cCCh---hhhcCHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHH
Confidence            8888888 6654   333  233   26789999999 4444 7999999999999999999999999999999999999


Q ss_pred             hhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC----cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH-----HH
Q 015728          285 NALTRERSLAAIAMARIEQLLAIENSKDALINNPN----GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ-----AR  355 (401)
Q Consensus       285 ~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g----~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~-----~~  355 (401)
                      +    .....+.|+.+|.++........ .-.+..    .++.+-+ .+.......+-..+..|..+-...+.     ..
T Consensus       151 ~----~~~~~E~Al~lL~~Lls~~~~~~-~~~~~~~l~~il~~La~-~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~  224 (543)
T PF05536_consen  151 N----QSFQMEIALNLLLNLLSRLGQKS-WAEDSQLLHSILPSLAR-DFSSFHGEDKFELLEFLSAFLPRSPILPLESPP  224 (543)
T ss_pred             h----CcchHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHH-HHHhhccchHHHHHHHHHHhcCcCCccccccCC
Confidence            3    45678899999999886433111 111222    2333333 23222224455567777666544321     11


Q ss_pred             HHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          356 EEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       356 ~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      ..-.-.....-+..+|++..++..|..|..+...+-++.+.+
T Consensus       225 ~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  225 SPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence            122233444556677888878899999998888888766554

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.19  E-value=0.00017  Score=73.82  Aligned_cols=256  Identities=15%  Similarity=0.121  Sum_probs=158.1

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      .....+++.  +.+...|+-+--.+..+...+++.-..     ++..|.+=|.+++        +.++..|+. .+.++.
T Consensus        44 ~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n--------~~~~~lAL~-~l~~i~  107 (526)
T PF01602_consen   44 FMEVIKLIS--SKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPN--------PYIRGLALR-TLSNIR  107 (526)
T ss_dssp             HHHHHCTCS--SSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSS--------HHHHHHHHH-HHHHH-
T ss_pred             HHHHHHHhC--CCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCC--------HHHHHHHHh-hhhhhc
Confidence            333334344  456778888888888888777752222     3556666677665        458888999 888776


Q ss_pred             CCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728          175 VGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG  253 (401)
Q Consensus       175 ~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a  253 (401)
                        ..+..+.     .++.+..+|.++++.+|..|+.++.++ ....     .. ..... .++.+..+|. .++.++.+|
T Consensus       108 --~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i-~~~~-----p~-~~~~~-~~~~l~~lL~d~~~~V~~~a  172 (526)
T PF01602_consen  108 --TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKI-YRKD-----PD-LVEDE-LIPKLKQLLSDKDPSVVSAA  172 (526)
T ss_dssp             --SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHH-HHHC-----HC-CHHGG-HHHHHHHHTTHSSHHHHHHH
T ss_pred             --ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHH-hccC-----HH-HHHHH-HHHHHhhhccCCcchhHHHH
Confidence              2222222     478888899999999999999999999 4322     12 22222 6789999994 566799999


Q ss_pred             HHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC
Q 015728          254 VRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS  332 (401)
Q Consensus       254 ~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~  332 (401)
                      +.++..+ ..+ .+.. .  ..++.++..|.+- +..++-.+...+..|..++........-   ...++.+.. ++++.
T Consensus       173 ~~~l~~i-~~~-~~~~-~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~-~l~s~  243 (526)
T PF01602_consen  173 LSLLSEI-KCN-DDSY-K--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLN-LLQSS  243 (526)
T ss_dssp             HHHHHHH-HCT-HHHH-T--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHH-HHHHH
T ss_pred             HHHHHHH-ccC-cchh-h--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHH-Hhhcc
Confidence            9999999 111 1110 1  3444444444311 1566667777777777777543222210   133555565 34455


Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          333 DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       333 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      ++.+.-.++.++..+.... .     .-..+++.|+.++.+. ++..|..+...|..+....+..
T Consensus       244 ~~~V~~e~~~~i~~l~~~~-~-----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~  301 (526)
T PF01602_consen  244 SPSVVYEAIRLIIKLSPSP-E-----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPA  301 (526)
T ss_dssp             HHHHHHHHHHHHHHHSSSH-H-----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHH
T ss_pred             ccHHHHHHHHHHHHhhcch-H-----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchh
Confidence            5566666777777665542 2     4455667777777654 6677777777777776655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.18  E-value=2e-06  Score=55.47  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=37.8

Q ss_pred             CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          263 TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       263 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      +++++..+++.|+||+|+++|.   +.+.++++.|+++|.+|+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~---~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK---SPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT---SSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHc---CCCHHHHHHHHHHHHHHhC
Confidence            3678999999999999999999   7899999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.18  E-value=9.2e-05  Score=71.26  Aligned_cols=271  Identities=10%  Similarity=0.104  Sum_probs=172.0

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ...+.|.+++.+.+-....+.++.+.|......  .|+..++..| +..++.+-+....       ++.+...+. ++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~-------~e~aR~~~~-il~~  248 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREP-------VELARSVAG-ILEH  248 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCc-------HHHHHHHHH-HHHH
Confidence            445566666666655556688888888777654  5888888766 5555555543332       567788888 8888


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASD  251 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~  251 (401)
                      |-.+.++.-.-++++|++..++-.-+..++....+++.+|.|+ +... ..+.+..|++- .+-+-|..+- +.+.-.+.
T Consensus       249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~-~L~~-~~a~qrrmveK-r~~EWLF~LA~skDel~R~  325 (832)
T KOG3678|consen  249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNC-ALHG-GQAVQRRMVEK-RAAEWLFPLAFSKDELLRL  325 (832)
T ss_pred             HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhh-hhhc-hhHHHHHHHHh-hhhhhhhhhhcchHHHHHH
Confidence            8766665533444889999988777888899999999999999 6653 23666666653 4434555544 34444888


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcC---cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHH
Q 015728          252 AGVRAFSALCSTETNRKTLVQEG---AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMV  328 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G---~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l  328 (401)
                      +|.-+..-|+.+.+--..+.+.|   .|+|++..+..   +             .++.+.....+= +...-++.|+- |
T Consensus       326 ~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP---~-------------~FARD~hd~aQG-~~~d~LqRLvP-l  387 (832)
T KOG3678|consen  326 HACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDP---G-------------RFARDAHDYAQG-RGPDDLQRLVP-L  387 (832)
T ss_pred             HHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCc---c-------------hhhhhhhhhhcc-CChHHHHHhhh-h
Confidence            99999999999888776666666   45566655541   1             112221111111 23345667777 4


Q ss_pred             HhcCChhHHHHHHHHHHHHhcC-C-HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          329 FRVSDHEGSENAINSLMMICCD-S-LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       329 ~~~~~~~~~~~a~~~L~~l~~~-~-~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      +.+..-+++-.++.-|+.=+.- + ..-...+-+-|+|+.|-++..+. ++..-+.|..+|+.+.+-.|-
T Consensus       388 LdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEEVP~  456 (832)
T KOG3678|consen  388 LDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEEVPY  456 (832)
T ss_pred             hhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccccCh
Confidence            5533323333332222211100 0 11233566889999999998766 788888899999998875443

>PF05536 Neurochondrin: Neurochondrin

Probab=98.14  E-value=6.2e-05  Score=76.71  Aligned_cols=154  Identities=15%  Similarity=0.152  Sum_probs=114.3

Q ss_pred             chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc-hhhhhhhhccchHHHHHHHHHccC-------Cc-hhHHHHHHHHHH
Q 015728          189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE-TKELCCKLGKDDRLLREIISLVHH-------NS-EASDAGVRAFSA  259 (401)
Q Consensus       189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~-~~~~~~~i~~~~g~i~~Lv~lL~~-------~~-~~~~~a~~aL~~  259 (401)
                      .+...+.+|++.+.+.|-.+...+.++ -..++ ....++.|-++-|. .+|-++|+.       +. ..+.-|+.+|..
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~-~~~~~~~~~~~~~v~~aig~-~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKL-LDADDEDSQTRRRVFEAIGF-KFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHc-CCCchhhHHHHHHHHHhcCh-hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            466667788877766666666677777 33321 12334455566674 899999932       12 377888888999


Q ss_pred             hcCCCchh--HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHH
Q 015728          260 LCSTETNR--KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGS  337 (401)
Q Consensus       260 Ls~~~~n~--~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~  337 (401)
                      +|..++..  .++++  -||.|++++..  .++..+...+..+|..++..++|+..++ +.|+|+.|.+. ... .+...
T Consensus        84 f~~~~~~a~~~~~~~--~IP~Lle~l~~--~s~~~~v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei-~~~-~~~~~  156 (543)
T PF05536_consen   84 FCRDPELASSPQMVS--RIPLLLEILSS--SSDLETVDDALQCLLAIASSPEGAKALL-ESGAVPALCEI-IPN-QSFQM  156 (543)
T ss_pred             HcCChhhhcCHHHHH--HHHHHHHHHHc--CCchhHHHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHH-HHh-CcchH
Confidence            99977753  55554  79999999984  3334899999999999999999999997 88999999995 444 44789


Q ss_pred             HHHHHHHHHHhcCC
Q 015728          338 ENAINSLMMICCDS  351 (401)
Q Consensus       338 ~~a~~~L~~l~~~~  351 (401)
                      +.|+.+|.+++...
T Consensus       157 E~Al~lL~~Lls~~  170 (543)
T PF05536_consen  157 EIALNLLLNLLSRL  170 (543)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988754

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0006  Score=72.43  Aligned_cols=288  Identities=14%  Similarity=0.115  Sum_probs=162.5

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      +..+.|.+++...++ + .|..|++.+...+...+.++..... ...+|.++..+......    ++.+....++. .|.
T Consensus       159 ~l~~lf~q~~~d~s~-~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~----~d~~~a~~~l~-~l~  231 (1075)
T KOG2171|consen  159 DLLRLFSQTMTDPSS-P-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD----GDDDAAKSALE-ALI  231 (1075)
T ss_pred             HHHHHHHHhccCCcc-h-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc----cchHHHHHHHH-HHH
Confidence            456666677765544 3 9999999999999888755555544 45677777766433221    11234445555 444


Q ss_pred             hhcCCchhh-hhhcccCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHhcccc---------------------------
Q 015728          172 LLLVGETES-LNLLNEESKMESFIVLFEHG--SCSIKKRLCHLVEVIISSSHE---------------------------  221 (401)
Q Consensus       172 ~l~~~~~~~-~~~v~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~s~~~~---------------------------  221 (401)
                      -+....... +..+.  ..|..-+.+..+.  +...|..|..+|..+ +...+                           
T Consensus       232 El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~-~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D  308 (1075)
T KOG2171|consen  232 ELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSL-SEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD  308 (1075)
T ss_pred             HHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHH-HHhhHHHhhhchhhhccHHHHHHHhcCCcccc
Confidence            444333221 22221  1233333333332  334555555555554 32210                           


Q ss_pred             --------h----------------hhhhhhhccchHHHHHHHHHc-----cCCchhHHHHHHHHHHhcC-CCchhHHHH
Q 015728          222 --------T----------------KELCCKLGKDDRLLREIISLV-----HHNSEASDAGVRAFSALCS-TETNRKTLV  271 (401)
Q Consensus       222 --------~----------------~~~~~~i~~~~g~i~~Lv~lL-----~~~~~~~~~a~~aL~~Ls~-~~~n~~~iv  271 (401)
                              .                |.....++.. -++|+++..+     +.+-.-+++|+.+|..++. +++.-....
T Consensus       309 ~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~-~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l  387 (1075)
T KOG2171|consen  309 DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK-QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL  387 (1075)
T ss_pred             hhhccccccccccccCcHHHHHHHHHHHHhcCChh-hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence                    0                0000011100 1223333332     2344466677777666663 332222212


Q ss_pred             hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC--HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728          272 QEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI--ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC  349 (401)
Q Consensus       272 ~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~--~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~  349 (401)
                      + .+++.++..|.   ++++.++-.|+.++..++.+  ++-....  +.-.++.|+..+-+..+++++.+|+.+|.|++.
T Consensus       388 ~-~Il~~Vl~~l~---DphprVr~AA~naigQ~stdl~p~iqk~~--~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E  461 (1075)
T KOG2171|consen  388 P-KILPIVLNGLN---DPHPRVRYAALNAIGQMSTDLQPEIQKKH--HERLPPALIALLDSTQNVRVQAHAAAALVNFSE  461 (1075)
T ss_pred             H-HHHHHHHhhcC---CCCHHHHHHHHHHHHhhhhhhcHHHHHHH--HHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence            1 25666666677   78999999999999999975  4433333  445677888865555677999999999999876


Q ss_pred             CCHHHHHHHHHcCcHHHHHH-HhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          350 DSLQAREEAICAGVLTQLLL-LLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       350 ~~~~~~~~~~~~g~v~~L~~-ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      ......-.=.--+.+.+++. |++++ ++.+|+.+..++.-.+....+.+
T Consensus       462 ~~~~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA~~~F  510 (1075)
T KOG2171|consen  462 ECDKSILEPYLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAAQEKF  510 (1075)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhh
Confidence            54322212223455553444 44555 99999999999998887555544

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.14  E-value=2.7e-06  Score=76.45  Aligned_cols=67  Identities=19%  Similarity=0.455  Sum_probs=56.2

Q ss_pred             ccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCccc-CCCCCCCCcHHHHHHHHHHHHhC
Q 015728           13 FRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQT-LHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus        13 ~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~-~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      +.||+|..++++|+.+ +|+|+||..||...+-...+.||.|... +-...+.++......|+.+.+.+
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq  343 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ  343 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence            8999999999999988 7999999999999888777999999753 33446788888888888876643

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.08  E-value=0.0015  Score=62.39  Aligned_cols=279  Identities=12%  Similarity=0.039  Sum_probs=183.9

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-c-----CChHHHHHHhccCCcccchhhhHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-L-----GFLPLLLKQLFGKAESKFSQVYVQFVEESL  166 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~-----G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~  166 (401)
                      +-+.++..+++-. +..+..+-.+-.+-.+.+.+...-..+.. +     -.-++.+.+|...+..        +.+...
T Consensus        65 ~~v~~fi~LlS~~-~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~--------iv~~~~  135 (442)
T KOG2759|consen   65 QYVKTFINLLSHI-DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTF--------IVEMSF  135 (442)
T ss_pred             HHHHHHHHHhchh-hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChH--------HHHHHH
Confidence            5566677766533 44667777787888887777643332222 1     1256677777666543        566577


Q ss_pred             HHHHHhhcCCchhhhhhcccCC-chHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-
Q 015728          167 SCVQKLLLVGETESLNLLNEES-KMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-  243 (401)
Q Consensus       167 ~~~L~~l~~~~~~~~~~v~~~g-~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-  243 (401)
                      + ++..++.......... +-. ....|...+++ .+.+...-++..|..+ -..+   ++|-.++.+.| +..|+..+ 
T Consensus       136 ~-Ils~la~~g~~~~~~~-e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~l-l~~~---eyR~~~v~adg-~~~l~~~l~  208 (442)
T KOG2759|consen  136 R-ILSKLACFGNCKMELS-ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTL-LRVD---EYRYAFVIADG-VSLLIRILA  208 (442)
T ss_pred             H-HHHHHHHhccccccch-HHHHHHHHHHHHHhccCCCchHHHHHHHHHHH-hcCc---chhheeeecCc-chhhHHHHh
Confidence            7 7777763322111000 111 13344455665 4567778888889888 6665   89999998755 58888888 


Q ss_pred             c--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-------hHHHH
Q 015728          244 H--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-------SKDAL  314 (401)
Q Consensus       244 ~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-------~~~~~  314 (401)
                      +  .+-+++-+..-++|-|+.++.-...+-.-+.|+.|++++++  +..+.+....++++.|+...+.       ...++
T Consensus       209 s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~--~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m  286 (442)
T KOG2759|consen  209 STKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKE--STKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM  286 (442)
T ss_pred             ccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence            3  35679999999999999999988888778999999999996  5667788889999999997652       22344


Q ss_pred             HhCCCcHHHHHHHHHh----------------------------------------------------------------
Q 015728          315 INNPNGVYALVKMVFR----------------------------------------------------------------  330 (401)
Q Consensus       315 ~~~~g~i~~Lv~~l~~----------------------------------------------------------------  330 (401)
                      + .. .++.-++.|..                                                                
T Consensus       287 v-~~-~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenn  364 (442)
T KOG2759|consen  287 V-LC-KVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENN  364 (442)
T ss_pred             H-hc-CchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhcc
Confidence            3 32 33333332211                                                                


Q ss_pred             -------------cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          331 -------------VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       331 -------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                                   +.+|..-..|..=+.....+.++.+..+.+-||=+.++.||.++ ++.+|..|..+++.|--
T Consensus       365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHh
Confidence                         11122222222222223333467777888999999999999998 99999999998887643

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2.8e-06  Score=81.88  Aligned_cols=72  Identities=21%  Similarity=0.378  Sum_probs=55.6

Q ss_pred             cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC-----CCCCcHHHHHHHHHHHH
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP-----SIVPNHTLRHLINQWLQ   77 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~-----~~~~n~~l~~~i~~~~~   77 (401)
                      .+..+..+|.|.||...+..|++++|||+||..|+.+... ....||.|+..+...     ....|+....++..|+.
T Consensus        77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~  153 (398)
T KOG4159|consen   77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLE  153 (398)
T ss_pred             cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhh
Confidence            3445678999999999999999999999999999999766 567799999887642     11135555566666554

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=98.04  E-value=2e-06  Score=72.69  Aligned_cols=59  Identities=15%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHH
Q 015728           12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLI   72 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i   72 (401)
                      .|.|.||...+..||.+.|||.||..|..+-+. ....|-+|++...- .+.....++.|+
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-kg~~C~~Cgk~t~G-~f~V~~d~~kmL  254 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-KGDECGVCGKATYG-RFWVVSDLQKML  254 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhc-cCCcceecchhhcc-ceeHHhhHHHHH
Confidence            489999999999999999999999999988777 45679999886543 233344455553

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.03  E-value=4.8e-06  Score=60.98  Aligned_cols=40  Identities=30%  Similarity=0.647  Sum_probs=31.6

Q ss_pred             cccccccccCC------------ceE-cCccccccHHhHHHHHHcCCCCCCCCc
Q 015728           14 RCPISLDLFTD------------PVT-LCTGQTYDRSSIEKWLAAGNLTCPVTM   54 (401)
Q Consensus        14 ~C~iC~~~~~~------------Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~   54 (401)
                      .|+||++.|.+            |+. .+|||.|...||.+|+. ...+||.||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence            39999999833            333 47999999999999998 555999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.01  E-value=4.8e-05  Score=61.33  Aligned_cols=129  Identities=16%  Similarity=0.169  Sum_probs=102.7

Q ss_pred             CchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCc
Q 015728          188 SKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       188 g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                      +.+..||.-.+. .+.+.|+....=|.|+ +.+.   .|-..+... .++...|+-|. .+...++.+...|+|+|.++.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANF-AYDP---~Nys~Lrql-~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~   90 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANF-AYDP---INYSHLRQL-DVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT   90 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhh-ccCc---chHHHHHHh-hHHHHHHHHhhcccHHHHHHhHHHHHhhccChH
Confidence            456677765544 5788999988889999 8886   666666664 78899999885 566699999999999999999


Q ss_pred             hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHHHHHH
Q 015728          266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      |.+-|+++|++|.++..++   ++.+.+...|+.+|..|+..+. .|..+.     -|.+|+.+.
T Consensus        91 n~~~I~ea~g~plii~~ls---sp~e~tv~sa~~~l~~l~~~~Rt~r~ell-----~p~Vv~~v~  147 (173)
T KOG4646|consen   91 NAKFIREALGLPLIIFVLS---SPPEITVHSAALFLQLLEFGERTERDELL-----SPAVVRTVQ  147 (173)
T ss_pred             HHHHHHHhcCCceEEeecC---CChHHHHHHHHHHHHHhcCcccchhHHhc-----cHHHHHHHH
Confidence            9999999999999999999   6788889999999999986543 445553     345555443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.00  E-value=5.5e-06  Score=53.41  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=35.7

Q ss_pred             CchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728          126 SPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus       126 ~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      ++++++.+++.|+||.|+.+|++++        .+++++|++ +|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~--------~~v~~~a~~-al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPD--------PEVQEEAAW-ALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSS--------HHHHHHHHH-HHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCC--------HHHHHHHHH-HHHHHh
Confidence            4678999999999999999999776        559999999 999886

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.93  E-value=0.0032  Score=61.19  Aligned_cols=268  Identities=15%  Similarity=0.134  Sum_probs=184.7

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE  186 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~  186 (401)
                      ++.+.+..+.+.+|.+..+.+ .-+.+.+.+.=-.++.-|......      ..=+++|+. +.+.+..-+.+.+ .+ -
T Consensus        37 ~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~------~~ER~QALk-liR~~l~~~~~~~-~~-~  106 (371)
T PF14664_consen   37 DSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKN------DVEREQALK-LIRAFLEIKKGPK-EI-P  106 (371)
T ss_pred             CcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCC------hHHHHHHHH-HHHHHHHhcCCcc-cC-C
Confidence            447788888888888887665 566666777666666666544432      234678888 6665553322222 23 4


Q ss_pred             CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728          187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                      .|.+..++.+....+...+..+..+|..+ +..+     -+.+..+ |++..|+..+ ++..+.....+.++..+-.++.
T Consensus       107 ~~vvralvaiae~~~D~lr~~cletL~El-~l~~-----P~lv~~~-gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~  179 (371)
T PF14664_consen  107 RGVVRALVAIAEHEDDRLRRICLETLCEL-ALLN-----PELVAEC-GGIRVLLRALIDGSFSISESLLDTLLYLLDSPR  179 (371)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH-HhhC-----HHHHHHc-CCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc
Confidence            57799999999998889999999999999 7654     3444455 6679999988 5555688889999999999999


Q ss_pred             hhHHHHhcCcHHHHHHHHHhh----ccccc--hHHHHHHHHHHHHhCCHhhHHHHHhCC-CcHHHHHHHHHhcCChhHHH
Q 015728          266 NRKTLVQEGAINGLIAYISNA----LTRER--SLAAIAMARIEQLLAIENSKDALINNP-NGVYALVKMVFRVSDHEGSE  338 (401)
Q Consensus       266 n~~~iv~~G~v~~Lv~lL~~~----~~~~~--~~~~~a~~~L~~La~~~~~~~~~~~~~-g~i~~Lv~~l~~~~~~~~~~  338 (401)
                      .|..+...=-++.++.-+.+.    ..++.  +....+..++..+-+++.|-..+..+. .++..||. .+...+++.++
T Consensus       180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~-~L~~p~~~ir~  258 (371)
T PF14664_consen  180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVD-SLRLPNPEIRK  258 (371)
T ss_pred             hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHH-HHcCCCHHHHH
Confidence            888776533455555555421    01222  345566677777777777777665343 68999999 56666767888


Q ss_pred             HHHHHHHHHhcCC-----------------H-----------------------------------HHHHHHHHcCcHHH
Q 015728          339 NAINSLMMICCDS-----------------L-----------------------------------QAREEAICAGVLTQ  366 (401)
Q Consensus       339 ~a~~~L~~l~~~~-----------------~-----------------------------------~~~~~~~~~g~v~~  366 (401)
                      ..+.+|..+-.-.                 .                                   -....++++|.++.
T Consensus       259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~  338 (371)
T PF14664_consen  259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEA  338 (371)
T ss_pred             HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHH
Confidence            8888876651000                 0                                   01235678999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          367 LLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       367 L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      |+++..+..++....+|.-+|..+-+
T Consensus       339 L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  339 LVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            99999887678899999988887655

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.89  E-value=8.8e-06  Score=79.46  Aligned_cols=69  Identities=23%  Similarity=0.449  Sum_probs=54.3

Q ss_pred             CCCCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC-cHHHHHHHHHHH
Q 015728            7 MTIPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP-NHTLRHLINQWL   76 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~-n~~l~~~i~~~~   76 (401)
                      .++.+++.||+|..++.+|+.+ .|||.||..|+..|... +..||.|+.........+ ....+..+..+.
T Consensus        16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (391)
T KOG0297|consen   16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP   86 (391)
T ss_pred             CCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence            3467789999999999999995 99999999999999985 888999988876553333 444555555443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0034  Score=66.90  Aligned_cols=263  Identities=12%  Similarity=0.083  Sum_probs=155.2

Q ss_pred             hhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcc----cchh---hh-HHHHHHHHHHHHHhhc
Q 015728          105 HEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAES----KFSQ---VY-VQFVEESLSCVQKLLL  174 (401)
Q Consensus       105 ~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~----~~~~---~~-~~~~~~a~~~~L~~l~  174 (401)
                      .+-+...|..|+..|.-+++.-+.-.+....  .-.++.++.+.......    ..+.   ++ ..-...|.. ++-.++
T Consensus       259 ~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~-~lDrlA  337 (1075)
T KOG2171|consen  259 KELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQ-ALDRLA  337 (1075)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHH-HHHHHH
Confidence            3346678889999999998885543333322  22455555554322211    0001   01 111222333 444455


Q ss_pred             CCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728          175 VGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG  253 (401)
Q Consensus       175 ~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a  253 (401)
                      .+=..+ .++  +-.++.+-.+|++.+...|..+..+|..+ +...    .+..++.-..+++..+..|. .++.++.+|
T Consensus       338 ~~L~g~-~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i-~EGc----~~~m~~~l~~Il~~Vl~~l~DphprVr~AA  409 (1075)
T KOG2171|consen  338 LHLGGK-QVL--PPLFEALEAMLQSTEWKERHAALLALSVI-AEGC----SDVMIGNLPKILPIVLNGLNDPHPRVRYAA  409 (1075)
T ss_pred             hcCChh-heh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHH-Hccc----HHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            433222 122  23466666788899999999888888777 4321    12222222234555555553 456799999


Q ss_pred             HHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC
Q 015728          254 VRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS  332 (401)
Q Consensus       254 ~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~  332 (401)
                      ..|+..++.+=. .-.+--..-.+|.|+..+.+  ..+..++.+|+.+|-+++..-.+-..----.+.+..++.++..++
T Consensus       410 ~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~--~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~  487 (1075)
T KOG2171|consen  410 LNAIGQMSTDLQPEIQKKHHERLPPALIALLDS--TQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS  487 (1075)
T ss_pred             HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999996433 33333344477789999985  567789999999999888643222211101234444555566778


Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHH--HcCcHHHHHHHhhcCCCHHHHH
Q 015728          333 DHEGSENAINSLMMICCDSLQAREEAI--CAGVLTQLLLLLQSQCSNRTKT  381 (401)
Q Consensus       333 ~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~v~~L~~ll~~~~~~~~~~  381 (401)
                      .+.+++.++.++..++...+   ..++  =.-.+|.|..+|+......-|+
T Consensus       488 ~~~v~e~vvtaIasvA~AA~---~~F~pY~d~~Mp~L~~~L~n~~~~d~r~  535 (1075)
T KOG2171|consen  488 KPYVQEQAVTAIASVADAAQ---EKFIPYFDRLMPLLKNFLQNADDKDLRE  535 (1075)
T ss_pred             chhHHHHHHHHHHHHHHHHh---hhhHhHHHHHHHHHHHHHhCCCchhhHH
Confidence            88999999999999886532   2222  2446788888888774343333

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=6.9e-06  Score=74.19  Aligned_cols=64  Identities=22%  Similarity=0.200  Sum_probs=48.4

Q ss_pred             cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 015728           12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQ   77 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~   77 (401)
                      .|.|-||.+.|.+||.+.|||+||..|-...+. ....|++|.+.+.. .+.+...|...+..-++
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~g-~~~~akeL~~~L~~kks  304 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTHG-SFNVAKELLVSLKLKKS  304 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhccccc-cCCcceeccccccc-ccchHHHHHHHHHhhhh
Confidence            478999999999999999999999999988777 45679999887643 34444445444444333

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.85  E-value=0.0003  Score=63.77  Aligned_cols=192  Identities=13%  Similarity=0.118  Sum_probs=111.7

Q ss_pred             hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCc
Q 015728          198 EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGA  275 (401)
Q Consensus       198 ~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~  275 (401)
                      .+.+.+.|..|..-|..++... ...+....+... ..++..++..+. ....+.+.|..++..|+..-.+.-.-.-...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGN-APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH--B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            4567788888888888883322 111222222210 122345555553 3456899999999999965444333223448


Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH
Q 015728          276 INGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR  355 (401)
Q Consensus       276 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  355 (401)
                      +|+|++.+.   ++...+++.|..+|..+...-.....+.     ++.+.. ...+.++.++..++..|..+....+...
T Consensus        96 l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~-~~~~Kn~~vR~~~~~~l~~~l~~~~~~~  166 (228)
T PF12348_consen   96 LPPLLKKLG---DSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQ-GLKSKNPQVREECAEWLAIILEKWGSDS  166 (228)
T ss_dssp             HHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHH-HTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHc---cccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHH-HHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence            899999998   5677889999999999987533111111     223344 5677788899999999988766543111


Q ss_pred             HHHHH----cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhcc
Q 015728          356 EEAIC----AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH  400 (401)
Q Consensus       356 ~~~~~----~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~  400 (401)
                      ..+-.    ...++.+...+.++ ++.+|+.|...+..+.++||+-.+.
T Consensus       167 ~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~  214 (228)
T PF12348_consen  167 SVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERAES  214 (228)
T ss_dssp             GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred             hhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhcc
Confidence            12222    34667777778777 9999999999999999999987643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.0066  Score=55.96  Aligned_cols=275  Identities=14%  Similarity=0.156  Sum_probs=173.4

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHH-hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLI-QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      ...+.++|.+.  ++..|..|+.-+..+...  ..+.... +.-.++.+.+++....+          .+.|+. +|.|+
T Consensus         5 l~elv~ll~~~--sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~----------~~~a~~-alVnl   69 (353)
T KOG2973|consen    5 LVELVELLHSL--SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP----------AEPAAT-ALVNL   69 (353)
T ss_pred             HHHHHHHhccC--ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc----------ccHHHH-HHHHH
Confidence            34455666533  567888888888888876  2332222 24468889999877653          456777 88888


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhcc-----chHHHHHHHHHccCC--
Q 015728          174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGK-----DDRLLREIISLVHHN--  246 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~-----~~g~i~~Lv~lL~~~--  246 (401)
                      +.+.. .++++... .+..+++.+..+....-...+.+|.|+ +.+++  .....+..     ..|.+...+...+.+  
T Consensus        70 sq~~~-l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NL-s~~~~--~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n  144 (353)
T KOG2973|consen   70 SQKEE-LRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNL-SRDDD--EVAALLTNLTEKKDSGLMRLARAFCDKSYN  144 (353)
T ss_pred             HhhHH-HHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHh-ccCch--HHHHHHHhcccccccchHHHHHHHhCcccc
Confidence            85543 34444333 788888888776555555667799999 77652  22221111     124433333344322  


Q ss_pred             -chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchH-HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHH
Q 015728          247 -SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSL-AAIAMARIEQLLAIENSKDALINNPNGVYAL  324 (401)
Q Consensus       247 -~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~-~~~a~~~L~~La~~~~~~~~~~~~~g~i~~L  324 (401)
                       ..-..+.+.++.||++.+..|..+.+...+|.-.-+-.+  +.+..+ +..-+++|.|.|-+......+. + ..+..|
T Consensus       145 ~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft--~~~s~vRr~GvagtlkN~cFd~~~h~~lL-~-e~~~lL  220 (353)
T KOG2973|consen  145 AYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFT--SEDSQVRRGGVAGTLKNCCFDAKLHEVLL-D-ESINLL  220 (353)
T ss_pred             cccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccc--ccchhhhccchHHHHHhhhccchhHHHHh-c-chHHHH
Confidence             236678888999999999999999887744432222221  212223 3457889999998888887776 3 334444


Q ss_pred             HHHHH----------------------------hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC
Q 015728          325 VKMVF----------------------------RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS  376 (401)
Q Consensus       325 v~~l~----------------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~  376 (401)
                      ..+++                            +..++.++..-+.+|..||.. ...|+.+.+.|+-+.|-.+-.-..+
T Consensus       221 p~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~d  299 (353)
T KOG2973|consen  221 PAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEED  299 (353)
T ss_pred             HHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCc
Confidence            44221                            135677888999999999976 5678666666666665555443346


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 015728          377 NRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       377 ~~~~~~A~~~L~~l~~~~  394 (401)
                      +..++..-.+..++.+..
T Consensus       300 ed~~~ace~vvq~Lv~~e  317 (353)
T KOG2973|consen  300 EDIREACEQVVQMLVRLE  317 (353)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            778888888888887733

>PTZ00429 beta-adaptin; Provisional

Probab=97.79  E-value=0.011  Score=62.45  Aligned_cols=212  Identities=9%  Similarity=0.050  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728          159 VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE  238 (401)
Q Consensus       159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~  238 (401)
                      +.++-.|+. .|..+..  .+..+     -.++++.+.|.+.++-+|..|+.++.++ -..+     ...+.. .|.++.
T Consensus       119 p~IRaLALR-tLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kl-y~~~-----pelv~~-~~~~~~  183 (746)
T PTZ00429        119 PVVRALAVR-TMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKL-FHDD-----MQLFYQ-QDFKKD  183 (746)
T ss_pred             HHHHHHHHH-HHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhhC-----cccccc-cchHHH
Confidence            446766666 5555432  11221     2356667777788888999999888888 4322     122223 478888


Q ss_pred             HHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhC
Q 015728          239 IISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINN  317 (401)
Q Consensus       239 Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~  317 (401)
                      |..+| +.++.++.+|+.+|..+......+.. ...+.+..|+..|.   .-++-.+-..+.+|....  +......   
T Consensus       184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~---e~~EW~Qi~IL~lL~~y~--P~~~~e~---  254 (746)
T PTZ00429        184 LVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLP---ECNEWGQLYILELLAAQR--PSDKESA---  254 (746)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhh---cCChHHHHHHHHHHHhcC--CCCcHHH---
Confidence            88888 45677899999999998754333221 23445556666665   344445555555554322  2111111   


Q ss_pred             CCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          318 PNGVYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       318 ~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      ...+..+.. .+++.++.+.-.|++++.++.... ++....+ -.....+|+.|+ ++ ++++|..+..-+..+....|+
T Consensus       255 ~~il~~l~~-~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~  330 (746)
T PTZ00429        255 ETLLTRVLP-RMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPN  330 (746)
T ss_pred             HHHHHHHHH-HhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHH
Confidence            123455555 355677788889999999987652 2322221 122336677774 44 778999999888888887776


Q ss_pred             hh
Q 015728          397 EL  398 (401)
Q Consensus       397 ~~  398 (401)
                      -+
T Consensus       331 lf  332 (746)
T PTZ00429        331 LL  332 (746)
T ss_pred             HH
Confidence            44

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.77  E-value=0.007  Score=60.51  Aligned_cols=274  Identities=14%  Similarity=0.064  Sum_probs=171.1

Q ss_pred             HHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCC--cccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHH
Q 015728          116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKA--ESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESF  193 (401)
Q Consensus       116 ~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~--~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~L  193 (401)
                      +..|+.+.++.. +...+....++..|.++-.=..  ...+...+..+..+|+. .|.|+-..+...++...+.|..+.+
T Consensus         2 L~~LRiLsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALK-CL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRILSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALK-CLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHHccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHH-HHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            456666665543 6666666666777777651000  00001124678999999 6666666777778888799999999


Q ss_pred             HHHhhcC-----CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----cC--------------CchhH
Q 015728          194 IVLFEHG-----SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----HH--------------NSEAS  250 (401)
Q Consensus       194 v~~L~~~-----~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~~--------------~~~~~  250 (401)
                      +..|+..     +.+..--..++|+-+++...   +.+..+....+++..++..|    ..              +..+.
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~---~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l  156 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRP---DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL  156 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCCh---hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence            9999876     67788888889988844444   56666655546667666655    10              11267


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh---c---cccchHHHHHHHHHHHHhCCH-hh-------HHHH--
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA---L---TRERSLAAIAMARIEQLLAIE-NS-------KDAL--  314 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~---~---~~~~~~~~~a~~~L~~La~~~-~~-------~~~~--  314 (401)
                      ..+++.++|+.........--+.+.++.|+.+|...   .   .+.......++.+|.++-... +.       ...+  
T Consensus       157 ~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~  236 (446)
T PF10165_consen  157 SEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP  236 (446)
T ss_pred             HHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence            788999999985444332223456778877777532   1   122355667777777773211 11       0000  


Q ss_pred             -HhCCCcHHHHHHHHHhc----CCh---hHHHHHHHHHHHHhcCCHHHHHHHHH----------------cCcHHHHHHH
Q 015728          315 -INNPNGVYALVKMVFRV----SDH---EGSENAINSLMMICCDSLQAREEAIC----------------AGVLTQLLLL  370 (401)
Q Consensus       315 -~~~~g~i~~Lv~~l~~~----~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~----------------~g~v~~L~~l  370 (401)
                       ..+...|..|++.|-+.    ...   ..-..-+.+|..++..++..|+-+..                ...-..|+.+
T Consensus       237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrL  316 (446)
T PF10165_consen  237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRL  316 (446)
T ss_pred             CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHH
Confidence             12334677777743211    111   23344677778888777666655543                2344679999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728          371 LQSQCSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       371 l~~~~~~~~~~~A~~~L~~l~~~~~  395 (401)
                      |.+. .+..|..++.+|..|++--+
T Consensus       317 mt~~-~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  317 MTSP-DPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             hCCC-CchHHHHHHHHHHHHHhhhH
Confidence            9888 59999999999999987443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>TIGR02270 conserved hypothetical protein

Probab=97.76  E-value=0.005  Score=60.57  Aligned_cols=29  Identities=10%  Similarity=-0.013  Sum_probs=21.8

Q ss_pred             cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          361 AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       361 ~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ..+++.|+..|...   ..++.|...++.+..
T Consensus       268 p~av~~L~~~l~d~---~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       268 VEAAPWCLEAMREP---PWARLAGEAFSLITG  296 (410)
T ss_pred             cchHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence            34678888887554   588888888888765

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.0015  Score=60.11  Aligned_cols=190  Identities=16%  Similarity=0.162  Sum_probs=129.6

Q ss_pred             hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcCCCchhHH
Q 015728          190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKT  269 (401)
Q Consensus       190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~  269 (401)
                      .-.++.+|.+.++.+|..|..-+..+ ...    ..+.....+.-.++.+..++....+ .+.|+.+|.|++..+.-++.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~l-t~~----~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~   78 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGL-TGR----GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKK   78 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhc-ccc----chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHH
Confidence            34578889999999999988888777 332    1222222233567888888854433 78899999999999999999


Q ss_pred             HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH-hCC----CcHHHHHHHHHhcCCh--hHHHHHHH
Q 015728          270 LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI-NNP----NGVYALVKMVFRVSDH--EGSENAIN  342 (401)
Q Consensus       270 iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~-~~~----g~i~~Lv~~l~~~~~~--~~~~~a~~  342 (401)
                      +.+. .+..++..+.   ++...+...++.+|.||++.+.....+. ...    .++..++....+.+-.  ..-.+-+.
T Consensus        79 ll~~-~~k~l~~~~~---~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~  154 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLT---DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP  154 (353)
T ss_pred             HHHH-HHHHHHHHhc---CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence            9887 7777777777   4556788999999999998776554442 222    4566666655544432  34556788


Q ss_pred             HHHHHhcCCHHHHHHHHHcCcH--HHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          343 SLMMICCDSLQAREEAICAGVL--TQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       343 ~L~~l~~~~~~~~~~~~~~g~v--~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      ++.+|++. ...|.-+.....+  +.|+.+-+.+ +..-|...+++|+.++
T Consensus       155 vf~nls~~-~~gR~l~~~~k~~p~~kll~ft~~~-s~vRr~GvagtlkN~c  203 (353)
T KOG2973|consen  155 VFANLSQF-EAGRKLLLEPKRFPDQKLLPFTSED-SQVRRGGVAGTLKNCC  203 (353)
T ss_pred             HHHHHhhh-hhhhhHhcchhhhhHhhhhcccccc-hhhhccchHHHHHhhh
Confidence            88999876 4556555544433  3455554423 5666777788887743

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.66  E-value=0.00026  Score=53.63  Aligned_cols=86  Identities=13%  Similarity=0.264  Sum_probs=66.8

Q ss_pred             hHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchh
Q 015728          190 MESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNR  267 (401)
Q Consensus       190 i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~  267 (401)
                      |+.|++.| ++++..+|..++.+|..+ .             . ..+++.|+.+++ +++.++..|+.+|..+.      
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-~-------------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL-G-------------D-PEAIPALIELLKDEDPMVRRAAARALGRIG------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC-T-------------H-HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc-C-------------C-HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------
Confidence            67899988 778899999988888655 2             1 256899999994 56779999999999872      


Q ss_pred             HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHH
Q 015728          268 KTLVQEGAINGLIAYISNALTRERSLAAIAMARIE  302 (401)
Q Consensus       268 ~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~  302 (401)
                          +..+++.|.+++.+  +.+..++..|+.+|.
T Consensus        60 ----~~~~~~~L~~~l~~--~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ----DPEAIPALIKLLQD--DDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHcC--CCcHHHHHHHHhhcC
Confidence                34599999999984  445556888888774

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=3e-05  Score=72.05  Aligned_cols=48  Identities=23%  Similarity=0.478  Sum_probs=40.5

Q ss_pred             CCccccccccccc-CC------------ceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           10 PHLFRCPISLDLF-TD------------PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        10 ~~~~~C~iC~~~~-~~------------Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      .++-.|.||++-| ..            |..++|||.+...|+..|.. +..+||.||.++.
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~E-RqQTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLE-RQQTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence            3578999999974 33            36799999999999999998 7889999999853

>PTZ00429 beta-adaptin; Provisional

Probab=97.65  E-value=0.017  Score=61.10  Aligned_cols=212  Identities=13%  Similarity=0.055  Sum_probs=135.6

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      ..+.+.+.|.+.  +...+++|++++-..+......      ..+.+..++++.+.+-        +++.-..- .+.++
T Consensus        33 e~~ELr~~L~s~--~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~--------elKKLvYL-YL~~y   95 (746)
T PTZ00429         33 EGAELQNDLNGT--DSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDL--------ELKKLVYL-YVLST   95 (746)
T ss_pred             hHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCH--------HHHHHHHH-HHHHH
Confidence            345556666533  4668899999888777655322      2246667777776653        34443333 44445


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHH
Q 015728          174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDA  252 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~  252 (401)
                      +..+++. .++    ++..+.+-+.++++.+|..|.++|.++ ..       ...+ +  -+++++.+.+. .++-+++.
T Consensus        96 a~~~pel-alL----aINtl~KDl~d~Np~IRaLALRtLs~I-r~-------~~i~-e--~l~~~lkk~L~D~~pYVRKt  159 (746)
T PTZ00429         96 ARLQPEK-ALL----AVNTFLQDTTNSSPVVRALAVRTMMCI-RV-------SSVL-E--YTLEPLRRAVADPDPYVRKT  159 (746)
T ss_pred             cccChHH-HHH----HHHHHHHHcCCCCHHHHHHHHHHHHcC-Cc-------HHHH-H--HHHHHHHHHhcCCCHHHHHH
Confidence            4333332 233    377788888889999999988888777 32       2222 2  35577777774 45669999


Q ss_pred             HHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC
Q 015728          253 GVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS  332 (401)
Q Consensus       253 a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~  332 (401)
                      |+.++..+-....  ..+.+.|.++.|.++|.   +.+..++.+|+.+|..+......+..+.  .+.+..|+.. +..-
T Consensus       160 Aalai~Kly~~~p--elv~~~~~~~~L~~LL~---D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~-L~e~  231 (746)
T PTZ00429        160 AAMGLGKLFHDDM--QLFYQQDFKKDLVELLN---DNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYH-LPEC  231 (746)
T ss_pred             HHHHHHHHHhhCc--ccccccchHHHHHHHhc---CCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHH-hhcC
Confidence            9999999975333  23456789999999998   7899999999999999985433332221  2345556653 3333


Q ss_pred             ChhHHHHHHHHHHH
Q 015728          333 DHEGSENAINSLMM  346 (401)
Q Consensus       333 ~~~~~~~a~~~L~~  346 (401)
                      ++-.+-..+.+|..
T Consensus       232 ~EW~Qi~IL~lL~~  245 (746)
T PTZ00429        232 NEWGQLYILELLAA  245 (746)
T ss_pred             ChHHHHHHHHHHHh
Confidence            44556555555544

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=3e-05  Score=72.94  Aligned_cols=46  Identities=22%  Similarity=0.519  Sum_probs=38.5

Q ss_pred             ccccccccccCCc--e-EcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           13 FRCPISLDLFTDP--V-TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        13 ~~C~iC~~~~~~P--v-~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      ..|.||++.|.+-  + .+||+|.|...||..|+.+....||+|+....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            5999999988742  3 37999999999999999976566999988654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.62  E-value=0.00063  Score=61.61  Aligned_cols=186  Identities=10%  Similarity=0.144  Sum_probs=109.4

Q ss_pred             hhhhcChHHHHHHHHHHHHHHhcC--chhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCch
Q 015728          103 QSHEATLETKLQIVQKIHVVLRES--PPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGET  178 (401)
Q Consensus       103 ~~~~~~~~~~~~a~~~L~~l~~~~--~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~  178 (401)
                      +..+.+.+.|.+|+..|+.+..++  ......+.+  ...+..++..+.+...        .+...|+. ++..++..-.
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs--------~v~~~A~~-~l~~l~~~l~   85 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS--------KVSKTACQ-LLSDLARQLG   85 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----------HHHHHHH-HHHHHHHHHG
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH--------HHHHHHHH-HHHHHHHHHh
Confidence            455678999999999999999998  334444433  2455666666655443        37788888 7776663322


Q ss_pred             hhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHH-HHHHHHHc-cCCchhHHHHHHH
Q 015728          179 ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL-LREIISLV-HHNSEASDAGVRA  256 (401)
Q Consensus       179 ~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~-i~~Lv~lL-~~~~~~~~~a~~a  256 (401)
                      ..-+.. -...+|.|+..+.+++..+++.|..+|..+ ...-      . + . ..+ ++.+...+ +.++.++..++..
T Consensus        86 ~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i-~~~~------~-~-~-~~~~~~~l~~~~~~Kn~~vR~~~~~~  154 (228)
T PF12348_consen   86 SHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAI-IESC------S-Y-S-PKILLEILSQGLKSKNPQVREECAEW  154 (228)
T ss_dssp             GGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHH-HTTS--------H----HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred             HhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHH-HHHC------C-c-H-HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            221112 124689999999888888999999999998 3221      1 0 1 123 45555555 4566799999999


Q ss_pred             HHHhcC-CCchhHHHHh----cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH
Q 015728          257 FSALCS-TETNRKTLVQ----EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK  311 (401)
Q Consensus       257 L~~Ls~-~~~n~~~iv~----~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~  311 (401)
                      |..+.. .+.+...+-.    ...++.+.+.+.   +++.++++.|-.++..+...-..+
T Consensus       155 l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~---D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  155 LAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS---DADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             HHHHHTT-----GGG--HHHHHHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHccchHhhhcccchHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHCCHh
Confidence            888764 3312222222    347778888888   789999999999999987654443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.011  Score=56.92  Aligned_cols=243  Identities=14%  Similarity=0.178  Sum_probs=167.1

Q ss_pred             HHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc-----hh----hhhhcc
Q 015728          115 IVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE-----TE----SLNLLN  185 (401)
Q Consensus       115 a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~-----~~----~~~~v~  185 (401)
                      .++.+.-++.- |.-...+++.++++.|+.+|.....        ++.-..+. +|.-|+-.|     ++    ....++
T Consensus       104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNt--------DI~iavvd-LLqELTD~Dv~~es~egAevLidaLv  173 (536)
T KOG2734|consen  104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENT--------DIAIAVVD-LLQELTDEDVLYESEEGAEVLIDALV  173 (536)
T ss_pred             HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCc--------hhHHHHHH-HHHHhhhhcccccccccHHHHHHHHH
Confidence            55566666544 4466678899999999999977653        46666677 888777322     11    123345


Q ss_pred             cCCchHHHHHHhhcCCH------HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC--C-chhHHHHHHH
Q 015728          186 EESKMESFIVLFEHGSC------SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH--N-SEASDAGVRA  256 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~------~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~-~~~~~~a~~a  256 (401)
                      +.+.++.|++-+.+=+.      ...++....+.|++...+   +++..+++. |.+.-|+.=+.+  . ..-+.+|..+
T Consensus       174 dg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~---~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEi  249 (536)
T KOG2734|consen  174 DGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRP---AICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEI  249 (536)
T ss_pred             hccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccH---HHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHH
Confidence            77888888877654332      334566677888855555   788888775 776666663422  2 3467888888


Q ss_pred             HHHhcCCCc-hhHHHHhcCcHHHHHHHHHh--hcc----ccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728          257 FSALCSTET-NRKTLVQEGAINGLIAYISN--ALT----RERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       257 L~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~--~~~----~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      |.-+-.+.+ |+...-.-.+|..+++-+.-  .++    +..+..++-...|+.+-..++||..+. .+.+++-. .+++
T Consensus       250 Laillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl-~~EGlqLm-~Lml  327 (536)
T KOG2734|consen  250 LAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFL-KGEGLQLM-NLML  327 (536)
T ss_pred             HHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhh-ccccHHHH-HHHH
Confidence            888776554 88888899999999987731  012    234667788888888888999999997 55555544 4466


Q ss_pred             hcCChhHHHHHHHHHHHHhcCCH--HHHHHHHHcCcHHHHHH-HhhcC
Q 015728          330 RVSDHEGSENAINSLMMICCDSL--QAREEAICAGVLTQLLL-LLQSQ  374 (401)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~v~~L~~-ll~~~  374 (401)
                      +... ..+..++++|-.+..+++  .....+++.+++...+. +|+.+
T Consensus       328 r~Kk-~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p  374 (536)
T KOG2734|consen  328 REKK-VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTP  374 (536)
T ss_pred             HHHH-HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCc
Confidence            6643 577789999988877765  55668888888877666 45443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.58  E-value=0.019  Score=57.34  Aligned_cols=253  Identities=13%  Similarity=0.126  Sum_probs=157.6

Q ss_pred             CChhhHHHHHHhh--------hhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHH
Q 015728           90 ATIDSLSTLKHSL--------QSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQF  161 (401)
Q Consensus        90 ~~~~~~~~l~~~l--------~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~  161 (401)
                      .+++.+.+|.+.-        .....+.....+|+++|.|..-.++..|+.+.+.|+.+.++..|+.....   ..+.++
T Consensus        19 ~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~---~~~~d~   95 (446)
T PF10165_consen   19 FTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS---SQPSDV   95 (446)
T ss_pred             ccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc---CCChhH
Confidence            4556666655422        13345788999999999999999999999999999999999999876321   012457


Q ss_pred             HHHHHHHHHHhhcCCchhh-hhhcccCCchHHHHHHhhc--------C---------CHHHHHHHHHHHHHHHhcccchh
Q 015728          162 VEESLSCVQKLLLVGETES-LNLLNEESKMESFIVLFEH--------G---------SCSIKKRLCHLVEVIISSSHETK  223 (401)
Q Consensus       162 ~~~a~~~~L~~l~~~~~~~-~~~v~~~g~i~~Lv~~L~~--------~---------~~~~~~~aa~~L~~l~s~~~~~~  223 (401)
                      ...... +|..++...... .+++.+.+++..++..|..        .         +......+..+++|+ .....  
T Consensus        96 ~Fl~~R-LLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNi-t~~~~--  171 (446)
T PF10165_consen   96 EFLDSR-LLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNI-TLHYP--  171 (446)
T ss_pred             HHHHHH-HHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHh-hhccC--
Confidence            788888 888887655444 4556666788887776531        1         123345667788888 44321  


Q ss_pred             hhhhhhccchHHHHHHHHHcc--------C--CchhHHHHHHHHHHhcCC-Cch-------hH----HHHhcCcHHHHHH
Q 015728          224 ELCCKLGKDDRLLREIISLVH--------H--NSEASDAGVRAFSALCST-ETN-------RK----TLVQEGAINGLIA  281 (401)
Q Consensus       224 ~~~~~i~~~~g~i~~Lv~lL~--------~--~~~~~~~a~~aL~~Ls~~-~~n-------~~----~iv~~G~v~~Lv~  281 (401)
                      ....  ....+.++.|+.++.        .  ..+...++..+|.|+-.. .+.       ..    .-.....|..|+.
T Consensus       172 ~~~~--~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~  249 (446)
T PF10165_consen  172 KSVP--EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLD  249 (446)
T ss_pred             cccc--hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHH
Confidence            1111  011244555555541        1  134788888999888311 111       11    1123447888888


Q ss_pred             HHHhhc--cc---cchHHHHHHHHHHHHhCCH-hhHHHHHh---------------CCCcHHHHHHHHHhcCChhHHHHH
Q 015728          282 YISNAL--TR---ERSLAAIAMARIEQLLAIE-NSKDALIN---------------NPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       282 lL~~~~--~~---~~~~~~~a~~~L~~La~~~-~~~~~~~~---------------~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                      +|...-  ..   -.+...--+.+|..++... ..|..+..               ....-..|+++|. +..+..++.+
T Consensus       250 ~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt-~~~~~~k~~v  328 (446)
T PF10165_consen  250 FLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT-SPDPQLKDAV  328 (446)
T ss_pred             HHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC-CCCchHHHHH
Confidence            886420  11   1245556677788888653 33333321               2235667888544 4447899999


Q ss_pred             HHHHHHHhcCCH
Q 015728          341 INSLMMICCDSL  352 (401)
Q Consensus       341 ~~~L~~l~~~~~  352 (401)
                      ...|+.||..+.
T Consensus       329 aellf~Lc~~d~  340 (446)
T PF10165_consen  329 AELLFVLCKEDA  340 (446)
T ss_pred             HHHHHHHHhhhH
Confidence            999999997653

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=6.4e-05  Score=67.30  Aligned_cols=49  Identities=20%  Similarity=0.284  Sum_probs=41.7

Q ss_pred             CCcccccccccccCCceEc-CccccccHHhHHHHHHc-CCCCCCCCcccCC
Q 015728           10 PHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPVTMQTLH   58 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~~   58 (401)
                      ..+-.||+|++.-..|.+. +|||.||..|+...+.. ..++||.|+.+..
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            4578999999999999986 59999999999886653 4689999988764

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=3e-05  Score=70.29  Aligned_cols=48  Identities=19%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             ccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728           13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      -.|+||...+.-|+.+.|+|.||.-||+-....+..+|++||.++.+.
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            469999999999999999999999999988776788899999999764

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.54  E-value=0.016  Score=56.42  Aligned_cols=254  Identities=11%  Similarity=0.079  Sum_probs=165.4

Q ss_pred             HHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH
Q 015728          116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV  195 (401)
Q Consensus       116 ~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~  195 (401)
                      +..|..+.+.++.-|..+.-.-..+.+..++-+++        .+++-.+.. +++.+..+.+..+ .+.+.+.=-.++.
T Consensus         4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~--------~~vraa~yR-ilRy~i~d~~~l~-~~~~l~id~~ii~   73 (371)
T PF14664_consen    4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS--------KEVRAAGYR-ILRYLISDEESLQ-ILLKLHIDIFIIR   73 (371)
T ss_pred             HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc--------HHHHHHHHH-HHHHHHcCHHHHH-HHHHcCCchhhHh
Confidence            45677777888877777765556666666565554        348888888 9988776554444 4435553334455


Q ss_pred             HhhcC--CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHh
Q 015728          196 LFEHG--SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQ  272 (401)
Q Consensus       196 ~L~~~--~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~  272 (401)
                      -|...  +...|++|...+..+.....    ....+  ..|++..+|.+. +.+...+..+...|..|+..+  ...+++
T Consensus        74 SL~~~~~~~~ER~QALkliR~~l~~~~----~~~~~--~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~  145 (371)
T PF14664_consen   74 SLDRDNKNDVEREQALKLIRAFLEIKK----GPKEI--PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAE  145 (371)
T ss_pred             hhcccCCChHHHHHHHHHHHHHHHhcC----CcccC--CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHH
Confidence            56543  45678899999988843321    12233  248999999999 456679999999999999532  345678


Q ss_pred             cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc------CCh--hHHHHHHHHH
Q 015728          273 EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV------SDH--EGSENAINSL  344 (401)
Q Consensus       273 ~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~------~~~--~~~~~a~~~L  344 (401)
                      +|++..|++.+.   ++..+..+..+.++.++-..+..|.-+. ..--+..++.-....      ++.  .--..+..++
T Consensus       146 ~gG~~~L~~~l~---d~~~~~~~~l~~~lL~lLd~p~tR~yl~-~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai  221 (371)
T PF14664_consen  146 CGGIRVLLRALI---DGSFSISESLLDTLLYLLDSPRTRKYLR-PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAI  221 (371)
T ss_pred             cCCHHHHHHHHH---hccHhHHHHHHHHHHHHhCCcchhhhhc-CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHH
Confidence            999999999998   4444588899999999999999998774 333355555533222      111  1223344444


Q ss_pred             HHHhcC-CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          345 MMICCD-SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       345 ~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ..+-+. ++-..--+-+..++..|+..|+.+ ++..|+....++.-+-+
T Consensus       222 ~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllr  269 (371)
T PF14664_consen  222 STLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLR  269 (371)
T ss_pred             HHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHC
Confidence            443222 110000011124688899999888 88899988888776644

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.50  E-value=0.00031  Score=53.20  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=68.5

Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH
Q 015728          276 INGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR  355 (401)
Q Consensus       276 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  355 (401)
                      ||.|++.|.+  +++..++..++.+|..+-           +..+++.|++ ++++.++.++..|+.+|..+-       
T Consensus         1 i~~L~~~l~~--~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    1 IPALLQLLQN--DPDPQVRAEAARALGELG-----------DPEAIPALIE-LLKDEDPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHHT--SSSHHHHHHHHHHHHCCT-----------HHHHHHHHHH-HHTSSSHHHHHHHHHHHHCCH-------
T ss_pred             CHHHHHHHhc--CCCHHHHHHHHHHHHHcC-----------CHhHHHHHHH-HHcCCCHHHHHHHHHHHHHhC-------
Confidence            6899999954  788899999998888441           3356889999 568889999999999998762       


Q ss_pred             HHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728          356 EEAICAGVLTQLLLLLQSQCSNRTKTKARMLL  387 (401)
Q Consensus       356 ~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L  387 (401)
                          ...+++.|..+++++.+..+|..|...|
T Consensus        60 ----~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 ----DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             ----HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence                2337889999998875777899888876

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.50  E-value=0.0002  Score=45.71  Aligned_cols=40  Identities=13%  Similarity=0.351  Sum_probs=35.9

Q ss_pred             CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      ++++..+++.|++++|+++|.   +++.+++..++++|.+|+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~---~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLK---SEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHcC
Confidence            457888999999999999999   6788999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=4.4e-05  Score=78.11  Aligned_cols=45  Identities=27%  Similarity=0.525  Sum_probs=40.8

Q ss_pred             cccccccccccCC-----ceEcCccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728           12 LFRCPISLDLFTD-----PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTL   57 (401)
Q Consensus        12 ~~~C~iC~~~~~~-----Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~   57 (401)
                      +-.|+||.+.+..     |..++|||.|+..|+..|++ ...+||.||..+
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~e-r~qtCP~CR~~~  340 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFE-RQQTCPTCRTVL  340 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHH-HhCcCCcchhhh
Confidence            6789999999998     78899999999999999999 578899999844

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.47  E-value=0.00012  Score=54.31  Aligned_cols=44  Identities=25%  Similarity=0.452  Sum_probs=32.2

Q ss_pred             ccccccccCC-ceEc-CccccccHHhHHHHHHc--CCCCCCCCcccCC
Q 015728           15 CPISLDLFTD-PVTL-CTGQTYDRSSIEKWLAA--GNLTCPVTMQTLH   58 (401)
Q Consensus        15 C~iC~~~~~~-Pv~~-~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~   58 (401)
                      ||.|...-.+ |+.. .|+|.|...||.+|+.+  ....||.||++..
T Consensus        35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            4444433223 6655 69999999999999996  3578999998764

>TIGR02270 conserved hypothetical protein

Probab=97.46  E-value=0.017  Score=56.79  Aligned_cols=156  Identities=16%  Similarity=0.122  Sum_probs=100.9

Q ss_pred             hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhH
Q 015728          190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRK  268 (401)
Q Consensus       190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~  268 (401)
                      +..|+..|.+.+..++..++.+|..+ -.              .+..+.|+.+|+ .++.++..++.++..         
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i-~~--------------~~a~~~L~~~L~~~~p~vR~aal~al~~---------  143 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWL-GG--------------RQAEPWLEPLLAASEPPGRAIGLAALGA---------  143 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcC-Cc--------------hHHHHHHHHHhcCCChHHHHHHHHHHHh---------
Confidence            77888888888888888888888666 21              256677888884 444566666655544         


Q ss_pred             HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                        ......++++.+|.   +.+..++..|+.+|..+.           ....++.|.. .+.+.++.++..|+.+|..+-
T Consensus       144 --r~~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~-----------~~~a~~~L~~-al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       144 --HRHDPGPALEAALT---HEDALVRAAALRALGELP-----------RRLSESTLRL-YLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             --hccChHHHHHHHhc---CCCHHHHHHHHHHHHhhc-----------cccchHHHHH-HHcCCCHHHHHHHHHHHHHcC
Confidence              22335677888887   677888888888888763           4456667776 466777778887877775542


Q ss_pred             cCCHHHH------------------HHHHHc----CcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          349 CDSLQAR------------------EEAICA----GVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       349 ~~~~~~~------------------~~~~~~----g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      .  +...                  ..+...    .+++.|..+++++   .+++.+..+|..+.
T Consensus       207 ~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~---~vr~~a~~AlG~lg  266 (410)
T TIGR02270       207 S--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA---ATRREALRAVGLVG  266 (410)
T ss_pred             C--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh---hhHHHHHHHHHHcC
Confidence            1  1111                  111111    3556667776654   37888888776654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.053  Score=57.66  Aligned_cols=249  Identities=15%  Similarity=0.125  Sum_probs=163.0

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE  186 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~  186 (401)
                      +.+..|.-|+..+..+...-+ .-.-+++.|.+..|+.+|-|-.         ..++.++. +|..|+....-.++.+ +
T Consensus      1784 ~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL~lLHS~P---------S~R~~vL~-vLYAL~S~~~i~keA~-~ 1851 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATANKE-CVTDLATCNVLTTLLTLLHSQP---------SMRARVLD-VLYALSSNGQIGKEAL-E 1851 (2235)
T ss_pred             CCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHHHHHhcCh---------HHHHHHHH-HHHHHhcCcHHHHHHH-h
Confidence            457788889998888776544 6777888999999999997753         36888888 8888886655445555 6


Q ss_pred             CCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhccc--c----------------------------------------hh
Q 015728          187 ESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSH--E----------------------------------------TK  223 (401)
Q Consensus       187 ~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~--~----------------------------------------~~  223 (401)
                      .|++.-+.+++- +.+++.|..+|..+.++++..-  +                                        |+
T Consensus      1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~ 1931 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNE 1931 (2235)
T ss_pred             cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCH
Confidence            788877777764 4467788888989988833211  0                                        00


Q ss_pred             hhhhhh--------------------------------------------------cc-----------chHHHHHHHHH
Q 015728          224 ELCCKL--------------------------------------------------GK-----------DDRLLREIISL  242 (401)
Q Consensus       224 ~~~~~i--------------------------------------------------~~-----------~~g~i~~Lv~l  242 (401)
                      ..+..+                                                  ..           ..|.+..+..+
T Consensus      1932 ~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lel 2011 (2235)
T KOG1789|consen 1932 VTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLEL 2011 (2235)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHH
Confidence            001000                                                  00           00122222333


Q ss_pred             c-cCCc--hhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC
Q 015728          243 V-HHNS--EASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP  318 (401)
Q Consensus       243 L-~~~~--~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~  318 (401)
                      + ..++  .....-..|+..|-+ .+.-..++-..|.+|.++..+.   ..+...-..|+.+|..|+.+.--..++. ..
T Consensus      2012 m~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~---~~n~s~P~SaiRVlH~Lsen~~C~~AMA-~l 2087 (2235)
T KOG1789|consen 2012 MSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMC---LQNTSAPRSAIRVLHELSENQFCCDAMA-QL 2087 (2235)
T ss_pred             hcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHH---hcCCcCcHHHHHHHHHHhhccHHHHHHh-cc
Confidence            3 1222  122233334444443 4445666667899999999987   3444555789999999999887777775 66


Q ss_pred             CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhc
Q 015728          319 NGVYALVKMVFRVSDHEGSENAINSLMMICCD-SLQAREEAICAGVLTQLLLLLQS  373 (401)
Q Consensus       319 g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~  373 (401)
                      .++..++..|.+-.+  ...-|+.+|-.+... .++....+++.|.|+.|+.||..
T Consensus      2088 ~~i~~~m~~mkK~~~--~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2088 PCIDGIMKSMKKQPS--LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             ccchhhHHHHHhcch--HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence            777778886655433  334677777666543 23677789999999999999954

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.45  E-value=0.12  Score=49.80  Aligned_cols=224  Identities=13%  Similarity=0.136  Sum_probs=154.2

Q ss_pred             ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc------cCCchHHHHHHhhcCCHHHHHHHHHH
Q 015728          138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN------EESKMESFIVLFEHGSCSIKKRLCHL  211 (401)
Q Consensus       138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~------~~g~i~~Lv~~L~~~~~~~~~~aa~~  211 (401)
                      .+.+++.+++..+.       .+..+.++. ++.-+-..+.....++.      ..-.-++.+.+|..++.-..+.++++
T Consensus        66 ~v~~fi~LlS~~~k-------dd~v~yvL~-li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~I  137 (442)
T KOG2759|consen   66 YVKTFINLLSHIDK-------DDTVQYVLT-LIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRI  137 (442)
T ss_pred             HHHHHHHHhchhhh-------HHHHHHHHH-HHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHH
Confidence            56778888765543       345666666 55544433322222221      11236778889989988888888999


Q ss_pred             HHHHHhcccchhhhhhhhcc-chH-HHHHHHHHc-c-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhc
Q 015728          212 VEVIISSSHETKELCCKLGK-DDR-LLREIISLV-H-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNAL  287 (401)
Q Consensus       212 L~~l~s~~~~~~~~~~~i~~-~~g-~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~  287 (401)
                      +..+ +...     ...+.. ... ....|-..+ + .+..-...++++|-.+...++.|..++.+.++..++..+.+. 
T Consensus       138 ls~l-a~~g-----~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~-  210 (442)
T KOG2759|consen  138 LSKL-ACFG-----NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILAST-  210 (442)
T ss_pred             HHHH-HHhc-----cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhcc-
Confidence            9998 5543     111111 001 223444455 3 345678889999999999999999999999999999999421 


Q ss_pred             cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH------HHHHHHHHc
Q 015728          288 TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL------QAREEAICA  361 (401)
Q Consensus       288 ~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~  361 (401)
                      ..+-.++=..+-.++.|.-.+...+.+ ...+.|+.|++.+..+..+++.+..+.++.|++...+      +....|+..
T Consensus       211 ~~~~QlQYqsifciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~  289 (442)
T KOG2759|consen  211 KCGFQLQYQSIFCIWLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLC  289 (442)
T ss_pred             CcchhHHHHHHHHHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhc
Confidence            556788888999999999888888777 5889999999944333456788889999999987763      445677888


Q ss_pred             CcHHHHHHHhhcCCCH
Q 015728          362 GVLTQLLLLLQSQCSN  377 (401)
Q Consensus       362 g~v~~L~~ll~~~~~~  377 (401)
                      ++.+.+-.|-+.+=++
T Consensus       290 ~v~k~l~~L~~rkysD  305 (442)
T KOG2759|consen  290 KVLKTLQSLEERKYSD  305 (442)
T ss_pred             CchHHHHHHHhcCCCc
Confidence            8777776665544333

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.43  E-value=0.0019  Score=62.43  Aligned_cols=173  Identities=12%  Similarity=0.149  Sum_probs=125.4

Q ss_pred             cCCchHHHHHHhhcCCHHH--HHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhc
Q 015728          186 EESKMESFIVLFEHGSCSI--KKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALC  261 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~--~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls  261 (401)
                      ..|++..|++++..++.+.  +..|+.+|..+ -..    +|+..++.. | +..++.+-  +...+..+..+..|-++.
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~-~~a----eN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQI-LVA----ENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHH-Hhh----hhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            5688999999999987754  88999999998 332    667777654 3 23333333  445678999999999999


Q ss_pred             CC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC--CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHH
Q 015728          262 ST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA--IENSKDALINNPNGVYALVKMVFRVSDHEGSE  338 (401)
Q Consensus       262 ~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~--~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~  338 (401)
                      .+ ++....++++|++..++--.+   ..++.+...++-+|.|.+-  +.+.+..++ +..+-..|.- +.-..+.-.+-
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~r---Rt~P~lLRH~ALAL~N~~L~~~~a~qrrmv-eKr~~EWLF~-LA~skDel~R~  325 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCR---RTDPALLRHCALALGNCALHGGQAVQRRMV-EKRAAEWLFP-LAFSKDELLRL  325 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecc---cCCHHHHHHHHHHhhhhhhhchhHHHHHHH-Hhhhhhhhhh-hhcchHHHHHH
Confidence            64 457889999999999887777   4678889999999998885  456777776 5566677776 44444656777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh
Q 015728          339 NAINSLMMICCDSLQAREEAICAGVLTQLLLLL  371 (401)
Q Consensus       339 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll  371 (401)
                      +|.-+.+-|+.+ .+.-.++.++|.+...=.++
T Consensus       326 ~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlv  357 (832)
T KOG3678|consen  326 HACLAVAVLATN-KEVEREVRKSGTLALVEPLV  357 (832)
T ss_pred             HHHHHHhhhhhh-hhhhHHHhhccchhhhhhhh
Confidence            888888888876 45555666776654333333

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.36  E-value=0.015  Score=55.95  Aligned_cols=183  Identities=16%  Similarity=0.189  Sum_probs=122.0

Q ss_pred             CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 015728          137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVII  216 (401)
Q Consensus       137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~  216 (401)
                      -.++.++.++.+.+.        .++..|.. .+..+           .....++.+..++.+.+..+|..|+.+|..+ 
T Consensus        43 ~~~~~~~~~l~~~~~--------~vr~~aa~-~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-  101 (335)
T COG1413          43 EAADELLKLLEDEDL--------LVRLSAAV-ALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGEL-  101 (335)
T ss_pred             hhHHHHHHHHcCCCH--------HHHHHHHH-HHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-
Confidence            468888999988753        37777777 53321           1234689999999999999999999988777 


Q ss_pred             hcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccc---
Q 015728          217 SSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRER---  291 (401)
Q Consensus       217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~---  291 (401)
                      -.              ...+++|+.+|.  .+..++..++++|..+-.          ..++.+++..+.   +...   
T Consensus       102 ~~--------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~---~~~~~~a  154 (335)
T COG1413         102 GD--------------PEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQ---DEDSGSA  154 (335)
T ss_pred             CC--------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhc---cchhhhh
Confidence            21              246799999995  345599999999887754          223888888888   3331   


Q ss_pred             ---------hHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015728          292 ---------SLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAG  362 (401)
Q Consensus       292 ---------~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g  362 (401)
                               .++..+...|..+           .+...++.+.. .++.....++..|+.+|..+...+         ..
T Consensus       155 ~~~~~~~~~~~r~~a~~~l~~~-----------~~~~~~~~l~~-~l~~~~~~vr~~Aa~aL~~~~~~~---------~~  213 (335)
T COG1413         155 AAALDAALLDVRAAAAEALGEL-----------GDPEAIPLLIE-LLEDEDADVRRAAASALGQLGSEN---------VE  213 (335)
T ss_pred             hhhccchHHHHHHHHHHHHHHc-----------CChhhhHHHHH-HHhCchHHHHHHHHHHHHHhhcch---------hh
Confidence                     1233333333322           46678888888 466666688999999998887664         33


Q ss_pred             cHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728          363 VLTQLLLLLQSQCSNRTKTKARMLLKL  389 (401)
Q Consensus       363 ~v~~L~~ll~~~~~~~~~~~A~~~L~~  389 (401)
                      +.+.+...++.+ +..+|..+...|..
T Consensus       214 ~~~~l~~~~~~~-~~~vr~~~~~~l~~  239 (335)
T COG1413         214 AADLLVKALSDE-SLEVRKAALLALGE  239 (335)
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHhcc
Confidence            334455555444 55666555555543

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.30  E-value=0.00013  Score=70.85  Aligned_cols=51  Identities=22%  Similarity=0.342  Sum_probs=44.0

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHc----CCCCCCCCcccCCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHDP   60 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~~   60 (401)
                      ..+..|.+|.+...+|+...|.|.||+.|+.+|...    ...+||.|...++..
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            356789999999999999999999999999998774    358899998877654

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00016  Score=65.57  Aligned_cols=48  Identities=21%  Similarity=0.447  Sum_probs=38.9

Q ss_pred             cccccccccccCC--c-eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           12 LFRCPISLDLFTD--P-VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        12 ~~~C~iC~~~~~~--P-v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ...|.||++-|.+  . +.+||.|.|...|+.+|...-...||+|+..+.+
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            3579999997753  2 3479999999999999998556679999987754

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.20  E-value=0.00066  Score=43.23  Aligned_cols=39  Identities=21%  Similarity=0.223  Sum_probs=33.8

Q ss_pred             chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728          127 PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus       127 ~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      +.++..+++.|+++.|+.+|.+++        .++++.+++ +|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~--------~~i~~~a~~-aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSED--------EEVVKEAAW-ALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCC--------HHHHHHHHH-HHHHHc
Confidence            348889999999999999998665        459999999 999886

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.16  Score=54.24  Aligned_cols=263  Identities=16%  Similarity=0.161  Sum_probs=155.9

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHh----cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQ----LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL  184 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~----~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v  184 (401)
                      .+....++..|+|+.+.+|+-...+..    .|-.+.+..+|.+...       ++++.-|+. ++..++.. .++..-+
T Consensus      1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~-------~~iq~LaL~-Vi~~~Tan-~~Cv~~~ 1809 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKH-------PKLQILALQ-VILLATAN-KECVTDL 1809 (2235)
T ss_pred             HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCC-------chHHHHHHH-HHHHHhcc-cHHHHHH
Confidence            345677999999999999964444332    5888999999987654       569999999 88877754 4555555


Q ss_pred             ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhcC
Q 015728          185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALCS  262 (401)
Q Consensus       185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls~  262 (401)
                      ++.|.+..|+.+|.+ -+..|+.+..+|..| ++...  -.+..+ +. |++.-+..++  ....+.+-+|+..|..|..
T Consensus      1810 a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL-~S~~~--i~keA~-~h-g~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHS-QPSMRARVLDVLYAL-SSNGQ--IGKEAL-EH-GGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             HhhhHHHHHHHHHhc-ChHHHHHHHHHHHHH-hcCcH--HHHHHH-hc-CchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            678888888888854 577899999999999 65541  333333 33 4455555444  2233344444444333321


Q ss_pred             CC----------------------------------------c-------------------------------------
Q 015728          263 TE----------------------------------------T-------------------------------------  265 (401)
Q Consensus       263 ~~----------------------------------------~-------------------------------------  265 (401)
                      ++                                        +                                     
T Consensus      1884 dkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~P 1963 (2235)
T KOG1789|consen 1884 DKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTP 1963 (2235)
T ss_pred             ccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence            11                                        0                                     


Q ss_pred             -------------------hhHHHHhc------------CcHHHHHHHHHhhccccchHHHH-HHHHHHHHhCCHhhHHH
Q 015728          266 -------------------NRKTLVQE------------GAINGLIAYISNALTRERSLAAI-AMARIEQLLAIENSKDA  313 (401)
Q Consensus       266 -------------------n~~~iv~~------------G~v~~Lv~lL~~~~~~~~~~~~~-a~~~L~~La~~~~~~~~  313 (401)
                                         +|.-+++-            |.++.+++++... .......+. ..+..+.+..++.-..+
T Consensus      1964 EqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~-~peqh~l~lLt~A~V~L~r~hP~LADq 2042 (2235)
T KOG1789|consen 1964 EQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRP-TPEQHELDLLTKAFVELVRHHPNLADQ 2042 (2235)
T ss_pred             hhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCC-CcccchhHHHHHHHHHHHHhCcchhhh
Confidence                               00000000            0111111122100 011111111 22223333345555566


Q ss_pred             HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      + ..-|.+|.++..|- ..+...-..|+++|..|+.+ .-+.++|..-..+..++..|....+-  -.-|..+|+.+-+
T Consensus      2043 i-p~LGylPK~~~Am~-~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~~~--~GLA~EalkR~~~ 2116 (2235)
T KOG1789|consen 2043 L-PSLGYLPKFCTAMC-LQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQPSL--MGLAAEALKRLMK 2116 (2235)
T ss_pred             C-CCccchHHHHHHHH-hcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcchH--HHHHHHHHHHHHH
Confidence            6 48899999999754 33335678899999999976 56777888888888888887654222  2256666655544

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.11  Score=50.40  Aligned_cols=244  Identities=13%  Similarity=0.177  Sum_probs=156.6

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCc-----h----hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESP-----P----ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVE  163 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-----~----~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~  163 (401)
                      -.+.++.++|.-.+  .+.-...+.-|+.|...+-     +    --..+++.++++.||+-++.-+..  ..+...-..
T Consensus       125 n~V~slL~LLgHeN--tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEs--vkeea~gv~  200 (536)
T KOG2734|consen  125 NAVQSLLELLGHEN--TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDES--VKEEADGVH  200 (536)
T ss_pred             ccHHHHHHHhcCCC--chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhc--chhhhhhhH
Confidence            34555666665333  3466788888888885532     2    234566789999999988644432  112233445


Q ss_pred             HHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH
Q 015728          164 ESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS  241 (401)
Q Consensus       164 ~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~  241 (401)
                      .++. ++-|+..-++..-..+++.|.+.-|+..+..  .-..-+..|..+|.-+....+   +++...+.-.| |-.|+.
T Consensus       201 ~~L~-vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~---e~~~~~~~l~G-iD~lL~  275 (536)
T KOG2734|consen  201 NTLA-VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD---ENRKLLGPLDG-IDVLLR  275 (536)
T ss_pred             HHHH-HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc---hhhhhhcCccc-HHHHHh
Confidence            5566 6666664444443344466766665554432  234566778888877734333   68888887644 566666


Q ss_pred             Hc----cCC------chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh--
Q 015728          242 LV----HHN------SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN--  309 (401)
Q Consensus       242 lL----~~~------~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~--  309 (401)
                      -+    ..+      .+...+--.+|+.+-..+.||.+++...++....-+++   . ....+..++.+|-+.-.+++  
T Consensus       276 ~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr---~-Kk~sr~SalkvLd~am~g~~gt  351 (536)
T KOG2734|consen  276 QLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR---E-KKVSRGSALKVLDHAMFGPEGT  351 (536)
T ss_pred             hcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH---H-HHHhhhhHHHHHHHHHhCCCch
Confidence            55    222      13677777888888889999999999989887777776   2 34567789999998887655  


Q ss_pred             -hHHHHHhCCCcHHHHHHHHHhc---------CChhHHHHHHHHHHHHhcC
Q 015728          310 -SKDALINNPNGVYALVKMVFRV---------SDHEGSENAINSLMMICCD  350 (401)
Q Consensus       310 -~~~~~~~~~g~i~~Lv~~l~~~---------~~~~~~~~a~~~L~~l~~~  350 (401)
                       +...++ +.+|.....-+.++.         +.....+...++|+++-.+
T Consensus       352 ~~C~kfV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  352 PNCNKFV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             HHHHHHH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence             566775 666666666644422         2334677788888877553

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.09  E-value=0.16  Score=46.05  Aligned_cols=202  Identities=13%  Similarity=0.147  Sum_probs=117.3

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      ..++|.|+..|...+..      +.++.+|.. +|..+-  +         .+.++.+-+..+.+..++++.+..+|..+
T Consensus        66 ~~Av~~l~~vl~desq~------pmvRhEAae-alga~~--~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rl  127 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQE------PMVRHEAAE-ALGAIG--D---------PESLEILTKYIKDPCKEVRETCELAIKRL  127 (289)
T ss_pred             chhhHHHHHHhcccccc------hHHHHHHHH-HHHhhc--c---------hhhHHHHHHHhcCCccccchHHHHHHHHH
Confidence            45788888888777765      677777877 666543  1         12233344444455566777666677776


Q ss_pred             Hhcccchhhhhhhhcc----------------chHHHHHHHHHc-cCCch--hHHHHHHHHHHhcCCCchhHHHHhcCcH
Q 015728          216 ISSSHETKELCCKLGK----------------DDRLLREIISLV-HHNSE--ASDAGVRAFSALCSTETNRKTLVQEGAI  276 (401)
Q Consensus       216 ~s~~~~~~~~~~~i~~----------------~~g~i~~Lv~lL-~~~~~--~~~~a~~aL~~Ls~~~~n~~~iv~~G~v  276 (401)
                       ...+       .+..                ..+-+..|-..| +...+  -+..|.-.|+|+-.          ..+|
T Consensus       128 -e~~~-------~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI  189 (289)
T KOG0567|consen  128 -EWKD-------IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAI  189 (289)
T ss_pred             -HHhh-------ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHH
Confidence             3221       1111                001122233222 21111  11222222222211          1245


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc-CChhHHHHHHHHHHHHhcCCHHHH
Q 015728          277 NGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV-SDHEGSENAINSLMMICCDSLQAR  355 (401)
Q Consensus       277 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~  355 (401)
                      ..|++=|.   .++.-.+..++-++.+|           ..+-+||.|.+.|... ..+.++.-|+.+|..++.  +++.
T Consensus       190 ~al~~~l~---~~SalfrhEvAfVfGQl-----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~~~  253 (289)
T KOG0567|consen  190 NALIDGLA---DDSALFRHEVAFVFGQL-----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--EDCV  253 (289)
T ss_pred             HHHHHhcc---cchHHHHHHHHHHHhhc-----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HHHH
Confidence            55555555   44556677777777766           4667899999965544 356788889999999974  4554


Q ss_pred             HHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728          356 EEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK  399 (401)
Q Consensus       356 ~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~  399 (401)
                               +.|...+.++ .+.+++.+.-+|.++....+.++.
T Consensus       254 ---------~vL~e~~~D~-~~vv~esc~valdm~eyens~~~e  287 (289)
T KOG0567|consen  254 ---------EVLKEYLGDE-ERVVRESCEVALDMLEYENSKEFE  287 (289)
T ss_pred             ---------HHHHHHcCCc-HHHHHHHHHHHHHHHHHhcccccc
Confidence                     4566777666 888999999998887664444443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.09  E-value=0.038  Score=55.60  Aligned_cols=188  Identities=13%  Similarity=0.092  Sum_probs=112.2

Q ss_pred             hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhH
Q 015728          190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRK  268 (401)
Q Consensus       190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~  268 (401)
                      +|+++.-+.......+..++..|..+ +...   ...-.... ..+||.|...| +..+++++++-.+|.+++..-+|..
T Consensus       256 lpsll~~l~~~kWrtK~aslellg~m-~~~a---p~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d  330 (569)
T KOG1242|consen  256 LPSLLGSLLEAKWRTKMASLELLGAM-ADCA---PKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD  330 (569)
T ss_pred             hhhhHHHHHHHhhhhHHHHHHHHHHH-HHhc---hHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH
Confidence            45555544444668888999999888 5432   11111112 36888888888 6678899999999999998777766


Q ss_pred             HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHH---hCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHH
Q 015728          269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQL---LAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLM  345 (401)
Q Consensus       269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L---a~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~  345 (401)
                       | + -.+|.|++-+.   +++..+ ..++..|..-   +.-.+--..+     .+|.|-+. ++..+...++.++.+.+
T Consensus       331 -I-~-~~ip~Lld~l~---dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~-l~eRst~~kr~t~~Iid  397 (569)
T KOG1242|consen  331 -I-Q-KIIPTLLDALA---DPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRG-LAERSTSIKRKTAIIID  397 (569)
T ss_pred             -H-H-HHHHHHHHHhc---Ccccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHH-HhhccchhhhhHHHHHH
Confidence             2 2 16788888887   344222 2233322211   1111111111     13444443 33344467899999999


Q ss_pred             HHhcCCHHH-HHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          346 MICCDSLQA-REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       346 ~l~~~~~~~-~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      |+|+.-++- .-.-.---.+|-|-..+... .|++|.-|+.+|.-+.+..+|
T Consensus       398 Nm~~LveDp~~lapfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  398 NMCKLVEDPKDLAPFLPSLLPGLKENLDDA-VPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             HHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHh
Confidence            999875221 11112233445555555555 899999999999555553544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.083  Score=53.21  Aligned_cols=259  Identities=13%  Similarity=0.061  Sum_probs=145.8

Q ss_pred             hhhHHHHHHhhhhh-hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHH-HHHhccCCcccchhhhHHHHHHHHHHH
Q 015728           92 IDSLSTLKHSLQSH-EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLL-LKQLFGKAESKFSQVYVQFVEESLSCV  169 (401)
Q Consensus        92 ~~~~~~l~~~l~~~-~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~L-v~lL~s~~~~~~~~~~~~~~~~a~~~~  169 (401)
                      +..+..+-..+.+. +.....|..|....+.+.+.-+...-..    .+|.+ -.++...+.         -...++. +
T Consensus       212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWr---------tK~asle-l  277 (569)
T KOG1242|consen  212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWR---------TKMASLE-L  277 (569)
T ss_pred             chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhh---------hHHHHHH-H
Confidence            34455554445433 4567778888888888876655432222    13333 333333222         3456666 7


Q ss_pred             HHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchh
Q 015728          170 QKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEA  249 (401)
Q Consensus       170 L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  249 (401)
                      +..+....+...... .+..||.+.+.|-...+++|..+..+|.++ ....   +|.. |   .-.+|.|+.-+.+...-
T Consensus       278 lg~m~~~ap~qLs~~-lp~iiP~lsevl~DT~~evr~a~~~~l~~~-~svi---dN~d-I---~~~ip~Lld~l~dp~~~  348 (569)
T KOG1242|consen  278 LGAMADCAPKQLSLC-LPDLIPVLSEVLWDTKPEVRKAGIETLLKF-GSVI---DNPD-I---QKIIPTLLDALADPSCY  348 (569)
T ss_pred             HHHHHHhchHHHHHH-HhHhhHHHHHHHccCCHHHHHHHHHHHHHH-HHhh---ccHH-H---HHHHHHHHHHhcCcccc
Confidence            777765544444333 467899999999989999999999999999 5444   3344 2   24578888887433222


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhC-CCcHHHHHHH
Q 015728          250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINN-PNGVYALVKM  327 (401)
Q Consensus       250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~-~g~i~~Lv~~  327 (401)
                      ...+...|..-+...     .|++-.+..++.+|... ...+...+..++.+..|++.--++...+... ...+|.|=+ 
T Consensus       349 ~~e~~~~L~~ttFV~-----~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~-  422 (569)
T KOG1242|consen  349 TPECLDSLGATTFVA-----EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKE-  422 (569)
T ss_pred             hHHHHHhhcceeeee-----eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHH-
Confidence            334444444333211     12334444555555431 1345567788888999998755544444311 122333333 


Q ss_pred             HHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHH
Q 015728          328 VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKA  383 (401)
Q Consensus       328 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A  383 (401)
                      .+.+..|+++..+.++|..+-...++..    ..+.+|.+.+.+.+..+..-+.-+
T Consensus       423 ~~~d~~PEvR~vaarAL~~l~e~~g~~~----f~d~~p~l~e~~~~~k~~~~~~g~  474 (569)
T KOG1242|consen  423 NLDDAVPEVRAVAARALGALLERLGEVS----FDDLIPELSETLTSEKSLVDRSGA  474 (569)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHhhc----ccccccHHHHhhccchhhhhhHHH
Confidence            2333468899999999977754322211    145555555555444333333333

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.00073  Score=59.99  Aligned_cols=76  Identities=30%  Similarity=0.468  Sum_probs=68.6

Q ss_pred             CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG   81 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~   81 (401)
                      ..++|+.++|.|..++|++||..|.|-+|.+.-|.+.+..-...=|+.+.+++...+.+|..+...|..|+..|+-
T Consensus       205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w  280 (284)
T KOG4642|consen  205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW  280 (284)
T ss_pred             cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence            4567889999999999999999999999999999999887455689999999999999999999999999998853

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.00  E-value=0.00031  Score=67.13  Aligned_cols=50  Identities=22%  Similarity=0.505  Sum_probs=40.4

Q ss_pred             CCCCCCcccccccccccCCce----EcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728            6 QMTIPHLFRCPISLDLFTDPV----TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv----~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      +..+.+..+||+|++-|-+-+    ++.|.|+|-..|+..|+.   .+||+||....
T Consensus       169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            344556779999999998776    357999999999999976   46999987655

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.095  Score=53.98  Aligned_cols=269  Identities=10%  Similarity=0.081  Sum_probs=172.4

Q ss_pred             hhhhcChHHHHHHHHHHHHHHhcC------chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC
Q 015728          103 QSHEATLETKLQIVQKIHVVLRES------PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG  176 (401)
Q Consensus       103 ~~~~~~~~~~~~a~~~L~~l~~~~------~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~  176 (401)
                      +..+++...|+.|+..|.+-....      +..|..|.     ........+++        .+++..|..|+...++..
T Consensus       182 rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iM-----qvvcEatq~~d--------~~i~~aa~~ClvkIm~Ly  248 (859)
T KOG1241|consen  182 RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIM-----QVVCEATQSPD--------EEIQVAAFQCLVKIMSLY  248 (859)
T ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceee-----eeeeecccCCc--------HHHHHHHHHHHHHHHHHH
Confidence            344567889999999999887442      23344442     23333334444        569999999888888766


Q ss_pred             chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchh----------hhhh------hhccchHHHHHHH
Q 015728          177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETK----------ELCC------KLGKDDRLLREII  240 (401)
Q Consensus       177 ~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~----------~~~~------~i~~~~g~i~~Lv  240 (401)
                      .+....-+ +.......+..+++.++++...+...=.++ +.- +.|          .+..      .-....+++|.|+
T Consensus       249 Y~~m~~yM-~~alfaitl~amks~~deValQaiEFWsti-ceE-EiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll  325 (859)
T KOG1241|consen  249 YEFMEPYM-EQALFAITLAAMKSDNDEVALQAIEFWSTI-CEE-EIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLL  325 (859)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHH
Confidence            55444445 334566667788899999888888776655 321 010          0000      0011236778888


Q ss_pred             HHc-c-C-C---c--hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHh-h
Q 015728          241 SLV-H-H-N---S--EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIEN-S  310 (401)
Q Consensus       241 ~lL-~-~-~---~--~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~-~  310 (401)
                      .+| + + +   .  ...++|..+|.-++.       .+.-.+||+.+..+..+ .+++-.-++.|+.++...-..++ .
T Consensus       326 ~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~  398 (859)
T KOG1241|consen  326 ELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD  398 (859)
T ss_pred             HHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh
Confidence            888 3 1 1   1  255666666665543       33445666777776533 24566667777777776666554 3


Q ss_pred             HHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH-HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728          311 KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ-AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL  389 (401)
Q Consensus       311 ~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~  389 (401)
                      +..-. -.+++|.++.+ ..+++--+++.+.+.|..++..-++ .-.+..-.+.++.|+.=|.+  .|++-.++.|++.-
T Consensus       399 ~Lt~i-V~qalp~ii~l-m~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~  474 (859)
T KOG1241|consen  399 KLTPI-VIQALPSIINL-MSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFIS  474 (859)
T ss_pred             hhhHH-HhhhhHHHHHH-hcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHH
Confidence            33332 45899999995 4566667889999999999987653 23344455666666665533  67999999999999


Q ss_pred             HHHhhHHhh
Q 015728          390 LRSKWAEEL  398 (401)
Q Consensus       390 l~~~~~e~~  398 (401)
                      |.++.+|..
T Consensus       475 Laea~~eA~  483 (859)
T KOG1241|consen  475 LAEAAYEAA  483 (859)
T ss_pred             HHHHHHHhc
Confidence            999888753

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.00063  Score=62.56  Aligned_cols=55  Identities=22%  Similarity=0.374  Sum_probs=44.7

Q ss_pred             CccCCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728            3 EDRQMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus         3 ~~~~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      ++.+...++.-.||+|..-..+|..+. .|..||..|+..+.. ....||+++.+..
T Consensus       291 se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~  346 (357)
T KOG0826|consen  291 SESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS  346 (357)
T ss_pred             cccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence            334444566789999999999998875 799999999999998 6788999877654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=96.96  E-value=0.00029  Score=66.87  Aligned_cols=36  Identities=14%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHc
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA   45 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~   45 (401)
                      +++++||||...|++|++++|+|+.|+.|-.....+
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~   37 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ   37 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence            578999999999999999999999999998766553

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.29  Score=45.89  Aligned_cols=277  Identities=14%  Similarity=0.100  Sum_probs=156.2

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHH--HHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLL--LKQLFGKAESKFSQVYVQFVEESLSCVQ  170 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~L--v~lL~s~~~~~~~~~~~~~~~~a~~~~L  170 (401)
                      +....+...+.  +++.+.-..|...|..++.... .-..|.++.....+  +++--..+        ..++...+. ++
T Consensus       128 eilklildcIg--geddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakcn--------diaRvRVle-LI  195 (524)
T KOG4413|consen  128 EILKLILDCIG--GEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKCN--------DIARVRVLE-LI  195 (524)
T ss_pred             hHHHHHHHHHc--CCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhhh--------hHHHHHHHH-HH
Confidence            44444444443  3456677888888888887654 44455555444333  22221111        224444555 33


Q ss_pred             HhhcCCchhhhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC---C
Q 015728          171 KLLLVGETESLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH---N  246 (401)
Q Consensus       171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~---~  246 (401)
                      ..+..-......-....|.+..|..-|+. .+.-++.++......| ....   ..++.+.. .|.|..+..++.+   +
T Consensus       196 ieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL-aete---HgreflaQ-eglIdlicnIIsGadsd  270 (524)
T KOG4413|consen  196 IEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL-AETE---HGREFLAQ-EGLIDLICNIISGADSD  270 (524)
T ss_pred             HHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH-HHHh---hhhhhcch-hhHHHHHHHHhhCCCCC
Confidence            33332233333344467878777777754 3555677777777778 5443   66777766 4999999888843   3


Q ss_pred             chhHHHHHHHHH----HhcCCCchhHHHHhc--CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC-
Q 015728          247 SEASDAGVRAFS----ALCSTETNRKTLVQE--GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN-  319 (401)
Q Consensus       247 ~~~~~~a~~aL~----~Ls~~~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g-  319 (401)
                      +-.+-.+..-..    +....+-.-.+++++  -+|....+.+.   ..+++.++.|..++..|-++.+|...+. ..| 
T Consensus       271 PfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE---mnDpdaieaAiDalGilGSnteGadlll-kTgp  346 (524)
T KOG4413|consen  271 PFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE---MNDPDAIEAAIDALGILGSNTEGADLLL-KTGP  346 (524)
T ss_pred             cHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh---cCCchHHHHHHHHHHhccCCcchhHHHh-ccCC
Confidence            323333333333    332222222233331  13334444555   5678899999999999999999998886 545 


Q ss_pred             -cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-------------HHHHHHHHc-------CcHHHHHHHhhcCCCHH
Q 015728          320 -GVYALVKMVFRVSDHEGSENAINSLMMICCDSL-------------QAREEAICA-------GVLTQLLLLLQSQCSNR  378 (401)
Q Consensus       320 -~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-------------~~~~~~~~~-------g~v~~L~~ll~~~~~~~  378 (401)
                       ....++-....-+...-++.++.+|.+|+..-.             ..+..+.++       .-...++.+++.+ .++
T Consensus       347 paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpE  425 (524)
T KOG4413|consen  347 PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPE  425 (524)
T ss_pred             hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-Chh
Confidence             234444334444445678889999999875421             122222221       1223345556555 677


Q ss_pred             HHHHHHHHHHHHH
Q 015728          379 TKTKARMLLKLLR  391 (401)
Q Consensus       379 ~~~~A~~~L~~l~  391 (401)
                      .+=.|.+.+.-+.
T Consensus       426 ihcAalktfTAia  438 (524)
T KOG4413|consen  426 IHCAALKTFTAIA  438 (524)
T ss_pred             hHHHHHHHHHHHH
Confidence            6666666555544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.32  Score=50.02  Aligned_cols=172  Identities=16%  Similarity=0.160  Sum_probs=109.5

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      +.++..+-+|+..++.|++.+|.|--.+     .|.+.+++...+.       ..+.-..+. +...|+--.+...+   
T Consensus       192 DpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsN-------NWmLIKiiK-LF~aLtplEPRLgK---  255 (877)
T KOG1059|consen  192 DPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSN-------NWVLIKLLK-LFAALTPLEPRLGK---  255 (877)
T ss_pred             CCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCC-------CeehHHHHH-HHhhccccCchhhh---
Confidence            4578899999999999999999887665     6888888866554       356667777 77777644433222   


Q ss_pred             cCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC
Q 015728          186 EESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCST  263 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~  263 (401)
                        -.++++..++.+... .....+..++... +......+.-..+   .-.++.|-.++ ++|+-++--++.|++.+...
T Consensus       256 --KLieplt~li~sT~AmSLlYECvNTVVa~-s~s~g~~d~~asi---qLCvqKLr~fiedsDqNLKYlgLlam~KI~kt  329 (877)
T KOG1059|consen  256 --KLIEPITELMESTVAMSLLYECVNTVVAV-SMSSGMSDHSASI---QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT  329 (877)
T ss_pred             --hhhhHHHHHHHhhHHHHHHHHHHHHheee-hhccCCCCcHHHH---HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence              247888888876533 3444444443322 2211100112222   12455666666 45566888888888888843


Q ss_pred             CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      +.   ..|++ --..+++.|.   +.++.++-.|+..|.-+..
T Consensus       330 Hp---~~Vqa-~kdlIlrcL~---DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  330 HP---KAVQA-HKDLILRCLD---DKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             CH---HHHHH-hHHHHHHHhc---cCCchhHHHHHHHHHHHhh
Confidence            32   11211 2345788898   7899999999999998864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.83  E-value=0.051  Score=57.73  Aligned_cols=205  Identities=12%  Similarity=0.103  Sum_probs=141.5

Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC--C--chhHHHHHHHHHHhc
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH--N--SEASDAGVRAFSALC  261 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~--~~~~~~a~~aL~~Ls  261 (401)
                      .-|..|.++++|++...+.|..-+.+=..|.+.++   .....+++..| -.-.+..|.+  .  .+.+--|+-+|..+.
T Consensus       510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~---SCQ~dLvKe~g-~~YF~~vL~~~~~~~~EqrtmaAFVLAviv  585 (1387)
T KOG1517|consen  510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDP---SCQADLVKENG-YKYFLQVLDPSQAIPPEQRTMAAFVLAVIV  585 (1387)
T ss_pred             ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCc---hhHHHHHhccC-ceeEEEEecCcCCCCHHHHHHHHHHHHHHH
Confidence            45889999999999999999888877777767775   55555555433 2445555633  2  356667777787887


Q ss_pred             C-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          262 S-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       262 ~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                      . .+-.++...+.+.|..-+++|..  +..+-+++=.+-.|..|=.+.+..+....+.++...|+. +++++-++++-.|
T Consensus       586 ~nf~lGQ~acl~~~li~iCle~lnd--~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~-~LsD~vpEVRaAA  662 (1387)
T KOG1517|consen  586 RNFKLGQKACLNGNLIGICLEHLND--DPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL-LLSDPVPEVRAAA  662 (1387)
T ss_pred             cccchhHHHhccccHHHHHHHHhcC--CccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH-HhcCccHHHHHHH
Confidence            4 55678888999999999999983  234556666666777777776555555568899999999 6788888999999


Q ss_pred             HHHHHHHhcCC----HHH---H--------HHHHHcCcHH----HHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          341 INSLMMICCDS----LQA---R--------EEAICAGVLT----QLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       341 ~~~L~~l~~~~----~~~---~--------~~~~~~g~v~----~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      +.+|..+-.+.    ++.   +        +.+.-+..+.    .++.+++.+ ++-+|...+-.|--+..-+--++
T Consensus       663 VFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~  738 (1387)
T KOG1517|consen  663 VFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHL  738 (1387)
T ss_pred             HHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHh
Confidence            99998887642    111   1        1122233333    667777777 88888777666665554333333

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.82  E-value=0.036  Score=46.70  Aligned_cols=125  Identities=17%  Similarity=0.126  Sum_probs=98.3

Q ss_pred             HHHHhcCcHHHHHHHHHhhcccc-----chHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHH
Q 015728          268 KTLVQEGAINGLIAYISNALTRE-----RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DHEGSENAI  341 (401)
Q Consensus       268 ~~iv~~G~v~~Lv~lL~~~~~~~-----~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~  341 (401)
                      ..++..|++..|++++.+  +..     .+....++.++..|-.++.-.+... ....|...+..+-... +..+.+.|+
T Consensus         5 ~EFI~~~Gl~~L~~~iE~--g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEE--GTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             HHHHhccCHHHHHHHHHc--CCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHH
Confidence            567889999999999995  221     3667778888888888776566665 6677888888443332 567899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          342 NSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       342 ~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      .+|-++..+++..-..+.++=-++.|+..|+.. ++..+.+|.+++.-|-..-++
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCh
Confidence            999999999887777788888899999999997 889999999998876553443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.085  Score=53.60  Aligned_cols=273  Identities=14%  Similarity=0.188  Sum_probs=165.8

Q ss_pred             hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh--hhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHH
Q 015728           92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA--SNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLS  167 (401)
Q Consensus        92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~--r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~  167 (401)
                      ++.++.|-.+|.+.+.  ..+..|...|.+.+.+++..  .....+  .=.||.++.+.++++        ++++.+|+.
T Consensus       127 pelLp~L~~~L~s~d~--n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s--------pkiRs~A~~  196 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDY--NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS--------PKIRSHAVG  196 (885)
T ss_pred             hhHHHHHHHHhcCCcc--cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC--------hhHHHHHHh
Confidence            4777778787765543  36778999999999887752  222211  237899999998886        569999999


Q ss_pred             HHHHhhcCCchhhhhhccc-CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C
Q 015728          168 CVQKLLLVGETESLNLLNE-ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H  245 (401)
Q Consensus       168 ~~L~~l~~~~~~~~~~v~~-~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~  245 (401)
                      |+=..+-....   .+... ...+..+..+-...++++|.+.+.++..|.-...     -+.+-.-.++++.++..-. .
T Consensus       197 cvNq~i~~~~q---al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~-----dkl~phl~~IveyML~~tqd~  268 (885)
T KOG2023|consen  197 CVNQFIIIQTQ---ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP-----DKLVPHLDNIVEYMLQRTQDV  268 (885)
T ss_pred             hhhheeecCcH---HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH-----HhcccchHHHHHHHHHHccCc
Confidence            55443332221   12211 1245555555566789999999998888733322     1122222356666666654 3


Q ss_pred             CchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHH----------HHhhccc------------------------
Q 015728          246 NSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAY----------ISNALTR------------------------  289 (401)
Q Consensus       246 ~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~l----------L~~~~~~------------------------  289 (401)
                      +..+...|......++..+--+..+..  ...||.|+.=          |.+. ..                        
T Consensus       269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~-eeD~~vpDreeDIkPRfhksk~~~~~  347 (885)
T KOG2023|consen  269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN-EEDESVPDREEDIKPRFHKSKEHGNG  347 (885)
T ss_pred             chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCc-cccccCCchhhhccchhhhchhccCc
Confidence            555888899999999987743333333  3577777653          2210 00                        


Q ss_pred             --------c------------chHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728          290 --------E------------RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC  349 (401)
Q Consensus       290 --------~------------~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~  349 (401)
                              +            =.+++-++++|..|+.-  -+..+.   ..+-++++.-+.+.+=.++|.++-+|..|+.
T Consensus       348 ~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL---~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE  422 (885)
T KOG2023|consen  348 EDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELL---PILLPLLKEHLSSEEWKVREAGVLALGAIAE  422 (885)
T ss_pred             cccccccccccccccccccccccHhhccHHHHHHHHHh--hHHHHH---HHHHHHHHHHcCcchhhhhhhhHHHHHHHHH
Confidence                    0            01233344445444421  122222   1233334434444455689999999999985


Q ss_pred             CCHHHHHHHHHc--CcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          350 DSLQAREEAICA--GVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       350 ~~~~~~~~~~~~--g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +   +..-++..  -.+|.|+.+|.+. .+-+|..+.|.|...++
T Consensus       423 G---cM~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~  463 (885)
T KOG2023|consen  423 G---CMQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSK  463 (885)
T ss_pred             H---HhhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhh
Confidence            4   33334332  3678889999776 88999999999999888

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.73  E-value=0.19  Score=53.62  Aligned_cols=183  Identities=15%  Similarity=0.151  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES  188 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g  188 (401)
                      .-.+..|+..|.+...-.+=.-..-..-|..|-.++||.|+..+        ++---+--=-..|+.++.-..+++. .+
T Consensus       484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~E--------LrpiLVFIWAKILAvD~SCQ~dLvK-e~  554 (1387)
T KOG1517|consen  484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARE--------LRPILVFIWAKILAVDPSCQADLVK-EN  554 (1387)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHh--------hhhhHHHHHHHHHhcCchhHHHHHh-cc
Confidence            34555566555555544432222222469999999999988643        3321111011356666555566664 45


Q ss_pred             chHHHHHHhhc-C--CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC-ch-hHHHHHHHHHHhcC-
Q 015728          189 KMESFIVLFEH-G--SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN-SE-ASDAGVRAFSALCS-  262 (401)
Q Consensus       189 ~i~~Lv~~L~~-~--~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~-~~~~a~~aL~~Ls~-  262 (401)
                      +-..++.+|.. +  +++-|.-||.+|..++....   ...+.- -..+.|..-...|.++ .. .+.+.+-+|..|=. 
T Consensus       555 g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~---lGQ~ac-l~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d  630 (1387)
T KOG1517|consen  555 GYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK---LGQKAC-LNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED  630 (1387)
T ss_pred             CceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc---hhHHHh-ccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence            55566667765 3  34777888889988855443   222222 2346667666677443 23 88999999999875 


Q ss_pred             CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC
Q 015728          263 TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI  307 (401)
Q Consensus       263 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~  307 (401)
                      .+++|..=++.++.+-|+.+|+   ++.++++..|+-+|..+-.+
T Consensus       631 ~~~Arw~G~r~~AhekL~~~Ls---D~vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  631 YDEARWSGRRDNAHEKLILLLS---DPVPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             cchhhhccccccHHHHHHHHhc---CccHHHHHHHHHHHHHHhcc
Confidence            5667877789999999999999   78899999999999988764

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.70  E-value=0.19  Score=46.87  Aligned_cols=225  Identities=14%  Similarity=0.096  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH
Q 015728          161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE  238 (401)
Q Consensus       161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~  238 (401)
                      .+.-|+. .+.++....+....+..+...-..+++.+++  |..+.|.+....++.+ +..+   +..+.|-.-...|.-
T Consensus       165 Trlfav~-cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~l-Tf~~---~~aqdi~K~~dli~d  239 (432)
T COG5231         165 TRLFAVS-CLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWIL-TFSK---ECAQDIDKMDDLIND  239 (432)
T ss_pred             HHHHHHH-HHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH-hcCH---HHHHHHHHHHHHHHH
Confidence            4555666 6677776655444334455566778888875  4678999999999999 7665   666555444467788


Q ss_pred             HHHHccC--CchhHHHHHHHHHHhcC--CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHH---HHH----HHhC-
Q 015728          239 IISLVHH--NSEASDAGVRAFSALCS--TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMA---RIE----QLLA-  306 (401)
Q Consensus       239 Lv~lL~~--~~~~~~~a~~aL~~Ls~--~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~---~L~----~La~-  306 (401)
                      |+.+.+.  ...+.+-....+.|++.  ..+....+.-.|-+.+-+++|..+.-++++++...-.   .|.    .|+. 
T Consensus       240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f  319 (432)
T COG5231         240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            8888854  34588888888999885  2245566666676777788876532344444433211   111    1111 


Q ss_pred             -----------------------CHhhHHHHHh-CCCcHHHHHHHHHhcCChh-HHHHHHHHHHHHhcCCHHHHHHHHHc
Q 015728          307 -----------------------IENSKDALIN-NPNGVYALVKMVFRVSDHE-GSENAINSLMMICCDSLQAREEAICA  361 (401)
Q Consensus       307 -----------------------~~~~~~~~~~-~~g~i~~Lv~~l~~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~  361 (401)
                                             ...|-..+.. +...+..|.+ +++...+. .-..|..=+..+....++.+..+..-
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~-~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky  398 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKK-YLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY  398 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHH-HHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence                                   1112222221 2235666777 45544332 44456666677777778999888899


Q ss_pred             CcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          362 GVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       362 g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      |+=+.++.||.++ ++++|-.|..+++.+-.
T Consensus       399 g~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         399 GVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             hhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            9999999999988 99999999999987643

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.06  Score=53.63  Aligned_cols=255  Identities=14%  Similarity=0.132  Sum_probs=159.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE  186 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~  186 (401)
                      ++..+.--+..|..+-...+  ...+.- ....+-|..+|.+.+.+     -+.+.+.++...|..+...++.    +.-
T Consensus       180 n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~e-----Vr~~~~t~l~~fL~eI~s~P~s----~d~  248 (675)
T KOG0212|consen  180 NPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDE-----VRTLTDTLLSEFLAEIRSSPSS----MDY  248 (675)
T ss_pred             CchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHH-----HHHHHHHHHHHHHHHHhcCccc----cCc
Confidence            45566667777776655433  333322 45677788888776643     1223344444455555533321    123


Q ss_pred             CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCch--hHHHHHH---HHHHhc
Q 015728          187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSE--ASDAGVR---AFSALC  261 (401)
Q Consensus       187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~a~~---aL~~Ls  261 (401)
                      ...++.++.-+.++++..|..|..-|..++....     +..+.-..|++..+...++++.+  .+..+..   .|..+.
T Consensus       249 ~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-----~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~  323 (675)
T KOG0212|consen  249 DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-----RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV  323 (675)
T ss_pred             ccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-----cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence            3468888899999999999999888888755543     23333334666666776644332  2333222   234444


Q ss_pred             CCCchhHHHHhcC-cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          262 STETNRKTLVQEG-AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       262 ~~~~n~~~iv~~G-~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                      ..+..... ++-| .|..|.+.|.   ++..+.+-.++.-+..|-....|..... .....+.|++.+ .+.+..+...+
T Consensus       324 s~~~~~~~-id~~~ii~vl~~~l~---~~~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tL-sd~sd~vvl~~  397 (675)
T KOG0212|consen  324 SSERLKEE-IDYGSIIEVLTKYLS---DDREETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTL-SDRSDEVVLLA  397 (675)
T ss_pred             hhhhhccc-cchHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhh-cCchhHHHHHH
Confidence            44443333 5544 7888888888   6778888888888888876655655554 556788888864 44455899999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCcHHHHHHH---hhcCCCHHHHHHHHHHHHHHHH
Q 015728          341 INSLMMICCDSLQAREEAICAGVLTQLLLL---LQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l---l~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +.+|.++|.... ..      |.++-+..|   ...+ ..-.+..+.-++|+++-
T Consensus       398 L~lla~i~~s~~-~~------~~~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  398 LSLLASICSSSN-SP------NLRKFLLSLLEMFKED-TKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             HHHHHHHhcCcc-cc------cHHHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHH
Confidence            999999998743 22      334444444   4444 55677788888888876

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.00056  Score=45.41  Aligned_cols=46  Identities=17%  Similarity=0.204  Sum_probs=37.9

Q ss_pred             ccccccccccCCceEcCccc-cccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           13 FRCPISLDLFTDPVTLCTGQ-TYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        13 ~~C~iC~~~~~~Pv~~~Cgh-~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      -.|.||.+--.|.|..-||| ..|..|-.+.++..+..||.||.++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            46999998777777778999 55999998888877888999988653

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.0014  Score=62.10  Aligned_cols=49  Identities=16%  Similarity=0.326  Sum_probs=39.6

Q ss_pred             CCcccccccccccCCce-----E---cCccccccHHhHHHHHHcC------CCCCCCCcccCC
Q 015728           10 PHLFRCPISLDLFTDPV-----T---LCTGQTYDRSSIEKWLAAG------NLTCPVTMQTLH   58 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv-----~---~~Cgh~fc~~Ci~~~~~~~------~~~CP~c~~~~~   58 (401)
                      -.+..|.||++...++.     .   .+|.|.||..||..|....      .+.||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            35889999999887766     3   4599999999999998532      478999997654

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.51  E-value=0.01  Score=46.14  Aligned_cols=68  Identities=18%  Similarity=0.157  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          111 TKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       111 ~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      .|..-++.|.+++..++.+...+++.|+||.+++.-.-++.      +|-++|.|+. .+++|+.++.+++++|.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~------nP~irEwai~-aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH------NPFIREWAIF-AIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc------cHHHHHHHHH-HHHHHHhCCHHHHHHHH
Confidence            35678899999999999999999999999999998655443      4889999999 89999988888877774

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.50  E-value=0.004  Score=42.64  Aligned_cols=54  Identities=17%  Similarity=0.128  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 015728          248 EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQL  304 (401)
Q Consensus       248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~L  304 (401)
                      .++..|+++|.+++........-....++|.|+.+|.   +++..++..|+.+|.+|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~---d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ---DDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT---SSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHhcC
Confidence            4788999999998876666555566779999999998   66779999999999865

...

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.42  Score=49.44  Aligned_cols=264  Identities=13%  Similarity=0.103  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC-----chhhhhh
Q 015728          110 ETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG-----ETESLNL  183 (401)
Q Consensus       110 ~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~-----~~~~~~~  183 (401)
                      -.|..++..|...|.+-+.. ....+ +.++..++.--+....      +..++..|+.|++..|-..     ++..+..
T Consensus       145 ~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~------s~~vRLaa~~aL~nsLef~~~nF~~E~ern~  217 (859)
T KOG1241|consen  145 MVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEET------SAAVRLAALNALYNSLEFTKANFNNEMERNY  217 (859)
T ss_pred             HHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCC------chhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence            57788889999988665433 23323 3445555544433332      2558888888555544322     2222333


Q ss_pred             cccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC
Q 015728          184 LNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS  262 (401)
Q Consensus       184 v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~  262 (401)
                      +     ++...+.-++++.+++..|...|..|.+..=  +-....|..  .....-+.-+ +++.++...+...=.++|.
T Consensus       218 i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY--~~m~~yM~~--alfaitl~amks~~deValQaiEFWstice  288 (859)
T KOG1241|consen  218 I-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYY--EFMEPYMEQ--ALFAITLAAMKSDNDEVALQAIEFWSTICE  288 (859)
T ss_pred             e-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            3     4444566677888999988888888844321  022223322  2333333333 5566677777777666663


Q ss_pred             CCch----hHHHH---------------hcCcHHHHHHHHHhhc-cc-cc--hHHHHHHHHHHHHhCCHhhHHHHHhCCC
Q 015728          263 TETN----RKTLV---------------QEGAINGLIAYISNAL-TR-ER--SLAAIAMARIEQLLAIENSKDALINNPN  319 (401)
Q Consensus       263 ~~~n----~~~iv---------------~~G~v~~Lv~lL~~~~-~~-~~--~~~~~a~~~L~~La~~~~~~~~~~~~~g  319 (401)
                      .+-.    ...++               -.+++|.|+++|.... +. ++  .....|-..|..++..       + ...
T Consensus       289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~-~D~  360 (859)
T KOG1241|consen  289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------V-GDD  360 (859)
T ss_pred             HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------h-ccc
Confidence            1110    11111               1367899999996421 11 11  1233344444444432       1 223


Q ss_pred             cHHH---HHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          320 GVYA---LVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       320 ~i~~---Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      .++.   +++-=++..+-+-++.|+.++.++-.+....+..-+..++++.++.+|.+. +-.+|+.++|.|..+.++.||
T Consensus       361 Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e  439 (859)
T KOG1241|consen  361 IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPE  439 (859)
T ss_pred             chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchh
Confidence            3333   333223455667889999999998877666666777899999999999855 889999999999999998887


Q ss_pred             hh
Q 015728          397 EL  398 (401)
Q Consensus       397 ~~  398 (401)
                      -.
T Consensus       440 ~~  441 (859)
T KOG1241|consen  440 AI  441 (859)
T ss_pred             hc
Confidence            54

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.00065  Score=60.69  Aligned_cols=55  Identities=18%  Similarity=0.347  Sum_probs=42.5

Q ss_pred             CcccccccccccCCce----------EcCccccccHHhHHHHHHcC-CCCCCCCcccCCCCCCCCc
Q 015728           11 HLFRCPISLDLFTDPV----------TLCTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHDPSIVPN   65 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv----------~~~Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~~~~~~n   65 (401)
                      ++-.|.+|.+-+...+          +++|+|.|...||.-|..-| ..+||.|++.+..+....|
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            5678999998776544          58999999999999997654 5789999987765443333

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0077  Score=56.76  Aligned_cols=47  Identities=17%  Similarity=0.508  Sum_probs=33.5

Q ss_pred             ccccccccccCCceE---c-CccccccHHhHHHHHHcCC--CCCCCCcccCCC
Q 015728           13 FRCPISLDLFTDPVT---L-CTGQTYDRSSIEKWLAAGN--LTCPVTMQTLHD   59 (401)
Q Consensus        13 ~~C~iC~~~~~~Pv~---~-~Cgh~fc~~Ci~~~~~~~~--~~CP~c~~~~~~   59 (401)
                      -.|.||.+.+-.-.-   + .|||+|...|+..||...+  .+||.|+-.+..
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            469999554432221   3 3999999999999999643  589999844433

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.26  E-value=0.25  Score=51.28  Aligned_cols=194  Identities=15%  Similarity=0.119  Sum_probs=130.7

Q ss_pred             hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHH-HHHhcccchhhhhhhhccchHHHHHHHHHccCCc--hhHHHHHHHH
Q 015728          181 LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVE-VIISSSHETKELCCKLGKDDRLLREIISLVHHNS--EASDAGVRAF  257 (401)
Q Consensus       181 ~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~-~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~a~~aL  257 (401)
                      +...+..|+...|+++....+.+.+-.+..+|. .+ +...+         .+...++++...++.+.  ...-.++.++
T Consensus       497 ~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i-~f~~~---------~~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  497 RAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKI-DFPGE---------RSYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             cCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhc-CCCCC---------chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            344458899999999998888888888888876 44 43321         12245677777775443  3677899999


Q ss_pred             HHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhC-CCcHHHHHHHHHhcCChh
Q 015728          258 SALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINN-PNGVYALVKMVFRVSDHE  335 (401)
Q Consensus       258 ~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~-~g~i~~Lv~~l~~~~~~~  335 (401)
                      .||++ +...|.++.+.-+++-+-.++.   ..++..+..++..+.||.-++--....+.+ ....+.+.. .+..-...
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~---ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~-~~e~~~E~  642 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMT---EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNL-NLEVADEK  642 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhh---cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHH-HHHhhhhH
Confidence            99996 5557888888777777666666   567788999999999999887755444434 456666666 44444555


Q ss_pred             HHHHHHHHHHHHhcCCHHHHH-HHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728          336 GSENAINSLMMICCDSLQARE-EAICAGVLTQLLLLLQSQCSNRTKTKARMLLK  388 (401)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~-~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~  388 (401)
                      ..-.+++++..|...+.+... ..........++.+++++....+.......++
T Consensus       643 ~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln  696 (748)
T KOG4151|consen  643 FELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILN  696 (748)
T ss_pred             HhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhh
Confidence            666677777767766665444 44455666777777777733344444444444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.11  Score=51.52  Aligned_cols=192  Identities=10%  Similarity=0.041  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES  188 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g  188 (401)
                      .-.-.+++..|..+.+.-..-|..+.+..++.+|+++|+.++-.        +..-+.. ...|+-..=++.+..+.+.|
T Consensus       403 ~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peim--------i~~~~t~-~icn~vv~fsnL~~~fL~~~  473 (743)
T COG5369         403 DLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIM--------IEFPDTI-DICNKVVPFSNLGAGFLEKS  473 (743)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccce--------eeccchh-hhhheeeeccchHHHHHHhh
Confidence            33445566667777766666789998999999999999886532        3444444 44444433344444555788


Q ss_pred             chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc-h
Q 015728          189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET-N  266 (401)
Q Consensus       189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~-n  266 (401)
                      .|..++..+.+.+...|.+..|+|.+++-..+.+ +--+.+... | +..++.+. +++-.++.+....|+|+..+.. |
T Consensus       474 iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~-ekf~~Laki-g-~~kvl~~~NDpc~~vq~q~lQilrNftc~~~kn  550 (743)
T COG5369         474 IIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKN-EKFKFLAKI-G-VEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKN  550 (743)
T ss_pred             HHHHHHHHhhcchhhhhhcchhhhhhhhhcCcch-hhhhhHHhc-C-HHHHHHHhcCcccccHHHHHHHHHhcccccccc
Confidence            9999999998888899999999999994444321 212333332 5 47777777 4556799999999999986332 2


Q ss_pred             ---hHHHHhcC----cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728          267 ---RKTLVQEG----AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI  315 (401)
Q Consensus       267 ---~~~iv~~G----~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~  315 (401)
                         +.-..+..    ....|++.+.   ..++-..+..+-.|.+++.++++...++
T Consensus       551 Ekskdv~~K~~p~~ylfk~l~~k~e---~~np~~i~~~~yilv~~aa~d~~l~~~V  603 (743)
T COG5369         551 EKSKDVFIKATPRRYLFKRLIDKYE---ENNPMEILEGCYILVRNAACDDTLDYIV  603 (743)
T ss_pred             cccceeEEecChHHHHHHHHHHHHH---hcCchhhhhhHHHHHHHHhccchHHHHH
Confidence               21112221    2334555555   3455455556777887777666554443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.22  E-value=0.0037  Score=57.84  Aligned_cols=51  Identities=18%  Similarity=0.386  Sum_probs=40.4

Q ss_pred             CCcccccccccccCC--ceE--cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCC
Q 015728           10 PHLFRCPISLDLFTD--PVT--LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI   62 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~--Pv~--~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~   62 (401)
                      ...|.|||+...|..  +..  .+|||.|+..++.+.-  ....||.|+.++...++
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~Di  165 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDI  165 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCE
Confidence            567999999999954  222  3899999999998873  34579999999987653

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.004  Score=56.60  Aligned_cols=47  Identities=21%  Similarity=0.415  Sum_probs=38.4

Q ss_pred             ccccccc-ccCCceE----cCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728           14 RCPISLD-LFTDPVT----LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        14 ~C~iC~~-~~~~Pv~----~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      .||+|.. .+..|-.    -+|||+.|.+|....|..|...||.|+..+...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~   53 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN   53 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence            5999987 4555542    379999999999999999999999999877554

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.036  Score=54.86  Aligned_cols=186  Identities=9%  Similarity=0.019  Sum_probs=129.3

Q ss_pred             HHHHHHHhhcCCchhh--hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHH
Q 015728          165 SLSCVQKLLLVGETES--LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISL  242 (401)
Q Consensus       165 a~~~~L~~l~~~~~~~--~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~l  242 (401)
                      +++ ++...+....-.  |.-+.+....++|+++|+.++..+.--+...++|++-..+   ..+..+... |+|..|+.+
T Consensus       407 ~a~-~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fs---nL~~~fL~~-~iIdvl~~~  481 (743)
T COG5369         407 VAI-VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFS---NLGAGFLEK-SIIDVLVNL  481 (743)
T ss_pred             HHH-HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeecc---chHHHHHHh-hHHHHHHHH
Confidence            344 444444433322  3334567789999999998777777777778888744444   566666664 899999999


Q ss_pred             c-cCCchhHHHHHHHHHHhcCCCc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh----hHHHHH
Q 015728          243 V-HHNSEASDAGVRAFSALCSTET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN----SKDALI  315 (401)
Q Consensus       243 L-~~~~~~~~~a~~aL~~Ls~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~----~~~~~~  315 (401)
                      + +.+...+.++.|+|+.+.-+.+  .+-+....-++.-++.+..   ++.-.+++..+.+|.|+.-+..    .+..+.
T Consensus       482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~N---Dpc~~vq~q~lQilrNftc~~~knEkskdv~~  558 (743)
T COG5369         482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTN---DPCFKVQHQVLQILRNFTCDTSKNEKSKDVFI  558 (743)
T ss_pred             hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhc---CcccccHHHHHHHHHhcccccccccccceeEE
Confidence            9 4566799999999999986554  3666777788999999998   6788899999999999875321    111111


Q ss_pred             hCCC----cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015728          316 NNPN----GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC  360 (401)
Q Consensus       316 ~~~g----~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  360 (401)
                       ...    ....|++ .++..+|...+..+.+|.+++..+++.+.-+.+
T Consensus       559 -K~~p~~ylfk~l~~-k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~  605 (743)
T COG5369         559 -KATPRRYLFKRLID-KYEENNPMEILEGCYILVRNAACDDTLDYIVQS  605 (743)
T ss_pred             -ecChHHHHHHHHHH-HHHhcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence             111    2345566 345666677777899999988877776655553

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.27  Score=46.02  Aligned_cols=201  Identities=12%  Similarity=0.082  Sum_probs=133.8

Q ss_pred             hcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHH--HHHHc-cCCchhHHHHHHHHHH
Q 015728          183 LLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLRE--IISLV-HHNSEASDAGVRAFSA  259 (401)
Q Consensus       183 ~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~--Lv~lL-~~~~~~~~~a~~aL~~  259 (401)
                      .++.+|.++.++.++-..+.++-..|...|..+ +...   ..-..|-.+ .....  ++.+- +.+.-++......+..
T Consensus       123 lvvNaeilklildcIggeddeVAkAAiesikri-alfp---aaleaiFeS-ellDdlhlrnlaakcndiaRvRVleLIie  197 (524)
T KOG4413|consen  123 LVVNAEILKLILDCIGGEDDEVAKAAIESIKRI-ALFP---AALEAIFES-ELLDDLHLRNLAAKCNDIARVRVLELIIE  197 (524)
T ss_pred             HHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhcH---HHHHHhccc-ccCChHHHhHHHhhhhhHHHHHHHHHHHH
Confidence            456889999999999888999998998999999 7765   434444443 22222  22222 4444577788888888


Q ss_pred             hcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc-CChhHH
Q 015728          260 LCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV-SDHEGS  337 (401)
Q Consensus       260 Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~-~~~~~~  337 (401)
                      +++ .+......-.+|.+..|..=|..  ..+.-+..+.+.....|+....+|+.+. ++|.|..+-..+... ++|-.+
T Consensus       198 ifSiSpesaneckkSGLldlLeaElkG--teDtLVianciElvteLaeteHgrefla-QeglIdlicnIIsGadsdPfek  274 (524)
T KOG4413|consen  198 IFSISPESANECKKSGLLDLLEAELKG--TEDTLVIANCIELVTELAETEHGREFLA-QEGLIDLICNIISGADSDPFEK  274 (524)
T ss_pred             HHhcCHHHHhHhhhhhHHHHHHHHhcC--CcceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHHHHHHHhhCCCCCcHHH
Confidence            874 66677777789999988888883  4677788899999999999999998885 889998888844322 333333


Q ss_pred             HHHHHHHHHHhcCCH--H-HHHHHHH--cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          338 ENAINSLMMICCDSL--Q-AREEAIC--AGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       338 ~~a~~~L~~l~~~~~--~-~~~~~~~--~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      -.++.....+..+..  + .-+.+.+  --+|...+++++.. ++...+.|...|.++..
T Consensus       275 fralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGS  333 (524)
T KOG4413|consen  275 FRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGS  333 (524)
T ss_pred             HHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccC
Confidence            334444444432210  0 0011111  12334445566666 78888888888887765

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.13  E-value=0.13  Score=43.36  Aligned_cols=123  Identities=17%  Similarity=0.226  Sum_probs=94.4

Q ss_pred             HHHHHHHHHcc-CC------chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          234 RLLREIISLVH-HN------SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       234 g~i~~Lv~lL~-~~------~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      |++..|+.++. +.      .+....++.++..|-.+.-.-+..++...|..++..+... ..+..+.+.|++.|..++.
T Consensus        11 ~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~-~~d~~i~q~sLaILEs~Vl   89 (160)
T PF11841_consen   11 DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSS-AMDASILQRSLAILESIVL   89 (160)
T ss_pred             cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccc-cccchHHHHHHHHHHHHHh
Confidence            45799999993 33      2467788899988887766677788888899999999742 2367899999999999998


Q ss_pred             CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHH
Q 015728          307 IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEA  358 (401)
Q Consensus       307 ~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~  358 (401)
                      +....-..+.++=-++.|+.. +..+++..+.+|+..+-.|....+ .-|+++
T Consensus        90 ~S~~ly~~V~~evt~~~Li~h-Lq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   90 NSPKLYQLVEQEVTLESLIRH-LQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             CCHHHHHHHhccCCHHHHHHH-HHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            877755555677789999994 666888999999999988765533 334333

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=96.12  E-value=0.0015  Score=47.27  Aligned_cols=47  Identities=17%  Similarity=0.430  Sum_probs=23.2

Q ss_pred             cccccccccccC-C---ceEc----CccccccHHhHHHHHHc--C--------CCCCCCCcccCC
Q 015728           12 LFRCPISLDLFT-D---PVTL----CTGQTYDRSSIEKWLAA--G--------NLTCPVTMQTLH   58 (401)
Q Consensus        12 ~~~C~iC~~~~~-~---Pv~~----~Cgh~fc~~Ci~~~~~~--~--------~~~CP~c~~~~~   58 (401)
                      +..|+||..++. +   |...    .|+..|...|+.+||..  +        ...||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            568999999765 2   4432    59999999999999984  1        135999988764

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.0036  Score=55.28  Aligned_cols=53  Identities=25%  Similarity=0.488  Sum_probs=44.6

Q ss_pred             CcccccccccccCCceE----cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC
Q 015728           11 HLFRCPISLDLFTDPVT----LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP   64 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~----~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~   64 (401)
                      ..|.||+|.+.+.+.+.    .+|||.||..|.++... +...||+|+.++..+++..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence            56899999999987553    48999999999998877 6778999999998876543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.07  E-value=1.4  Score=42.11  Aligned_cols=160  Identities=16%  Similarity=0.176  Sum_probs=98.5

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      ....+.+.+.+.  +...+..|...+..           +...-++|.|..+|.+.+.        .++..|+. .|..+
T Consensus        44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~-----------~~~~~av~~l~~~l~d~~~--------~vr~~a~~-aLg~~  101 (335)
T COG1413          44 AADELLKLLEDE--DLLVRLSAAVALGE-----------LGSEEAVPLLRELLSDEDP--------RVRDAAAD-ALGEL  101 (335)
T ss_pred             hHHHHHHHHcCC--CHHHHHHHHHHHhh-----------hchHHHHHHHHHHhcCCCH--------HHHHHHHH-HHHcc
Confidence            344444445433  35555555555222           1123368999999988774        47887777 55532


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHH
Q 015728          174 LVGETESLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDA  252 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  252 (401)
                      -           ....++.++..|. +++..+|..++.+|..+ ..              ...+.+|+.++.+.....  
T Consensus       102 ~-----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~-~~--------------~~a~~~l~~~l~~~~~~~--  153 (335)
T COG1413         102 G-----------DPEAVPPLVELLENDENEGVRAAAARALGKL-GD--------------ERALDPLLEALQDEDSGS--  153 (335)
T ss_pred             C-----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc-Cc--------------hhhhHHHHHHhccchhhh--
Confidence            1           2345888999998 58889999999999888 32              134788888885433111  


Q ss_pred             HHHHHHHhcCCCchhHH-------HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH
Q 015728          253 GVRAFSALCSTETNRKT-------LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE  308 (401)
Q Consensus       253 a~~aL~~Ls~~~~n~~~-------iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~  308 (401)
                      ++..+  .......|..       +.+.-.++.+...+.   +....++..|..+|..+....
T Consensus       154 a~~~~--~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~---~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         154 AAAAL--DAALLDVRAAAAEALGELGDPEAIPLLIELLE---DEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             hhhhc--cchHHHHHHHHHHHHHHcCChhhhHHHHHHHh---CchHHHHHHHHHHHHHhhcch
Confidence            11111  0000011211       223447888999998   667789999999999887654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.06  E-value=1.4  Score=44.45  Aligned_cols=251  Identities=11%  Similarity=0.098  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES  188 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g  188 (401)
                      .-.+.++++.+..++.++-  -..+++ ..|..|-.+|+++...        .+..|+. +|+.|+.-.++.. .+... 
T Consensus       278 emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~--------~rFsA~R-iln~lam~~P~kv-~vcN~-  343 (898)
T COG5240         278 EMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVV--------LRFSAMR-ILNQLAMKYPQKV-SVCNK-  343 (898)
T ss_pred             hhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHH--------HHHHHHH-HHHHHHhhCCcee-eecCh-
Confidence            3467888888888776652  222222 2577888888887644        7888888 9998886554321 11111 


Q ss_pred             chHH-------------HHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHH
Q 015728          189 KMES-------------FIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVR  255 (401)
Q Consensus       189 ~i~~-------------Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~  255 (401)
                      -+..             +-.+|+.|+.+.-..-...+-+++...+  |.+|..+.   .++..|--++..   -+..-+.
T Consensus       344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~S--D~FKiI~i---da~rsLsl~Fp~---k~~s~l~  415 (898)
T COG5240         344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMS--DGFKIIAI---DALRSLSLLFPS---KKLSYLD  415 (898)
T ss_pred             hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhc--cCceEEeH---HHHHHHHhhCcH---HHHHHHH
Confidence            1222             2234444444333333333333312111  12222221   122222221100   0111111


Q ss_pred             HHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH------hCCC--------cH
Q 015728          256 AFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI------NNPN--------GV  321 (401)
Q Consensus       256 aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~------~~~g--------~i  321 (401)
                      .|.+.-.++.. -+ .+.-+|.++.+.+.    -.++.++.|+..|+..-.+-+.....+      +++|        .|
T Consensus       416 FL~~~L~~eGg-~e-FK~~~Vdaisd~~~----~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yv  489 (898)
T COG5240         416 FLGSSLLQEGG-LE-FKKYMVDAISDAME----NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYV  489 (898)
T ss_pred             HHHHHHHhccc-ch-HHHHHHHHHHHHHh----hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHH
Confidence            11111111100 00 01113445555555    245677777777776665544332221      2222        22


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          322 YALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       322 ~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ..+...+. ..+..++..|+.+|.-++-+-.+   .+....+...|-..+.+. ++++|+.|+-+|+.+..
T Consensus       490 rhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         490 RHIYNRLI-LENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQ-DDEVRDRASFLLRNMRL  555 (898)
T ss_pred             HHHHHHHH-HhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhhhh
Confidence            22222221 12335777788888665543211   122233344566667666 89999999999998764

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.03  E-value=0.36  Score=51.10  Aligned_cols=266  Identities=12%  Similarity=0.118  Sum_probs=150.4

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC-Cchhhhhhcc
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV-GETESLNLLN  185 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~-~~~~~~~~v~  185 (401)
                      ++.+.|..|..-|-.-..++..+-+.=-+..++..|+++|++..+        ++|..|+.| +.-|.. -.++..+-  
T Consensus        17 sDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ng--------EVQnlAVKC-lg~lvsKvke~~le~--   85 (1233)
T KOG1824|consen   17 SDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNG--------EVQNLAVKC-LGPLVSKVKEDQLET--   85 (1233)
T ss_pred             CCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCc--------HHHHHHHHH-HHHHHhhchHHHHHH--
Confidence            456688888888776665543221111124578889999987764        599999994 444441 11111111  


Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc--hhhhhhhhccchHHHHHHHHHcc--CC-chhHHHHHHHHHHh
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE--TKELCCKLGKDDRLLREIISLVH--HN-SEASDAGVRAFSAL  260 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~--~~~~~~~i~~~~g~i~~Lv~lL~--~~-~~~~~~a~~aL~~L  260 (401)
                         .+..|..-+-+|..+.+-.++..|...++...+  +..+...+..  .+.|.|..-+.  ++ ..++..++..|..+
T Consensus        86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~--~~t~~l~~~i~~qe~~sai~~e~lDil~d~  160 (1233)
T KOG1824|consen   86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCK--RITPKLKQAISKQEDVSAIKCEVLDILADV  160 (1233)
T ss_pred             ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHH--HHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence               133333333345555555555555444343321  0012222222  24455555552  22 23566666655543


Q ss_pred             c-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHH
Q 015728          261 C-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSEN  339 (401)
Q Consensus       261 s-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~  339 (401)
                      - ...+--.. ...+....++.-|.   .....++..|+.+|..|+....+ ...   .+.|..|++-+-....+....-
T Consensus       161 lsr~g~ll~~-fh~~il~~l~~ql~---s~R~aVrKkai~~l~~la~~~~~-~ly---~~li~~Ll~~L~~~~q~~~~rt  232 (1233)
T KOG1824|consen  161 LSRFGTLLPN-FHLSILKCLLPQLQ---SPRLAVRKKAITALGHLASSCNR-DLY---VELIEHLLKGLSNRTQMSATRT  232 (1233)
T ss_pred             HHhhcccCcc-hHHHHHHHHhhccc---ChHHHHHHHHHHHHHHHHHhcCH-HHH---HHHHHHHHhccCCCCchHHHHH
Confidence            2 22111111 33455555666665   45567899999999999864222 222   1456667776554455566677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          340 AINSLMMICCDSLQAREEAICAGVLTQLLLLL---QSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       340 a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll---~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      -+.+|..+|...+ .|.--.-...++.+.+..   +.+ .++-||+....+..+-+.+|-|.
T Consensus       233 ~Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei  292 (1233)
T KOG1824|consen  233 YIQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEI  292 (1233)
T ss_pred             HHHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhh
Confidence            7788888876543 222333455678888887   555 78999999999999888777664

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.0041  Score=60.25  Aligned_cols=53  Identities=17%  Similarity=0.340  Sum_probs=40.4

Q ss_pred             CCCCCcccccccccccC-----------------CceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728            7 MTIPHLFRCPISLDLFT-----------------DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~-----------------~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ..+...--|+||+....                 +-+.+||.|.|.+.|+.+|...-...||+||.++..
T Consensus       566 ~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  566 AFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             chhhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            33556678999987542                 133459999999999999998556689999998753

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.0042  Score=58.25  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=39.3

Q ss_pred             cccccccccccCCceEcCccccc-cHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           12 LFRCPISLDLFTDPVTLCTGQTY-DRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~~Cgh~f-c~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .-.|-||+.-.+|-+.+||.|.+ |..|-+...- ....||.||+++..
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence            56899999999999999999955 9999876553 56779999998754

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.0029  Score=59.95  Aligned_cols=58  Identities=33%  Similarity=0.613  Sum_probs=44.4

Q ss_pred             cccccccccccCCceE-----cCccccccHHhHHHHHHcC-CCCCCCCcccCCCCCCCCcHHHH
Q 015728           12 LFRCPISLDLFTDPVT-----LCTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHDPSIVPNHTLR   69 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~-----~~Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~~~~~~n~~l~   69 (401)
                      ..+||||++-+.-|.-     +.|||-|-..||++|+.+. ...||.|......+++++-..++
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR   67 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALR   67 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHH
Confidence            4689999998877653     5799999999999999742 47799998766665666555443

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.06  Score=54.57  Aligned_cols=218  Identities=17%  Similarity=0.142  Sum_probs=131.0

Q ss_pred             hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc------h-hhhhhcccCCchHHHHHHhhcCCHHHHHHHHHH
Q 015728          139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE------T-ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHL  211 (401)
Q Consensus       139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~------~-~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~  211 (401)
                      ....++.+++..        ..++..|+. +++....--      + +.++..  ..+...+-+.+...+..+|..|+.+
T Consensus       236 Y~~A~~~lsD~~--------e~VR~aAvq-lv~v~gn~~p~~~e~e~~e~kl~--D~aF~~vC~~v~D~sl~VRV~AaK~  304 (823)
T KOG2259|consen  236 YSRAVKHLSDDY--------EDVRKAAVQ-LVSVWGNRCPAPLERESEEEKLK--DAAFSSVCRAVRDRSLSVRVEAAKA  304 (823)
T ss_pred             HHHHHHHhcchH--------HHHHHHHHH-HHHHHHhcCCCcccchhhhhhhH--HHHHHHHHHHHhcCceeeeehHHHH
Confidence            445667776654        347777766 554332110      1 112222  2357777788888889999999999


Q ss_pred             HHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHh--cC------------CCchhHHHHhcCcHH
Q 015728          212 VEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSAL--CS------------TETNRKTLVQEGAIN  277 (401)
Q Consensus       212 L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~L--s~------------~~~n~~~iv~~G~v~  277 (401)
                      |+.+ ...+     ...|-.  -.=..++.=++....+.+.......+.  ++            .++.-..++.+|+-.
T Consensus       305 lG~~-~~vS-----ee~i~Q--TLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACG  376 (823)
T KOG2259|consen  305 LGEF-EQVS-----EEIIQQ--TLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACG  376 (823)
T ss_pred             hchH-HHhH-----HHHHHH--HHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccc
Confidence            9988 4433     111110  011112221111111222222222222  00            122344578899999


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHH
Q 015728          278 GLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREE  357 (401)
Q Consensus       278 ~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  357 (401)
                      ++|+=|.   +.--+++..|+..++.|+.+.-+-..     .++.-||. |+++.-..++..|+.+|..|+.+      .
T Consensus       377 A~VhGlE---DEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvD-MfNDE~~~VRL~ai~aL~~Is~~------l  441 (823)
T KOG2259|consen  377 ALVHGLE---DEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVD-MFNDEIEVVRLKAIFALTMISVH------L  441 (823)
T ss_pred             eeeeech---HHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHH-HhccHHHHHHHHHHHHHHHHHHH------h
Confidence            9999998   67779999999999999974332221     24667889 68877778999999999999876      2


Q ss_pred             HHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          358 AICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       358 ~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      .+++.-++.++.-|.+. +..+|+....+|+...
T Consensus       442 ~i~eeql~~il~~L~D~-s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  442 AIREEQLRQILESLEDR-SVDVREALRELLKNAR  474 (823)
T ss_pred             eecHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcC
Confidence            23344456667777666 7888888877776543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.94  E-value=0.013  Score=40.07  Aligned_cols=54  Identities=13%  Similarity=0.089  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          160 QFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       160 ~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      .++..|++ .|..++....+...-. ....++.|+.+|++++.++|..|+++|.+|
T Consensus         2 ~vR~~A~~-aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAW-ALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHH-HHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHH-HHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            47899999 8888775554443333 356799999999988899999999999865

...

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.7  Score=50.19  Aligned_cols=226  Identities=18%  Similarity=0.229  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHhhcCCchhhhhhccc--CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH
Q 015728          159 VQFVEESLSCVQKLLLVGETESLNLLNE--ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL  236 (401)
Q Consensus       159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i  236 (401)
                      ..+|..+-. +|..++..+.. ...+.+  ......|.+-+++.....|.....+|..|.-..+  .+++..+..   .|
T Consensus       668 ~~vQkK~yr-lL~~l~~~~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~--~e~~~~i~k---~I  740 (1176)
T KOG1248|consen  668 TKVQKKAYR-LLEELSSSPSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS--AEHCDLIPK---LI  740 (1176)
T ss_pred             HHHHHHHHH-HHHHHhcCCch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--HHHHHHHHH---HH
Confidence            568999999 88887755221 112211  0122333344444444445444444444422211  144555532   34


Q ss_pred             HHHHHHccC-CchhHHHHHHHHHHhcCCCchhHHHHhcC------cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh
Q 015728          237 REIISLVHH-NSEASDAGVRAFSALCSTETNRKTLVQEG------AINGLIAYISNALTRERSLAAIAMARIEQLLAIEN  309 (401)
Q Consensus       237 ~~Lv~lL~~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G------~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~  309 (401)
                      +.++-.++. +...++.|-.+|..++.    .....+.|      .|...+..+.-. --.......+.. |-.+...--
T Consensus       741 ~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isag-l~gd~~~~~as~-Ivai~~il~  814 (1176)
T KOG1248|consen  741 PEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAG-LVGDSTRVVASD-IVAITHILQ  814 (1176)
T ss_pred             HHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhh-hcccHHHHHHHH-HHHHHHHHH
Confidence            544444443 55689999999998873    11122222      455555555421 001222222222 222222111


Q ss_pred             hHHHHHhCCCcHHHHHHHH---HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHH
Q 015728          310 SKDALINNPNGVYALVKMV---FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARML  386 (401)
Q Consensus       310 ~~~~~~~~~g~i~~Lv~~l---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~  386 (401)
                      ....+. +.+.++.+++++   +..+++.+...|+..+..++...++..-.-...-.++.++.+.++. ....|.+...+
T Consensus       815 e~~~~l-d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  815 EFKNIL-DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHhccc-cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            222232 445566666543   4557788999999999999888776554555566889999988777 88999999999


Q ss_pred             HHHHHH-hhHHhhc
Q 015728          387 LKLLRS-KWAEELK  399 (401)
Q Consensus       387 L~~l~~-~~~e~~~  399 (401)
                      |..|.+ +-++|++
T Consensus       893 lekLirkfg~~eLe  906 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELE  906 (1176)
T ss_pred             HHHHHHHhCHHHHH
Confidence            988777 4455554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.83  E-value=1.4  Score=43.49  Aligned_cols=188  Identities=11%  Similarity=0.090  Sum_probs=115.2

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--C---C-ch--hHHHHHHHHHHhcCC
Q 015728          192 SFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--H---N-SE--ASDAGVRAFSALCST  263 (401)
Q Consensus       192 ~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~---~-~~--~~~~a~~aL~~Ls~~  263 (401)
                      .+..++...+.+.|-.|.....+++-.++-+-.+|+.+-++.|+ +++-++|.  +   + ++  -+.-+...|.-.|+.
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf-~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGF-HFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhcc-chHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            35556666666777777777777733333223556667677675 88888882  1   1 22  455566777778888


Q ss_pred             Cc--hhHHHHhcCcHHHHHHHHHhhccccch------HHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChh
Q 015728          264 ET--NRKTLVQEGAINGLIAYISNALTRERS------LAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHE  335 (401)
Q Consensus       264 ~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~------~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~  335 (401)
                      ++  ....|++  .||.|.+++..  ..+.+      +.+.+-..|...+..+.|...++ ..|+++.+-++-.-.+...
T Consensus        94 pElAsh~~~v~--~IP~llev~~~--~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~  168 (698)
T KOG2611|consen   94 PELASHEEMVS--RIPLLLEVMSK--GIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSH  168 (698)
T ss_pred             hhhccCHHHHH--hhhHHHHHHHh--cCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCch
Confidence            87  4666666  69999999985  33333      78889999999999998999887 8899999999433333323


Q ss_pred             HHHHHHHHHHHHhcCCH---HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728          336 GSENAINSLMMICCDSL---QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLK  388 (401)
Q Consensus       336 ~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~  388 (401)
                      .+.-|+.++.-+...-.   +.-..+..-  |..+-.-++.. .+..|-....+|-
T Consensus       169 d~alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~-~~a~KfElc~lL~  221 (698)
T KOG2611|consen  169 DMALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVL-HNALKFELCHLLS  221 (698)
T ss_pred             hHHHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHh-hhHHHHHHHHHHH
Confidence            44445555544433211   111111111  33333333444 5566666666665

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.75  E-value=0.0063  Score=40.01  Aligned_cols=43  Identities=19%  Similarity=0.234  Sum_probs=21.7

Q ss_pred             ccccccccC--CceEc--CccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728           15 CPISLDLFT--DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTL   57 (401)
Q Consensus        15 C~iC~~~~~--~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~   57 (401)
                      ||+|.+.+.  +--..  +||+-+|+.|+.+........||.||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            788988772  21123  58999999999988775677899999864

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.73  E-value=0.012  Score=39.26  Aligned_cols=41  Identities=24%  Similarity=0.463  Sum_probs=31.7

Q ss_pred             ccccccc--ccCCceEcCcc-----ccccHHhHHHHHHcC-CCCCCCCc
Q 015728           14 RCPISLD--LFTDPVTLCTG-----QTYDRSSIEKWLAAG-NLTCPVTM   54 (401)
Q Consensus        14 ~C~iC~~--~~~~Pv~~~Cg-----h~fc~~Ci~~~~~~~-~~~CP~c~   54 (401)
                      .|-||++  .-.+|...||.     +.+-..|+.+|+... ...||.|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889987  44567778875     568899999999863 56799984

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.73  E-value=0.64  Score=42.41  Aligned_cols=155  Identities=14%  Similarity=0.153  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcccC
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLNEE  187 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~~~  187 (401)
                      ......|+.-|+-+++ +++.|..+.++...-.|.-+|...+..   .....++-.+++ +.+.|. .++.+....+.+.
T Consensus        64 snRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~---r~~E~LRLtsLG-VIgaLvK~d~~evi~fLl~t  138 (262)
T PF04078_consen   64 SNRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKT---RPFEYLRLTSLG-VIGALVKTDDPEVISFLLQT  138 (262)
T ss_dssp             HHHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----S---HHHHHHHHHHHH-HHHHHHTT--HHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccc---cccchhhHhHHH-HHHHHHcCCcHHHHHHHHhh
Confidence            3566788888888888 556888888999887788888665543   112345555666 555555 3444455566688


Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccch-------HHHHHHHHHc--cCCchhHHHHHHHHH
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD-------RLLREIISLV--HHNSEASDAGVRAFS  258 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~-------g~i~~Lv~lL--~~~~~~~~~a~~aL~  258 (401)
                      +.||..++.++.|+.-.|.-|+.++.++.. ++   ..-..++...       .++..+|.-+  +.++...+...++-.
T Consensus       139 EiiplcLr~me~GselSKtvAtfIlqKIL~-dd---~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYl  214 (262)
T PF04078_consen  139 EIIPLCLRIMEFGSELSKTVATFILQKILL-DD---VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYL  214 (262)
T ss_dssp             THHHHHHHHHHHS-HHHHHHHHHHHHHHHH-SH---HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHHHHc-ch---hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHH
Confidence            999999999999999999999999999834 33   2233333221       2334444433  345679999999999


Q ss_pred             HhcCCCchhHHHHh
Q 015728          259 ALCSTETNRKTLVQ  272 (401)
Q Consensus       259 ~Ls~~~~n~~~iv~  272 (401)
                      .|+.++..+..+.+
T Consensus       215 RLsdnprar~aL~~  228 (262)
T PF04078_consen  215 RLSDNPRAREALRQ  228 (262)
T ss_dssp             HHTTSTTHHHHHHH
T ss_pred             HHccCHHHHHHHHH
Confidence            99999988887764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.65  E-value=0.041  Score=42.81  Aligned_cols=64  Identities=14%  Similarity=0.198  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHH
Q 015728          250 SDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDAL  314 (401)
Q Consensus       250 ~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~  314 (401)
                      +....++|.||+ .++.++..+.+.|+||.++..-.-. +.++-+++.|+.++.+|+.+. +++..+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n~eNQ~~I   68 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGNPENQEFI   68 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            566788999999 6888999999999999999986421 456789999999999999764 555544

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.56  E-value=0.53  Score=49.48  Aligned_cols=165  Identities=14%  Similarity=0.145  Sum_probs=112.3

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE  186 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~  186 (401)
                      ++...|..|++.+-.-+...+.--      -..|-.++...+.+        .++..-.-- =|.+.+..+++ ..++  
T Consensus        31 ~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd--------~ElKrL~yl-Yl~~yak~~P~-~~lL--   92 (757)
T COG5096          31 SNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRD--------VELKRLLYL-YLERYAKLKPE-LALL--   92 (757)
T ss_pred             cChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcC--------HHHHHHHHH-HHHHHhccCHH-HHHH--
Confidence            456678888888777766655411      12555566665443        344443332 23334433332 2233  


Q ss_pred             CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728          187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                        ++..+.+-++++++..|..|.+++..| -       ....+   +-+++++.+++ +++..++++|+-|+.++-.-+ 
T Consensus        93 --avNti~kDl~d~N~~iR~~AlR~ls~l-~-------~~el~---~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld-  158 (757)
T COG5096          93 --AVNTIQKDLQDPNEEIRGFALRTLSLL-R-------VKELL---GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD-  158 (757)
T ss_pred             --HHHHHHhhccCCCHHHHHHHHHHHHhc-C-------hHHHH---HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC-
Confidence              477778888899999999988888777 2       23443   24678899999 456679999999999987543 


Q ss_pred             hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC
Q 015728          266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI  307 (401)
Q Consensus       266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~  307 (401)
                       +....+.|.+..+..++.   +.++.+..+|+.+|..+...
T Consensus       159 -~~l~~~~g~~~~l~~l~~---D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         159 -KDLYHELGLIDILKELVA---DSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -HhhhhcccHHHHHHHHhh---CCCchHHHHHHHHHHHhchh
Confidence             344558899999999998   78999999999999988653

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.47  E-value=0.088  Score=38.29  Aligned_cols=64  Identities=13%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728          250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI  315 (401)
Q Consensus       250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~  315 (401)
                      .+.|++|+.++++.+.....+-+.++|+.++++..+  .+.-.++.-|..+|..++...++...+.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~--s~v~siRGT~fy~Lglis~T~~G~~~L~   67 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN--SPVLSIRGTCFYVLGLISSTEEGAEILD   67 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh--CCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence            688999999999999888888889999999999986  6677899999999999999999988774

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.46  E-value=1.6  Score=39.38  Aligned_cols=155  Identities=13%  Similarity=0.114  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcccC
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLNEE  187 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~~~  187 (401)
                      +.....|+..|+-++++.+ .|..+.++..--.|-.+|..++..   ....-.+-.+++ +++.|. .++.+....+...
T Consensus        93 snRVcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~---r~fEyLRLtsLG-VIgaLvk~dd~eVi~fLl~T  167 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKS---RPFEYLRLTSLG-VIGALVKNDDQEVIRFLLTT  167 (293)
T ss_pred             cchHHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccC---CchHHHhHHHHH-HHHHHHhcCcHHHHHHHHHh
Confidence            3456778888887777654 777777776444444455333221   112446677777 665555 4444555566688


Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-------hHHHHHHHHHc-c-CCchhHHHHHHHHH
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-------DRLLREIISLV-H-HNSEASDAGVRAFS  258 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-------~g~i~~Lv~lL-~-~~~~~~~~a~~aL~  258 (401)
                      +.||..++.+.+|+...|.-|+.++..+ =.++   ..-..|+..       .-.+..++.-| + ++..+.+++.++..
T Consensus       168 eIVPlCLrime~GSelSKtvA~fIlqKI-lldD---~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYl  243 (293)
T KOG3036|consen  168 EIVPLCLRIMESGSELSKTVATFILQKI-LLDD---VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYL  243 (293)
T ss_pred             hhHHHHHHHHhcccHHHHHHHHHHHHHH-hhcc---ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999998 4443   222222211       11223333333 3 45679999999999


Q ss_pred             HhcCCCchhHHHHh
Q 015728          259 ALCSTETNRKTLVQ  272 (401)
Q Consensus       259 ~Ls~~~~n~~~iv~  272 (401)
                      +|+.++..|..+..
T Consensus       244 rLsdnprar~aL~~  257 (293)
T KOG3036|consen  244 RLSDNPRARAALRS  257 (293)
T ss_pred             HhcCCHHHHHHHHh
Confidence            99999877766543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.44  E-value=3.1  Score=43.03  Aligned_cols=256  Identities=11%  Similarity=0.093  Sum_probs=133.1

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE  187 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~  187 (401)
                      ++-...-|+..+.+.-..  ++++.+.     +-+-++|.|++..      .-++..|+-|+|+.+-..+    .++.-.
T Consensus       124 n~~fv~LAL~~I~niG~r--e~~ea~~-----~DI~KlLvS~~~~------~~vkqkaALclL~L~r~sp----Dl~~~~  186 (938)
T KOG1077|consen  124 NPTFVCLALHCIANIGSR--EMAEAFA-----DDIPKLLVSGSSM------DYVKQKAALCLLRLFRKSP----DLVNPG  186 (938)
T ss_pred             CcHHHHHHHHHHHhhccH--hHHHHhh-----hhhHHHHhCCcch------HHHHHHHHHHHHHHHhcCc----cccChh
Confidence            445666677777766533  2344442     2233778787764      4577777777999776433    234233


Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC-----------chhHHHHHHH
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN-----------SEASDAGVRA  256 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-----------~~~~~~a~~a  256 (401)
                      +....++.+|+..+..+...++..+..|+...+  +++|..+..+.+-+.-++..-..+           +=++...+++
T Consensus       187 ~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p--~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl  264 (938)
T KOG1077|consen  187 EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP--ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL  264 (938)
T ss_pred             hHHHHHHHHhCccccceeeehHHHHHHHHHcCC--HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence            578899999988777777777778877744333  366666654333333333322111           1156666666


Q ss_pred             HHHhcC--CCchhHHHHhcCcHHHHHHHHHhhccccchHHH-HHHHH----HHHHhCC-HhhHHHHHhCCCcHHHHHHHH
Q 015728          257 FSALCS--TETNRKTLVQEGAINGLIAYISNALTRERSLAA-IAMAR----IEQLLAI-ENSKDALINNPNGVYALVKMV  328 (401)
Q Consensus       257 L~~Ls~--~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~-~a~~~----L~~La~~-~~~~~~~~~~~g~i~~Lv~~l  328 (401)
                      |.++-.  ++.+|.++.+  +...++...+.. ..+..+++ +|-.+    .-+|+.+ +.....+.   .++..|-+ +
T Consensus       265 Lq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~-~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~---~~~~~Lg~-f  337 (938)
T KOG1077|consen  265 LQIYPTPEDPSTRARLNE--VLERILNKAQEP-PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS---RAVNQLGQ-F  337 (938)
T ss_pred             HHhCCCCCCchHHHHHHH--HHHHHHhccccC-ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH---HHHHHHHH-H
Confidence            666643  2234544433  222222222211 01112221 11111    1122222 22222222   24455555 3


Q ss_pred             HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          329 FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       329 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +.+.+...+--|+.-++.|+.. +.....+..+  ....+..|+...+-..|++|..+|+.++.
T Consensus       338 ls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD  398 (938)
T KOG1077|consen  338 LSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD  398 (938)
T ss_pred             hhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence            4455555666677766666654 2333333333  55666666644466677777777776654

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.012  Score=55.98  Aligned_cols=49  Identities=18%  Similarity=0.485  Sum_probs=39.9

Q ss_pred             CCCcccccccccccC---CceEcCccccccHHhHHHHHHcCC--CCCCCCcccC
Q 015728            9 IPHLFRCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAGN--LTCPVTMQTL   57 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~~--~~CP~c~~~~   57 (401)
                      .+.-|.|||-.+--.   .|+.+.|||..|+..+.+....|.  +.||.|....
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            456789999777543   488899999999999999888776  8899996543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.23  Score=50.67  Aligned_cols=173  Identities=16%  Similarity=0.166  Sum_probs=118.5

Q ss_pred             CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhh--hccc--CCchHHHHHHhhcCCHHHHHHHHHHH
Q 015728          137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLN--LLNE--ESKMESFIVLFEHGSCSIKKRLCHLV  212 (401)
Q Consensus       137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~--~v~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L  212 (401)
                      .++|.|..+|.+++..        .+|-|.. +|..++.+..+.-+  ...+  .-.||.++.+.+++++..|..|...+
T Consensus       128 elLp~L~~~L~s~d~n--------~~EgA~~-AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cv  198 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYN--------TCEGAFG-ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCV  198 (885)
T ss_pred             hHHHHHHHHhcCCccc--------ccchhHH-HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhh
Confidence            3689999999998865        7888999 88888855443211  1111  12589999999999999999998888


Q ss_pred             HHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHhhccc
Q 015728          213 EVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISNALTR  289 (401)
Q Consensus       213 ~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~  289 (401)
                      -.+ -..    .....+......++.|..+- +.+++++++...+|..|-.....  +++-  .++|+.+++.-+   +.
T Consensus       199 Nq~-i~~----~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tq---d~  268 (885)
T KOG2023|consen  199 NQF-III----QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQ---DV  268 (885)
T ss_pred             hhe-eec----CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHcc---Cc
Confidence            766 222    22333333345667777766 45677999999999988743222  2222  457777777777   67


Q ss_pred             cchHHHHHHHHHHHHhCCHhhHHHHHhC-CCcHHHHHHHH
Q 015728          290 ERSLAAIAMARIEQLLAIENSKDALINN-PNGVYALVKMV  328 (401)
Q Consensus       290 ~~~~~~~a~~~L~~La~~~~~~~~~~~~-~g~i~~Lv~~l  328 (401)
                      ++.+.-.|+.....+|..+.-+..+... ...||.|++-|
T Consensus       269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence            7788889999999999988555544311 13567776643

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=95.35  E-value=0.017  Score=46.31  Aligned_cols=50  Identities=18%  Similarity=0.351  Sum_probs=42.4

Q ss_pred             CcccccccccccCCceEc----CccccccHHhHHHHHHc--CCCCCCCCcccCCCC
Q 015728           11 HLFRCPISLDLFTDPVTL----CTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDP   60 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~----~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~~   60 (401)
                      .-+.|.||++...++..+    .||.+.|..|.-..|+.  -.+.||+|+.++...
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            467899999999988875    49999999999998885  357899999988754

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=95.29  E-value=0.0073  Score=57.01  Aligned_cols=46  Identities=20%  Similarity=0.297  Sum_probs=38.0

Q ss_pred             cccccccccCCceEcCccccccHHhHHHHHHc-CCCCCCCCcccCCC
Q 015728           14 RCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA-GNLTCPVTMQTLHD   59 (401)
Q Consensus        14 ~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~~~   59 (401)
                      .|.||-+-=+|=.+-+|||-.|..|+..|... +..+||-||..+.-
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            58999997777555689999999999999865 37889999987653

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.28  E-value=0.01  Score=54.87  Aligned_cols=49  Identities=14%  Similarity=0.202  Sum_probs=35.9

Q ss_pred             CcccccccccccCCc--eE--cCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728           11 HLFRCPISLDLFTDP--VT--LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        11 ~~~~C~iC~~~~~~P--v~--~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      +++ ||+|.+.|..-  -.  .+||...|+.|+......-...||.||......
T Consensus        14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            344 99999977422  12  369999999998776654456799999887654

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.21  E-value=0.0041  Score=63.42  Aligned_cols=48  Identities=21%  Similarity=0.385  Sum_probs=39.1

Q ss_pred             CcccccccccccCCceE---cCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           11 HLFRCPISLDLFTDPVT---LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~---~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ..-+||+|..-+.+...   ..|+|.||..|+..|-+ ...+||.|+..|..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence            34579999988887665   36999999999999877 67789999988754

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.18  E-value=0.0079  Score=62.69  Aligned_cols=49  Identities=16%  Similarity=0.421  Sum_probs=37.9

Q ss_pred             CCcccccccccccC-----CceEc--CccccccHHhHHHHHHc-CCCCCCCCcccCC
Q 015728           10 PHLFRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAA-GNLTCPVTMQTLH   58 (401)
Q Consensus        10 ~~~~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~~   58 (401)
                      ...-.|+||-.++.     =|-..  .|.|-|..+|+.+|++. +..+||.||..++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            34457999988775     24333  49999999999999997 5688999997664

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.16  E-value=0.013  Score=39.53  Aligned_cols=47  Identities=13%  Similarity=-0.017  Sum_probs=37.1

Q ss_pred             CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728           11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      .+..|-.|...-...+.++|||..|..|..-+   +-..||.|+.++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD   52 (55)
T ss_pred             cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence            45567788888888889999999999986532   345699999988654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.06  E-value=3.2  Score=39.39  Aligned_cols=196  Identities=15%  Similarity=0.166  Sum_probs=105.4

Q ss_pred             hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhc-cchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCC---C
Q 015728          190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLG-KDDRLLREIISLV-HHNSEASDAGVRAFSALCST---E  264 (401)
Q Consensus       190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~-~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~---~  264 (401)
                      +.-.+..+...+...|+.+...|.++....-    ....+. ....++..+.+.+ ++..+-+..|++++.-|+..   .
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~----~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRY----LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence            4444555666678888888888887723221    111221 1123556667777 45555667777777777744   3


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh---CC-HhhHHHHHhCCCcHHHHHHHHHhcCC-------
Q 015728          265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL---AI-ENSKDALINNPNGVYALVKMVFRVSD-------  333 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La---~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~-------  333 (401)
                      +....+.+ ...|+|...+... +.....+..++.+|..++   .. .+.-...+.--..|-.+.. +...++       
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~-s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~-~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDS-SASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSI-LKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh-cCcCCCcccccCC
Confidence            45556665 4889999999841 122344445554555443   22 2222211110011111111 111111       


Q ss_pred             --hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728          334 --HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       334 --~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  393 (401)
                        +.+.-.|+.+-.-|...-+...-.-.-...++.|..+|+++ +..+|-.|...|-+|-+.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence              23444555554444433333222233455699999999887 889999999888888663

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=94.98  E-value=0.024  Score=41.03  Aligned_cols=44  Identities=27%  Similarity=0.489  Sum_probs=32.6

Q ss_pred             cccccccccC----CceEc-CccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           14 RCPISLDLFT----DPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        14 ~C~iC~~~~~----~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      .||-|+.-+.    -|+.- -|.|.|-..||.+|+.. ...||.+++...
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence            4666666442    14444 49999999999999995 667999988754

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.89  E-value=0.2  Score=43.97  Aligned_cols=119  Identities=12%  Similarity=0.126  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhhcCCchhhhhhcc---------------cCCchHHHHHHhhcC------CHHHHHHHHHHHHHHHhcc
Q 015728          161 FVEESLSCVQKLLLVGETESLNLLN---------------EESKMESFIVLFEHG------SCSIKKRLCHLVEVIISSS  219 (401)
Q Consensus       161 ~~~~a~~~~L~~l~~~~~~~~~~v~---------------~~g~i~~Lv~~L~~~------~~~~~~~aa~~L~~l~s~~  219 (401)
                      ....++. +|.||+..+.....++.               +...+..|+..+..|      ........+.++.|+ +..
T Consensus        11 ~adl~~M-LLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl-S~~   88 (192)
T PF04063_consen   11 LADLACM-LLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL-SQL   88 (192)
T ss_pred             hHHHHHH-HHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh-cCC
Confidence            4556666 88999877766554431               122577788776551      234557888899999 877


Q ss_pred             cchhhhhhhhccchHH---HHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHh---cCcHHHHHHHHH
Q 015728          220 HETKELCCKLGKDDRL---LREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQ---EGAINGLIAYIS  284 (401)
Q Consensus       220 ~~~~~~~~~i~~~~g~---i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~---~G~v~~Lv~lL~  284 (401)
                      .   +.|..+......   |..|+...+ .+..-++-++.+|+|+|...+....+..   .+++|.|+--|.
T Consensus        89 ~---~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   89 P---EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             H---HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            6   888888765433   444444443 4445778899999999999988888876   356777766666

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.87  E-value=0.44  Score=49.39  Aligned_cols=257  Identities=11%  Similarity=0.110  Sum_probs=138.5

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE  186 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~  186 (401)
                      .++..++.|+-.+.++-..   +.+.....|.++.|..++.+.+        +.|..+|+. +|..+...+.+.......
T Consensus       133 ~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~--------p~VVAnAla-aL~eI~e~~~~~~~~~l~  200 (734)
T KOG1061|consen  133 DDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSN--------PMVVANALA-ALSEIHESHPSVNLLELN  200 (734)
T ss_pred             CChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCC--------chHHHHHHH-HHHHHHHhCCCCCccccc
Confidence            4566777777777776554   4466778999999999998555        559999999 888776443321111112


Q ss_pred             CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728          187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                      ...+..++..|...+.=.|.   .+|..+ +...+.++     .++..++..+..-| +.+..++-.+..++.++.....
T Consensus       201 ~~~~~~lL~al~ec~EW~qi---~IL~~l-~~y~p~d~-----~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~  271 (734)
T KOG1061|consen  201 PQLINKLLEALNECTEWGQI---FILDCL-AEYVPKDS-----REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK  271 (734)
T ss_pred             HHHHHHHHHHHHHhhhhhHH---HHHHHH-HhcCCCCc-----hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH
Confidence            22344444444333332332   344444 43321111     12234555566656 4566677888888888876555


Q ss_pred             hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHh-----hHHHHHhCCC-------------------c
Q 015728          266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IEN-----SKDALINNPN-------------------G  320 (401)
Q Consensus       266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~-----~~~~~~~~~g-------------------~  320 (401)
                      +....+-...-++|+-+++   ..+ +.+-.|+.=+..+-. .++     .+..++....                   -
T Consensus       272 ~~~~~~~~K~~~pl~tlls---~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n  347 (734)
T KOG1061|consen  272 QVNELLFKKVAPPLVTLLS---SES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN  347 (734)
T ss_pred             HHHHHHHHHhcccceeeec---ccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH
Confidence            5555555557778888877   333 443333333332221 111     1111111111                   1


Q ss_pred             HHHHHHHHH---hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728          321 VYALVKMVF---RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       321 i~~Lv~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  395 (401)
                      ++.++.-+.   ..-+......+++++.+++..-++    .  .+.|+.|+++++.+ .+.+-+.+...++.+-+++|
T Consensus       348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~----~--~~cv~~lLell~~~-~~yvvqE~~vvi~dilRkyP  418 (734)
T KOG1061|consen  348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ----S--NDCVSILLELLETK-VDYVVQEAIVVIRDILRKYP  418 (734)
T ss_pred             HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh----h--hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhcCC
Confidence            111111111   112344555677777776543211    1  77888888888876 66666666667776666554

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.85  E-value=0.52  Score=41.36  Aligned_cols=102  Identities=12%  Similarity=0.069  Sum_probs=78.0

Q ss_pred             ccchHHHHHHHHHHHHhCCHhhHHHHHh---------------CCCcHHHHHHHHHh-----cCChhHHHHHHHHHHHHh
Q 015728          289 RERSLAAIAMARIEQLLAIENSKDALIN---------------NPNGVYALVKMVFR-----VSDHEGSENAINSLMMIC  348 (401)
Q Consensus       289 ~~~~~~~~a~~~L~~La~~~~~~~~~~~---------------~~g~i~~Lv~~l~~-----~~~~~~~~~a~~~L~~l~  348 (401)
                      .+......++++|+||+...++...+..               ....+..|++.+.+     .....--++.+.+|.|++
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            4456778899999999999888875541               12367888886666     123356778999999999


Q ss_pred             cCCHHHHHHHHH--cCc--HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          349 CDSLQAREEAIC--AGV--LTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       349 ~~~~~~~~~~~~--~g~--v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +. ++.|+-+++  .+.  +..|+.++++. +..-|+-++.++|.++=
T Consensus        87 ~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccF  132 (192)
T PF04063_consen   87 QL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCF  132 (192)
T ss_pred             CC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhc
Confidence            87 678877774  344  88899999888 89999999999998764

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.045  Score=58.21  Aligned_cols=74  Identities=31%  Similarity=0.488  Sum_probs=66.2

Q ss_pred             CCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCC
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGG   80 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~   80 (401)
                      ..++|++|.=|+...+|+|||.+| .|++.|+.=|.+++- ...+=|.||.+++...+.+|..++..|+.|....+
T Consensus       864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlL-s~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~  938 (943)
T KOG2042|consen  864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLL-SDCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR  938 (943)
T ss_pred             hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHh-cCCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence            345899999999999999999998 999999999999888 45667999999999999999999999999977653

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=3.7  Score=42.64  Aligned_cols=118  Identities=13%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 015728          139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISS  218 (401)
Q Consensus       139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~  218 (401)
                      .+-++.||.++.+.        ++..|+. +|..+-...++.   +  ..++|.|+..|..+++.++..|+.+++.| +.
T Consensus       146 a~Dv~tLL~sskpY--------vRKkAIl-~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICEL-Ar  210 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPY--------VRKKAIL-LLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICEL-AR  210 (877)
T ss_pred             HHHHHHHHhcCchH--------HHHHHHH-HHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHH-Hh
Confidence            34566777766654        7777877 555444333332   2  24689999999999999999999999999 65


Q ss_pred             ccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHH
Q 015728          219 SHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYIS  284 (401)
Q Consensus       219 ~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~  284 (401)
                      .++    +..+    .+-|.+.++|  +.+.=+...-.....+|+..+ .-.++     .+|+|..++.
T Consensus       211 KnP----knyL----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~  266 (877)
T KOG1059|consen  211 KNP----QNYL----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELME  266 (877)
T ss_pred             hCC----cccc----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHH
Confidence            432    2333    1237777777  333334555556666666432 22222     4556666654

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.036  Score=52.34  Aligned_cols=64  Identities=25%  Similarity=0.388  Sum_probs=50.1

Q ss_pred             cccccccccccC------CceEcCccccccHHhHHHHHHcCCCCCCCCcccCC--C---CCCCCcHHHHHHHHHH
Q 015728           12 LFRCPISLDLFT------DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH--D---PSIVPNHTLRHLINQW   75 (401)
Q Consensus        12 ~~~C~iC~~~~~------~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~--~---~~~~~n~~l~~~i~~~   75 (401)
                      .+.|-||.+.|.      .|..+.|||++|..|+..........||.||.+..  .   +.+..|+.+...++..
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            457999998775      37778899999999999888766777999998842  2   2466788877777776

>PRK14707 hypothetical protein; Provisional

Probab=94.48  E-value=11  Score=44.14  Aligned_cols=282  Identities=16%  Similarity=0.140  Sum_probs=170.4

Q ss_pred             CCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728           89 LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC  168 (401)
Q Consensus        89 ~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~  168 (401)
                      +.+.+.+.++...++.=.+ ...+..|+..|.......+.-+..+ +..+|...++.|....+       ..+++.++..
T Consensus       201 ~~~~q~ia~~lNa~sKWp~-~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~-------~~~C~~a~~~  271 (2710)
T PRK14707        201 AMDAQGVATVLNALCKWPD-TPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWAD-------TPVCAAAASA  271 (2710)
T ss_pred             ccchHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCC-------chHHHHHHHH
Confidence            3556777777666654433 4467788888888887777666666 55567777777744332       3467777763


Q ss_pred             HHHhhcCCchhhhhhcccCCchHHHHHHhhc-CCHH-HHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--
Q 015728          169 VQKLLLVGETESLNLLNEESKMESFIVLFEH-GSCS-IKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--  244 (401)
Q Consensus       169 ~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~-~~~~-~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--  244 (401)
                      +-..+. ++...++.+ .+..+...+.-|+. .+.. ++..|..+-..| ..+.   +.+..+-. .|. .-.+.-|+  
T Consensus       272 lA~rl~-~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl-~~d~---~l~~~~~~-~~~-~~~LNalsKW  343 (2710)
T PRK14707        272 LAERLV-DDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERL-ADDP---ELCKALNA-RGL-STALNALSKW  343 (2710)
T ss_pred             HHHHHh-hhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH-hccH---hhhhccch-HHH-HHHHHHhhcC
Confidence            445555 444445555 44556666666643 3444 444444455556 5544   66666533 343 44444453  


Q ss_pred             CCchhHHHHHHHHH-HhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHH-HHhCCHhhHHHHHhCCCcHH
Q 015728          245 HNSEASDAGVRAFS-ALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIE-QLLAIENSKDALINNPNGVY  322 (401)
Q Consensus       245 ~~~~~~~~a~~aL~-~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~-~La~~~~~~~~~~~~~g~i~  322 (401)
                      .+...-..|+.+|. .|+.+++-+..+--.| |...+--|+.  =++......|+..|+ .|..+++-+..+  +.-+|.
T Consensus       344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsK--Wp~~~~c~~aa~~LA~~l~~d~~l~~~~--~~Q~va  418 (2710)
T PRK14707        344 PDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSK--WPDTPVCAAAASALAEHVVDDLELRKGL--DPQGVS  418 (2710)
T ss_pred             CCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhc--CCCchHHHHHHHHHHHHhccChhhhhhc--chhhHH
Confidence            34444555555555 5777777776665444 4444444442  456666667766666 677788888888  566788


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          323 ALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       323 ~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .++..+.+=.+..+-..++..|..-..++.+.++.+--.++...|=.+-+=+.++.-++.|..+...|..
T Consensus       419 n~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~  488 (2710)
T PRK14707        419 NALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAH  488 (2710)
T ss_pred             HHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcc
Confidence            8888777666767788888888776666777776665555444443333334355666555555555543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.37  E-value=3.9  Score=42.69  Aligned_cols=238  Identities=13%  Similarity=0.095  Sum_probs=132.0

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE  187 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~  187 (401)
                      ....|..-+..|+..+..++.-+...     |..+..+|.+.++.        +..+|+. .|..|+.+....+      
T Consensus       219 ~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssa--------V~fEaa~-tlv~lS~~p~alk------  278 (948)
T KOG1058|consen  219 NDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSA--------VIFEAAG-TLVTLSNDPTALK------  278 (948)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCch--------hhhhhcc-eEEEccCCHHHHH------
Confidence            45678888999999999888665555     77889999888755        8888888 7777774432222      


Q ss_pred             CchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728          188 SKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       188 g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                      .+...+++++.. ++-.++.....-|..+ ..     .++..+   +|.+--.+++| ..+.++++.++.....|.....
T Consensus       279 ~Aa~~~i~l~~kesdnnvklIvldrl~~l-~~-----~~~~il---~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN  349 (948)
T KOG1058|consen  279 AAASTYIDLLVKESDNNVKLIVLDRLSEL-KA-----LHEKIL---QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN  349 (948)
T ss_pred             HHHHHHHHHHHhccCcchhhhhHHHHHHH-hh-----hhHHHH---HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence            123455555533 2334454444445445 31     223333   36666667777 4677888888888888775433


Q ss_pred             hhHHHHhcCcHHHHHH-HHHhh---ccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          266 NRKTLVQEGAINGLIA-YISNA---LTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       266 n~~~iv~~G~v~~Lv~-lL~~~---~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                       ...++     ..|-+ +..++   ++.+..-++.-+.+|+..+.. ++...      .+|+.|++. +.+.++......
T Consensus       350 -vediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aa------tvV~~ll~f-isD~N~~aas~v  416 (948)
T KOG1058|consen  350 -VEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAA------TVVSLLLDF-ISDSNEAAASDV  416 (948)
T ss_pred             -HHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHH------HHHHHHHHH-hccCCHHHHHHH
Confidence             22211     11111 11211   122334566677777766643 33222      347788884 455554333333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +..+...-...++.|     ...+..|++-+..=-+.+.-+.|.|++..-++
T Consensus       417 l~FvrE~iek~p~Lr-----~~ii~~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  417 LMFVREAIEKFPNLR-----ASIIEKLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             HHHHHHHHHhCchHH-----HHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence            333332222222333     44455555544221255777788888776655

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=94.27  E-value=0.63  Score=48.17  Aligned_cols=146  Identities=10%  Similarity=0.169  Sum_probs=92.8

Q ss_pred             hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhh---hhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCc
Q 015728          190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELC---CKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~---~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                      +...++.|++.++.+|++|+.++..| +..-   ..|   +.++. -|  -.|...|. ..+++.-..+.||+.+.....
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~l-a~Vl---ktc~ee~~m~~-lG--vvLyEylgeeypEvLgsILgAikaI~nvig  873 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSL-AKVL---KTCGEEKLMGH-LG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIG  873 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHH-HHHH---HhccHHHHHHH-hh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence            45556788899999999999999998 5432   222   12222 24  24555563 455666666666665553322


Q ss_pred             hhHHH-HhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-Hh---hHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          266 NRKTL-VQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-EN---SKDALINNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       266 n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~---~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                      --+.. =-.|.+|.|..+|+   +....++++....+..+|.. ++   .|..+.    ..-.|++ +++......+.+|
T Consensus       874 m~km~pPi~dllPrltPILk---nrheKVqen~IdLvg~IadrgpE~v~aREWMR----IcfeLle-lLkahkK~iRRaa  945 (1172)
T KOG0213|consen  874 MTKMTPPIKDLLPRLTPILK---NRHEKVQENCIDLVGTIADRGPEYVSAREWMR----ICFELLE-LLKAHKKEIRRAA  945 (1172)
T ss_pred             ccccCCChhhhcccchHhhh---hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH----HHHHHHH-HHHHHHHHHHHHH
Confidence            11111 12578999999999   56788999999999999964 32   333332    3445777 4555555778888


Q ss_pred             HHHHHHHhcC
Q 015728          341 INSLMMICCD  350 (401)
Q Consensus       341 ~~~L~~l~~~  350 (401)
                      +..+..|+..
T Consensus       946 ~nTfG~Iaka  955 (1172)
T KOG0213|consen  946 VNTFGYIAKA  955 (1172)
T ss_pred             HhhhhHHHHh
Confidence            8877776654

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.21  E-value=0.032  Score=52.49  Aligned_cols=49  Identities=20%  Similarity=0.176  Sum_probs=36.9

Q ss_pred             CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      +.+.+...-|-||.+-..+.+.+||||..|  |..-..  ....||+|++.+.
T Consensus       299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR  347 (355)
T ss_pred             ccccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence            334556678999999999988899999877  664432  3455999998654

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.17  E-value=0.058  Score=36.15  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=21.6

Q ss_pred             ccccccccccCCceEc-Ccccccc--HHhHHHH-HHcCCCCCCCCccc
Q 015728           13 FRCPISLDLFTDPVTL-CTGQTYD--RSSIEKW-LAAGNLTCPVTMQT   56 (401)
Q Consensus        13 ~~C~iC~~~~~~Pv~~-~Cgh~fc--~~Ci~~~-~~~~~~~CP~c~~~   56 (401)
                      +.||+....+..|+.- .|.|.-|  ..-.... ...+...||.|+++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            6899999999999985 7999644  3222222 22356789999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.16  E-value=1  Score=47.02  Aligned_cols=225  Identities=11%  Similarity=0.045  Sum_probs=140.8

Q ss_pred             HhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH-hhcCCchhhhhhcccCCchHHHHHHhhcCC
Q 015728          123 LRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK-LLLVGETESLNLLNEESKMESFIVLFEHGS  201 (401)
Q Consensus       123 ~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~-~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~  201 (401)
                      +.....-|...++.|+...|+.+.....+.        ...+... +|. .+......      ....++++...++...
T Consensus       490 aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~--------akl~~~~-aL~~~i~f~~~~------~~~v~~~~~s~~~~d~  554 (748)
T KOG4151|consen  490 AAKEKYERAKKIKPGGYEALLRLGQQQFEE--------AKLKWYH-ALAGKIDFPGER------SYEVVKPLDSALHNDE  554 (748)
T ss_pred             hhhhHHhcCccccccHHHHHHHHHHHhchH--------HHHHHHH-HHhhhcCCCCCc------hhhhhhhhcchhhhhH
Confidence            334444567777899999999998776543        5555555 444 22221111      1234566666654432


Q ss_pred             H-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCch-hHHHHh-cCcHH
Q 015728          202 C-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETN-RKTLVQ-EGAIN  277 (401)
Q Consensus       202 ~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n-~~~iv~-~G~v~  277 (401)
                      . -..-.+..++.|| +..+.  ..|..|....+ ++.+-.++ .+++..+.+++..+.||...+.- ...+++ ...++
T Consensus       555 ~~~en~E~L~altnL-as~s~--s~r~~i~ke~~-~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~  630 (748)
T KOG4151|consen  555 KGLENFEALEALTNL-ASISE--SDRQKILKEKA-LGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLK  630 (748)
T ss_pred             HHHHHHHHHHHhhcc-cCcch--hhHHHHHHHhc-chhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCch
Confidence            2 1224666788888 55442  56666665432 34333334 66777999999999999987774 445566 55788


Q ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH-HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHH
Q 015728          278 GLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA-LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQARE  356 (401)
Q Consensus       278 ~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~-~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  356 (401)
                      .....+.   ..+....-.+++++..+....++... +......-..++. +..+.+...+...+....++...+.+..+
T Consensus       631 ~w~~~~e---~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~-~i~~~~~~~qhrgl~~~ln~~~~~~ei~~  706 (748)
T KOG4151|consen  631 LWNLNLE---VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVR-AIQDEDDEIQHRGLVIILNLFEALFEIAE  706 (748)
T ss_pred             HHHHHHH---hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHH-hhcCchhhhhhhhhhhhhhHHHHHHHHHH
Confidence            8888887   55556666666667655544443333 3334455667777 45666778888888888887766667777


Q ss_pred             HHHHcCcHHHHHHH
Q 015728          357 EAICAGVLTQLLLL  370 (401)
Q Consensus       357 ~~~~~g~v~~L~~l  370 (401)
                      .+.....++.+..+
T Consensus       707 ~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  707 KIFETEVMELLSGL  720 (748)
T ss_pred             HhccchHHHHHHHH
Confidence            77777766666554

>PRK14707 hypothetical protein; Provisional

Probab=94.16  E-value=15  Score=43.07  Aligned_cols=231  Identities=15%  Similarity=0.129  Sum_probs=131.8

Q ss_pred             hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      ++.++.....|+.-.+ ...+..|+..|..-...++.-++.+- .-.+.-.++-|+...+       ..++..|+..+-.
T Consensus       246 ~q~va~~lN~lsKwp~-~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSKwpd-------~~vc~~Aa~~la~  316 (2710)
T PRK14707        246 PQELGNALNALSKWAD-TPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSKWAD-------LPVCAEAAIALAE  316 (2710)
T ss_pred             hHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhcCCC-------chHHHHHHHHHHH
Confidence            3555555454544333 44677777777766666666677763 3335555555543322       3466666663555


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhhc-C-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--CCc
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFEH-G-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--HNS  247 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~-~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~  247 (401)
                      .|. ++.+..+.+ ++-.+...+.-|+. + +..++..|..+-..+ ..+.   +.+..+.. .|+ ...+.-|+  .+.
T Consensus       317 rl~-~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl-~~d~---~l~~~l~~-q~~-a~~lNalsKWp~~  388 (2710)
T PRK14707        317 RLA-DDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERL-VADP---ELRKDLEP-QGV-SSVLNALSKWPDT  388 (2710)
T ss_pred             HHh-ccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHh-ccCH---hhhcccch-hHH-HHHHhhhhcCCCc
Confidence            665 455555555 55667777877754 3 344554444444456 6665   77887754 354 55555553  455


Q ss_pred             hhHHHHHHHHHH-hcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHH-HHhCCHhhHHHHHhCCCcHHHHH
Q 015728          248 EASDAGVRAFSA-LCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIE-QLLAIENSKDALINNPNGVYALV  325 (401)
Q Consensus       248 ~~~~~a~~aL~~-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~-~La~~~~~~~~~~~~~g~i~~Lv  325 (401)
                      ..-..|+.+|.. |..+.+-+..+--.|+-..|-.+-+   =++..+...++..|+ .|+.+.+-+..+  ++-.|...+
T Consensus       389 ~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsK---WPd~~~C~~aa~~lA~~la~d~~l~~~~--~p~~va~~L  463 (2710)
T PRK14707        389 PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAK---WPDLPICGQAVSALAGRLAHDTELCKAL--DPINVTQAL  463 (2710)
T ss_pred             hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhc---CCcchhHHHHHHHHHHHHhccHHHHhhc--ChHHHHHHH
Confidence            667777777764 6666666766655554444444444   466667777777666 566666766666  444455555


Q ss_pred             HHHHhcCChhHHHHHHHHH
Q 015728          326 KMVFRVSDHEGSENAINSL  344 (401)
Q Consensus       326 ~~l~~~~~~~~~~~a~~~L  344 (401)
                      ..+.+=.+...-..|+..|
T Consensus       464 nalSKWPd~p~c~~aa~~L  482 (2710)
T PRK14707        464 DALSKWPDTPICGQTASAL  482 (2710)
T ss_pred             HHhhcCCCChhHHHHHHHH
Confidence            5444433334444444444

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.15  E-value=8.1  Score=40.18  Aligned_cols=257  Identities=16%  Similarity=0.182  Sum_probs=144.9

Q ss_pred             HhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchh
Q 015728          100 HSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE  179 (401)
Q Consensus       100 ~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~  179 (401)
                      ++|.++++..-.+..|+-+|.++-+.+|+-   +...+-+..++.+|.+.+-.        +.-.+.. ++..|+..+++
T Consensus       153 KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~g--------v~ta~~s-Li~~lvk~~p~  220 (938)
T KOG1077|consen  153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMG--------VVTAATS-LIEALVKKNPE  220 (938)
T ss_pred             HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccc--------eeeehHH-HHHHHHHcCCH
Confidence            667788888888888888999998887742   22235677888888766533        4444444 55555533332


Q ss_pred             -hhhhcccCCchHHHHHHhhc-------------CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--
Q 015728          180 -SLNLLNEESKMESFIVLFEH-------------GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--  243 (401)
Q Consensus       180 -~~~~v~~~g~i~~Lv~~L~~-------------~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--  243 (401)
                       .+..+.  -++..|......             +.+=.+....++|.++ -.-++ ...+..      .++.|=.+|  
T Consensus       221 ~yk~~~~--~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D-~~~r~~------l~evl~~iLnk  290 (938)
T KOG1077|consen  221 SYKTCLP--LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPED-PSTRAR------LNEVLERILNK  290 (938)
T ss_pred             HHhhhHH--HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCC-chHHHH------HHHHHHHHHhc
Confidence             222220  112222222111             2334555566666555 22111 022222      223333333  


Q ss_pred             -cC---Cc-h----hHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728          244 -HH---NS-E----ASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA  313 (401)
Q Consensus       244 -~~---~~-~----~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~  313 (401)
                       ++   +. .    ++-+.+--..+|... ++....+++  ++..|-++|.   +.+..++=.|+..++.|+.+......
T Consensus       291 ~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls---~rE~NiRYLaLEsm~~L~ss~~s~da  365 (938)
T KOG1077|consen  291 AQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLS---HRETNIRYLALESMCKLASSEFSIDA  365 (938)
T ss_pred             cccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhh---cccccchhhhHHHHHHHHhccchHHH
Confidence             21   11 1    222233333455543 334444444  6788888888   56677888899999999987666655


Q ss_pred             HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728          314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  393 (401)
                      +-.+   ....+..|-...+..+++.|+..|..+|..  +..+.+     |.-|++.+.+. +...|+.-.--...|++.
T Consensus       366 vK~h---~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~I-----V~elLqYL~tA-d~sireeivlKvAILaEK  434 (938)
T KOG1077|consen  366 VKKH---QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQI-----VAELLQYLETA-DYSIREEIVLKVAILAEK  434 (938)
T ss_pred             HHHH---HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHH-----HHHHHHHHhhc-chHHHHHHHHHHHHHHHH
Confidence            5322   445555332256778999999999999965  333344     34466766665 777777766656666654


Q ss_pred             h
Q 015728          394 W  394 (401)
Q Consensus       394 ~  394 (401)
                      +
T Consensus       435 y  435 (938)
T KOG1077|consen  435 Y  435 (938)
T ss_pred             h
Confidence            3

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=94.07  E-value=0.014  Score=51.35  Aligned_cols=47  Identities=19%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             Cccccccccc-ccCCceE----cC-ccccccHHhHHHHHHcCCCCCC--CCcccC
Q 015728           11 HLFRCPISLD-LFTDPVT----LC-TGQTYDRSSIEKWLAAGNLTCP--VTMQTL   57 (401)
Q Consensus        11 ~~~~C~iC~~-~~~~Pv~----~~-Cgh~fc~~Ci~~~~~~~~~~CP--~c~~~~   57 (401)
                      .+-.||+|.. .+-.|-.    -| |-|..|.+|+.+.|..|+..||  .|++-+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL   63 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL   63 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence            4568999997 3344432    24 9999999999999999999999  677654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=9.4  Score=40.23  Aligned_cols=212  Identities=15%  Similarity=0.219  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhhcCCchhhhhhcc----------cCCch----HHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhh
Q 015728          160 QFVEESLSCVQKLLLVGETESLNLLN----------EESKM----ESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKEL  225 (401)
Q Consensus       160 ~~~~~a~~~~L~~l~~~~~~~~~~v~----------~~g~i----~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~  225 (401)
                      .+++.|+. +|..+-.+++++.+-|+          ++.++    ..++++|+..+..+|.+|...++.| -..    .|
T Consensus       309 ~Lrvlain-iLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l-vn~----~N  382 (866)
T KOG1062|consen  309 GLRVLAIN-ILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL-VNE----SN  382 (866)
T ss_pred             hHHHHHHH-HHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hcc----cc
Confidence            36777777 66666656655444431          12222    2456788888888999888888888 322    33


Q ss_pred             hhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhc--CCCchhHHH-------------HhcCcHHHHHHHHHhhccc
Q 015728          226 CCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALC--STETNRKTL-------------VQEGAINGLIAYISNALTR  289 (401)
Q Consensus       226 ~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls--~~~~n~~~i-------------v~~G~v~~Lv~lL~~~~~~  289 (401)
                      -.      .++..|+..| +.+.+.+...+.-+..++  ..+++++.|             |...++..++.++.+   +
T Consensus       383 v~------~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~---~  453 (866)
T KOG1062|consen  383 VR------VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIAN---A  453 (866)
T ss_pred             HH------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhc---C
Confidence            33      3456667777 446667777777788777  467776653             344578889999984   2


Q ss_pred             cchHHHHHHHHHHHHh-C------C------------HhhHHHHH-----------hCCCcHHHHHHHHHhc-CChhHHH
Q 015728          290 ERSLAAIAMARIEQLL-A------I------------ENSKDALI-----------NNPNGVYALVKMVFRV-SDHEGSE  338 (401)
Q Consensus       290 ~~~~~~~a~~~L~~La-~------~------------~~~~~~~~-----------~~~g~i~~Lv~~l~~~-~~~~~~~  338 (401)
                      ..+..+.+...|+.-. .      .            +|+-..++           .+..++..|-+.+... ++...+.
T Consensus       454 ~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~  533 (866)
T KOG1062|consen  454 FQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKG  533 (866)
T ss_pred             CcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHH
Confidence            2222222222222111 0      0            11111111           1123555565643333 4567788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          339 NAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       339 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +|+.+|.-|+..-...      ..-|..|+.-....-+...+++|...=-++.+
T Consensus       534 yal~Al~KLSsr~~s~------~~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~  581 (866)
T KOG1062|consen  534 YALTALLKLSSRFHSS------SERIKQLISSYKSSLDTELQQRAVEYNALFAK  581 (866)
T ss_pred             HHHHHHHHHHhhcccc------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            8999998886542211      11233344333333345666666655444433

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=93.92  E-value=0.96  Score=45.93  Aligned_cols=195  Identities=13%  Similarity=0.154  Sum_probs=111.2

Q ss_pred             hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhh-------ccc---------CCchHHHHHHhh
Q 015728          135 QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNL-------LNE---------ESKMESFIVLFE  198 (401)
Q Consensus       135 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~-------v~~---------~g~i~~Lv~~L~  198 (401)
                      .+|.+...+..|-...-.      ....+.-...++..+...+..-.-+       ++.         +-.|+..+..|+
T Consensus       541 ~a~~vsri~~~lg~~~~d------Erleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~  614 (975)
T COG5181         541 NAGLVSRIFSRLGRLGFD------ERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLR  614 (975)
T ss_pred             hhHHHHHHHHhccccccc------HHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhc
Confidence            567888888887432211      2334444444555554322211111       111         123556667888


Q ss_pred             cCCHHHHHHHHHHHHHHHhcccchhhhhh---hhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHH-Hhc
Q 015728          199 HGSCSIKKRLCHLVEVIISSSHETKELCC---KLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTL-VQE  273 (401)
Q Consensus       199 ~~~~~~~~~aa~~L~~l~s~~~~~~~~~~---~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~i-v~~  273 (401)
                      +..+.+|++|+.+...| +..-   .++.   .+... |  ..|..-|. ..+++.-..+.|++.+.+...-+.-- =-.
T Consensus       615 ~k~p~vR~~aadl~~sl-~~vl---k~c~e~~~l~kl-g--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~  687 (975)
T COG5181         615 SKPPDVRIRAADLMGSL-AKVL---KACGETKELAKL-G--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPIS  687 (975)
T ss_pred             CCCccHHHHHHHHHHHH-HHHH---HhcchHHHHHHH-h--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchh
Confidence            99999999999998888 4321   1111   11111 2  23334443 34567777777777665444322111 126


Q ss_pred             CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-h---hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728          274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-N---SKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC  349 (401)
Q Consensus       274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~---~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~  349 (401)
                      |++|.|..+|+   +....++++..+.+..+|... +   -|..+.    ..-.|++ ++++-+.+.+.+|...+..|+.
T Consensus       688 ~ilP~ltPILr---nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR----IcfeLvd-~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         688 GILPSLTPILR---NKHQKVVANTIALVGTICMNSPEYIGVREWMR----ICFELVD-SLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             hccccccHhhh---hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH----HHHHHHH-HHHHhhHHHHHhhhhhhhhHHh
Confidence            89999999999   567788899888888888643 2   233332    2345777 4555555778888777766654


Q ss_pred             C
Q 015728          350 D  350 (401)
Q Consensus       350 ~  350 (401)
                      .
T Consensus       760 a  760 (975)
T COG5181         760 A  760 (975)
T ss_pred             h
Confidence            3

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.91  E-value=0.023  Score=40.74  Aligned_cols=45  Identities=27%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             cccccccccCC-ceEc-CccccccHHhHHHHHHc--CCCCCCCCcccCC
Q 015728           14 RCPISLDLFTD-PVTL-CTGQTYDRSSIEKWLAA--GNLTCPVTMQTLH   58 (401)
Q Consensus        14 ~C~iC~~~~~~-Pv~~-~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~   58 (401)
                      .||-|.-.=.+ |... .|.|.|-..||.+|+..  ....||.||+.+.
T Consensus        33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            44444433322 5555 49999999999999985  3467999998754

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.89  E-value=0.034  Score=51.88  Aligned_cols=48  Identities=17%  Similarity=0.083  Sum_probs=38.6

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      .++-.||||----...|..||+|.-|..||.+++. ..+.|-.|+..+.
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLM-NCKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence            36778999987666677789999999999999988 5667888866543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.78  E-value=0.55  Score=40.82  Aligned_cols=146  Identities=19%  Similarity=0.216  Sum_probs=86.8

Q ss_pred             cHHHHHHHHHHHHhCCCCCCCCCC--C--CChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCCh
Q 015728           65 NHTLRHLINQWLQMGGGQHFDPNY--L--ATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFL  139 (401)
Q Consensus        65 n~~l~~~i~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i  139 (401)
                      ...-..+|..+...+......+.+  .  ........+++.|.+...+    ...+..|+...+..+.. -+.+++.||+
T Consensus        34 ~ekKw~li~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~L~~~~~~----~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~  109 (187)
T PF06371_consen   34 PEKKWQLIQQHRQKQAKHSSSSSKSKSKASAKSSPEWYIKKLKSRPST----SKILKSLRVSLRTNPISWVQEFLELGGL  109 (187)
T ss_dssp             HHHHHHHHHHHHHH-----------------CHHHHHHHHHHTTT--H----HHHHHHHHHHHHHS-HHHHHHH-HHHHH
T ss_pred             HHHHHHHHHhHHHhccccchhhhhhhhhhhhhhhHHHHHHHHHccCcc----HHHHHHHHHHhccCCchHHHHhccCCCH
Confidence            334456666666655322211121  1  1124555566666544322    27888888888887653 4466688999


Q ss_pred             HHHHHHhccCCccc-chhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          140 PLLLKQLFGKAESK-FSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       140 ~~Lv~lL~s~~~~~-~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      ..|+.+|..-.... ....+.+.+..++.|+ ..|.....+...++...+.+..++..|.+.+..++..+..+|..+
T Consensus       110 ~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl-kal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l  185 (187)
T PF06371_consen  110 EALLNVLSKLNKKKEKSEEDIDIEHECLRCL-KALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL  185 (187)
T ss_dssp             HHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH-HHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhcchhHHHHHHHHHHH-HHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            99999996432210 0012356788888854 445545556666777889999999999999999999998888766

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=93.76  E-value=1.7  Score=40.19  Aligned_cols=239  Identities=16%  Similarity=0.105  Sum_probs=128.1

Q ss_pred             cHHHHHHHHHHHHhCCCCCCCCCCCCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHH
Q 015728           65 NHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLK  144 (401)
Q Consensus        65 n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~  144 (401)
                      ...+..++.++++-|...  .++.+++++.+..+.+.+....++..                  ... .... .+..+..
T Consensus        13 ~~n~~~i~~KL~efn~~~--~~~~~l~~~el~~L~~~~~~~~~~~~------------------~~~-~~~~-~~~~~~~   70 (268)
T PF08324_consen   13 QANLDKILKKLKEFNEKL--QKELKLSEEELESLESLLSALKSTSA------------------YHS-DLSA-WLILLLK   70 (268)
T ss_dssp             ---HHHHHHHHHHHHTTS--HCCT-S-HHHHHHHHHHHCCCCCC-S------------------S----HHH-HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC--ccccCCCHHHHHHHHHHHHHhcCCCc------------------ccc-chhH-HHHHHHH
Confidence            345677888888877432  34446777777777666653332211                  000 1111 1344555


Q ss_pred             HhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCc-hHHHHHHhhc----CCHHHHHHHHHHHHHHHhcc
Q 015728          145 QLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESK-MESFIVLFEH----GSCSIKKRLCHLVEVIISSS  219 (401)
Q Consensus       145 lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~-i~~Lv~~L~~----~~~~~~~~aa~~L~~l~s~~  219 (401)
                      ++.+....        -+.=++- +++.+..+.....-.-...++ ...+..++..    .....+.-+.+++.|+ =..
T Consensus        71 ~~~~Wp~~--------~~fP~lD-LlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~Nl-F~~  140 (268)
T PF08324_consen   71 ILLSWPPE--------SRFPALD-LLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANL-FSH  140 (268)
T ss_dssp             HHCCS-CC--------C-HHHHH-HHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHH-TTS
T ss_pred             HHHhCCCc--------cchhHHh-HHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHh-hCC
Confidence            55443322        4566667 888777666544322222222 3444444433    3567778889999998 444


Q ss_pred             cchhhhhhhhccchH-HHHHHHHHc-cC----CchhHHHHHHHHHHhcCCC-chh-HHHHhcCcHHHHHHHHHhhccccc
Q 015728          220 HETKELCCKLGKDDR-LLREIISLV-HH----NSEASDAGVRAFSALCSTE-TNR-KTLVQEGAINGLIAYISNALTRER  291 (401)
Q Consensus       220 ~~~~~~~~~i~~~~g-~i~~Lv~lL-~~----~~~~~~~a~~aL~~Ls~~~-~n~-~~iv~~G~v~~Lv~lL~~~~~~~~  291 (401)
                      .   ..+..+....+ .|...+..+ ..    +..++.+++..++|++..- .++ ..-.+...+..+++.+... ..++
T Consensus       141 ~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~-~~d~  216 (268)
T PF08324_consen  141 P---PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE-ESDE  216 (268)
T ss_dssp             C---CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC-HTSH
T ss_pred             C---ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc-cCCH
Confidence            3   55666665544 344444434 22    3449999999999998422 222 1112223556666644321 3578


Q ss_pred             hHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH-hcCChhHHHHH
Q 015728          292 SLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF-RVSDHEGSENA  340 (401)
Q Consensus       292 ~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~-~~~~~~~~~~a  340 (401)
                      +..-.++.+|.+|...+.........-|+-..+-+ .. ...+++.++.+
T Consensus       217 Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~-~~~~~~e~ri~~v~  265 (268)
T PF08324_consen  217 EALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSK-KANKSKEPRIKEVA  265 (268)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHH-HHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHH-HHhcccchHHHHHh
Confidence            89999999999999877777777533344333333 33 22344555544

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.72  E-value=2.5  Score=38.16  Aligned_cols=143  Identities=12%  Similarity=0.058  Sum_probs=94.0

Q ss_pred             hHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh--ccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHH
Q 015728          249 ASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA--LTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALV  325 (401)
Q Consensus       249 ~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv  325 (401)
                      -.-+|+..|--++++++.|..++++-.=-.|-.+|.+.  ..+.+.++-.+++++..|...++ +-..+....++||-.+
T Consensus        95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            45667777777889999999999998766777777542  12345688889999999997543 4444445889999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHhcCCH---HHHHHHHHcCcH----HHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          326 KMVFRVSDHEGSENAINSLMMICCDSL---QAREEAICAGVL----TQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v----~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      + ++..|++..+..|..++.-|-.++.   -+.+..-+.-+|    ..++.-+-+.++.+.-+.+....-.|+.
T Consensus       175 r-ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  175 R-IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             H-HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            9 6777887889999999987765542   112222222222    2233323333366665555555544444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=93.71  E-value=4.5  Score=41.01  Aligned_cols=202  Identities=15%  Similarity=0.147  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHH
Q 015728          115 IVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFI  194 (401)
Q Consensus       115 a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv  194 (401)
                      -++....+...+++.+..+     .|.|-.-|++....        ++-+++. .+..++..+- .-+.+  ...|+.|-
T Consensus       247 lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~em--------V~lE~Ar-~v~~~~~~nv-~~~~~--~~~vs~L~  309 (898)
T COG5240         247 LVRATVELLKENSQALLQL-----RPFLNSWLSDKFEM--------VFLEAAR-AVCALSEENV-GSQFV--DQTVSSLR  309 (898)
T ss_pred             hHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchh--------hhHHHHH-HHHHHHHhcc-CHHHH--HHHHHHHH
Confidence            3444445555555544444     45565666555433        7777777 5555553221 11222  23577777


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcCCCchhHHHHhcC
Q 015728          195 VLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEG  274 (401)
Q Consensus       195 ~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G  274 (401)
                      .+|++.....|-.|.++|-.| +...     -+.+...+-=++.|+.  +.+......|...|.. ..++++..+++.  
T Consensus       310 ~fL~s~rv~~rFsA~Riln~l-am~~-----P~kv~vcN~evEsLIs--d~Nr~IstyAITtLLK-TGt~e~idrLv~--  378 (898)
T COG5240         310 TFLKSTRVVLRFSAMRILNQL-AMKY-----PQKVSVCNKEVESLIS--DENRTISTYAITTLLK-TGTEETIDRLVN--  378 (898)
T ss_pred             HHHhcchHHHHHHHHHHHHHH-HhhC-----CceeeecChhHHHHhh--cccccchHHHHHHHHH-cCchhhHHHHHH--
Confidence            888888889999999999999 7654     2333332222333332  2233344455444443 245556666554  


Q ss_pred             cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHH
Q 015728          275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA  354 (401)
Q Consensus       275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  354 (401)
                      .||..++=++      +..+..+..++..|+-.-..++...     +.-|...|...+.-+-+..++.++..+-.+.++.
T Consensus       379 ~I~sfvhD~S------D~FKiI~ida~rsLsl~Fp~k~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s  447 (898)
T COG5240         379 LIPSFVHDMS------DGFKIIAIDALRSLSLLFPSKKLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS  447 (898)
T ss_pred             HHHHHHHhhc------cCceEEeHHHHHHHHhhCcHHHHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH
Confidence            3555555444      2344455556666654322222111     2223333333344445555555555555444444


Q ss_pred             H
Q 015728          355 R  355 (401)
Q Consensus       355 ~  355 (401)
                      +
T Consensus       448 k  448 (898)
T COG5240         448 K  448 (898)
T ss_pred             H
Confidence            4

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=93.66  E-value=2.1  Score=43.64  Aligned_cols=151  Identities=8%  Similarity=0.040  Sum_probs=91.8

Q ss_pred             ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh--hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES--LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~--~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      .|...+++|++..+.        ++++|+. +...|+---..+  .+.+..-|.  .|.+-|....+++.-....+++.+
T Consensus       605 ivStiL~~L~~k~p~--------vR~~aad-l~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I  673 (975)
T COG5181         605 IVSTILKLLRSKPPD--------VRIRAAD-LMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSI  673 (975)
T ss_pred             HHHHHHHHhcCCCcc--------HHHHHHH-HHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHH
Confidence            466777888888754        8888888 766554100000  111212222  234455566777776666677777


Q ss_pred             HhcccchhhhhhhhccchHHHHHHHHHccCC-chhHHHHHHHHHHhcCCCchhHHHHhc-CcHHHHHHHHHhhccccchH
Q 015728          216 ISSSHETKELCCKLGKDDRLLREIISLVHHN-SEASDAGVRAFSALCSTETNRKTLVQE-GAINGLIAYISNALTRERSL  293 (401)
Q Consensus       216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~a~~aL~~Ls~~~~n~~~iv~~-G~v~~Lv~lL~~~~~~~~~~  293 (401)
                      ++..    ..+..--...|++|.|..+|+.. ..++.+....+..++.+........+. -+---|++.|.   +-+.+.
T Consensus       674 ~sv~----~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lk---s~nKei  746 (975)
T COG5181         674 YSVH----RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLK---SWNKEI  746 (975)
T ss_pred             hhhh----cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH---HhhHHH
Confidence            4433    22221112358999999999654 458888888888888654432222221 14455788888   567788


Q ss_pred             HHHHHHHHHHHhC
Q 015728          294 AAIAMARIEQLLA  306 (401)
Q Consensus       294 ~~~a~~~L~~La~  306 (401)
                      +.+|..++..++.
T Consensus       747 RR~A~~tfG~Is~  759 (975)
T COG5181         747 RRNATETFGCISR  759 (975)
T ss_pred             HHhhhhhhhhHHh
Confidence            8888888887775

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.66  E-value=0.87  Score=41.73  Aligned_cols=99  Identities=12%  Similarity=0.113  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES  188 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g  188 (401)
                      ......|++.|+-++--+|.-|..+.+...+..|+.+|....+       +.++-.++.+++..|. ++..+.+...+.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~-------~~i~~a~L~tLv~iLl-d~p~N~r~FE~~~  176 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNP-------PAIQSACLDTLVCILL-DSPENQRDFEELN  176 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCC-------chHHHHHHHHHHHHHH-cChHHHHHHHHhC
Confidence            3346668899999999999999999999999999999944332       4588888884555554 5555545666889


Q ss_pred             chHHHHHHhhcC--CHHHHHHHHHHHHHH
Q 015728          189 KMESFIVLFEHG--SCSIKKRLCHLVEVI  215 (401)
Q Consensus       189 ~i~~Lv~~L~~~--~~~~~~~aa~~L~~l  215 (401)
                      |+..++.++++.  +.+++-.....|.-.
T Consensus       177 Gl~~v~~llk~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  177 GLSTVCSLLKSKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             CHHHHHHHHccccccHHHhHHHHHHHHHH
Confidence            999999999865  346666666655443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=93.58  E-value=2.8  Score=43.67  Aligned_cols=150  Identities=7%  Similarity=0.064  Sum_probs=86.9

Q ss_pred             hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh--hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 015728          139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES--LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVII  216 (401)
Q Consensus       139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~--~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~  216 (401)
                      +...+..|++.+        ++++.+|+. +...++.-=..+  -+.+..-|.  .|.+.|....+++.-....+|+.++
T Consensus       801 ~stiL~rLnnks--------a~vRqqaad-lis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  801 CSTILWRLNNKS--------AKVRQQAAD-LISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIV  869 (1172)
T ss_pred             HHHHHHHhcCCC--------hhHHHHHHH-HHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHH
Confidence            344455566655        447777777 666554110000  112222232  2446666677777765555666653


Q ss_pred             hcccchhhhhhhhccchHHHHHHHHHccCC-chhHHHHHHHHHHhcCCCchhHHHHhc-CcHHHHHHHHHhhccccchHH
Q 015728          217 SSSHETKELCCKLGKDDRLLREIISLVHHN-SEASDAGVRAFSALCSTETNRKTLVQE-GAINGLIAYISNALTRERSLA  294 (401)
Q Consensus       217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~a~~aL~~Ls~~~~n~~~iv~~-G~v~~Lv~lL~~~~~~~~~~~  294 (401)
                      +..+    .....-...|++|.|..+|+.. ..++.+....+..++..........+. -+---|+++|.   .-+.+.+
T Consensus       870 nvig----m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk---ahkK~iR  942 (1172)
T KOG0213|consen  870 NVIG----MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK---AHKKEIR  942 (1172)
T ss_pred             Hhcc----ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            3322    1111112358899999999654 459999999999999544322222221 24456888888   4567788


Q ss_pred             HHHHHHHHHHhC
Q 015728          295 AIAMARIEQLLA  306 (401)
Q Consensus       295 ~~a~~~L~~La~  306 (401)
                      .+|..++..++.
T Consensus       943 Raa~nTfG~Iak  954 (1172)
T KOG0213|consen  943 RAAVNTFGYIAK  954 (1172)
T ss_pred             HHHHhhhhHHHH
Confidence            888888888775

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=93.55  E-value=0.22  Score=47.99  Aligned_cols=50  Identities=26%  Similarity=0.462  Sum_probs=42.2

Q ss_pred             ccccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC
Q 015728           13 FRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV   63 (401)
Q Consensus        13 ~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~   63 (401)
                      +.|.|.+++-.+||..+ .||.|.++-|+++.. ....||..+++++.+++.
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~-e~G~DPIt~~pLs~eelV   51 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIA-ETGKDPITNEPLSIEELV   51 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHH-HcCCCCCCCCcCCHHHee
Confidence            46999999999999865 999999999999998 456799998888765443

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.54  E-value=0.016  Score=52.57  Aligned_cols=41  Identities=24%  Similarity=0.282  Sum_probs=33.4

Q ss_pred             cccccccccccCCceEcCccccc-cHHhHHHHHHcCCCCCCCCcccC
Q 015728           12 LFRCPISLDLFTDPVTLCTGQTY-DRSSIEKWLAAGNLTCPVTMQTL   57 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~~Cgh~f-c~~Ci~~~~~~~~~~CP~c~~~~   57 (401)
                      +..|.||++.-.|-+.++|||.. |-.|-.+     -..||.||+.+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-----MNECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccc-----cccCchHHHHH
Confidence            67899999999999999999954 7777533     34699998754

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=1.6  Score=45.39  Aligned_cols=248  Identities=15%  Similarity=0.118  Sum_probs=143.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE  187 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~  187 (401)
                      +.+.|+-.-.-|.+-+...|.-     ..+++..+++  ...++      ++.++--|+. .+..+..+     +++  .
T Consensus        62 dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~k--D~~d~------np~iR~lAlr-tm~~l~v~-----~i~--e  120 (734)
T KOG1061|consen   62 DLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLK--DCEDP------NPLIRALALR-TMGCLRVD-----KIT--E  120 (734)
T ss_pred             CchHHHHHHHHHHHhhccCchH-----HHhhhhhhhc--cCCCC------CHHHHHHHhh-ceeeEeeh-----HHH--H
Confidence            4556665556666666665522     1223444433  22222      3667777777 55544321     122  1


Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCch
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETN  266 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n  266 (401)
                      -...++...++++++.+|..++..+.++ -..+     .... ...|+++.|-.++. +++.+..+|+.+|..+...+.+
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl-~~~~-----~~~~-~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~  193 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKL-FDID-----PDLV-EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS  193 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHh-hcCC-----hhhc-cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence            2478899999999999999998888887 4332     3333 34599999999995 5677999999999999854432


Q ss_pred             --hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC---CHh-hHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          267 --RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA---IEN-SKDALINNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       267 --~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~---~~~-~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                        -.. ...-.+..++..|.      +...=.-+.+|..|+.   .++ ....+      +..+.. -+.+.++.+.-.+
T Consensus       194 ~~~~~-l~~~~~~~lL~al~------ec~EW~qi~IL~~l~~y~p~d~~ea~~i------~~r~~p-~Lqh~n~avvlsa  259 (734)
T KOG1061|consen  194 VNLLE-LNPQLINKLLEALN------ECTEWGQIFILDCLAEYVPKDSREAEDI------CERLTP-RLQHANSAVVLSA  259 (734)
T ss_pred             CCccc-ccHHHHHHHHHHHH------HhhhhhHHHHHHHHHhcCCCCchhHHHH------HHHhhh-hhccCCcceEeeh
Confidence              111 11112223333333      1111112223333332   211 22222      223333 2344455677778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhcc
Q 015728          341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH  400 (401)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~  400 (401)
                      +.++..+...-.+ ....+-...-++|+.++..+ + +..-.|..=++.+-.+.|+.+++
T Consensus       260 vKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~  316 (734)
T KOG1061|consen  260 VKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKV  316 (734)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHh
Confidence            8888887765444 44566667778888888666 4 77777777777777777776653

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=93.48  E-value=8.4  Score=41.36  Aligned_cols=249  Identities=14%  Similarity=0.159  Sum_probs=138.4

Q ss_pred             hHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhh----cCC----H
Q 015728          131 NCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFE----HGS----C  202 (401)
Q Consensus       131 ~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~----~~~----~  202 (401)
                      ..+.+.||+..|+.+|.+-...   ..+.......+. +|...+.-..+.+.++ +.|+++.|+..|.    .++    .
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~~---~~~~~ll~~llk-LL~~c~Kv~~NR~~Ll-~~~al~~LL~~L~~~l~~~~~~~~~  185 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRDF---SRGRELLQVLLK-LLRYCCKVKVNRRALL-ELNALNRLLSVLNRALQANQNSSQA  185 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhccc---cCcHHHHHHHHH-HHHHHHhhHHHHHHHH-HcCCHHHHHHHHHHHHhCccccccc
Confidence            3566799999999999764321   012445556666 7776665444444444 7999999998874    333    4


Q ss_pred             HHHHHHHHHHHHHHhcccchhhhhhhhc---c------chHHHHHHHHHcc-----CCchhHHHHHHHHHHhcCCCch-h
Q 015728          203 SIKKRLCHLVEVIISSSHETKELCCKLG---K------DDRLLREIISLVH-----HNSEASDAGVRAFSALCSTETN-R  267 (401)
Q Consensus       203 ~~~~~aa~~L~~l~s~~~~~~~~~~~i~---~------~~g~i~~Lv~lL~-----~~~~~~~~a~~aL~~Ls~~~~n-~  267 (401)
                      +.-+....++..|.+.... +.......   .      ...-+..|+..+.     .+..+....+++|-+|+..... -
T Consensus       186 ~i~E~LL~IiE~ll~ea~~-~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m  264 (802)
T PF13764_consen  186 EIAEQLLEIIESLLSEANS-SSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM  264 (802)
T ss_pred             hHHHHHHHHHHHHHHHHhh-hhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence            5555555566555222110 01111000   0      1123556666552     2356888999999999965544 3


Q ss_pred             HHHHhcCcHHHHHHHHHh--hccccchHHHHHHHHHHHHhC----CH---hhHHHHHhCCCcHHHHHHHHHhc-------
Q 015728          268 KTLVQEGAINGLIAYISN--ALTRERSLAAIAMARIEQLLA----IE---NSKDALINNPNGVYALVKMVFRV-------  331 (401)
Q Consensus       268 ~~iv~~G~v~~Lv~lL~~--~~~~~~~~~~~a~~~L~~La~----~~---~~~~~~~~~~g~i~~Lv~~l~~~-------  331 (401)
                      ..+++.  +.+.+++=.-  .+..+.   +..+..++.++.    +.   .-|..++ +.|.+...++-|.+.       
T Consensus       265 ~~Lv~~--F~p~l~f~~~D~~~~~~~---~~~Le~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~~~~~  338 (802)
T PF13764_consen  265 DALVEH--FKPYLDFDKFDEEHSPDE---QFKLECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPSLKNT  338 (802)
T ss_pred             HHHHHH--HHHhcChhhcccccCchH---HHHHHHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcccccC
Confidence            333442  3333332221  001111   122444444443    22   3345665 889999888865432       


Q ss_pred             CChh--------HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          332 SDHE--------GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       332 ~~~~--------~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .+++        .-..+++.|..||.+....+ .++..+.++.+-.|=+..+....-..|-.+|..|.+
T Consensus       339 ~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ-~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  339 DSPEWKEFLSRPSLPYILRLLRGLARGHEPTQ-LLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHH-HHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            1112        34558899999998876554 557778884444443334345666677777777766

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.24  E-value=0.22  Score=29.52  Aligned_cols=30  Identities=27%  Similarity=0.295  Sum_probs=26.0

Q ss_pred             cHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728          363 VLTQLLLLLQSQCSNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       363 ~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  393 (401)
                      .+|.++++++++ ++++|..|+..|..+.++
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence            368899999888 999999999999999885

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.20  E-value=0.39  Score=41.77  Aligned_cols=81  Identities=12%  Similarity=0.297  Sum_probs=64.9

Q ss_pred             hHHHHhcCcHHHHHHHHHhhc------cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          267 RKTLVQEGAINGLIAYISNAL------TRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       267 ~~~iv~~G~v~~Lv~lL~~~~------~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                      ...+++.||+..|+.+|....      ..+......++..|..|..+..|...++.+.++|..++.. +.+.+..++..+
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~-L~s~~~~~r~~~  178 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALS-LDSPNIKTRKLA  178 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHH-HCCCCHHHHHHH
Confidence            567788999999999996421      1223567778999999999999999999899999999994 667778999999


Q ss_pred             HHHHHHHh
Q 015728          341 INSLMMIC  348 (401)
Q Consensus       341 ~~~L~~l~  348 (401)
                      +.+|..+|
T Consensus       179 leiL~~lc  186 (187)
T PF06371_consen  179 LEILAALC  186 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=93.20  E-value=5  Score=39.04  Aligned_cols=246  Identities=12%  Similarity=0.129  Sum_probs=129.1

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      +.-+.+-|. .+.+...|+.++-.|..-+.. +..|+.+...|.+..+++.+.+....      . +...++.+++..++
T Consensus        23 v~ylld~l~-~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d------~-~~~l~~a~i~~~l~   93 (361)
T PF07814_consen   23 VEYLLDGLE-SSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDD------D-ILALATAAILYVLS   93 (361)
T ss_pred             HHHHHhhcc-cCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccch------H-HHHHHHHHHHHHHc
Confidence            333333355 445667899999999998874 56999999999999999999544321      2 45555555888777


Q ss_pred             CCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHH-HHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc------c--
Q 015728          175 VGETESLNLLNEESKMESFIVLFEHGSC-SIKKRL-CHLVEVIISSSHETKELCCKLGKDDRLLREIISLV------H--  244 (401)
Q Consensus       175 ~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~a-a~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL------~--  244 (401)
                      .+.. ...++.+.+.+..++.++..... +..... ..-=.++ +.      +.+      +.+..+..++      .  
T Consensus        94 ~d~~-~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~l-sk------~~~------~~~~~~~~~~~~~~~~~~~  159 (361)
T PF07814_consen   94 RDGL-NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNL-SK------VQQ------KSRSLCKELLSSGSSWKSP  159 (361)
T ss_pred             cCCc-chhhhhchhHHHHHHHHhccccccccccchhhhhhhhh-hH------HHH------HHHHHHHHHHhcccccccc
Confidence            5543 33344455666666777761100 000000 0000011 10      000      1111111111      0  


Q ss_pred             --CCchhHHHHHHHHHHhc--------------CC-CchhHHHHhcCcHHHHHHHHHhhc--------cc-----cchHH
Q 015728          245 --HNSEASDAGVRAFSALC--------------ST-ETNRKTLVQEGAINGLIAYISNAL--------TR-----ERSLA  294 (401)
Q Consensus       245 --~~~~~~~~a~~aL~~Ls--------------~~-~~n~~~iv~~G~v~~Lv~lL~~~~--------~~-----~~~~~  294 (401)
                        ....-+.-|+.+|-.++              .. +.=+..+.+.|++..+++++.+++        ..     +-...
T Consensus       160 ~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l  239 (361)
T PF07814_consen  160 KPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDL  239 (361)
T ss_pred             CCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHH
Confidence              01123444555555552              01 112666778899999999986210        00     11234


Q ss_pred             HHHHHHHHHHhC-CHhhHHHHHhCC-CcHHHHHHHHHhcCC---hhHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 015728          295 AIAMARIEQLLA-IENSKDALINNP-NGVYALVKMVFRVSD---HEGSENAINSLMMICCDSLQAREEAICAGV  363 (401)
Q Consensus       295 ~~a~~~L~~La~-~~~~~~~~~~~~-g~i~~Lv~~l~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  363 (401)
                      +.++.+|.+-.. +.++........ +..+.+...++....   ......+++++.|++.++++..+++...+.
T Consensus       240 ~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l  313 (361)
T PF07814_consen  240 ERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL  313 (361)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence            567778887764 344554443232 233333332333221   223567999999999888654444444433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=93.06  E-value=0.091  Score=49.25  Aligned_cols=61  Identities=16%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             CCCcccccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHH
Q 015728            9 IPHLFRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWL   76 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~   76 (401)
                      ..+.+.||+|.+.+..|+. -.=||.-|..|-.+    ....||.|+.++..   ..+..+.+.++...
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~~  106 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAVL  106 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhce
Confidence            3467899999999999985 35789999999753    34569999998873   35677777777654

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.02  E-value=0.1  Score=49.99  Aligned_cols=46  Identities=22%  Similarity=0.415  Sum_probs=34.7

Q ss_pred             CCcccccccccccCCce---EcCccccccHHhHHHHHHc----C---CCCCCCCcc
Q 015728           10 PHLFRCPISLDLFTDPV---TLCTGQTYDRSSIEKWLAA----G---NLTCPVTMQ   55 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv---~~~Cgh~fc~~Ci~~~~~~----~---~~~CP~c~~   55 (401)
                      ...|.|.||.+...-.+   .+||+|.||+.|+..|+..    +   ...||.++.
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            34688999999776533   3799999999999999874    2   355777543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.00  E-value=6.2  Score=39.90  Aligned_cols=261  Identities=14%  Similarity=0.144  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhh-HHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcc-
Q 015728          109 LETKLQIVQKIHVVLRESPPASN-CLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLN-  185 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~-~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~-  185 (401)
                      ....+.++.-+-.+-++-..-+. .+-=.+.||.|-.-+....+        ..+...+. -+..|- ..+   .+.+. 
T Consensus       138 d~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~--------~tR~flv~-Wl~~Lds~P~---~~m~~y  205 (675)
T KOG0212|consen  138 DQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP--------MTRQFLVS-WLYVLDSVPD---LEMISY  205 (675)
T ss_pred             ccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc--------hHHHHHHH-HHHHHhcCCc---HHHHhc
Confidence            34445555555555544332222 22223445555554443332        24443343 333222 222   22321 


Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCC
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTE  264 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~  264 (401)
                      -+..++-|..+|..++.++|..+-.+|.++...-    .++....+....++.++.-+ ++++..+..|+.-|...-...
T Consensus       206 l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI----~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~  281 (675)
T KOG0212|consen  206 LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI----RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP  281 (675)
T ss_pred             chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH----hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence            1345667778888888998866665555441110    11222223345678888877 455668888888888777655


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHH---HHHHhCCHhhHHHHHhCCC-cHHHHHHHHHhcCChhHHHHH
Q 015728          265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR---IEQLLAIENSKDALINNPN-GVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~---L~~La~~~~~~~~~~~~~g-~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                      .+.-..--+|++..++.++.+  +.....++.+..+   |..+...+.....+  +.| .|..|.+ .+.++....+-.+
T Consensus       282 g~~~l~~~s~il~~iLpc~s~--~e~~~i~~~a~~~n~~l~~l~s~~~~~~~i--d~~~ii~vl~~-~l~~~~~~tri~~  356 (675)
T KOG0212|consen  282 GRDLLLYLSGILTAILPCLSD--TEEMSIKEYAQMVNGLLLKLVSSERLKEEI--DYGSIIEVLTK-YLSDDREETRIAV  356 (675)
T ss_pred             CcchhhhhhhhhhhcccCCCC--CccccHHHHHHHHHHHHHHHHhhhhhcccc--chHHHHHHHHH-HhhcchHHHHHHH
Confidence            555555567888888888884  3333455554443   44555555555444  334 4555555 5666666677777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +.-+..|-...+... -......++.|+.-|.+. ++.+-..+..++.-++.
T Consensus       357 L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~  406 (675)
T KOG0212|consen  357 LNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICS  406 (675)
T ss_pred             HHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhc
Confidence            777766655433222 334556667777766555 67777777777666665

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.97  E-value=0.52  Score=36.46  Aligned_cols=91  Identities=10%  Similarity=0.070  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728          251 DAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      +-++.+|...+..-. ...... .-++|+++..+.   +.+..++-.|+.+|.+++....+..... -......|.+ +.
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~---D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~k-l~   77 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFD---DQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCK-LS   77 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
Confidence            344555555553222 222222 348999999998   7899999999999999997544332211 2346667777 56


Q ss_pred             hcCChhHHHHHHHHHHHHh
Q 015728          330 RVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~  348 (401)
                      .+.++.++. ++..|-.+-
T Consensus        78 ~D~d~~Vr~-~a~~Ld~ll   95 (97)
T PF12755_consen   78 ADPDENVRS-AAELLDRLL   95 (97)
T ss_pred             cCCchhHHH-HHHHHHHHh
Confidence            667755444 556666654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.93  E-value=4.5  Score=38.41  Aligned_cols=179  Identities=14%  Similarity=0.112  Sum_probs=98.4

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC---chhhh
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG---ETESL  181 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~---~~~~~  181 (401)
                      .+...|..++..|.++....... ..+.+  .-.+..+.+.++.+...        -+..|+. ++..++..   .++..
T Consensus        55 K~~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~--------E~~lA~~-~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   55 KSSSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSE--------EQALAAR-ALALLALTLGAGEDSE  124 (309)
T ss_pred             cCHHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHH--------HHHHHHH-HHHHHhhhcCCCccHH
Confidence            45778999999999999776532 23322  34577777878776532        3444545 55555433   12333


Q ss_pred             hhcccCCchHHHHHHhhcCC--HHHHHHHHHHHHHHHhccc--chhhhhhhhccchHHHH--HHHHHcc--CC-------
Q 015728          182 NLLNEESKMESFIVLFEHGS--CSIKKRLCHLVEVIISSSH--ETKELCCKLGKDDRLLR--EIISLVH--HN-------  246 (401)
Q Consensus       182 ~~v~~~g~i~~Lv~~L~~~~--~~~~~~aa~~L~~l~s~~~--~~~~~~~~i~~~~g~i~--~Lv~lL~--~~-------  246 (401)
                      .+.  ....|.|...+..++  ...|..++.+|.-+ +...  +.++....+    ..+.  .....++  ++       
T Consensus       125 ei~--~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~-~fv~~~d~~~~~~~~----~~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  125 EIF--EELKPVLKRILTDSSASPKARAACLEALAIC-TFVGGSDEEETEELM----ESLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             HHH--HHHHHHHHHHHhCCccchHHHHHHHHHHHHH-HHhhcCChhHHHHHH----HHHHHHHHHHhcCcCCCcccccCC
Confidence            444  246788888887654  34555555555554 2221  011111111    1223  2222222  11       


Q ss_pred             --chhHHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728          247 --SEASDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL  305 (401)
Q Consensus       247 --~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La  305 (401)
                        ..+.-+|+.+-.-|. ..+.....-.-...+|.|+.+|.   +.+.+++..|-.+|+.|-
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~---s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD---SDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHH
Confidence              235555655555444 33332222222347999999999   678889888877777664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.91  E-value=0.072  Score=47.31  Aligned_cols=36  Identities=28%  Similarity=0.497  Sum_probs=32.2

Q ss_pred             CCCcccccccccccCCceEcCccccccHHhHHHHHH
Q 015728            9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLA   44 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~   44 (401)
                      +.+.-.|.+|++.+.+||..+-||.||+.||.+++-
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            445667899999999999999999999999999876

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.90  E-value=4.4  Score=40.14  Aligned_cols=129  Identities=12%  Similarity=0.182  Sum_probs=91.8

Q ss_pred             HHHHccCC-chhHHHHHHHHHHhcCCCc----hhHHHHhcCcHHHHHHHHHhhcc----ccchHHHHHHHHHHHHhCCHh
Q 015728          239 IISLVHHN-SEASDAGVRAFSALCSTET----NRKTLVQEGAINGLIAYISNALT----RERSLAAIAMARIEQLLAIEN  309 (401)
Q Consensus       239 Lv~lL~~~-~~~~~~a~~aL~~Ls~~~~----n~~~iv~~G~v~~Lv~lL~~~~~----~~~~~~~~a~~~L~~La~~~~  309 (401)
                      +..++.+. .+-+-+|+-..-.++.+++    ||+.+.++=+.+.+=+||.+...    ++.-.+..++.+|.-.|..+|
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            44455433 3345555555566776665    78889999999999999975311    122356788999999999987


Q ss_pred             --hHHHHHhCCCcHHHHHHHHHhcCChh------HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh
Q 015728          310 --SKDALINNPNGVYALVKMVFRVSDHE------GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL  371 (401)
Q Consensus       310 --~~~~~~~~~g~i~~Lv~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll  371 (401)
                        ...+++   ..||.|.+.+.+..++.      ..+.+-.+|-.++.+.+ -...++..|+++.+-++-
T Consensus        96 lAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   96 LASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMY  161 (698)
T ss_pred             hccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHH
Confidence              345665   46999999666555544      56668888888888844 455899999999998654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.89  E-value=6.2  Score=41.78  Aligned_cols=103  Identities=13%  Similarity=0.088  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHH
Q 015728          275 AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA  354 (401)
Q Consensus       275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  354 (401)
                      +|+.+.+=|.   ++++.++..|+.+|..|-.     .++.+  -.++++.+ ++.+.++-+++.|+-++..+-..+.  
T Consensus        93 avNti~kDl~---d~N~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~-~l~d~~ayVRk~Aalav~kly~ld~--  159 (757)
T COG5096          93 AVNTIQKDLQ---DPNEEIRGFALRTLSLLRV-----KELLG--NIIDPIKK-LLTDPHAYVRKTAALAVAKLYRLDK--  159 (757)
T ss_pred             HHHHHHhhcc---CCCHHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHH-HccCCcHHHHHHHHHHHHHHHhcCH--
Confidence            3455555555   5666666666666655421     11211  23445555 4555666667777777766665543  


Q ss_pred             HHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          355 REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       355 ~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                       ....+.|.+..+..++++. ++.+..+|...|..+..
T Consensus       160 -~l~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         160 -DLYHELGLIDILKELVADS-DPIVIANALASLAEIDP  195 (757)
T ss_pred             -hhhhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence             2345566666666666555 66666666666666544

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=92.88  E-value=0.035  Score=56.90  Aligned_cols=68  Identities=18%  Similarity=0.412  Sum_probs=52.1

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQ   77 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~   77 (401)
                      ..++.||||...+++|+.+.|.|.||..|+...|..  +...||+|+.....+..+.......+++.+..
T Consensus        19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~lk   88 (684)
T KOG4362|consen   19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKESLK   88 (684)
T ss_pred             hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHhcC
Confidence            457899999999999999999999999999876653  35779999977766555545555566665443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=92.87  E-value=0.046  Score=57.06  Aligned_cols=46  Identities=17%  Similarity=0.374  Sum_probs=38.2

Q ss_pred             ccccccccccCCceEcCccccccHHhHHHHHHcCC-CCCCCCcccCCC
Q 015728           13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGN-LTCPVTMQTLHD   59 (401)
Q Consensus        13 ~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~-~~CP~c~~~~~~   59 (401)
                      +.|++|.+ ...++.+.|||.||..|+...+.... ..||.|+..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            78999999 78888899999999999999887533 459999876543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=92.76  E-value=11  Score=40.57  Aligned_cols=244  Identities=15%  Similarity=0.189  Sum_probs=135.5

Q ss_pred             hhhhhcChHHHHHHHHHHHHHHhcCchhhhHHH--hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC--Cc
Q 015728          102 LQSHEATLETKLQIVQKIHVVLRESPPASNCLI--QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV--GE  177 (401)
Q Consensus       102 l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~--~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~--~~  177 (401)
                      |..-+++...+..++..|..+.-.++.-  .|.  ..-..|+++.....+.        .++-.+|+. +...+..  ..
T Consensus       485 l~DkSsss~~ki~~L~fl~~~L~s~~p~--~fhp~~~~Ls~~v~~aV~d~f--------yKisaEAL~-v~~~lvkvirp  553 (1233)
T KOG1824|consen  485 LNDKSSSSNLKIDALVFLYSALISHPPE--VFHPHLSALSPPVVAAVGDPF--------YKISAEALL-VCQQLVKVIRP  553 (1233)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhcCChh--hcccchhhhhhHHHHHhcCch--------HhhhHHHHH-HHHHHHHHhcc
Confidence            3444567788889999888877665421  111  1223444444443333        345555555 4433320  00


Q ss_pred             --h----hhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--c-CC
Q 015728          178 --T----ESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--H-HN  246 (401)
Q Consensus       178 --~----~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~-~~  246 (401)
                        .    +....+  ...+...++.|..  .+.++|+.|...+..+++...      ...+   .-+|..+.+|  + ++
T Consensus       554 l~~~~~~d~~~~v--~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg------D~l~---~eL~~~L~il~eRl~n  622 (1233)
T KOG1824|consen  554 LQPPSSFDASPYV--KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG------DFLG---NELPRTLPILLERLGN  622 (1233)
T ss_pred             cCCCccCCCChhH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh------hhhh---hhhHHHHHHHHHHHhc
Confidence              0    000001  0113333455544  366899999999988866443      2221   1234433333  2 34


Q ss_pred             chhHHHHHHHHHHhcCCCchhHHH-HhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH--HHHHhCCCcHHH
Q 015728          247 SEASDAGVRAFSALCSTETNRKTL-VQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK--DALINNPNGVYA  323 (401)
Q Consensus       247 ~~~~~~a~~aL~~Ls~~~~n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~--~~~~~~~g~i~~  323 (401)
                      ...+..|++|+.-++..+-..... +=..+++.|...++   ...+..+...+.++..|..+....  ....  .-++..
T Consensus       623 EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flr---K~~r~lr~~~l~a~~~L~~~~~~~~~~~~~--e~vL~e  697 (1233)
T KOG1824|consen  623 EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLR---KNQRALRLATLTALDKLVKNYSDSIPAELL--EAVLVE  697 (1233)
T ss_pred             hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccHHHH--HHHHHH
Confidence            457889999999988655433322 22347888999888   344555666666666665432111  1111  012222


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728          324 LVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ  374 (401)
Q Consensus       324 Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~  374 (401)
                      +-. +...++...++.|+..|..+....+.+ ...+..-.++.++.+++++
T Consensus       698 l~~-Lisesdlhvt~~a~~~L~tl~~~~ps~-l~~~~~~iL~~ii~ll~Sp  746 (1233)
T KOG1824|consen  698 LPP-LISESDLHVTQLAVAFLTTLAIIQPSS-LLKISNPILDEIIRLLRSP  746 (1233)
T ss_pred             hhh-hhhHHHHHHHHHHHHHHHHHHhcccHH-HHHHhhhhHHHHHHHhhCc
Confidence            333 234466778999999999988875543 3666777888999999887

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.73  E-value=4.1  Score=38.42  Aligned_cols=157  Identities=11%  Similarity=0.122  Sum_probs=100.5

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc--
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL--  184 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v--  184 (401)
                      .+...|..|+.+|.-.+--+.......     ++.+...+..++        ..++..|+.++.-.+..+.......-  
T Consensus        39 ~~~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~--------~~v~~~al~~l~Dll~~~g~~~~~~~~~  105 (298)
T PF12719_consen   39 SDPAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDD--------EEVKITALKALFDLLLTHGIDIFDSESD  105 (298)
T ss_pred             CCHHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHcCchhccchhc
Confidence            457899999999999998877433222     777888885544        45888888844444443332221111  


Q ss_pred             -----ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cC----CchhHHHHH
Q 015728          185 -----NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HH----NSEASDAGV  254 (401)
Q Consensus       185 -----~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~----~~~~~~~a~  254 (401)
                           .....+..+...|++.+++++..|+.-+.+| -..       ..+.....++..|+-+. +.    +...++.-.
T Consensus       106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL-lL~-------~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL-LLS-------GRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH-Hhc-------CCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence                 1123566677888888999999999999998 322       22322135666666655 32    234555555


Q ss_pred             HHHHHhcCCCchhHHHHhcCcHHHHHHHHH
Q 015728          255 RAFSALCSTETNRKTLVQEGAINGLIAYIS  284 (401)
Q Consensus       255 ~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~  284 (401)
                      ..+-..+..+......+..+.+|.+-.+..
T Consensus       178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~  207 (298)
T PF12719_consen  178 VFFPVYASSSPENQERLAEAFLPTLRTLSN  207 (298)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            555567766655556677778888888876

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.69  E-value=0.13  Score=46.01  Aligned_cols=49  Identities=14%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             CCcccccccccccCCceE----cCccccccHHhHHHHHHcCCCCCCCCcccCCCCC
Q 015728           10 PHLFRCPISLDLFTDPVT----LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS   61 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~----~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~   61 (401)
                      ...|.|||..-.|..-..    .+|||.|-.+.+.+.-   ...|++|+..+...+
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~d  161 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDD  161 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccC
Confidence            457999999988877554    4899999988887653   567999999987764

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.51  E-value=7  Score=39.46  Aligned_cols=164  Identities=17%  Similarity=0.185  Sum_probs=107.4

Q ss_pred             hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CC----chhHHHHHHHHHHhcCCC
Q 015728          190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HN----SEASDAGVRAFSALCSTE  264 (401)
Q Consensus       190 i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~----~~~~~~a~~aL~~Ls~~~  264 (401)
                      ...+.+++.+|+...|..|...|..+ |.+.   .....+....| +..|..++. ++    .+.....++++..|-...
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sl-s~d~---~fa~efi~~~g-l~~L~~liedg~~~~~~~~L~~~L~af~elmehg  159 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSL-SLDP---TFAEEFIRCSG-LELLFSLIEDGRVCMSSELLSTSLRAFSELMEHG  159 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhc-cccH---HHHHHHHhcch-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhc
Confidence            45667888999998888888888888 7765   55555555435 689999983 32    246666666666655433


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728          265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL  344 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L  344 (401)
                      -.-+..+...+|-..+.+.. ...-+..+-..|+..|..+..+.....+.+.++--+..|+.. +..++...+..|+..+
T Consensus       160 vvsW~~~~~~fV~~~a~~V~-~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~h-lq~~n~~i~~~aial~  237 (713)
T KOG2999|consen  160 VVSWESVSNDFVVSMASYVN-AKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRH-LQVSNQRIQTCAIALL  237 (713)
T ss_pred             eeeeeecccHHHHHHHHHHh-hhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHH-HHhcchHHHHHHHHHH
Confidence            33334444444545555543 112344677889999999998777555555588889999995 5666667888888888


Q ss_pred             HHHhcC-CHHHHHHHHH
Q 015728          345 MMICCD-SLQAREEAIC  360 (401)
Q Consensus       345 ~~l~~~-~~~~~~~~~~  360 (401)
                      -.+... ++.-|.++.+
T Consensus       238 nal~~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  238 NALFRKAPDDKRFEMAK  254 (713)
T ss_pred             HHHHhhCChHHHHHHHH
Confidence            776543 2234444444

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.46  E-value=16  Score=38.53  Aligned_cols=225  Identities=12%  Similarity=0.129  Sum_probs=119.9

Q ss_pred             HhhhhhhcChHHHHHHHHHHHHHHhcCchhh--------hHHHh--cC----ChHHHHHHhccCCcccchhhhHHHHHHH
Q 015728          100 HSLQSHEATLETKLQIVQKIHVVLRESPPAS--------NCLIQ--LG----FLPLLLKQLFGKAESKFSQVYVQFVEES  165 (401)
Q Consensus       100 ~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r--------~~i~~--~G----~i~~Lv~lL~s~~~~~~~~~~~~~~~~a  165 (401)
                      +++..  .++-.++.|+.+..++-+..|.--        ..+-+  .|    ++-.+..+.+-..+..  ....++...-
T Consensus       149 ~Ll~~--~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l--~~fr~l~~~l  224 (866)
T KOG1062|consen  149 RLLQH--RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL--SYFRDLVPSL  224 (866)
T ss_pred             HHHhC--CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH--HHHHHHHHHH
Confidence            44443  467889999999999988877543        33332  22    2333333333221110  0012233333


Q ss_pred             HHHHHHhhcCCchhhhhhcccCC----c----hHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH-
Q 015728          166 LSCVQKLLLVGETESLNLLNEES----K----MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL-  236 (401)
Q Consensus       166 ~~~~L~~l~~~~~~~~~~v~~~g----~----i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i-  236 (401)
                      +. +|.++....-. .+.= -+|    .    |-.++++|-.++.+..+....+|..+ +...  |.++. ++.  .++ 
T Consensus       225 V~-iLk~l~~~~ys-peyd-v~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqv-atnt--dsskN-~Gn--AILY  295 (866)
T KOG1062|consen  225 VK-ILKQLTNSGYS-PEYD-VHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQV-ATNT--DSSKN-AGN--AILY  295 (866)
T ss_pred             HH-HHHHHhcCCCC-CccC-ccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-Hhcc--ccccc-chh--HHHH
Confidence            44 66665532210 0000 011    1    22345556677777777777788777 5433  13332 222  122 


Q ss_pred             HHHHHHc--cCCchhHHHHHHHHHHhcCCCc-hhHHH--------H--hcCcH----HHHHHHHHhhccccchHHHHHHH
Q 015728          237 REIISLV--HHNSEASDAGVRAFSALCSTET-NRKTL--------V--QEGAI----NGLIAYISNALTRERSLAAIAMA  299 (401)
Q Consensus       237 ~~Lv~lL--~~~~~~~~~a~~aL~~Ls~~~~-n~~~i--------v--~~G~v----~~Lv~lL~~~~~~~~~~~~~a~~  299 (401)
                      +....++  ..+..++..|+.+|...-.+++ |.+.+        +  +..+|    ..+++.|+   +.|..++..|+.
T Consensus       296 E~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~---DpD~SIkrralE  372 (866)
T KOG1062|consen  296 ECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLK---DPDVSIKRRALE  372 (866)
T ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhc---CCcHHHHHHHHH
Confidence            3333333  4667789999999988665444 33221        1  22233    34777788   788889999999


Q ss_pred             HHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          300 RIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       300 ~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                      .+..|....+-+..       +..|++- +...++..+...+.-+..++
T Consensus       373 Ls~~lvn~~Nv~~m-------v~eLl~f-L~~~d~~~k~~~as~I~~la  413 (866)
T KOG1062|consen  373 LSYALVNESNVRVM-------VKELLEF-LESSDEDFKADIASKIAELA  413 (866)
T ss_pred             HHHHHhccccHHHH-------HHHHHHH-HHhccHHHHHHHHHHHHHHH
Confidence            88888643333322       2346663 34446667776666665554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.41  E-value=0.058  Score=51.06  Aligned_cols=43  Identities=14%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             cccccccccccC-Cce---EcCccccccHHhHHHHHHc-CCCCCCCCc
Q 015728           12 LFRCPISLDLFT-DPV---TLCTGQTYDRSSIEKWLAA-GNLTCPVTM   54 (401)
Q Consensus        12 ~~~C~iC~~~~~-~Pv---~~~Cgh~fc~~Ci~~~~~~-~~~~CP~c~   54 (401)
                      .+.|..|++.+- +|-   .+||.|.|..+|+++++.+ +..+||.|+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr  412 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR  412 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence            578999999652 332   2799999999999999875 568899998

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.37  E-value=0.55  Score=37.59  Aligned_cols=71  Identities=23%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +.+..|.++|..+. ++....-|..-|..+++..|..|..+.+.|+=..+..++.+++        ++++.+|+.|+-..
T Consensus        43 ~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d--------~eVr~eAL~avQkl  113 (119)
T PF11698_consen   43 ELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED--------PEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC--------HHHHHHHHHHHHHH
Confidence            78888888885554 4667777999999999999999999988999999999998876        56999999954443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.36  E-value=0.9  Score=35.11  Aligned_cols=67  Identities=21%  Similarity=0.224  Sum_probs=51.1

Q ss_pred             CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHH--HcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728          319 NGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAI--CAGVLTQLLLLLQSQCSNRTKTKARMLLKLL  390 (401)
Q Consensus       319 g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l  390 (401)
                      ..+++++. .+.+.+.+++.+|..+|.++++..   +.+++  -...+..|..++.+. ++.+|..|.-+-++|
T Consensus        27 ~Il~pVL~-~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D~-d~~Vr~~a~~Ld~ll   95 (97)
T PF12755_consen   27 EILPPVLK-CFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSADP-DENVRSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHh
Confidence            45778888 678889999999999999998753   33443  456778888888666 888888886666555

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.24  E-value=0.3  Score=49.35  Aligned_cols=78  Identities=31%  Similarity=0.458  Sum_probs=66.7

Q ss_pred             cCCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCCC
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQH   83 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~   83 (401)
                      ...++|++|.-|+...+|+|||.+| .+-+..++-|..++-. ..+-|-=|.+++..++.||..++..|..|.+..|.++
T Consensus       847 D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~KH  925 (929)
T COG5113         847 DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQKH  925 (929)
T ss_pred             hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccccc
Confidence            3456999999999999999999987 7789999998888774 4467888888888899999999999999988777654

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.09  E-value=3.2  Score=40.62  Aligned_cols=126  Identities=13%  Similarity=0.180  Sum_probs=84.1

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhh-cC---CHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFE-HG---SCSIKKRLCHL  211 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~-~~---~~~~~~~aa~~  211 (401)
                      ......|...++.....     ++.+.-.|+. ++..+..+++-.-.++.++|.++.+++.+. .+   +.++....-.+
T Consensus       105 s~L~~sL~~Il~n~~~F-----G~~v~s~a~~-ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~  178 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVF-----GPSVFSLAIN-IVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV  178 (379)
T ss_pred             hhHHHHHHHHHhCcccc-----chHHHHHHHH-HHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence            44555666666654432     3557788888 888887777777778889999999999887 54   44555555567


Q ss_pred             HHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCc-------hhHHHHHHHHHHhcCCCc-hhHHHHh
Q 015728          212 VEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNS-------EASDAGVRAFSALCSTET-NRKTLVQ  272 (401)
Q Consensus       212 L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~-------~~~~~a~~aL~~Ls~~~~-n~~~iv~  272 (401)
                      |..| +.+.   ...+.+.+. ++++.+++++ +.+.       +....-...+-.|.+++. -|..+++
T Consensus       179 l~Ai-cLN~---~Gl~~~~~~-~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  179 LSAI-CLNN---RGLEKVKSS-NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HhHH-hcCH---HHHHHHHhc-ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            7777 7765   667777665 8999999988 3321       233334445666776544 4555544

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.88  E-value=0.7  Score=41.56  Aligned_cols=83  Identities=20%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             chHHHHHHHHHHHHhCCHhhHHHHHhCCC-------cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH-HHHHHHHcC
Q 015728          291 RSLAAIAMARIEQLLAIENSKDALINNPN-------GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ-AREEAICAG  362 (401)
Q Consensus       291 ~~~~~~a~~~L~~La~~~~~~~~~~~~~g-------~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g  362 (401)
                      -.-+..|+.+|+-|+..+.|-..+. ..+       .+..|++.+-...++-.+|.|+..|.+||..+.. ++....+.+
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            3568889999999998777776665 333       3555666444456778999999999999998764 556777999


Q ss_pred             cHHHHHHHhhcC
Q 015728          363 VLTQLLLLLQSQ  374 (401)
Q Consensus       363 ~v~~L~~ll~~~  374 (401)
                      .|..|+.+++..
T Consensus       217 ~i~~Li~FiE~a  228 (257)
T PF12031_consen  217 CISHLIAFIEDA  228 (257)
T ss_pred             hHHHHHHHHHHH
Confidence            999999999776

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=91.85  E-value=8.7  Score=35.23  Aligned_cols=146  Identities=8%  Similarity=0.043  Sum_probs=95.2

Q ss_pred             CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-------cCC---c---hhHHHHHHHHHHhcCCCchh
Q 015728          201 SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-------HHN---S---EASDAGVRAFSALCSTETNR  267 (401)
Q Consensus       201 ~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-------~~~---~---~~~~~a~~aL~~Ls~~~~n~  267 (401)
                      +++.|+.|..-|..- .  +..++....+-.+.|.+..|+.=+       +..   .   .-.-+|+..|--++++++.|
T Consensus         8 ~~~~Re~Al~eLsk~-r--~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr   84 (262)
T PF04078_consen    8 NPETRENALLELSKK-R--ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHT-C--CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred             CcchHHHHHHHHHHh-h--hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence            566777665555433 1  112355666666667777665422       111   1   24556666777788999999


Q ss_pred             HHHHhcCcHHHHHHHHHhhc--cccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728          268 KTLVQEGAINGLIAYISNAL--TRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYALVKMVFRVSDHEGSENAINSL  344 (401)
Q Consensus       268 ~~iv~~G~v~~Lv~lL~~~~--~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L  344 (401)
                      ..++++...-.|-.+|....  .+-+.++-.+++++..|.+.++ .-..+..+.+.||..++ ++..|++..+-.|..++
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr-~me~GselSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR-IMEFGSELSKTVATFIL  163 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH-HHHHS-HHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH-HHHhccHHHHHHHHHHH
Confidence            99999998888888886420  1124577789999999997433 23344458899999999 56778878888899888


Q ss_pred             HHHhcC
Q 015728          345 MMICCD  350 (401)
Q Consensus       345 ~~l~~~  350 (401)
                      ..|-.+
T Consensus       164 qKIL~d  169 (262)
T PF04078_consen  164 QKILLD  169 (262)
T ss_dssp             HHHHHS
T ss_pred             HHHHcc
Confidence            776544

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.70  E-value=1.5  Score=44.87  Aligned_cols=144  Identities=8%  Similarity=0.084  Sum_probs=98.1

Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCc-hhHHHHHHHHHHhcCCC
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNS-EASDAGVRAFSALCSTE  264 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~a~~aL~~Ls~~~  264 (401)
                      ..|+=..+|.=|...-.++|.+|+..++.| +...      ....  ..++..|++++.+.. .++..|..+|..++.+ 
T Consensus       371 ~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L-a~ss------P~FA--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-  440 (823)
T KOG2259|consen  371 PSGACGALVHGLEDEFYEVRRAAVASLCSL-ATSS------PGFA--VRALDFLVDMFNDEIEVVRLKAIFALTMISVH-  440 (823)
T ss_pred             cccccceeeeechHHHHHHHHHHHHHHHHH-HcCC------CCcH--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-
Confidence            567777788777777789999999999999 6543      2222  257899999996654 5999999999998865 


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728          265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL  344 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L  344 (401)
                          ..++..-++.+.+-|.   +.++++++.....|.+.-..+-+...++     |..|++-+.+.  |.-+..-.+++
T Consensus       441 ----l~i~eeql~~il~~L~---D~s~dvRe~l~elL~~~~~~d~~~i~m~-----v~~lL~~L~ky--PqDrd~i~~cm  506 (823)
T KOG2259|consen  441 ----LAIREEQLRQILESLE---DRSVDVREALRELLKNARVSDLECIDMC-----VAHLLKNLGKY--PQDRDEILRCM  506 (823)
T ss_pred             ----heecHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHhhhC--CCCcHHHHHHH
Confidence                3345567888999999   6788888888877775544333333332     33333322222  23444566777


Q ss_pred             HHHhcCCHH
Q 015728          345 MMICCDSLQ  353 (401)
Q Consensus       345 ~~l~~~~~~  353 (401)
                      ..+.++.+.
T Consensus       507 ~~iGqnH~~  515 (823)
T KOG2259|consen  507 GRIGQNHRR  515 (823)
T ss_pred             HHHhccChh
Confidence            777766543

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.70  E-value=4.6  Score=40.69  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=108.2

Q ss_pred             HHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728          238 EIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALT-RERSLAAIAMARIEQLLAIENSKDALI  315 (401)
Q Consensus       238 ~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~~~~~~~  315 (401)
                      .+..++ +++...+..|..-|..++.++.-...++...++..|..++.+... .+.++....+.++..|-.++---...+
T Consensus        87 ~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~  166 (713)
T KOG2999|consen   87 RIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESV  166 (713)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeec
Confidence            445555 566666777888899999999999999999999999999984200 123455555666655554433222222


Q ss_pred             hCCCcHHHHHHHHH-hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728          316 NNPNGVYALVKMVF-RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       316 ~~~g~i~~Lv~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  394 (401)
                       ...+|...+..+. +--+..+-..|+..|-++.-.+...+..+.++--+..|+..++.+ +....-.|.+++..+-...
T Consensus       167 -~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~nal~~~a  244 (713)
T KOG2999|consen  167 -SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNALFRKA  244 (713)
T ss_pred             -ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHHHHhhC
Confidence             2233444444221 112335677899999999888777888888999999999999988 6666666999998877767


Q ss_pred             HHh
Q 015728          395 AEE  397 (401)
Q Consensus       395 ~e~  397 (401)
                      |++
T Consensus       245 ~~~  247 (713)
T KOG2999|consen  245 PDD  247 (713)
T ss_pred             ChH
Confidence            765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.61  E-value=0.16  Score=53.00  Aligned_cols=41  Identities=17%  Similarity=0.458  Sum_probs=35.3

Q ss_pred             CcccccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcc
Q 015728           11 HLFRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQ   55 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~   55 (401)
                      +.-+|..|...+.-|+. ..|||.|..+|++    .+...||.|..
T Consensus       839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~  880 (933)
T KOG2114|consen  839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP  880 (933)
T ss_pred             eeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence            44689999999999987 5899999999998    36678999965

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=91.55  E-value=23  Score=38.20  Aligned_cols=246  Identities=15%  Similarity=0.177  Sum_probs=133.0

Q ss_pred             hhHHHHHHhhhhhh--cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHE--ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ  170 (401)
Q Consensus        93 ~~~~~l~~~l~~~~--~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L  170 (401)
                      .++..+...|.+..  +........+-.|-..|-.-+.||+.+.+.|+++.|+..|..-..........++-+..+. ++
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~-Ii  195 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE-II  195 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH-HH
Confidence            45555555554322  2334455555555565666688999999999999999998521110000011345566665 55


Q ss_pred             HhhcCCchhh-h----hhcc-------cCCchHHHHHHhhcC----CHHHHHHHHHHHHHHHhcccchhhhhhhhccchH
Q 015728          171 KLLLVGETES-L----NLLN-------EESKMESFIVLFEHG----SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDR  234 (401)
Q Consensus       171 ~~l~~~~~~~-~----~~v~-------~~g~i~~Lv~~L~~~----~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g  234 (401)
                      ..+....... .    ....       ....|..|++.+.+.    +..+....+++|-.| +..+.  +.-..      
T Consensus       196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~L-t~G~~--e~m~~------  266 (802)
T PF13764_consen  196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFL-TYGNE--EKMDA------  266 (802)
T ss_pred             HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHH-hcCCH--HHHHH------
Confidence            5444221110 1    0010       111266667766543    567778888899888 65441  22222      


Q ss_pred             HHHHHHHHc--cC-C---chhHHHHHHHHHHhcC-C---C---chhHHHHhcCcHHHHHHHHHhhcc-----ccch----
Q 015728          235 LLREIISLV--HH-N---SEASDAGVRAFSALCS-T---E---TNRKTLVQEGAINGLIAYISNALT-----RERS----  292 (401)
Q Consensus       235 ~i~~Lv~lL--~~-~---~~~~~~a~~aL~~Ls~-~---~---~n~~~iv~~G~v~~Lv~lL~~~~~-----~~~~----  292 (401)
                      ++..+-..+  +. +   .+--+.-+..+..++. -   .   .-|..+++.|++...++.|..+-.     .+++    
T Consensus       267 Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~  346 (802)
T PF13764_consen  267 LVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEF  346 (802)
T ss_pred             HHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHH
Confidence            222223333  11 1   1111233556666652 1   1   138889999999999999864311     2222    


Q ss_pred             ----HHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcC
Q 015728          293 ----LAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCD  350 (401)
Q Consensus       293 ----~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~  350 (401)
                          ....++..|.-||.+...-+.++ ..++++.+-+ |-..+ +..+-..|=.+|-.|+.+
T Consensus       347 l~~psLp~iL~lL~GLa~gh~~tQ~~~-~~~~l~~lH~-LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  347 LSRPSLPYILRLLRGLARGHEPTQLLI-AEQLLPLLHR-LEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             hcCCcHHHHHHHHHHHHhcCHHHHHHH-HhhHHHHHHH-hhcCCCccchHHHHHHHHHHHhcC
Confidence                34457888888887665444444 4567755544 55544 334444555666666654

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.55  E-value=0.52  Score=42.37  Aligned_cols=79  Identities=11%  Similarity=0.191  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHHHhcCCCchhHHHHhcC-------cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH-HHHHhCCC
Q 015728          248 EASDAGVRAFSALCSTETNRKTLVQEG-------AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK-DALINNPN  319 (401)
Q Consensus       248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G-------~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~-~~~~~~~g  319 (401)
                      .-++.|+.+|..||..+.|..-+..-+       .+..|+++|..  .++.-.+|-|+..|.+|+..++.- ..+..+.+
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--REDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            368999999999999999887776544       44455555553  566778999999999999876544 35666889


Q ss_pred             cHHHHHHHH
Q 015728          320 GVYALVKMV  328 (401)
Q Consensus       320 ~i~~Lv~~l  328 (401)
                      +|..|+..|
T Consensus       217 ~i~~Li~Fi  225 (257)
T PF12031_consen  217 CISHLIAFI  225 (257)
T ss_pred             hHHHHHHHH
Confidence            999999943

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.54  E-value=0.36  Score=42.34  Aligned_cols=48  Identities=17%  Similarity=0.348  Sum_probs=37.1

Q ss_pred             ccccccccccC--CceEcCccccccHHhHHHHHHc-------CCCCCCCCcccCCCC
Q 015728           13 FRCPISLDLFT--DPVTLCTGQTYDRSSIEKWLAA-------GNLTCPVTMQTLHDP   60 (401)
Q Consensus        13 ~~C~iC~~~~~--~Pv~~~Cgh~fc~~Ci~~~~~~-------~~~~CP~c~~~~~~~   60 (401)
                      --|.+|.-.+.  |-+.+-|-|.|.+.|+.+|...       ....||.|...+-+.
T Consensus        51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp  107 (299)
T KOG3970|consen   51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP  107 (299)
T ss_pred             CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence            35888988664  5566889999999999999774       246799998776543

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.52  E-value=0.1  Score=52.63  Aligned_cols=39  Identities=36%  Similarity=0.660  Sum_probs=31.6

Q ss_pred             CCccccccccccc----CCceEcCccccccHHhHHHHHHcCCCCCC
Q 015728           10 PHLFRCPISLDLF----TDPVTLCTGQTYDRSSIEKWLAAGNLTCP   51 (401)
Q Consensus        10 ~~~~~C~iC~~~~----~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP   51 (401)
                      .+.+.|+||...|    ..||.+.|||+.|+.|.+..+..   +||
T Consensus         9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp   51 (861)
T KOG3161|consen    9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP   51 (861)
T ss_pred             HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence            4568899997666    46999999999999999887663   466

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=91.44  E-value=5.7  Score=42.34  Aligned_cols=170  Identities=16%  Similarity=0.177  Sum_probs=109.6

Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc---cCCchhHHHHHHHHHHhcCCC
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV---HHNSEASDAGVRAFSALCSTE  264 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL---~~~~~~~~~a~~aL~~Ls~~~  264 (401)
                      +.+..|+.+....+.++......+|...+..+.   +....+..  -+.|.++.++   ++++.+...+-..+..|+...
T Consensus       530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dp---ef~as~~s--kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~  604 (1005)
T KOG2274|consen  530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDP---EFAASMES--KICPLTINLFLKYSEDPQVASLAQDLFEELLQIA  604 (1005)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHhccCh---hhhhhhhc--chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            334455555555566777777777777744444   44444432  3567777766   456778888888888999877


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhc-cccchHHHHHHHHHHHHhCCHh--hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHH
Q 015728          265 TNRKTLVQEGAINGLIAYISNAL-TRERSLAAIAMARIEQLLAIEN--SKDALINNPNGVYALVKMVFRVSDHEGSENAI  341 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~~~~~a~~~L~~La~~~~--~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~  341 (401)
                      .|...+.+. .||.|+..|.... .........|+.+|.-+.+...  --..+.  .-+.|++++..+.+++...-+++-
T Consensus       605 ~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~--~~~FpaVak~tlHsdD~~tlQ~~~  681 (1005)
T KOG2274|consen  605 ANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI--CYAFPAVAKITLHSDDHETLQNAT  681 (1005)
T ss_pred             HhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH--HHHhHHhHhheeecCChHHHHhHH
Confidence            777776654 8999999997310 1125677778888886665322  112222  146889999666777778888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCcHH
Q 015728          342 NSLMMICCDSLQAREEAICAGVLT  365 (401)
Q Consensus       342 ~~L~~l~~~~~~~~~~~~~~g~v~  365 (401)
                      .+|..+-..+.+....=..+++.-
T Consensus       682 EcLra~Is~~~eq~~t~~~e~g~~  705 (1005)
T KOG2274|consen  682 ECLRALISVTLEQLLTWHDEPGHN  705 (1005)
T ss_pred             HHHHHHHhcCHHHHHhhccCCCcc
Confidence            999888777654433333444443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=91.30  E-value=9.9  Score=35.86  Aligned_cols=219  Identities=13%  Similarity=0.106  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc-cCCc
Q 015728          111 TKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN-EESK  189 (401)
Q Consensus       111 ~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~-~~g~  189 (401)
                      .+.-|++.+.++.-..+..+....+.-.-..++.+++..-..      .++|.+.+- +.+.++.+..-. +.+. --..
T Consensus       165 Trlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~------~qlQY~SL~-~iw~lTf~~~~a-qdi~K~~dl  236 (432)
T COG5231         165 TRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGV------KQLQYNSLI-IIWILTFSKECA-QDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhh------hhhHHHHHH-HHHHHhcCHHHH-HHHHHHHHH
Confidence            567788888888877654444444555667888888765543      679999999 888888765433 3331 2245


Q ss_pred             hHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhc---cchHHHHHHHHHc-cC---CchhHHHHHHH-----
Q 015728          190 MESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLG---KDDRLLREIISLV-HH---NSEASDAGVRA-----  256 (401)
Q Consensus       190 i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~---~~~g~i~~Lv~lL-~~---~~~~~~~a~~a-----  256 (401)
                      |..|+.+.+.... .+-.-+..++.+++...+     |..|-   .. |-+.+-|.+| ..   +.+.+..--..     
T Consensus       237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~p-----K~~I~~~lll-~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSP-----KGYIFSPLLL-NDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cchhhhhHhh-cchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            7777777765433 344556667777734232     22222   21 3245666666 21   22221111100     


Q ss_pred             ------------HHH-----hcCC---------CchhHHHHhc--CcHHHHHHHHHhhccccch-HHHHHHHHHHHHhC-
Q 015728          257 ------------FSA-----LCST---------ETNRKTLVQE--GAINGLIAYISNALTRERS-LAAIAMARIEQLLA-  306 (401)
Q Consensus       257 ------------L~~-----Ls~~---------~~n~~~iv~~--G~v~~Lv~lL~~~~~~~~~-~~~~a~~~L~~La~-  306 (401)
                                  +..     |+..         ++|...+.+.  .++..|.++|+   ...+. ....|+.=|..+.+ 
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq---~n~~nt~i~vAc~Di~~~Vr~  387 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ---SNNPNTWICVACSDIFQLVRA  387 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh---cCCCCceEeeeHhhHHHHHHh
Confidence                        111     1111         1266666653  47889999998   33333 55667777777774 


Q ss_pred             CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          307 IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       307 ~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                      .||++..+. ..|+=..+++ ++++++++++-.|+.++..+-
T Consensus       388 ~PE~~~vl~-Kyg~k~~im~-L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         388 SPEINAVLS-KYGVKEIIMN-LINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             CchHHHHHH-HhhhHHHHHH-HhcCCCchhhHHHHHHHHHHH
Confidence            688888886 8899999999 678888899999999987754

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.29  E-value=8.2  Score=42.01  Aligned_cols=254  Identities=15%  Similarity=0.150  Sum_probs=141.8

Q ss_pred             HHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH
Q 015728          116 VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV  195 (401)
Q Consensus       116 ~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~  195 (401)
                      ...|-.+.+.+.+|...+.++.++..++.+|-+..          -+-..+. ++..|...+...   + .+..+-.+++
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflinde----------hRSslLr-ivscLitvdpkq---v-hhqelmalVd  727 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLINDE----------HRSSLLR-IVSCLITVDPKQ---V-HHQELMALVD  727 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeechH----------HHHHHHH-HHHHHhccCccc---c-cHHHHHHHHH
Confidence            45678888999999999999999988888884432          1222233 444444333221   1 3345677888


Q ss_pred             HhhcCCH------------HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc---cCC--------chhHHH
Q 015728          196 LFEHGSC------------SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV---HHN--------SEASDA  252 (401)
Q Consensus       196 ~L~~~~~------------~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL---~~~--------~~~~~~  252 (401)
                      .|++|-.            ..+.....+++.++..+.   ..+...+++.|+ ..|...|   .+-        .-....
T Consensus       728 tLksgmvt~IsgeqyklhfsllcdlmGalwrivgvng---saqrvFgeatGF-slLlttLhtfqgftelhdesDlcvyik  803 (2799)
T KOG1788|consen  728 TLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNG---SAQRVFGEATGF-SLLLTTLHTFQGFTELHDESDLCVYIK  803 (2799)
T ss_pred             HHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCc---hheeehhccccH-HHHHHHHHHhccchhcCCchhhhhHHH
Confidence            8887421            122334445666633333   667777887554 5555555   221        112222


Q ss_pred             HHHHHHH-----hcCCCchhHHHH-------------hcC---------cHHHHHHHHHhh-ccccchHHHHHHHHHHHH
Q 015728          253 GVRAFSA-----LCSTETNRKTLV-------------QEG---------AINGLIAYISNA-LTRERSLAAIAMARIEQL  304 (401)
Q Consensus       253 a~~aL~~-----Ls~~~~n~~~iv-------------~~G---------~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~L  304 (401)
                      -...|+.     ++.++.|+.++-             +.|         .|..|.++--.. -.+.-...-.|+..+..+
T Consensus       804 lfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfel  883 (2799)
T KOG1788|consen  804 LFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFEL  883 (2799)
T ss_pred             HHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhc
Confidence            2333332     235666776542             233         122222211100 000000111233333333


Q ss_pred             hC-----------CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh--
Q 015728          305 LA-----------IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL--  371 (401)
Q Consensus       305 a~-----------~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll--  371 (401)
                      -.           -...++.+. ..|++..+++.++- ..++.+-.-++.|-+++..++...+..-..|.++.|++++  
T Consensus       884 ednifavntPsGqfnpdk~~iy-nagavRvlirslLl-nypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiyp  961 (2799)
T KOG1788|consen  884 EDNIFAVNTPSGQFNPDKQKIY-NAGAVRVLIRSLLL-NYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYP  961 (2799)
T ss_pred             ccceeeeccCCCCcCchHhhhc-ccchhHHHHHHHHh-hChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhh
Confidence            21           112345665 78999999996654 4557888899999999988887776777889999998876  


Q ss_pred             -hcCCCHHHHHHHHHHHHHHH
Q 015728          372 -QSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       372 -~~~~~~~~~~~A~~~L~~l~  391 (401)
                       .+| +.---..|.+++.+|.
T Consensus       962 flsg-sspfLshalkIvemLg  981 (2799)
T KOG1788|consen  962 FLSG-SSPFLSHALKIVEMLG  981 (2799)
T ss_pred             hhcC-CchHhhccHHHHHHHh
Confidence             244 4445556666666554

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.28  E-value=2.9  Score=43.74  Aligned_cols=173  Identities=16%  Similarity=0.203  Sum_probs=101.2

Q ss_pred             HhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcC-CCc---------
Q 015728          196 LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCS-TET---------  265 (401)
Q Consensus       196 ~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~-~~~---------  265 (401)
                      +|.+.++.+...++.+.+++ +-..       .   ...++.+|+++|+++.+.+...+..+..++. .+.         
T Consensus       295 Ll~S~n~sVVmA~aql~y~l-AP~~-------~---~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsF  363 (968)
T KOG1060|consen  295 LLQSRNPSVVMAVAQLFYHL-APKN-------Q---VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSF  363 (968)
T ss_pred             HHhcCCcHHHHHHHhHHHhh-CCHH-------H---HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhce
Confidence            45678888889999999999 5321       1   1367899999998777777776666666652 221         


Q ss_pred             -------hh---------HHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHH
Q 015728          266 -------NR---------KTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMV  328 (401)
Q Consensus       266 -------n~---------~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l  328 (401)
                             ..         ..++.++-|..+++=|..- .+.+.++...++.+|...+..   -..+  ..-+...||. +
T Consensus       364 fv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~---~~sv--~~tCL~gLv~-L  437 (968)
T KOG1060|consen  364 FVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASR---IGSV--TDTCLNGLVQ-L  437 (968)
T ss_pred             EeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh---hCch--hhHHHHHHHH-H
Confidence                   11         1233444455554444221 134445666666666655531   1111  3456778888 4


Q ss_pred             HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728          329 FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL  390 (401)
Q Consensus       329 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l  390 (401)
                      ++..+..+...++.++..|-..++....+     .+..|..+++.--.+.+|....|++...
T Consensus       438 lsshde~Vv~eaV~vIk~Llq~~p~~h~~-----ii~~La~lldti~vp~ARA~IiWLige~  494 (968)
T KOG1060|consen  438 LSSHDELVVAEAVVVIKRLLQKDPAEHLE-----ILFQLARLLDTILVPAARAGIIWLIGEY  494 (968)
T ss_pred             HhcccchhHHHHHHHHHHHHhhChHHHHH-----HHHHHHHHhhhhhhhhhhceeeeeehhh
Confidence            66666677778888888887766533322     3345555554333445555555544433

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.18  E-value=0.63  Score=37.26  Aligned_cols=72  Identities=13%  Similarity=0.098  Sum_probs=55.0

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .+..|+++|..+.++.....|+.=|..++.+.++.+..+-+.|+=..++.||.++ ++.+|..|...+..+-.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            5678888443444555666677777888888888887788999999999999987 99999999999887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=91.14  E-value=0.37  Score=47.40  Aligned_cols=185  Identities=9%  Similarity=-0.011  Sum_probs=103.3

Q ss_pred             cChHHHHHHHHHHHHHHhc--CchhhhHH-HhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc----hh
Q 015728          107 ATLETKLQIVQKIHVVLRE--SPPASNCL-IQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE----TE  179 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~--~~~~r~~i-~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~----~~  179 (401)
                      .+++.+..-...+|.+.-.  ++.-|... .-..+.......|.+..-.        ++++++| .+.|++..=    +.
T Consensus       400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln--------~r~Kaaw-tlgnITdAL~~~~Ps  470 (728)
T KOG4535|consen  400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLN--------VRAKAAW-SLGNITDALIVNMPT  470 (728)
T ss_pred             cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHh--------HHHHHHH-HhhhhHHHHHcCCCC
Confidence            3555555555555555421  22222222 1233344444555554433        7899999 888887210    00


Q ss_pred             hhhhcccC-C-chHHHHHHhhc---CCHHHHHHHHHHHHHHHhcc-cc--hhhhhhhhccchHHHHHHHHHc--cCCchh
Q 015728          180 SLNLLNEE-S-KMESFIVLFEH---GSCSIKKRLCHLVEVIISSS-HE--TKELCCKLGKDDRLLREIISLV--HHNSEA  249 (401)
Q Consensus       180 ~~~~v~~~-g-~i~~Lv~~L~~---~~~~~~~~aa~~L~~l~s~~-~~--~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~  249 (401)
                      .+..-... | .+..++.....   .+..++.+|..+|+++ ... ++  ...++..+   +|.+..++.-.  .+..++
T Consensus       471 ~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnl-lQvlq~i~~~~~~e~~---~~~~~~l~~~v~~~~~~kV  546 (728)
T KOG4535|consen  471 PDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNL-LQFLQPIEKPTFAEII---EESIQALISTVLTEAAMKV  546 (728)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH-HHHHHHhhhccHHHHH---HHHHHhcccceeccccccc
Confidence            00000000 1 12233322211   2457889999999998 432 21  01233333   24444444433  456689


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          250 SDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       250 ~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      +.+|..+|.||..++.-+-+=.+  .-+++.|..|+.+  ..+-.++.+|+++|..-..
T Consensus       547 ~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~--~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  547 RWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS--CKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             chHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH--hccceEeehhhhhhcCCCC
Confidence            99999999999998875433322  3378889999986  5788899999999886664

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=91.07  E-value=14  Score=34.84  Aligned_cols=170  Identities=16%  Similarity=0.178  Sum_probs=107.4

Q ss_pred             CchHHHH-HHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728          188 SKMESFI-VLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       188 g~i~~Lv-~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                      +.+..|+ ..+++.+..+|+.|...|+.. +..+     + .++.  ..++.+...+ .++.+++..|+.+|..+....+
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~-~Lld-----~-~~a~--~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g   96 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLC-CLLD-----K-ELAK--EHLPLFLQALQKDDEEVKITALKALFDLLLTHG   96 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHhC-----h-HHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            4455555 566888999999999999998 7654     1 2222  3467777777 4566799999999999875333


Q ss_pred             --hhHH-------HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC---C
Q 015728          266 --NRKT-------LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS---D  333 (401)
Q Consensus       266 --n~~~-------iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~---~  333 (401)
                        .-..       .-....+..+.+.|.   +.+.+++..|+..++-|--.+....    .+..+..|+-+-+...   +
T Consensus        97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~  169 (298)
T PF12719_consen   97 IDIFDSESDNDESVDSKSLLKILTKFLD---SENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDN  169 (298)
T ss_pred             chhccchhccCccchHhHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCc
Confidence              1111       112346667777777   5577888889888887664332211    0233445555334432   2


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728          334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ  374 (401)
Q Consensus       334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~  374 (401)
                      ...++.-...+-..|..+++. ++.+..+.++.+..+....
T Consensus       170 ~~LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  170 QRLRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            344554444555566665544 4788888888888887665

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.81  E-value=0.2  Score=46.19  Aligned_cols=49  Identities=27%  Similarity=0.545  Sum_probs=38.7

Q ss_pred             CCCCcccccccccccC---CceEcCccccccHHhHHHHHHcC--CCCCCCCccc
Q 015728            8 TIPHLFRCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAG--NLTCPVTMQT   56 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~--~~~CP~c~~~   56 (401)
                      ..+.-|.||+-.+.-.   .|+.+.|||..-...+.+.-+.|  .+.||.|...
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~  385 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM  385 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence            3456799999777654   48889999999999988877665  4889999543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.72  E-value=25  Score=37.18  Aligned_cols=247  Identities=11%  Similarity=0.113  Sum_probs=118.6

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh-------
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES-------  180 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~-------  180 (401)
                      +.-...+|+..+..+.-.++   +.+.-  ++..|--+++++...        .+..|.. +|+.++....+.       
T Consensus       258 ~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~flssp~~~--------lRfaAvR-tLnkvAm~~P~~v~~cN~e  323 (865)
T KOG1078|consen  258 SEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLSSPKVA--------LRFAAVR-TLNKVAMKHPQAVTVCNLD  323 (865)
T ss_pred             hHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhcCcHHH--------HHHHHHH-HHHHHHHhCCccccccchh
Confidence            34466788888887765543   22222  677888888887654        7888888 999887544321       


Q ss_pred             -hhhcccC---CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHH
Q 015728          181 -LNLLNEE---SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRA  256 (401)
Q Consensus       181 -~~~v~~~---g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~a  256 (401)
                       -.++-+.   -+-..+-.+|+.|+.+....-..-+.++++.-+  |++|-.+++   +|..|.....   .-+.--...
T Consensus       324 lE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvd---ai~sLc~~fp---~k~~~~m~F  395 (865)
T KOG1078|consen  324 LESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVD---AIRSLCLKFP---RKHTVMMNF  395 (865)
T ss_pred             HHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHH---HHHHHHhhcc---HHHHHHHHH
Confidence             1112111   123334456677766555544444444423222  255544432   2333332221   011111122


Q ss_pred             HHHhcCCC---chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHH------HhCCC--------
Q 015728          257 FSALCSTE---TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDAL------INNPN--------  319 (401)
Q Consensus       257 L~~Ls~~~---~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~------~~~~g--------  319 (401)
                      |.++-..+   +-+..     .|..++....    ..++.++.++.-|+..-.+-+.+...      .+.+|        
T Consensus       396 L~~~Lr~eGg~e~K~a-----ivd~Ii~iie----~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Psk  466 (865)
T KOG1078|consen  396 LSNMLREEGGFEFKRA-----IVDAIIDIIE----ENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSK  466 (865)
T ss_pred             HHHHHHhccCchHHHH-----HHHHHHHHHH----hCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcch
Confidence            22222111   11222     2223333333    12333444444333333222211110      01111        


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .|...... .-..+..++-.|+.+|..+...++..     ...+...|...+.+. ++++|+.|...|+.+..
T Consensus       467 yir~iyNR-viLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~-DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  467 YIRFIYNR-VILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDS-DDEVRDRATFYLKNLEE  532 (865)
T ss_pred             hhHHHhhh-hhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCc-hHHHHHHHHHHHHHhhh
Confidence            12222221 11234467777888888877443322     233445556666565 89999999999999885

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=90.70  E-value=8.7  Score=39.33  Aligned_cols=101  Identities=16%  Similarity=0.180  Sum_probs=56.1

Q ss_pred             HHHHHHccCCchhHHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHH
Q 015728          237 REIISLVHHNSEASDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDAL  314 (401)
Q Consensus       237 ~~Lv~lL~~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~  314 (401)
                      ..++...+++...++-|+..|.... ..|+-...     ++..++.|..   +.+..++..|+..|-.+|.+. +.-..+
T Consensus        26 ~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcE---Ded~~iR~~aik~lp~~ck~~~~~v~kv   97 (556)
T PF05918_consen   26 KEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCE---DEDVQIRKQAIKGLPQLCKDNPEHVSKV   97 (556)
T ss_dssp             HHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT----SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh---cccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence            3444444566667777777777655 45554443     5667788887   677778888888888888753 333444


Q ss_pred             HhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH
Q 015728          315 INNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL  352 (401)
Q Consensus       315 ~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~  352 (401)
                            +..|++ |+...++.-....-.+|..|-..++
T Consensus        98 ------aDvL~Q-lL~tdd~~E~~~v~~sL~~ll~~d~  128 (556)
T PF05918_consen   98 ------ADVLVQ-LLQTDDPVELDAVKNSLMSLLKQDP  128 (556)
T ss_dssp             ------HHHHHH-HTT---HHHHHHHHHHHHHHHHH-H
T ss_pred             ------HHHHHH-HHhcccHHHHHHHHHHHHHHHhcCc
Confidence                  346777 4555554555555566666655443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=90.56  E-value=0.27  Score=31.75  Aligned_cols=39  Identities=13%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             ccccccccCCceEc---CccccccHHhHHHHHHcCCC-CCCCC
Q 015728           15 CPISLDLFTDPVTL---CTGQTYDRSSIEKWLAAGNL-TCPVT   53 (401)
Q Consensus        15 C~iC~~~~~~Pv~~---~Cgh~fc~~Ci~~~~~~~~~-~CP~c   53 (401)
                      |.+|.++...-+.=   .|+-.+-..|+..||+.... .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67899988877763   49988999999999986443 59987

; PDB: 3NW0_A 2CT0_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=90.53  E-value=0.38  Score=28.45  Aligned_cols=29  Identities=7%  Similarity=0.096  Sum_probs=25.1

Q ss_pred             cHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          275 AINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       275 ~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      .+|.+++++.   +++.+++..|+.+|..++.
T Consensus         1 llp~l~~~l~---D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLN---DPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT----SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcC---CCCHHHHHHHHHHHHHHHh
Confidence            3789999999   7899999999999998874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.41  E-value=9.8  Score=42.97  Aligned_cols=275  Identities=14%  Similarity=0.237  Sum_probs=146.9

Q ss_pred             hhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchh
Q 015728          102 LQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETE  179 (401)
Q Consensus       102 l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~  179 (401)
                      |...+.++..|+.|+..+..++...   ++.+..  --.||.|...=-+++        ..+|..-.. +-+.|..+.  
T Consensus       964 LAnh~A~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~--------~~Vq~aM~s-IW~~Li~D~-- 1029 (1702)
T KOG0915|consen  964 LANHNATWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPD--------KKVQDAMTS-IWNALITDS-- 1029 (1702)
T ss_pred             HhhhhchhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCc--------HHHHHHHHH-HHHHhccCh--
Confidence            3445556677777888887777654   222221  125777777655555        346554333 555555332  


Q ss_pred             hhhhccc--CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-Cch---hHHHH
Q 015728          180 SLNLLNE--ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSE---ASDAG  253 (401)
Q Consensus       180 ~~~~v~~--~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~---~~~~a  253 (401)
                       +..+.+  ...+..|+.-|.+....+|+.++.+|..| -...++++..+.+-   ..+..+.+.+++ ...   +-..+
T Consensus      1030 -k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL-l~g~~~~~~~e~lp---elw~~~fRvmDDIKEsVR~aa~~~ 1104 (1702)
T KOG0915|consen 1030 -KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL-LQGRPFDQVKEKLP---ELWEAAFRVMDDIKESVREAADKA 1104 (1702)
T ss_pred             -HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HcCCChHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             223211  12344555555666778999999999999 44444556666552   456666666643 222   44445


Q ss_pred             HHHHHHhcC---CCchhHHHHhcCcHHHHHHHHHh-h-ccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHH
Q 015728          254 VRAFSALCS---TETNRKTLVQEGAINGLIAYISN-A-LTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMV  328 (401)
Q Consensus       254 ~~aL~~Ls~---~~~n~~~iv~~G~v~~Lv~lL~~-~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l  328 (401)
                      +.+|..|+.   +..|-..-  ..++..++..|-+ + .+.-.+++.-++.++.-|+.+.....+-- -+..||.|+. .
T Consensus      1105 ~~~lsKl~vr~~d~~~~~~~--~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~-~ 1180 (1702)
T KOG0915|consen 1105 ARALSKLCVRICDVTNGAKG--KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLN-A 1180 (1702)
T ss_pred             HHHHHHHHhhhcccCCcccH--HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHH-H
Confidence            556666652   22221111  1133333333321 1 12346788899999999997655433332 3346666666 3


Q ss_pred             HhcCChh-----------HHHHHHHHH-HHHhcCCH--HHHHH-------HHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728          329 FRVSDHE-----------GSENAINSL-MMICCDSL--QAREE-------AICAGVLTQLLLLLQSQCSNRTKTKARMLL  387 (401)
Q Consensus       329 ~~~~~~~-----------~~~~a~~~L-~~l~~~~~--~~~~~-------~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L  387 (401)
                      ...-++.           ....|+..+ .+.++.++  +....       =+-+..+|.+.++++.+=.-.+|-.++..+
T Consensus      1181 ~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI 1260 (1702)
T KOG0915|consen 1181 YSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFI 1260 (1702)
T ss_pred             ccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHH
Confidence            3322211           112222222 23344333  11111       122567888899998774456787888877


Q ss_pred             HHHHHhhHHhhc
Q 015728          388 KLLRSKWAEELK  399 (401)
Q Consensus       388 ~~l~~~~~e~~~  399 (401)
                      -+|....+-|.+
T Consensus      1261 ~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1261 SLLVQRLGSEMT 1272 (1702)
T ss_pred             HHHHHHhccccC
Confidence            777766665543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=90.37  E-value=11  Score=32.52  Aligned_cols=90  Identities=16%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH-H
Q 015728          159 VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL-R  237 (401)
Q Consensus       159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i-~  237 (401)
                      +.++.+++. +++-|+...++   ++  ...++.+...|+++++.+|..|..+|.+|+.. +   -.     ...|-+ .
T Consensus         2 ~~vR~n~i~-~l~DL~~r~~~---~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d---~i-----k~k~~l~~   66 (178)
T PF12717_consen    2 PSVRNNAII-ALGDLCIRYPN---LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D---MI-----KVKGQLFS   66 (178)
T ss_pred             HHHHHHHHH-HHHHHHHhCcH---HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C---ce-----eehhhhhH
Confidence            568888888 88877644332   33  24689999999999999999999999999332 2   11     112433 5


Q ss_pred             HHHHHc-cCCchhHHHHHHHHHHhcCC
Q 015728          238 EIISLV-HHNSEASDAGVRAFSALCST  263 (401)
Q Consensus       238 ~Lv~lL-~~~~~~~~~a~~aL~~Ls~~  263 (401)
                      .++.++ +++++++..|..++..+...
T Consensus        67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   67 RILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            666666 56778999999999998864

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=90.02  E-value=24  Score=35.99  Aligned_cols=267  Identities=11%  Similarity=0.100  Sum_probs=147.2

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHH-HHH-HhccCCcccchhhhHHHHHHHHHHHHHhhcC-----Cchhh
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPL-LLK-QLFGKAESKFSQVYVQFVEESLSCVQKLLLV-----GETES  180 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~-Lv~-lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~-----~~~~~  180 (401)
                      ....+++++..+...|..... ...+...+.|-. ++. -++.+.       +..++-.|+.|+...+-.     ..++.
T Consensus       147 p~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et-------~~avRLaaL~aL~dsl~fv~~nf~~E~e  218 (858)
T COG5215         147 PVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNET-------TSAVRLAALKALMDSLMFVQGNFCYEEE  218 (858)
T ss_pred             chHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCc-------hHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence            445788899999888866443 333333443322 222 222222       245777777743332221     11111


Q ss_pred             hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH-HHHc-cCCchhHHHHHHHHH
Q 015728          181 LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI-ISLV-HHNSEASDAGVRAFS  258 (401)
Q Consensus       181 ~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L-v~lL-~~~~~~~~~a~~aL~  258 (401)
                      +..     .++...+.-+.++.+++..|...|..|....=   ..-+.+.+  .++-.| .+-+ +.+.++...|...-.
T Consensus       219 rNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY---~fm~~ymE--~aL~alt~~~mks~nd~va~qavEfWs  288 (858)
T COG5215         219 RNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYY---KFMQSYME--NALAALTGRFMKSQNDEVAIQAVEFWS  288 (858)
T ss_pred             hch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            222     24444566677788899888888888743221   22222222  222222 2333 445667777766554


Q ss_pred             HhcCCCc-----------------hhHHHHhcCcHHHHHHHHHhhc-cccc---hHHHHHHHHHHHHhCCHhhHHHHHhC
Q 015728          259 ALCSTET-----------------NRKTLVQEGAINGLIAYISNAL-TRER---SLAAIAMARIEQLLAIENSKDALINN  317 (401)
Q Consensus       259 ~Ls~~~~-----------------n~~~iv~~G~v~~Lv~lL~~~~-~~~~---~~~~~a~~~L~~La~~~~~~~~~~~~  317 (401)
                      .+|..+-                 +-.+..-++++|.|+.||.+.+ +.+.   ..-..|...|-..+..-.  ..++ +
T Consensus       289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~-~  365 (858)
T COG5215         289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIM-R  365 (858)
T ss_pred             HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhH-H
Confidence            4442110                 1111223458999999997421 1111   223334444444432111  1222 1


Q ss_pred             CCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          318 PNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       318 ~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      +  |-.+|+-=++..+-..++.|+.++.++-.+..+....-+-..++|.+..+|.+. .-.+|+.++|.+..++.|.++-
T Consensus       366 p--Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~  442 (858)
T COG5215         366 P--VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMI  442 (858)
T ss_pred             H--HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHh
Confidence            1  334454334455557889999999998876544444556677888888888654 7899999999999999988876


Q ss_pred             h
Q 015728          398 L  398 (401)
Q Consensus       398 ~  398 (401)
                      +
T Consensus       443 i  443 (858)
T COG5215         443 I  443 (858)
T ss_pred             c
Confidence            5

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=89.92  E-value=5.4  Score=36.61  Aligned_cols=98  Identities=17%  Similarity=0.184  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHHHh-CCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728          292 SLAAIAMARIEQLL-AIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL  370 (401)
Q Consensus       292 ~~~~~a~~~L~~La-~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l  370 (401)
                      .....|+.+|.-++ -++..|..+. +..++..|+.++-....+..+-.++.+|..+.-+++.....+-+.+|+..++.+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~-r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFH-REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHh-hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            34566778888777 4777777775 889999999954244567889999999988887777777799999999999999


Q ss_pred             hhcCCC-HHHHHHHHHHHHHH
Q 015728          371 LQSQCS-NRTKTKARMLLKLL  390 (401)
Q Consensus       371 l~~~~~-~~~~~~A~~~L~~l  390 (401)
                      +++... ..+|-+....|...
T Consensus       185 lk~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             HccccccHHHhHHHHHHHHHH
Confidence            987643 46777777666543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=89.63  E-value=28  Score=36.11  Aligned_cols=189  Identities=12%  Similarity=0.146  Sum_probs=102.9

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCchhHHHHHHHHHHhcCCCchhHHHHhc
Q 015728          194 IVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQE  273 (401)
Q Consensus       194 v~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~  273 (401)
                      ++.+..-..+.+--|..+|+.++...+-+...+..... ...+..++..+..++..+..++++|.|+..++.++.-+...
T Consensus       550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~-~~~~~~li~~~~~~~an~ll~vR~L~N~f~~~~g~~~~~s~  628 (745)
T KOG0301|consen  550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEG-QNLVGTLIPILNADPANQLLVVRCLANLFSNPAGRELFMSR  628 (745)
T ss_pred             HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhh-hHHHHhhhcccccchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34445556677777777777773332211122222111 13555566666666778899999999999998888887754


Q ss_pred             CcHHHHHHHHHhhccccchHHHHHHHHHH-HHhCCHhhHHHHHhCCCcHHHHHHHHHhc----CChhHHHHHHHHHHHHh
Q 015728          274 GAINGLIAYISNALTRERSLAAIAMARIE-QLLAIENSKDALINNPNGVYALVKMVFRV----SDHEGSENAINSLMMIC  348 (401)
Q Consensus       274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~-~La~~~~~~~~~~~~~g~i~~Lv~~l~~~----~~~~~~~~a~~~L~~l~  348 (401)
                        ...++..+..+...+..-...|.++|+ |++..   ..+-..+.|+.+.|..++..-    .+-++.-..+.||.+|+
T Consensus       629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~  703 (745)
T KOG0301|consen  629 --LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLM  703 (745)
T ss_pred             --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhc
Confidence              333444333221233333344444433 33321   001111235555555543221    22234555677778888


Q ss_pred             cCCHHHHHHHHHcCcHHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 015728          349 CDSLQAREEAICAGVLTQLLLLLQSQ-CSNRTKTKARMLLKL  389 (401)
Q Consensus       349 ~~~~~~~~~~~~~g~v~~L~~ll~~~-~~~~~~~~A~~~L~~  389 (401)
                      ..+...+ .+.+.-.+..+..-+++- ..+..+..|..+|++
T Consensus       704 t~~~~~~-~~A~~~~v~sia~~~~~~~~~~~~k~~a~~il~~  744 (745)
T KOG0301|consen  704 TVDASVI-QLAKNRSVDSIAKKLKEAVSNPSGKNIARDILSL  744 (745)
T ss_pred             cccHHHH-HHHHhcCHHHHHHHHHHhccCchhhHHHHHHHhc
Confidence            8765554 555555667777766543 345666666666654

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=89.57  E-value=3.7  Score=29.82  Aligned_cols=67  Identities=15%  Similarity=-0.014  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 015728          294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAG  362 (401)
Q Consensus       294 ~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g  362 (401)
                      .+.|++++.+++..+.+-..+. +.+.|+.++++....+....+--|..+|..+++. .+-.+.+-+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            4679999999999988888884 7899999999555556667888899999988876 45554444443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=89.16  E-value=3.1  Score=35.99  Aligned_cols=92  Identities=12%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEES  188 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g  188 (401)
                      +..|..++..+..++..-+..-+.     .+|.+...|++++        +.++..|+. +|..|...+--+   + +..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~--------~~VR~~al~-~Ls~Li~~d~ik---~-k~~   63 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDED--------PLVRKTALL-VLSHLILEDMIK---V-KGQ   63 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCC--------HHHHHHHHH-HHHHHHHcCcee---e-hhh
Confidence            567888999999999877743322     4889999999887        459999999 777776433111   1 222


Q ss_pred             chHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 015728          189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSS  219 (401)
Q Consensus       189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~  219 (401)
                      .+..++.++...+++++..|...+..+ +..
T Consensus        64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~-~~~   93 (178)
T PF12717_consen   64 LFSRILKLLVDENPEIRSLARSFFSEL-LKK   93 (178)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHH-HHh
Confidence            348888888888999999999999999 543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=89.13  E-value=29  Score=35.63  Aligned_cols=134  Identities=10%  Similarity=0.099  Sum_probs=82.8

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      -.......|....++..+++-|.+-|....+.-|.-...-     |..++.|..+.+        ..++..|+. -|-.+
T Consensus        21 ~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed--------~~iR~~aik-~lp~~   86 (556)
T PF05918_consen   21 HEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDED--------VQIRKQAIK-GLPQL   86 (556)
T ss_dssp             GHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SS--------HHHHHHHHH-HGGGG
T ss_pred             CHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhccc--------HHHHHHHHH-hHHHH
Confidence            3455666677667889999999999999999988665544     778899988776        449999999 88888


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----cCCchh
Q 015728          174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----HHNSEA  249 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~~~~~~  249 (401)
                      +.++.+...-     .+..|+.+|.+.+......+-.+|..|...+.            .|.+..|..-+    .++..+
T Consensus        87 ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~------------k~tL~~lf~~i~~~~~~de~~  149 (556)
T PF05918_consen   87 CKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP------------KGTLTGLFSQIESSKSGDEQV  149 (556)
T ss_dssp             --T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHH---HS-HHH
T ss_pred             HHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHhcccCchHH
Confidence            8665433222     35678889988877666555556655523322            23444444433    244557


Q ss_pred             HHHHHHHHH
Q 015728          250 SDAGVRAFS  258 (401)
Q Consensus       250 ~~~a~~aL~  258 (401)
                      ++.+...|.
T Consensus       150 Re~~lkFl~  158 (556)
T PF05918_consen  150 RERALKFLR  158 (556)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887775

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=89.11  E-value=7.8  Score=32.78  Aligned_cols=133  Identities=14%  Similarity=0.154  Sum_probs=83.6

Q ss_pred             CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHh-CCHhhHHHHHhCCCcHHHH
Q 015728          246 NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLL-AIENSKDALINNPNGVYAL  324 (401)
Q Consensus       246 ~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La-~~~~~~~~~~~~~g~i~~L  324 (401)
                      ..+.+..++-++..+-  +..+...-+ -+-..+-.++.   .++.+-...+..+|..|= ..++-...+...+|..+.+
T Consensus        18 ~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~---~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   18 PEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLD---EGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             SCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHC---CHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             CHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHc---cccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            3457777777777662  223333222 12333333444   444556677888887776 4567667777799999999


Q ss_pred             HHHHH-hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHH-HHHHHHHH
Q 015728          325 VKMVF-RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNR-TKTKARML  386 (401)
Q Consensus       325 v~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~-~~~~A~~~  386 (401)
                      +.++. ...+...+..++.+|..=| .+.++| ..+...+++.|-.+.+.+.++. .|..|+-.
T Consensus        92 ~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~  153 (157)
T PF11701_consen   92 LPLASRKSKDRKVQKAALELLSAAC-IDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVG  153 (157)
T ss_dssp             HHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHHH-ccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence            99544 1556677777888887644 456666 7777788899999996553555 56555543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.10  E-value=0.11  Score=46.37  Aligned_cols=47  Identities=11%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             cccccccccc-CCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCC
Q 015728           13 FRCPISLDLF-TDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI   62 (401)
Q Consensus        13 ~~C~iC~~~~-~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~   62 (401)
                      ..|..|...- .+|.- +.|+|.||..|.....   ...||.|++++....+
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l   52 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQL   52 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeec
Confidence            4577676522 45554 5899999999975322   2379999998654333

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.92  E-value=12  Score=39.02  Aligned_cols=115  Identities=13%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      +|.+..|+.-+.+.+        ..|+...+. +++.+.......-+-+ -.+....+...|....+.+|..|..+|..+
T Consensus        84 ~~~f~hlLRg~Eskd--------k~VRfrvlq-ila~l~d~~~eidd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrl  153 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKD--------KKVRFRVLQ-ILALLSDENAEIDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRL  153 (892)
T ss_pred             HHHHHHHHhcccCcc--------hhHHHHHHH-HHHHHhccccccCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            344555555555555        459999999 9998773221111112 224455666666677788999999999999


Q ss_pred             HhcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHh
Q 015728          216 ISSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQ  272 (401)
Q Consensus       216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~  272 (401)
                       ..++ .++.       ..+...++.+++  +++++++.|   |.|++.++.....|++
T Consensus       154 -Q~d~-~dee-------~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Ive  200 (892)
T KOG2025|consen  154 -QGDP-KDEE-------CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVE  200 (892)
T ss_pred             -hcCC-CCCc-------ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHH
Confidence             6543 1121       135577888884  445677764   5677766666666654

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.48  E-value=0.3  Score=37.36  Aligned_cols=27  Identities=19%  Similarity=0.576  Sum_probs=23.0

Q ss_pred             CccccccHHhHHHHHHcCCCCCCCCccc
Q 015728           29 CTGQTYDRSSIEKWLAAGNLTCPVTMQT   56 (401)
Q Consensus        29 ~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~   56 (401)
                      .|.|.|...||.+|+++ ...||.|.+.
T Consensus        80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence            49999999999999994 5579999764

>PHA03096 p28-like protein; Provisional

Probab=88.40  E-value=0.27  Score=45.82  Aligned_cols=42  Identities=19%  Similarity=0.309  Sum_probs=28.8

Q ss_pred             ccccccccccC-CceE------c-CccccccHHhHHHHHHcC--CCCCCCCc
Q 015728           13 FRCPISLDLFT-DPVT------L-CTGQTYDRSSIEKWLAAG--NLTCPVTM   54 (401)
Q Consensus        13 ~~C~iC~~~~~-~Pv~------~-~Cgh~fc~~Ci~~~~~~~--~~~CP~c~   54 (401)
                      -.|.||++... .|..      + .|.|.||..|+..|....  ..+||.|+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            46999999432 3221      3 599999999999998753  23455554

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=88.08  E-value=3.2  Score=35.18  Aligned_cols=130  Identities=15%  Similarity=0.254  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHH-HHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728          161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFI-VLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI  239 (401)
Q Consensus       161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv-~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L  239 (401)
                      ++-.++- ++..+-   +..++...  ..+...+ ..+..++.+....+..++..+ =...  ++....+...+|.++.+
T Consensus        21 ~r~~a~v-~l~k~l---~~~~~~~~--~~~~~~i~~~~~~~~~d~~i~~~~~l~~l-fp~~--~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   21 VRSHALV-ILSKLL---DAAREEFK--EKISDFIESLLDEGEMDSLIIAFSALTAL-FPGP--PDVGSELFLSEGFLESL   91 (157)
T ss_dssp             HHHHHHH-HHHHHH---HHHHHHHH--HHHHHHHHHHHCCHHCCHHHHHHHHHHHH-CTTT--HHHHHHHCCTTTHHHHH
T ss_pred             HHHHHHH-HHHHHH---HHhHHHHH--HHHHHHHHHHHccccchhHHHHHHHHHHH-hCCC--HHHHHHHHhhhhHHHHH
Confidence            7777777 555442   22222221  1233333 344555556777777777776 2222  37777777667999999


Q ss_pred             HHHcc--C-CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccch-HHHHHHHHHH
Q 015728          240 ISLVH--H-NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERS-LAAIAMARIE  302 (401)
Q Consensus       240 v~lL~--~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~-~~~~a~~~L~  302 (401)
                      +.+..  . +...+..++.+|..=|.+..-|..+.+. +++.|-+++.+  +.++. ++..|+-.|.
T Consensus        92 ~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~--~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   92 LPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKN--SKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTT--CC-HH-CHHHHHHHHH
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHcc--ccchHHHHHHHHHHHh
Confidence            99995  3 4457777777777766666666665554 78888888863  44444 6666666554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=87.53  E-value=48  Score=37.00  Aligned_cols=220  Identities=11%  Similarity=0.094  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHhhcCC--chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc-hhhhhhhhccchHH
Q 015728          159 VQFVEESLSCVQKLLLVG--ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE-TKELCCKLGKDDRL  235 (401)
Q Consensus       159 ~~~~~~a~~~~L~~l~~~--~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~-~~~~~~~i~~~~g~  235 (401)
                      +..+.+|+. +|..++..  ++...     ...+|-++.++..+...+|..|..+|..+.+...+ .+.+.....+  -+
T Consensus       437 ~~tK~~ALe-Ll~~lS~~i~de~~L-----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e--Yl  508 (1431)
T KOG1240|consen  437 IQTKLAALE-LLQELSTYIDDEVKL-----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE--YL  508 (1431)
T ss_pred             chhHHHHHH-HHHHHhhhcchHHHH-----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh--hh
Confidence            345677888 88877732  22222     24589999999999999999999999887454432 2233334433  47


Q ss_pred             HHHHHHHccC-Cch-hHHHHHHHHHHhcC------------------C-Cch-----------hHHHHhcCcHHHHHHHH
Q 015728          236 LREIISLVHH-NSE-ASDAGVRAFSALCS------------------T-ETN-----------RKTLVQEGAINGLIAYI  283 (401)
Q Consensus       236 i~~Lv~lL~~-~~~-~~~~a~~aL~~Ls~------------------~-~~n-----------~~~iv~~G~v~~Lv~lL  283 (401)
                      +|.|-+++.+ +.. ++-.=|..|..|+.                  + +++           ..++. .++=...+.||
T Consensus       509 fP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~~~v~sLl  587 (1431)
T KOG1240|consen  509 FPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVEQMVSSLL  587 (1431)
T ss_pred             hhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHHHHHHHHH
Confidence            7888888844 322 33333333322221                  1 111           11111 11222333455


Q ss_pred             HhhccccchHHHHHHHHHHHHhC----------------------CHhhHHHHHh--------------CCCcHHHHHHH
Q 015728          284 SNALTRERSLAAIAMARIEQLLA----------------------IENSKDALIN--------------NPNGVYALVKM  327 (401)
Q Consensus       284 ~~~~~~~~~~~~~a~~~L~~La~----------------------~~~~~~~~~~--------------~~g~i~~Lv~~  327 (401)
                      .   ++++-++..-+..|.-||.                      ++.-|.++..              +++.+|-|.+ 
T Consensus       588 s---d~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q-  663 (1431)
T KOG1240|consen  588 S---DSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQ-  663 (1431)
T ss_pred             c---CCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHH-
Confidence            5   4555666666666666664                      2233433331              2233455555 


Q ss_pred             HHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728          328 VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       328 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  394 (401)
                      =+.++++.+...|+.+|..|+..+ ..+ +..--..++....+|-.+ +...|..+..++....+.+
T Consensus       664 ~ltD~EE~Viv~aL~~ls~Lik~~-ll~-K~~v~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  664 GLTDGEEAVIVSALGSLSILIKLG-LLR-KPAVKDILQDVLPLLCHP-NLWIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             hccCcchhhHHHHHHHHHHHHHhc-ccc-hHHHHHHHHhhhhheeCc-hHHHHHHHHHHHHHHHhhh
Confidence            356677788999999999999864 333 222223344455555555 8899999999888777644

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.20  E-value=0.37  Score=47.15  Aligned_cols=48  Identities=15%  Similarity=0.255  Sum_probs=32.7

Q ss_pred             cccccccc-cccCCce---EcCccccccHHhHHHHHHc-----CCCCCCC--CcccCCC
Q 015728           12 LFRCPISL-DLFTDPV---TLCTGQTYDRSSIEKWLAA-----GNLTCPV--TMQTLHD   59 (401)
Q Consensus        12 ~~~C~iC~-~~~~~Pv---~~~Cgh~fc~~Ci~~~~~~-----~~~~CP~--c~~~~~~   59 (401)
                      ...|.||. +......   +..|+|.||..|+.+++..     ....||.  |...++.
T Consensus       146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~  204 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL  204 (384)
T ss_pred             cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence            56899999 4433322   2469999999999999873     3466776  4444443

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=87.12  E-value=1.3  Score=43.65  Aligned_cols=155  Identities=13%  Similarity=0.092  Sum_probs=86.7

Q ss_pred             chHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-c-chhhhhhhhccchH-HHHHHHHHc---c-CCchhHHHHHHHHHHhc
Q 015728          189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSS-H-ETKELCCKLGKDDR-LLREIISLV---H-HNSEASDAGVRAFSALC  261 (401)
Q Consensus       189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~-~-~~~~~~~~i~~~~g-~i~~Lv~lL---~-~~~~~~~~a~~aL~~Ls  261 (401)
                      +...+...|.+.....|+.+++++.+| +.. . ..+..+..-....| .|..++..-   . .++.++.+|.++|.|+.
T Consensus       434 aa~~il~sl~d~~ln~r~KaawtlgnI-TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll  512 (728)
T KOG4535|consen  434 AANAILMSLEDKSLNVRAKAAWSLGNI-TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL  512 (728)
T ss_pred             HHHHHHHHhhhHhHhHHHHHHHHhhhh-HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence            344445555555677899999999999 421 1 11111111111112 233333332   1 24569999999999998


Q ss_pred             CCCc----hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHh-CCCcHHHHHHHHHhcCChhH
Q 015728          262 STET----NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALIN-NPNGVYALVKMVFRVSDHEG  336 (401)
Q Consensus       262 ~~~~----n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~-~~g~i~~Lv~~l~~~~~~~~  336 (401)
                      ..-+    --......|.+..++.-.-.  .....++=+++-++.||-+++.-.-+-.. ..-+.+.|..++...++=++
T Consensus       513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~--~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV  590 (728)
T KOG4535|consen  513 QFLQPIEKPTFAEIIEESIQALISTVLT--EAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV  590 (728)
T ss_pred             HHHHHhhhccHHHHHHHHHHhcccceec--ccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence            5322    11111223333333332221  45667899999999999987654221111 12357778886656666677


Q ss_pred             HHHHHHHHHH
Q 015728          337 SENAINSLMM  346 (401)
Q Consensus       337 ~~~a~~~L~~  346 (401)
                      +-+|+.+|..
T Consensus       591 Ri~AA~aL~v  600 (728)
T KOG4535|consen  591 RIRAAAALSV  600 (728)
T ss_pred             eehhhhhhcC
Confidence            7788888754

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.05  E-value=45  Score=35.43  Aligned_cols=206  Identities=14%  Similarity=0.115  Sum_probs=126.8

Q ss_pred             HHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 015728          140 PLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSS  219 (401)
Q Consensus       140 ~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~  219 (401)
                      .-|..||.|..+.        ...+|..-++..++.+.+-       ....|.+|+-..+.+.+++.-.-..|... +. 
T Consensus        38 ~dL~~lLdSnkd~--------~KleAmKRIia~iA~G~dv-------S~~Fp~VVKNVaskn~EVKkLVyvYLlrY-AE-  100 (968)
T KOG1060|consen   38 DDLKQLLDSNKDS--------LKLEAMKRIIALIAKGKDV-------SLLFPAVVKNVASKNIEVKKLVYVYLLRY-AE-  100 (968)
T ss_pred             HHHHHHHhccccH--------HHHHHHHHHHHHHhcCCcH-------HHHHHHHHHHhhccCHHHHHHHHHHHHHH-hh-
Confidence            4577888877654        4555655577877765541       23578888888888999998776666666 42 


Q ss_pred             cchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHH
Q 015728          220 HETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIA  297 (401)
Q Consensus       220 ~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a  297 (401)
                           ..+.+.-.  -|..+=+-|+ .++-.+-.|+++|..+      |-.++    +|.++.-++.+ .+.++-++..|
T Consensus       101 -----eqpdLALL--SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~I----aPI~llAIk~~~~D~s~yVRk~A  163 (968)
T KOG1060|consen  101 -----EQPDLALL--SINTFQKALKDPNQLIRASALRVLSSI------RVPMI----APIMLLAIKKAVTDPSPYVRKTA  163 (968)
T ss_pred             -----cCCCceee--eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhH----HHHHHHHHHHHhcCCcHHHHHHH
Confidence                 23333221  2466666674 4555666666665443      22222    22222222211 16677888888


Q ss_pred             HHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC
Q 015728          298 MARIEQLLA-IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS  376 (401)
Q Consensus       298 ~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~  376 (401)
                      +-+|--|=. +++.+.++.       .+++.|+.+.++.+.-.|+.+.-.+|-+.-+     +=++-...|..++-.= +
T Consensus       164 A~AIpKLYsLd~e~k~qL~-------e~I~~LLaD~splVvgsAv~AF~evCPerld-----LIHknyrklC~ll~dv-d  230 (968)
T KOG1060|consen  164 AHAIPKLYSLDPEQKDQLE-------EVIKKLLADRSPLVVGSAVMAFEEVCPERLD-----LIHKNYRKLCRLLPDV-D  230 (968)
T ss_pred             HHhhHHHhcCChhhHHHHH-------HHHHHHhcCCCCcchhHHHHHHHHhchhHHH-----HhhHHHHHHHhhccch-h
Confidence            888776653 566666664       3666688888889999999999998864211     2245567777777554 5


Q ss_pred             HHHHHHHHHHHHHHHH
Q 015728          377 NRTKTKARMLLKLLRS  392 (401)
Q Consensus       377 ~~~~~~A~~~L~~l~~  392 (401)
                      +..+-..-.+|-.-+|
T Consensus       231 eWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  231 EWGQVVLINMLTRYAR  246 (968)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            6666665555544444

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=86.99  E-value=34  Score=33.93  Aligned_cols=187  Identities=16%  Similarity=0.122  Sum_probs=111.0

Q ss_pred             chHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhc-cchHHHHHHHHHc--cCCc----hhHHHHHHHHHHh
Q 015728          189 KMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLG-KDDRLLREIISLV--HHNS----EASDAGVRAFSAL  260 (401)
Q Consensus       189 ~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~-~~~g~i~~Lv~lL--~~~~----~~~~~a~~aL~~L  260 (401)
                      .+..++.+..+. +...+..++..+..| ..       |..-+ .....+..+..-+  ....    ...+...|....|
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~L-vN-------K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL  261 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASL-VN-------KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL  261 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHH-Hc-------CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence            455666655443 456677777777777 22       21000 1112333333333  1112    2444445555555


Q ss_pred             c-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-Hhh-------------HHHHHhCCCcHHHHH
Q 015728          261 C-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENS-------------KDALINNPNGVYALV  325 (401)
Q Consensus       261 s-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~-------------~~~~~~~~g~i~~Lv  325 (401)
                      . +++..-.     ..+..|+++|.   +  +++...++..+..|..+ ++-             |+.+.  ...+|.|+
T Consensus       262 v~R~~~~~~-----~~~~~L~~lL~---~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~  329 (415)
T PF12460_consen  262 VMRGHPLAT-----ELLDKLLELLS---S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLL  329 (415)
T ss_pred             HHcCCchHH-----HHHHHHHHHhC---C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHH
Confidence            4 2322222     24566888887   3  45667788888877766 321             33443  24688888


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          326 KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      +. .+..+...+.+-+.+|..|..+-+...-.---...+|.|++-|..+ +...+..+..+|..+-+..++-
T Consensus       330 ~~-~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~  399 (415)
T PF12460_consen  330 EG-FKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPEL  399 (415)
T ss_pred             HH-HhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHH
Confidence            84 5555546888899999999888664433333455778888888766 7789999999999888755543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=86.34  E-value=17  Score=39.66  Aligned_cols=151  Identities=11%  Similarity=0.069  Sum_probs=88.9

Q ss_pred             HHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHH
Q 015728          234 RLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKD  312 (401)
Q Consensus       234 g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~  312 (401)
                      ++|..|...|+ .+..++..|++-+..++....  ..+++ .+|...++++..  ..+...-..|+-+|+.||.-+--.-
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p--~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNP--AEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCc--CCchhHHHHHHHHHHHHHhcCCcch
Confidence            67788888884 567799999999999986444  33343 377788887763  2345566788889999985432222


Q ss_pred             HHHhCCCcHHHHHHHHH-------hcCChhHHHHHHHHHHHHhcCCHHH-HHHHHHcCcHHHHHHHhhcCCCHHHHHHHH
Q 015728          313 ALINNPNGVYALVKMVF-------RVSDHEGSENAINSLMMICCDSLQA-REEAICAGVLTQLLLLLQSQCSNRTKTKAR  384 (401)
Q Consensus       313 ~~~~~~g~i~~Lv~~l~-------~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~  384 (401)
                      ...  +.++|.+++.+.       ......+++.|..++|+++...... .+-++..=+-..|..-+.++ .-.-|+.|+
T Consensus       416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr-evncRRAAs  492 (1133)
T KOG1943|consen  416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR-EVNCRRAAS  492 (1133)
T ss_pred             HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-hhhHhHHHH
Confidence            111  145666666442       1123468999999999998775321 11222211112222233444 444555555


Q ss_pred             HHH-HHHHH
Q 015728          385 MLL-KLLRS  392 (401)
Q Consensus       385 ~~L-~~l~~  392 (401)
                      +++ ..+.+
T Consensus       493 AAlqE~VGR  501 (1133)
T KOG1943|consen  493 AALQENVGR  501 (1133)
T ss_pred             HHHHHHhcc
Confidence            554 44444

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=85.85  E-value=0.31  Score=38.19  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=26.8

Q ss_pred             CCCCcccccccccccCCceE--cCccccccHHhHH
Q 015728            8 TIPHLFRCPISLDLFTDPVT--LCTGQTYDRSSIE   40 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~Pv~--~~Cgh~fc~~Ci~   40 (401)
                      .+.+.-.|++|...+.+++.  .||||.|...|+.
T Consensus        74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            45677889999998876664  5999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=85.85  E-value=56  Score=35.29  Aligned_cols=230  Identities=12%  Similarity=0.134  Sum_probs=122.1

Q ss_pred             hHHHHHH-HHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728          109 LETKLQI-VQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE  187 (401)
Q Consensus       109 ~~~~~~a-~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~  187 (401)
                      .++.... ...|...++-+++.... .++-..|.++.+...-+..      |.+...+-. ++..++. ..++..-+ ..
T Consensus       543 s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~D------P~V~~~~qd-~f~el~q-~~~~~g~m-~e  612 (1005)
T KOG2274|consen  543 SDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSED------PQVASLAQD-LFEELLQ-IAANYGPM-QE  612 (1005)
T ss_pred             cHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCC------chHHHHHHH-HHHHHHH-HHHhhcch-HH
Confidence            3344444 45566777777754433 3666778877776443332      546555555 4444442 22222233 23


Q ss_pred             CchHHHHHHhhcCC----HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhc
Q 015728          188 SKMESFIVLFEHGS----CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALC  261 (401)
Q Consensus       188 g~i~~Lv~~L~~~~----~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls  261 (401)
                      -.||.++..|....    ......++.+|.-++... ++|-....+.   -+.|++.+..  +++.+...++..+|+.+-
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t-p~pL~~~l~~---~~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT-PSPLPNLLIC---YAFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC-CCCccHHHHH---HHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence            46999999998765    566667777777553333 2333344442   3679999877  567789999999999876


Q ss_pred             CC-CchhHHHHhcCcHH--HHHHHHHhhccccchHHHHHHHHHHHHhCC--HhhHHHHHhCC-CcHHHHHHHHHhcCChh
Q 015728          262 ST-ETNRKTLVQEGAIN--GLIAYISNALTRERSLAAIAMARIEQLLAI--ENSKDALINNP-NGVYALVKMVFRVSDHE  335 (401)
Q Consensus       262 ~~-~~n~~~iv~~G~v~--~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~--~~~~~~~~~~~-g~i~~Lv~~l~~~~~~~  335 (401)
                      .. .+-...--..++..  .+++.+..  --+++.-+.+++-...|...  ...-.++..+- -...+.+..|.+..+.+
T Consensus       689 s~~~eq~~t~~~e~g~~~~yImqV~sq--LLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~ls  766 (1005)
T KOG2274|consen  689 SVTLEQLLTWHDEPGHNLWYIMQVLSQ--LLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLS  766 (1005)
T ss_pred             hcCHHHHHhhccCCCccHHHHHHHHHH--HcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHH
Confidence            43 22222222222222  44444432  11222333333333333211  01111111000 12334444456666677


Q ss_pred             HHHHHHHHHHHHhcCCHHH
Q 015728          336 GSENAINSLMMICCDSLQA  354 (401)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~  354 (401)
                      +.++-+.+++.|...+.+.
T Consensus       767 viQsLi~VfahL~~t~~~~  785 (1005)
T KOG2274|consen  767 VIQSLIMVFAHLVHTDLDQ  785 (1005)
T ss_pred             HHHHHHHHHHHHhhCCHHH
Confidence            8888888888888765443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.82  E-value=31  Score=37.39  Aligned_cols=156  Identities=17%  Similarity=0.176  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHcc---C------CchhHHHHHHHHHHhcC---CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHH
Q 015728          233 DRLLREIISLVH---H------NSEASDAGVRAFSALCS---TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR  300 (401)
Q Consensus       233 ~g~i~~Lv~lL~---~------~~~~~~~a~~aL~~Ls~---~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~  300 (401)
                      .|+++.++.+|.   +      ++..+.-|++++.+|+.   -++.-+..++.=.++.+...++   ++..-++..|+++
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~---s~~g~Lrarac~v  485 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ---SPYGYLRARACWV  485 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc---CchhHHHHHHHHH
Confidence            588999999983   1      23466777777777773   2223334455546666666777   6777899999999


Q ss_pred             HHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHH--HcCcHHHHHHHhhcCCCH
Q 015728          301 IEQLLA-IENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAI--CAGVLTQLLLLLQSQCSN  377 (401)
Q Consensus       301 L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~v~~L~~ll~~~~~~  377 (401)
                      +...+. +-.+...+.   .+.....+.|..+.+-.++-.|+-+|..+-.+.+...+.+.  --+.++.|+.+++.-   
T Consensus       486 l~~~~~~df~d~~~l~---~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~---  559 (1010)
T KOG1991|consen  486 LSQFSSIDFKDPNNLS---EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV---  559 (1010)
T ss_pred             HHHHHhccCCChHHHH---HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc---
Confidence            999993 222222221   12334455344366666788888999888777543322121  234445555555332   


Q ss_pred             HHHHHHHHHHHHHHHhhHHhh
Q 015728          378 RTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       378 ~~~~~A~~~L~~l~~~~~e~~  398 (401)
                       --+--...+.-+-..++||+
T Consensus       560 -End~Lt~vme~iV~~fseEl  579 (1010)
T KOG1991|consen  560 -ENDDLTNVMEKIVCKFSEEL  579 (1010)
T ss_pred             -chhHHHHHHHHHHHHHHHhh
Confidence             22223333443333455554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.75  E-value=58  Score=35.44  Aligned_cols=230  Identities=9%  Similarity=0.073  Sum_probs=112.1

Q ss_pred             hcChHHHHHHHHHHHHHHh---cCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhh
Q 015728          106 EATLETKLQIVQKIHVVLR---ESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLN  182 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~---~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~  182 (401)
                      +.+...+-.|+..+..+++   +.+..+..+.. =.++...-.++|+..-        .+-.|+| +++.++.-+-....
T Consensus       429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~-flv~hVfP~f~s~~g~--------Lrarac~-vl~~~~~~df~d~~  498 (1010)
T KOG1991|consen  429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEY-FLVNHVFPEFQSPYGY--------LRARACW-VLSQFSSIDFKDPN  498 (1010)
T ss_pred             ccChhhhhhHHHHHHHHHHHHccCCchHHHHHH-HHHHHhhHhhcCchhH--------HHHHHHH-HHHHHHhccCCChH
Confidence            3455556666666666653   33334444422 1233334445565543        8899999 99988732211112


Q ss_pred             hcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHccC-CchhHHHHHHHHHH
Q 015728          183 LLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVHH-NSEASDAGVRAFSA  259 (401)
Q Consensus       183 ~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~~-~~~~~~~a~~aL~~  259 (401)
                      .+  ..++......|. +....++..||.+|..+++...   .+...+... .+.++.|.++.+. ..+....   ++-.
T Consensus       499 ~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~---~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~---vme~  570 (1010)
T KOG1991|consen  499 NL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQE---QADEKVSAHVPPIMQELLKLSNEVENDDLTN---VMEK  570 (1010)
T ss_pred             HH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch---hhhhhHhhhhhHHHHHHHHHHHhcchhHHHH---HHHH
Confidence            22  235677777777 6677899999999999866554   333434321 2445555555532 2221111   1111


Q ss_pred             h-cCCCchh-HHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC------CHhhHHHHH-hCCCcHHHHHHHH
Q 015728          260 L-CSTETNR-KTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLA------IENSKDALI-NNPNGVYALVKMV  328 (401)
Q Consensus       260 L-s~~~~n~-~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~------~~~~~~~~~-~~~g~i~~Lv~~l  328 (401)
                      + +...+.- .-.++  ...+...++++.+..+.++.....+++++..|-.      .-+++..+. .-+..+-..+..+
T Consensus       571 iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~i  650 (1010)
T KOG1991|consen  571 IVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFI  650 (1010)
T ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            1 1112211 11111  2245556666653111222233333333333222      222332221 1123455555556


Q ss_pred             HhcCChhHHHHHHHHHHHHhcCCHH
Q 015728          329 FRVSDHEGSENAINSLMMICCDSLQ  353 (401)
Q Consensus       329 ~~~~~~~~~~~a~~~L~~l~~~~~~  353 (401)
                      ++..-...-+.+..++.++....++
T Consensus       651 L~~~i~dfyeE~~ei~~~~t~~~~~  675 (1010)
T KOG1991|consen  651 LKNDITDFYEELLEIVSSLTFLSKE  675 (1010)
T ss_pred             HHHhhHHHHHHHHHHHhhhhhhhcc
Confidence            6654446666677777777665543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=85.58  E-value=0.25  Score=53.94  Aligned_cols=46  Identities=24%  Similarity=0.392  Sum_probs=38.7

Q ss_pred             CCcccccccccccC-CceEcCccccccHHhHHHHHHcCCCCCCCCccc
Q 015728           10 PHLFRCPISLDLFT-DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQT   56 (401)
Q Consensus        10 ~~~~~C~iC~~~~~-~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~   56 (401)
                      -..+.|+||.++++ .-....|||.||..|...|.. .+..||.|...
T Consensus      1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSI 1197 (1394)
T ss_pred             hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhh
Confidence            35679999999999 566788999999999999988 56679999743

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.44  E-value=39  Score=37.44  Aligned_cols=183  Identities=16%  Similarity=0.154  Sum_probs=97.4

Q ss_pred             cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHccC-CchhHHHHHHHHHHhcCCCc-hhHHHHhcCc
Q 015728          199 HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVHH-NSEASDAGVRAFSALCSTET-NRKTLVQEGA  275 (401)
Q Consensus       199 ~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~~~~-n~~~iv~~G~  275 (401)
                      +.+..+|..+-.+|..+ +...   ......... ..+-..|.+-++. +..++...+.+|..|-...+ .-..++.. .
T Consensus       665 ~~~~~vQkK~yrlL~~l-~~~~---s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k-~  739 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEEL-SSSP---SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK-L  739 (1176)
T ss_pred             cccHHHHHHHHHHHHHH-hcCC---chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH-H
Confidence            44778899999999998 5442   111111110 1222334444432 33467777777776653222 22223333 3


Q ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC------cHHHHHHHHHhc--CChhHHHHHHHHHHHH
Q 015728          276 INGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN------GVYALVKMVFRV--SDHEGSENAINSLMMI  347 (401)
Q Consensus       276 v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g------~i~~Lv~~l~~~--~~~~~~~~a~~~L~~l  347 (401)
                      ||-++=.+.   .-+...++.|...|..++.     .....+.|      .|..++..|...  ++  .+...+.-|..+
T Consensus       740 I~EvIL~~K---e~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd--~~~~~as~Ivai  809 (1176)
T KOG1248|consen  740 IPEVILSLK---EVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGD--STRVVASDIVAI  809 (1176)
T ss_pred             HHHHHHhcc---cccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhccc--HHHHHHHHHHHH
Confidence            333333335   5677889999999998874     11111222      566666643222  22  222222213333


Q ss_pred             hcCCHHHHHHHHHcCcHHHHHH----HhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          348 CCDSLQAREEAICAGVLTQLLL----LLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       348 ~~~~~~~~~~~~~~g~v~~L~~----ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      ..--.+. ....+.+.+..+++    .+.++ +++.++.|...++.+...+||+.
T Consensus       810 ~~il~e~-~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~  862 (1176)
T KOG1248|consen  810 THILQEF-KNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEEC  862 (1176)
T ss_pred             HHHHHHH-hccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHH
Confidence            2211121 23444444444444    45555 99999999999999998888874

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=85.38  E-value=2.1  Score=43.17  Aligned_cols=68  Identities=10%  Similarity=0.211  Sum_probs=41.6

Q ss_pred             cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 015728          273 EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS  351 (401)
Q Consensus       273 ~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~  351 (401)
                      .|+|..|++.-.+  +++++++..|+-+|...|-         .+...++..|++|..+.+..++-..+-+|.-.|.+.
T Consensus       550 ~~vv~~lLh~avs--D~nDDVrRAAViAlGfvc~---------~D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~  617 (926)
T COG5116         550 LGVVSTLLHYAVS--DGNDDVRRAAVIALGFVCC---------DDRDLLVGTVELLSESHNFHVRAGVAVALGIACAGT  617 (926)
T ss_pred             chhHhhhheeecc--cCchHHHHHHHHheeeeEe---------cCcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence            4566666666332  6777888888888877764         355566667775544445555555555555555544

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=85.15  E-value=0.67  Score=43.37  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=38.4

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHc-CCCCCCCCcccC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA-GNLTCPVTMQTL   57 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~   57 (401)
                      +++..|-||-+-.+.--.+||+|..|.-|-.+...- ..+.||.|+..-
T Consensus        59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            456789999998888778999999999998765432 467899998653

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.57  E-value=6.8  Score=36.18  Aligned_cols=136  Identities=15%  Similarity=0.137  Sum_probs=84.8

Q ss_pred             chhHHHHHHHHHHhcCCCchhHHHHhcC--cHHHHHHHHHhhccc---cchHHHHHHHHHHHHhCCHhhHHHHHhCC---
Q 015728          247 SEASDAGVRAFSALCSTETNRKTLVQEG--AINGLIAYISNALTR---ERSLAAIAMARIEQLLAIENSKDALINNP---  318 (401)
Q Consensus       247 ~~~~~~a~~aL~~Ls~~~~n~~~iv~~G--~v~~Lv~lL~~~~~~---~~~~~~~a~~~L~~La~~~~~~~~~~~~~---  318 (401)
                      ...+--+++++.|+..++..+..+.+..  .|...+..+..  +.   +..++..++.++.|++..-.....  ..+   
T Consensus       124 ~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~--~~~~~~  199 (268)
T PF08324_consen  124 PANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLS--SLLDSNKNVRIALATLLLNLSVLLHKNRS--DEEWQS  199 (268)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCT--TS-HHHHHHHHHHHHHHHHHHHHHHHCTS---CCHHH
T ss_pred             HHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhh--ccccccHHHHHHHHHHHHHHHHHHHhcCC--ChHHHH
Confidence            4488889999999999999999888643  33333333331  22   567777788888888852111100  011   


Q ss_pred             CcHHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHH
Q 015728          319 NGVYALVKMVFR-VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARML  386 (401)
Q Consensus       319 g~i~~Lv~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~  386 (401)
                      ..+..+++.+.. ..++++.-.++.+|.+|...++.........|+-..+-.....+..++.++.+..+
T Consensus       200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  200 ELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            123344442222 25778888899999999987766654444456666665555555577888777643

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=84.31  E-value=0.99  Score=40.75  Aligned_cols=45  Identities=36%  Similarity=0.459  Sum_probs=37.1

Q ss_pred             cccccccccccCCceEc-CccccccHHhHHHHHHc-CCCCCCCCccc
Q 015728           12 LFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPVTMQT   56 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~   56 (401)
                      .++||+....+..|+.- .|||.|.+.-+..+... ....||+-+.+
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            57999999999999974 79999999999998774 24569985554

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=83.92  E-value=55  Score=34.45  Aligned_cols=189  Identities=14%  Similarity=0.128  Sum_probs=105.7

Q ss_pred             CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH-HccCCchhHHHHHHHHHHhcCCCc
Q 015728          187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS-LVHHNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                      .|.+..+++-..+.+..+|-+...+|..+ .....  +.-..+.  .+++..|.. +.+..+.++..|+.+|..+=.++.
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l-~d~~~--eidd~vf--n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~  158 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALL-SDENA--EIDDDVF--NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK  158 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHH-hcccc--ccCHHHH--HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC
Confidence            46677777777888889999999998888 53110  1111111  244444443 334556699999999999875433


Q ss_pred             hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC----CcHHHHHHHH-HhcCCh--hHHH
Q 015728          266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP----NGVYALVKMV-FRVSDH--EGSE  338 (401)
Q Consensus       266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~----g~i~~Lv~~l-~~~~~~--~~~~  338 (401)
                      +-    +..++..++.++++  +++.+++..|+   .+++-++..+-.+++.+    |++..++..- +..-+.  ...+
T Consensus       159 de----e~~v~n~l~~liqn--DpS~EVRRaaL---snI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~  229 (892)
T KOG2025|consen  159 DE----ECPVVNLLKDLIQN--DPSDEVRRAAL---SNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSID  229 (892)
T ss_pred             CC----cccHHHHHHHHHhc--CCcHHHHHHHH---HhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Confidence            21    23467889999997  78888877655   56666665555444333    3444443311 000000  0111


Q ss_pred             HHHHHH-HHHhcCCHHHHHHHH----H------cCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728          339 NAINSL-MMICCDSLQAREEAI----C------AGVLTQLLLLLQSQCSNRTKTKARMLLKL  389 (401)
Q Consensus       339 ~a~~~L-~~l~~~~~~~~~~~~----~------~g~v~~L~~ll~~~~~~~~~~~A~~~L~~  389 (401)
                      .-+..| |.|-..+..++..+.    .      .|-+.-|++-+....+..++.+|..+|-.
T Consensus       230 krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~  291 (892)
T KOG2025|consen  230 KRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS  291 (892)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence            112222 333221112222221    2      56666677777666566777777776665

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=83.60  E-value=27  Score=31.33  Aligned_cols=174  Identities=13%  Similarity=0.113  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc---cCC--ch-hHHHHHHHHHHhcCCCc--hhHHHHhcCcH
Q 015728          205 KKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV---HHN--SE-ASDAGVRAFSALCSTET--NRKTLVQEGAI  276 (401)
Q Consensus       205 ~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL---~~~--~~-~~~~a~~aL~~Ls~~~~--n~~~iv~~G~v  276 (401)
                      ..+|...|..+ ++..   +.|..+.++ .+=-.|-..|   +.+  .+ .+..++.++..|-.+++  ..+.+..-.+|
T Consensus       117 vcnaL~lLQcl-aShP---etk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv  191 (315)
T COG5209         117 VCNALNLLQCL-ASHP---ETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV  191 (315)
T ss_pred             HHHHHHHHHHH-hcCc---chheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence            34666666666 6555   778877765 3212233333   222  23 89999999999997666  46667788899


Q ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCC-------CcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728          277 NGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNP-------NGVYALVKMVFRVSDHEGSENAINSLMMICC  349 (401)
Q Consensus       277 ~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~-------g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~  349 (401)
                      |.+++++.   .+++-.+..|+..+..+-.++.|-.-+....       .....++.-+...+..+.-+.++++-..||.
T Consensus       192 PLcLrIme---~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         192 PLCLRIME---LGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHHHHHH---hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            99999999   5666566666666665555555443332111       1223333333444566788889999988886


Q ss_pred             CCHHHHHHHHH----cCcHHHHHH-HhhcCCCHHHHHHHHHHHHHH
Q 015728          350 DSLQAREEAIC----AGVLTQLLL-LLQSQCSNRTKTKARMLLKLL  390 (401)
Q Consensus       350 ~~~~~~~~~~~----~g~v~~L~~-ll~~~~~~~~~~~A~~~L~~l  390 (401)
                      + ++.| +++.    .|....-.. ++.+  +..+|+.-+.++-.+
T Consensus       269 ~-p~aR-~lL~~~lP~~Lrd~tfs~vl~d--D~~sk~ClAqll~~l  310 (315)
T COG5209         269 K-PHAR-ALLSSKLPDGLRDDTFSLVLAD--DGGSKECLAQLLTFL  310 (315)
T ss_pred             C-HhHH-HHHhccCCccccccHHHHHHHh--cCChHHHHHHHHHHH
Confidence            5 6676 4444    333333222 3333  334555555554443

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=83.59  E-value=1.2  Score=32.26  Aligned_cols=48  Identities=19%  Similarity=0.106  Sum_probs=21.8

Q ss_pred             cccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           12 LFRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        12 ~~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .-.|.||.+-.-     ++...  .|+--.|+.|++--.+.+...||.|+..+..
T Consensus         9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr   63 (80)
T PF14569_consen    9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR   63 (80)
T ss_dssp             S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred             CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence            457999998542     34443  4888889999987777788999999876653

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=83.53  E-value=0.51  Score=43.49  Aligned_cols=43  Identities=28%  Similarity=0.584  Sum_probs=33.1

Q ss_pred             cccccccccccC----CceEcCccccccHHhHHHHHHcCCCCCCCCcc
Q 015728           12 LFRCPISLDLFT----DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQ   55 (401)
Q Consensus        12 ~~~C~iC~~~~~----~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~   55 (401)
                      .+-||||.+.+.    .|..++|||+.-..|+......+ .+||.|.+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence            345999999664    35557999988778887776656 99999966

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=82.45  E-value=90  Score=35.00  Aligned_cols=189  Identities=14%  Similarity=0.147  Sum_probs=114.5

Q ss_pred             hHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-CchhHHHHHHHHHHhcC-----
Q 015728          190 MESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSEASDAGVRAFSALCS-----  262 (401)
Q Consensus       190 i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~-----  262 (401)
                      ++.+...+++ ...+.|.+|...|..+ |..-. ++++-     .-++|-+|.++.+ ...++-.|+.+|..+-.     
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~l-S~~i~-de~~L-----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~  496 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQEL-STYID-DEVKL-----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDI  496 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHH-hhhcc-hHHHH-----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCC
Confidence            4444455544 2567889999999999 66431 13222     3578999999954 55688888888887542     


Q ss_pred             CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhh------------------------------HH
Q 015728          263 TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENS------------------------------KD  312 (401)
Q Consensus       263 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~------------------------------~~  312 (401)
                      .+.+...+.|- .+|.|-+++.+  +....++..-+..|..||...-.                              ..
T Consensus       497 ~~~daniF~eY-lfP~L~~l~~d--~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~  573 (1431)
T KOG1240|consen  497 PPSDANIFPEY-LFPHLNHLLND--SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQ  573 (1431)
T ss_pred             CcccchhhHhh-hhhhhHhhhcc--CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHH
Confidence            33345555554 78888888873  24445555555556666642111                              11


Q ss_pred             HHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC---------------------CHHHHHHHH------------
Q 015728          313 ALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD---------------------SLQAREEAI------------  359 (401)
Q Consensus       313 ~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~---------------------~~~~~~~~~------------  359 (401)
                      ++.   ..|..+|..++.++++.++..-+..|.-||.-                     +...|-.+.            
T Consensus       574 ~L~---~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~  650 (1431)
T KOG1240|consen  574 ALH---HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW  650 (1431)
T ss_pred             HHH---HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee
Confidence            111   13555555566666667777666666665521                     112343333            


Q ss_pred             ---HcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          360 ---CAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       360 ---~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                         +++.+|.|.+=+.++ .+.+-.+|...|..|.+
T Consensus       651 rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik  685 (1431)
T KOG1240|consen  651 RSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIK  685 (1431)
T ss_pred             eeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHH
Confidence               355566666666666 88899999988888876

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=82.12  E-value=11  Score=31.42  Aligned_cols=74  Identities=14%  Similarity=0.098  Sum_probs=58.1

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728          320 GVYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  394 (401)
                      ++..|.+. ++++++.++-.|+.+|-.+..+. .....++...+.+..|+.++.....+.+|+++..++...+..+
T Consensus        42 a~ral~kr-l~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKR-LLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHH-HcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            45566665 45678889999999999998884 4678888899999999999976557789988887777655533

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.68  E-value=16  Score=40.36  Aligned_cols=140  Identities=14%  Similarity=0.120  Sum_probs=100.0

Q ss_pred             HHHHHHHHcc-----CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh
Q 015728          235 LLREIISLVH-----HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN  309 (401)
Q Consensus       235 ~i~~Lv~lL~-----~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~  309 (401)
                      ..|.++.+.+     ++++.+.+|.-||..+..-...   +- ..-.|.|+..|..  ++++.++-+++.++..|+..-.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---fc-es~l~llftimek--sp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---FC-ESHLPLLFTIMEK--SPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---HH-HHHHHHHHHHHhc--CCCceeeecchheccchhhhcc
Confidence            4456666652     3567999999999987753321   11 2367888999986  6788899999999998885322


Q ss_pred             hHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728          310 SKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL  389 (401)
Q Consensus       310 ~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~  389 (401)
                      +-..-     .-+.|.. .+++.++.+++.|+.+|..|--++     .+.-.|-+..+...+.++ +++.+..|....+.
T Consensus       994 nlie~-----~T~~Ly~-rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~-~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYR-RLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDP-NAEISDLAKSFFKE 1061 (1251)
T ss_pred             cccch-----hhHHHHH-HhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            22111     1234555 467778899999999999987653     344578888888888777 99999999977777


Q ss_pred             HHH
Q 015728          390 LRS  392 (401)
Q Consensus       390 l~~  392 (401)
                      |+.
T Consensus      1062 ls~ 1064 (1251)
T KOG0414|consen 1062 LSS 1064 (1251)
T ss_pred             hhh
Confidence            765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=81.46  E-value=59  Score=32.22  Aligned_cols=129  Identities=17%  Similarity=0.257  Sum_probs=81.4

Q ss_pred             HHHHHHHHHccCCchhHHHHHHHHHHhcCC-Cc--------h-----hHHHHhcCcHHHHHHHHHhhccccchHHHHHHH
Q 015728          234 RLLREIISLVHHNSEASDAGVRAFSALCST-ET--------N-----RKTLVQEGAINGLIAYISNALTRERSLAAIAMA  299 (401)
Q Consensus       234 g~i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~-~~--------n-----~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~  299 (401)
                      ..+..|+.+|++ .+....|+.++.-|..+ ++        +     |.++.. -.+|.|++-..   ..+...+.+-+.
T Consensus       271 ~~~~~L~~lL~~-~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~---~~~~~~k~~yL~  345 (415)
T PF12460_consen  271 ELLDKLLELLSS-PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFK---EADDEIKSNYLT  345 (415)
T ss_pred             HHHHHHHHHhCC-hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHh---hcChhhHHHHHH
Confidence            355677777754 45678888888888766 32        2     333332 36777777777   445557888888


Q ss_pred             HHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHH
Q 015728          300 RIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLL  369 (401)
Q Consensus       300 ~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~  369 (401)
                      +|.++..+--.....-.-+..+|-|++. +...+...+..++.+|..+....++.... --...|+.|+.
T Consensus       346 ALs~ll~~vP~~vl~~~l~~LlPLLlqs-L~~~~~~v~~s~L~tL~~~l~~~~~~i~~-hl~sLI~~LL~  413 (415)
T PF12460_consen  346 ALSHLLKNVPKSVLLPELPTLLPLLLQS-LSLPDADVLLSSLETLKMILEEAPELISE-HLSSLIPRLLK  413 (415)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHh
Confidence            9988887533222222223467777774 56677778999999999998876544433 12244555543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=81.17  E-value=22  Score=32.69  Aligned_cols=128  Identities=13%  Similarity=0.149  Sum_probs=75.9

Q ss_pred             CCCCCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHH
Q 015728           86 PNYLATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEES  165 (401)
Q Consensus        86 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a  165 (401)
                      |.||.+...+..+...|-..+-..-.+..|...||+.--+.           .|-.|+.-+..++        .-.+-++
T Consensus       147 Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----------aI~al~~~l~~~S--------alfrhEv  207 (289)
T KOG0567|consen  147 PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----------AINALIDGLADDS--------ALFRHEV  207 (289)
T ss_pred             CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----------HHHHHHHhcccch--------HHHHHHH
Confidence            44554444555555555444445556667777776653221           2334444444443        3477777


Q ss_pred             HHHHHHhhcCCchhhhhhcccCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc
Q 015728          166 LSCVQKLLLVGETESLNLLNEESKMESFIVLFEH--GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV  243 (401)
Q Consensus       166 ~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~--~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL  243 (401)
                      +. +++.|-           ..-+|+.|.+.|..  .++-+|..|+.+|..+ +..              ..++.|...+
T Consensus       208 Af-VfGQl~-----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI-a~e--------------~~~~vL~e~~  260 (289)
T KOG0567|consen  208 AF-VFGQLQ-----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAI-ADE--------------DCVEVLKEYL  260 (289)
T ss_pred             HH-HHhhcc-----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhh-cCH--------------HHHHHHHHHc
Confidence            77 776543           33468888888854  4678999999999999 532              4567777777


Q ss_pred             cCCch-hHHHHHHHHHH
Q 015728          244 HHNSE-ASDAGVRAFSA  259 (401)
Q Consensus       244 ~~~~~-~~~~a~~aL~~  259 (401)
                      .+..+ +++.+..+|-.
T Consensus       261 ~D~~~vv~esc~valdm  277 (289)
T KOG0567|consen  261 GDEERVVRESCEVALDM  277 (289)
T ss_pred             CCcHHHHHHHHHHHHHH
Confidence            54444 55555555443

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=81.10  E-value=13  Score=39.94  Aligned_cols=146  Identities=14%  Similarity=0.142  Sum_probs=90.0

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc--cCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN--EESKMESFIVLFEHGSCSIKKRLCHLVE  213 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~--~~g~i~~Lv~~L~~~~~~~~~~aa~~L~  213 (401)
                      ...+|.|++........     .....-.++.-++.+    -+  ++++.  -+..+|.|++.|+-++..+|..+..++.
T Consensus       866 ~~ivP~l~~~~~t~~~~-----~K~~yl~~LshVl~~----vP--~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~  934 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGS-----QKHNYLEALSHVLTN----VP--KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP  934 (1030)
T ss_pred             HhhHHHHHHHhccCCcc-----chhHHHHHHHHHHhc----CC--HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence            46789999988743322     011223333322222    21  23331  1346788888898889999888887777


Q ss_pred             HHHhcccchhhhhhhhccchHHHHHHHHHccC-C---chhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhcc
Q 015728          214 VIISSSHETKELCCKLGKDDRLLREIISLVHH-N---SEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALT  288 (401)
Q Consensus       214 ~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~---~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~  288 (401)
                      -+.-...   ..-..-+  ..++|.+..+=++ +   ..++..|+.+|..|.. .|.+.-.--+-.++..|++.|.   +
T Consensus       935 ~~l~~~~---tL~t~~~--~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld---D 1006 (1030)
T KOG1967|consen  935 MLLTESE---TLQTEHL--STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD---D 1006 (1030)
T ss_pred             HHHHhcc---ccchHHH--hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC---c
Confidence            6622221   1111111  1355665555532 2   2499999999999997 6766555566678899999999   6


Q ss_pred             ccchHHHHHHHH
Q 015728          289 RERSLAAIAMAR  300 (401)
Q Consensus       289 ~~~~~~~~a~~~  300 (401)
                      +.+-+++.|+.+
T Consensus      1007 kKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 1007 KKRLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHHHHHHHH
Confidence            777788887764

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=81.00  E-value=58  Score=31.89  Aligned_cols=223  Identities=15%  Similarity=0.168  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc---hhhhhhcccCCch
Q 015728          114 QIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE---TESLNLLNEESKM  190 (401)
Q Consensus       114 ~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~---~~~~~~v~~~g~i  190 (401)
                      .|++.|..+....+..-..+.+.||+..++..|......        +.+.  .   .+-..+.   .+.+......-.|
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~--------~~~~--~---~~~~~~~~~~~~~~~~~~~~~~i   69 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDF--------ALEE--N---KNEEAGSGIPPEYKESSVDGYSI   69 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHH--------HHhc--c---cccCCCCCCCCCccccccccccc
Confidence            477888888888877788888999999999998643211        1110  0   0100000   0001001010001


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhcccc-hhhhhhhhccchHHHHHHHHHccC----CchhHHHHHHHHHHhcC-CC
Q 015728          191 ESFIVLFEHGSCSIKKRLCHLVEVIISSSHE-TKELCCKLGKDDRLLREIISLVHH----NSEASDAGVRAFSALCS-TE  264 (401)
Q Consensus       191 ~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~-~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~a~~aL~~Ls~-~~  264 (401)
                      +.-       ..........++..++..... .+..+..+ +...++..|..+++.    ++.+.-.|+.++..+-. .|
T Consensus        70 ~~~-------r~~llK~lLk~l~~~~~~~~~~~~~lrnl~-D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~neP  141 (379)
T PF06025_consen   70 SYQ-------RQQLLKSLLKFLSHAMQHSGGFGDRLRNLI-DSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEP  141 (379)
T ss_pred             CHH-------HHHHHHHHHHHHHHHhccCCCccccccccc-chhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCC
Confidence            000       000111112233333120111 11333333 322445666666632    35688889999998874 55


Q ss_pred             chhHHHHhcCcHHHHHHHHH-hhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC-------hhH
Q 015728          265 TNRKTLVQEGAINGLIAYIS-NALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD-------HEG  336 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~-~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~-------~~~  336 (401)
                      ..-..+.++|.++.+++-+. ....++.++....-.+|..||-+..|..++. +.+.++.+++ ++.+.+       .+.
T Consensus       142 T~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~-~~~~l~~~f~-if~s~~~~~~l~~~d~  219 (379)
T PF06025_consen  142 TSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVK-SSNPLDKLFE-IFTSPDYVKALRRRDT  219 (379)
T ss_pred             chhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHH-hcChHHHHHH-HhCCHHHHHHhcccch
Confidence            56777789999999999987 3223456777777788999999999999996 7899999999 443321       012


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH
Q 015728          337 SENAINSLMMICCDSLQAREEAI  359 (401)
Q Consensus       337 ~~~a~~~L~~l~~~~~~~~~~~~  359 (401)
                      ...--..+-.|.+|.+..|..++
T Consensus       220 a~~lG~~~DEL~RH~p~Lk~~i~  242 (379)
T PF06025_consen  220 ASNLGNSFDELMRHHPSLKPDII  242 (379)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHH
Confidence            22233345567777777664444

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=80.63  E-value=24  Score=37.96  Aligned_cols=148  Identities=14%  Similarity=0.126  Sum_probs=92.3

Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccc-hHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-CC
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKD-DRLLREIISLVH-HNSEASDAGVRAFSALCS-TE  264 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~-~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-~~  264 (401)
                      ..+|.+++...+.+...|.+-..+|.++....+     ++.+... ...+|-|+.-|+ .|..++..+..+|..+-. .+
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-----~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-----KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-----HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            467888887776666677766677777644333     3444432 234455555554 466677888888776553 33


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhccc-cchHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHH
Q 015728          265 TNRKTLVQEGAINGLIAYISNALTR-ERSLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMVFRVSDHEGSENAIN  342 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~~~-~~~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~  342 (401)
                      .-...=++ -.||.++.+=++. +. ...+++.|+..|..|.+ .|..+..-. ...++..|++ .+.+....+++.|++
T Consensus       942 tL~t~~~~-Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k-~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen  942 TLQTEHLS-TLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIK-ILDDKKRLVRKEAVD 1017 (1030)
T ss_pred             ccchHHHh-HHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhh-ccCcHHHHHHHHHHH
Confidence            22222121 2677777666531 11 25789999999999998 666666554 5677888888 676666567777776


Q ss_pred             HH
Q 015728          343 SL  344 (401)
Q Consensus       343 ~L  344 (401)
                      +=
T Consensus      1018 tR 1019 (1030)
T KOG1967|consen 1018 TR 1019 (1030)
T ss_pred             Hh
Confidence            53

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=80.24  E-value=2.2  Score=35.68  Aligned_cols=47  Identities=19%  Similarity=0.311  Sum_probs=33.8

Q ss_pred             CcccccccccccCCceEcCccc--c---ccHHhHHHHHHc-CCCCCCCCcccCC
Q 015728           11 HLFRCPISLDLFTDPVTLCTGQ--T---YDRSSIEKWLAA-GNLTCPVTMQTLH   58 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~~Cgh--~---fc~~Ci~~~~~~-~~~~CP~c~~~~~   58 (401)
                      .+..|-||.+--. +...||..  +   ....|+++|... +...|+.|+.++.
T Consensus         7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            3567999998754 33445543  2   268999999986 4678999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	401
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		3e-17
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		2e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		5e-04
2oxq_C	80	Structure Of The Ubch5 :chip U-Box Complex Length =		9e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 49/72 (68%)
Query: 9  IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
           P  FRCPISL+L  DPV + TGQTY+RSSI+KWL AG+ TCP + +TL    + PN+ L
Sbjct: 5  FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64
Query: 69 RHLINQWLQMGG 80
          + LI  W +  G
Sbjct: 65 KSLIALWCESNG 76

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 5   RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
           ++  IP      IS +L  +P    +G TYDR  IE+ L       PVT   L    ++P
Sbjct: 99  KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158
Query: 65  NHTLRHLINQWLQMGG 80
           N  ++ +I+ ++Q  G
Sbjct: 159 NLAMKEVIDAFIQENG 174

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 5   RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
           ++  IP      IS +L  +P    +G TYDR  IE+ L       PVT   L    ++P
Sbjct: 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260
Query: 65  NHTLRHLINQWLQMGG 80
           N  ++ +I+ ++   G
Sbjct: 261 NLAMKEVIDAFISENG 276

>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 5  RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
          ++  IP      IS +L  +P    +G TYDR  IE+ L       PVT   L    ++P
Sbjct: 6  KKREIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 65
Query: 65 NHTLRHLINQWLQ 77
          N  ++ +I+ ++Q
Sbjct: 66 NLAMKEVIDAFIQ 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	6e-36
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	7e-33
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	6e-29
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	1e-28
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	5e-26
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	3e-18
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	5e-17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-15
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-11
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	6e-11
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	5e-10
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	1e-09
1z6u_A	150	NP95-like ring finger protein isoform B; structura	5e-09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	3e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	4e-07
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	5e-07
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	5e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-06
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	1e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-06
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	5e-06
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	5e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	6e-05
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-04
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	4e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-04
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	5e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	6e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	6e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	7e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  125 bits (316), Expect = 6e-36
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query: 9  IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
           P  FRCPISL+L  DPV + TGQTY+RSSI+KWL AG+ TCP + +TL    + PN+ L
Sbjct: 5  FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 69 RHLINQWLQ 77
          + LI  W +
Sbjct: 65 KSLIALWCE 73

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  120 bits (303), Expect = 7e-33
 Identities = 22/76 (28%), Positives = 38/76 (50%)

Query: 2   KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
           ++ ++  IP      IS +L  +P    +G TYDR  IE+ L       PVT   L    
Sbjct: 96  EKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155

Query: 62  IVPNHTLRHLINQWLQ 77
           ++PN  ++ +I+ ++Q
Sbjct: 156 LIPNLAMKEVIDAFIQ 171

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  107 bits (268), Expect = 6e-29
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 9  IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
           P  FR P+   L TDPV L +G   DRS I + L     T P   Q L +  + P   L
Sbjct: 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTESMLEPVPEL 69

Query: 69 RHLINQWLQ 77
          +  I  W++
Sbjct: 70 KEQIQAWMR 78

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  106 bits (267), Expect = 1e-28
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 1  MKEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP 60
            E      P  FR P+   L TDPV L +G   DRS I + L     T P   QTL + 
Sbjct: 18 RAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTES 76

Query: 61 SIVPNHTLRHLINQWLQ 77
           + P   L+  I  W++
Sbjct: 77 MLEPVPELKEQIQAWMR 93

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 99.5 bits (248), Expect = 5e-26
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 3  EDRQMTIPHLFRCPISLDLFTDPVTLCTGQ-TYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
          E+        F  PI   L  DPV L + + T DRS+I + L +   T P     L    
Sbjct: 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQ 71

Query: 62 IVPNHTLRHLINQWLQ 77
          I PN  L+  I +WL 
Sbjct: 72 IRPNTELKEKIQRWLA 87

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 86.0 bits (212), Expect = 3e-18
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 1   MKEDRQMTIPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59
            ++     +P  F  P+   +  DPV L  +    DRS+I+  L + + T P     L  
Sbjct: 880 EEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKL 938

Query: 60  PSIVPNHTLRHLINQWLQ 77
             + PN  LR  I  + +
Sbjct: 939 EDVTPNEELRQKILCFKK 956

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 75.0 bits (184), Expect = 5e-17
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 13 FRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-----GNLTCPVT---MQTLHDPSIV 63
          F CPI+ +    PV     G TY+  +I + + +         CP        +    ++
Sbjct: 8  FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67

Query: 64 PNHTLRHLINQWLQ 77
           +  LR  I    +
Sbjct: 68 QDEALRRAIENHNK 81

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 74.6 bits (183), Expect = 2e-15
 Identities = 21/76 (27%), Positives = 37/76 (48%)

Query: 2   KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
           ++ ++  IP      IS +L  +P    +G TYDR  IE+ L       PVT   L    
Sbjct: 198 EKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257

Query: 62  IVPNHTLRHLINQWLQ 77
           ++PN  ++ +I+ ++ 
Sbjct: 258 LIPNLAMKEVIDAFIS 273

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 9  IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPVTMQTLHD-PSIVPN 65
          IP    C I  D+ TD V + C G +Y    I   L      TCP   Q      +++ N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 66 HTLRHLINQWLQ 77
            LR  +N +  
Sbjct: 70 KFLRQAVNNFKN 81

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 11 HLFRCPISLDLFTDPV-TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHT 67
          H+  C IS  +   PV +  +   +++S +E+++       P+T + L    IV    
Sbjct: 3  HML-CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 8  TIPHLFRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65
          TI  L RC I  + F   + +  C    Y    I K+L +    CP    T+ +P +  N
Sbjct: 18 TIDDLLRCGICFEYFNIAMIIPQC-SHNYCSLCIRKFL-SYKTQCPTCCVTVTEPDLKNN 75

Query: 66 HTLRHLINQWLQM 78
            L  L+      
Sbjct: 76 RILDELVKSLNFA 88

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 57.3 bits (137), Expect = 1e-09
 Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 13  FRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNL-TCPVT--MQTLHDPSIVPNHTL 68
             CPI+   +  P+        +DR  I+ +L       CP     Q +     V +  +
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241

Query: 69  RHLINQWLQ 77
                    
Sbjct: 242 ELRCKIAKM 250

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 13  FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTL-HDPSIVPNHTLRHL 71
           F C    +L   PVT        +  +++   A   +CP     L  +  ++PN  L+ L
Sbjct: 79  FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTL 138

Query: 72  INQWLQ 77
           ++ +  
Sbjct: 139 LDLFFP 144

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 1  MKEDRQMTIPHLFRCPISLDLFTDPVTLCT-GQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59
          M E    +I  +FRC I ++   D        +    S I +WL      CP     L  
Sbjct: 11 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70

Query: 60 PSIVPNHTLRHLINQ 74
            +V       +  Q
Sbjct: 71 RELVNCRWAEEVTQQ 85

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 13  FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-PSIVPNHTLRHL 71
           F+C    +L   P+T        +  +++   A   +CP     L    ++  N  L+ +
Sbjct: 53  FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTV 112

Query: 72  INQ 74
           +NQ
Sbjct: 113 LNQ 115

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 24/211 (11%), Positives = 69/211 (32%), Gaps = 14/211 (6%)

Query: 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEA 249
           ++  + L    +          ++++   + E+K +    G      + +++++   +  
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG----GPQALVNIMRTYTYE 333

Query: 250 S--DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI 307
                  R    L    +N+  +V+ G +  L  ++++   R              L  +
Sbjct: 334 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT------LRNL 387

Query: 308 ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQL 367
            ++          +  LV+++    D      A   L  + C++ + +      G +  L
Sbjct: 388 SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 446

Query: 368 LLLLQSQCSN-RTKTKARMLLKLLRSKWAEE 397
           +  +            A   L+ L S+  + 
Sbjct: 447 VRTVLRAGDREDITEPAICALRHLTSRHQDA 477

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 25/232 (10%), Positives = 78/232 (33%), Gaps = 6/232 (2%)

Query: 159 VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISS 218
           VQ + E    ++  ++       +       +     L       +  +   +V  +   
Sbjct: 121 VQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK 180

Query: 219 SHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAING 278
                 +         ++R + +   ++ E +         L         + + G I  
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPA 238

Query: 279 LIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSE 338
           L+  + + +      A   +  +  LL  E +K A +    G+  +V ++   ++ +   
Sbjct: 239 LVNMLGSPVDSVLFHAITTLHNL--LLHQEGAKMA-VRLAGGLQKMVALL-NKTNVKFLA 294

Query: 339 NAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390
              + L ++   + +++   + +G    L+ ++++    +       +LK+L
Sbjct: 295 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 19/199 (9%)

Query: 208 LCHLVEVIISSSHETKELCC-----------KLGKDDRLLREIISLVHHNSEAS-DAGVR 255
           +  L   +   S    + C            K    + LL  ++ L+  +          
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 421

Query: 256 AFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDAL 314
             S L      N+  + Q G I  L+  +  A  RE        A +  L +     +  
Sbjct: 422 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA-LRHLTSRHQDAEMA 480

Query: 315 IN---NPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL 371
            N      G+  +VK++     H     A   L+                G + +L+ LL
Sbjct: 481 QNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539

Query: 372 QSQCSNRTKTKARMLLKLL 390
                  T+ +  M     
Sbjct: 540 VR-AHQDTQRRTSMGGTQQ 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 8e-08
 Identities = 61/354 (17%), Positives = 105/354 (29%), Gaps = 98/354 (27%)

Query: 42  WLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQHFDPNYLATIDSLSTLKHS 101
           WL   N   P T+             L  L     Q+      DPN+ +  D  S +K  
Sbjct: 186 WLNLKNCNSPETV-------------LEMLQKLLYQI------DPNWTSRSDHSSNIKLR 226

Query: 102 LQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQF 161
           + S +A L   L+           S P  NCL+ L                + ++ +  F
Sbjct: 227 IHSIQAELRRLLK-----------SKPYENCLLVL-------------LNVQNAKAWNAF 262

Query: 162 VEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE 221
              +LSC  K+LL   T    + +  S   +  +  +H S ++                E
Sbjct: 263 ---NLSC--KILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPD-------------E 302

Query: 222 TKELCCK-LGKDDRLLREIISLVHHNSEASDAGVRA---FSALCSTETNRKTLVQEGAIN 277
            K L  K L    + L           E      R     +                  +
Sbjct: 303 VKSLLLKYLDCRPQDLPR---------EVLTTNPRRLSIIAESIRDGLAT--------WD 345

Query: 278 GLIAYISNALTR--ERSLAAIAMARIEQL---LAIENSKDALINNPNGVYALVKMVFRVS 332
                  + LT   E SL  +  A   ++   L++     A I  P  + +   +++   
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHI--PTILLS---LIWFDV 399

Query: 333 DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARML 386
                   +N L        Q +E  I    +  + L L+ +  N       ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI---SIPSIYLELKVKLENEYALHRSIV 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 40/322 (12%), Positives = 74/322 (22%), Gaps = 135/322 (41%)

Query: 82  QHFDPNYLATIDS---LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGF 138
             F+  ++   D        K  L   E        I+     V                
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEID-----HIIMSKDAVSG-------------- 63

Query: 139 LPLLLKQLFGKAESKFSQVYVQFVEESL--------------------------SCVQKL 172
                 +LF    SK  ++  +FVEE L                              +L
Sbjct: 64  ----TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 173 ---------LLVGETESLNLLNE---ESKMESFIVLFEHG------------SCSIKKRL 208
                      V   +    L +   E +    +++   G             C   K  
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQ 177

Query: 209 CHLVEVI--ISSSHETKE---------LCCKLGKD-------------------DRLLRE 238
           C +   I  ++  +             L  ++  +                     L R 
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 239 IISLVHHNS-----EASDAGV-RAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERS 292
           + S  + N         +A    AF+  C      K L+                TR + 
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSC------KILL---------------TTRFKQ 276

Query: 293 LAAIAMARIEQLLAIENSKDAL 314
           +     A     +++++    L
Sbjct: 277 VTDFLSAATTTHISLDHHSMTL 298

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 23/153 (15%), Positives = 59/153 (38%), Gaps = 4/153 (2%)

Query: 227 CKLGKDDRLLREIISLVHHNSEAS-DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISN 285
             +  ++ +   + +L    S  S +   R  +A+C  +  R  +VQEG +  L+     
Sbjct: 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE 547

Query: 286 ALTRERSLAAIAMARIEQLLAIENSKD-ALINNPNGVYALVKMVFRVSDHEGSENAINSL 344
              + +  A  A+ARI   + I      +   + + +  L+ ++ +      +  ++ +L
Sbjct: 548 GTEKGKRHATQALARI--GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMAL 605

Query: 345 MMICCDSLQAREEAICAGVLTQLLLLLQSQCSN 377
             +   +   R+  I    ++++   L      
Sbjct: 606 TNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY 638

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPV-------TMQTLHDPSIVPN 65
           +C I +++  +PVTL    T  +   +  +   +L CP          +     + + N
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVN 75

Query: 66 HTLRHLINQWLQ 77
            L  +I +   
Sbjct: 76 VELWTIIQKHYP 87

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 25/217 (11%), Positives = 75/217 (34%), Gaps = 13/217 (5%)

Query: 181 LNLLNEESK-------MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD 233
           +NL+N +         +     L       +  +   +V  +         +        
Sbjct: 3   VNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 62

Query: 234 RLLREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSL 293
            ++R + +   ++ E +         L         + + G I  L+  + + +      
Sbjct: 63  AIVRTMQN--TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFY 120

Query: 294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ 353
           A   +  +  LL  E +K A+     G+  +V ++   ++ +      + L ++   + +
Sbjct: 121 AITTLHNL--LLHQEGAKMAVRLA-GGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQE 176

Query: 354 AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390
           ++   + +G    L+ ++++    +       +LK+L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 20/190 (10%), Positives = 62/190 (32%), Gaps = 13/190 (6%)

Query: 190 MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEA 249
           ++  + L    +          ++++   + E+K +    G      + +++++   +  
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG----GPQALVNIMRTYTYE 200

Query: 250 S--DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI 307
                  R    L    +N+  +V+ G +  L  ++++   R              L  +
Sbjct: 201 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT------LRNL 254

Query: 308 ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQL 367
            ++          +  LV+++    D      A   L  + C++ + +      G +  L
Sbjct: 255 SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313

Query: 368 LLLLQSQCSN 377
           +  +      
Sbjct: 314 VRTVLRAGDR 323

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 25/218 (11%), Positives = 74/218 (33%), Gaps = 17/218 (7%)

Query: 182 NLLNEESK-------MESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDR 234
           NL+N +         +     L       +  +   +V  +         +         
Sbjct: 1   NLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ---- 56

Query: 235 LLREIISLVHH--NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERS 292
           ++  I+  + +  + E +         L         + + G I  L+  + + +     
Sbjct: 57  MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF 116

Query: 293 LAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL 352
            A   +  +  LL  E +K A+     G+  +V ++   ++ +      + L ++   + 
Sbjct: 117 YAITTLHNL--LLHQEGAKMAVRLA-GGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQ 172

Query: 353 QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390
           +++   + +G    L+ ++++    +       +LK+L
Sbjct: 173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 25/210 (11%), Positives = 68/210 (32%), Gaps = 14/210 (6%)

Query: 191 ESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEAS 250
           +  + L    +          ++++   + E+K +    G      + +++++   +   
Sbjct: 143 QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG----GPQALVNIMRTYTYEK 198

Query: 251 --DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE 308
                 R    L    +N+  +V+ G +  L  ++++   R              L  + 
Sbjct: 199 LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT------LRNLS 252

Query: 309 NSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLL 368
           ++          +  LV+++    D      A   L  + C++ + +      G +  L+
Sbjct: 253 DAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311

Query: 369 LLLQSQCSN-RTKTKARMLLKLLRSKWAEE 397
             +            A   L+ L S+  E 
Sbjct: 312 RTVLRAGDREDITEPAICALRHLTSRHQEA 341

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 19/199 (9%)

Query: 208 LCHLVEVIISSSHETKELCC-----------KLGKDDRLLREIISLVHHNSEAS-DAGVR 255
           +  L   +   S    + C            K    + LL  ++ L+  +          
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAG 285

Query: 256 AFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKD-- 312
             S L      N+  + Q G I  L+  +  A  RE        A +  L +     +  
Sbjct: 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA-LRHLTSRHQEAEMA 344

Query: 313 -ALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL 371
              +    G+  +VK++     H     A   L+                G + +L+ LL
Sbjct: 345 QNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403

Query: 372 QSQCSNRTKTKARMLLKLL 390
                  T+ +  M     
Sbjct: 404 VR-AHQDTQRRTSMGGTQQ 421

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA-----GNLTCPVTMQTLHDPSIVPNHT 67
            CPI L+L  +PV+     ++ R+ I     +     G   CPV        ++ PN  
Sbjct: 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79

Query: 68 LRHLI 72
          + +++
Sbjct: 80 VANIV 84

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 13  FRCPISLDLFTDPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLH-DPSIVPNHTLR 69
             CPI LD+  + +T   C    +    I   L +GN  CP   + L    S+ P+    
Sbjct: 55  LMCPICLDMLKNTMTTKEC-LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 113

Query: 70  HLINQ 74
            LI++
Sbjct: 114 ALISK 118

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWL--AAGNLTCPVTMQTLHDPSIVPNHTLRH 70
            CPI L+L  +PV+      + +  + K L    G   CP+    +   S+  +     
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81

Query: 71 LINQWLQMGGGQHFDP 86
          L+ + L++      D 
Sbjct: 82 LVEELLKIICAFQLDT 97

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 1  MKEDRQMTIPHL---FRCPISLDLFTDPVTLCT-GQTYDRSSIEKWLAAGNLTCPV---- 52
          M    ++ I  L     C +    F D  T+     ++ ++ I ++L   +  CP+    
Sbjct: 1  MHRTTRIKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQ 59

Query: 53 TMQTLHDPSIVPNHTLRHLINQ 74
            +T    +I  + TL+ ++ +
Sbjct: 60 VHKTRPLLNIRSDKTLQDIVYK 81

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 13/69 (18%)

Query: 13 FRCPISLDLFTDPVTL---------CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
            CPI L+L T P++L         C    + +S ++K    G  +CPV   +    +I 
Sbjct: 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDK----GESSCPVCRISYQPENIR 75

Query: 64 PNHTLRHLI 72
          PN  + +++
Sbjct: 76 PNRHVANIV 84

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 58/290 (20%), Positives = 109/290 (37%), Gaps = 22/290 (7%)

Query: 94  SLSTLKHSLQSHEATLETKLQIVQKIHVVL-RESPPASNCLIQLGFLPLLLKQLFGKAES 152
           S+  +   + S+   LE++LQ  Q    +L RE  P  + +I+ G +P  +  L      
Sbjct: 58  SVEDIVKGINSNN--LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL-----G 110

Query: 153 KFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLV 212
           K     +QF  ES   +  +   G +E    + +   + +FI L       I ++    +
Sbjct: 111 KTDCSPIQF--ESAWALTNIA-SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 167

Query: 213 EVIISSSHETKELCCKLGKDDRLLREIISLVHHNSEASDAGVR----AFSALCSTETNRK 268
             I       ++L  K G  D LL  +       S  +   +R      S LC  +    
Sbjct: 168 GNIAGDGSAFRDLVIKHGAIDPLLALLAV--PDLSTLACGYLRNLTWTLSNLCRNKNPAP 225

Query: 269 TLVQ-EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKM 327
            L   E  +  L+  + +      + +  A   I  L    N +  ++     V  LVK+
Sbjct: 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWA---ISYLTDGPNERIEMVVKKGVVPQLVKL 282

Query: 328 VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSN 377
           +   ++      A+ ++  I   + +  ++ I AG L     LL +  +N
Sbjct: 283 L-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN 331

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 40/267 (14%), Positives = 91/267 (34%), Gaps = 17/267 (6%)

Query: 125 ESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL 184
            +   SN       +  ++K +            ++   ++    +KLL   +   ++ +
Sbjct: 45  MADIGSNQGTVNWSVEDIVKGINSN--------NLESQLQATQAARKLLSREKQPPIDNI 96

Query: 185 NEESKMESFIVLFEHGSCSIKKRL-CHLVEVIISSSHETKELCCKLGKDDRLLREIISLV 243
                +  F+       CS  +      +  I S + E  +     G        I  L 
Sbjct: 97  IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF---ISLLA 153

Query: 244 HHNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMA--R 300
             ++  S+  V A   +       R  +++ GAI+ L+A ++       +   +      
Sbjct: 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213

Query: 301 IEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC 360
           +  L   +N    L      +  LV+++   +D E   ++  ++  +     +  E  + 
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVK 272

Query: 361 AGVLTQLLLLLQSQCSNRTKTKARMLL 387
            GV+ QL+ LL +       T A   +
Sbjct: 273 KGVVPQLVKLLGAT-ELPIVTPALRAI 298

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 21/288 (7%)

Query: 93  DSLSTLKHSLQSHEATLETKLQIVQKIHVVL-RESPPASNCLIQLGFLPLLLKQLFGKAE 151
             L  +   L S +  ++ +L    K   +L RE  P  + +IQ G +P L++ +     
Sbjct: 87  QELPQMTQQLNSDD--MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM----- 139

Query: 152 SKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHL 211
            +     +Q   E+   +  +   G +    ++ +   +  FI L   GS  +K++    
Sbjct: 140 RENQPEMLQL--EAAWALTNIA-SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 196

Query: 212 VEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTL 270
           +  +   S + ++   +       +  I+ L   +            S LC  +  +   
Sbjct: 197 LGNVAGDSTDYRDYVLQCN----AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252

Query: 271 VQE-GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF 329
                A+  L   I +  T     A  A++    L          + +      LV+++ 
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISY---LSDGPQEAIQAVIDVRIPKRLVELL- 308

Query: 330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSN 377
                     A+ ++  I   +    +  I AGVL  L LLL S   N
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 356

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 10/228 (4%)

Query: 162 VEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSH 220
              +    +++L       ++++ +   +   +          ++      +  I S + 
Sbjct: 104 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163

Query: 221 ETKELCCKLGKDDRLLREIISLVHHNSEASDAGVRAFSALC-STETNRKTLVQEGAINGL 279
              ++          ++    L   + E  +  + A   +   +   R  ++Q  A+  +
Sbjct: 164 AQTKVVVDADAVPLFIQ---LLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPI 220

Query: 280 IAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSEN 339
           +   ++    + SL   A   +  L   +  +         +  L K++    D E   +
Sbjct: 221 LGLFNS---NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVD 276

Query: 340 AINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLL 387
           A  ++  +     +A +  I   +  +L+ LL  + S   +T A   +
Sbjct: 277 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAV 323

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 8/162 (4%)

Query: 236 LREIISLVHH-NSEASDAGVRAFSALCSTETNRK--TLVQEGAINGLIAYISNALTRERS 292
           L ++   ++  + +   +    F  + S E       ++Q G +  L+ ++         
Sbjct: 89  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 148

Query: 293 LAAIAMARIEQLLAIENS-KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS 351
           L A   A     +A   S +  ++ + + V   ++++      E  E AI +L  +  DS
Sbjct: 149 LEA---AWALTNIASGTSAQTKVVVDADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDS 204

Query: 352 LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393
              R+  +    +  +L L  S   +  +T    L  L R K
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 12 LFRCPISLDLFTDPVTLCT-GQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRH 70
          L RC    ++  +PV L      +  + +   +  G   CPV         +  N  L  
Sbjct: 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG---CPVCYTPAWIQDLKINRQLDS 78

Query: 71 LINQWLQM 78
          +I    ++
Sbjct: 79 MIQLCSKL 86

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 9  IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPVTMQTLHDP 60
          IP    C I  D+ TD V + C G +Y    I   L      TCP   Q    P
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 12/69 (17%)

Query: 13 FRCPISLDLFTDPVTL---------CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV 63
            CPI L+L T+P++L         C   +   +        G  +CPV   +     + 
Sbjct: 13 VTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSM---GGKSSCPVCGISYSFEHLQ 69

Query: 64 PNHTLRHLI 72
           N  L +++
Sbjct: 70 ANQHLANIV 78

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLI 72
          + CPI L    + V    G  + ++ I K +      CPV  + L +  + P++  +  I
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78

Query: 73 NQ 74
            
Sbjct: 79 LS 80

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 25/205 (12%)

Query: 211 LVEVIISSSHETKELCCK------LGKDD---RLLRE---IISLVHHNSEASDAGV---- 254
           LV  + S S + +++            D    + LRE   + +L+    E          
Sbjct: 132 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 191

Query: 255 -RAFSALCST-ETNRKTLVQE-GAINGLIAYISNALTRERS----LAAIAMARIEQLLAI 307
             A   L +    N+  +    GA+  L+  ++                 +  +  L+A 
Sbjct: 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251

Query: 308 ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQL 367
                 ++   N +  L++ + +        NA  +L  +   + + +E     G ++ L
Sbjct: 252 NEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310

Query: 368 LLLLQSQCSNRTKTKARMLLKLLRS 392
             L+ S+        +   L+ L +
Sbjct: 311 KNLIHSK-HKMIAMGSAAALRNLMA 334

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 6/50 (12%), Positives = 18/50 (36%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI 62
          ++C     +   P     G  +  S +   L++ +  C    +++    +
Sbjct: 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 29/162 (17%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 236 LREIISLVHHNSEA--SDAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERS 292
           L ++   ++ +       A  R FS + S      + ++  GA+  L+  +S+   +   
Sbjct: 14  LPQMTQQLNSDDMQEQLSA-TRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 293 LAAIAMARIEQLLAIENSKDA-LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS 351
            A  A++ I    A   ++    + +   + ALV+++    + +  + A+ +L  I    
Sbjct: 73  EALWALSNI----ASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGG 127

Query: 352 LQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK 393
            +  +  I AG L  L+ LL S      +     L  +    
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 8/164 (4%)

Query: 235 LLREIISLVHH-NSEASDAGVRAFSALCSTETN---RKTLVQEGAINGLIAYISNALTRE 290
           +  ++I ++   + E   +  + F  L S E N    + +   G +   + ++       
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCD 350
               +  +  +  + +  + +  ++     V   ++++      +  E A+ +L  I  D
Sbjct: 81  LQFESAWV--LTNIASGNSLQTRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIAGD 137

Query: 351 SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKA-RMLLKLLRSK 393
           S   R+  +   +L  LL L   Q        A   L  L R K
Sbjct: 138 STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 44/318 (13%), Positives = 112/318 (35%), Gaps = 25/318 (7%)

Query: 89  LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFG 148
           ++T   ++     L+  E     + +    +  +   +   +  +IQ G +P+ ++ L  
Sbjct: 60  ISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL-- 116

Query: 149 KAESKFSQVYVQFVEESLSCVQKL--LLVGETESLNLLNEESKMESFIVLFEHGSCSIKK 206
              S+F  V  Q        V  L  +    T   + + + + +   + LF   +     
Sbjct: 117 --SSEFEDVQEQ-------AVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167

Query: 207 RLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNSE--ASDAGVRAFSALCS-T 263
           R        +           +  K    L  +  L+  +     +DA   A S L    
Sbjct: 168 RNAVWALSNLCRGKSPPP---EFAKVSPCLNVLSWLLFVSDTDVLADA-CWALSYLSDGP 223

Query: 264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYA 323
               + ++  G    L+  + +    +  + + A+  +  ++  ++ +  +I N + + +
Sbjct: 224 NDKIQAVIDAGVCRRLVELLMHN---DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQS 280

Query: 324 LVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKA 383
           L+ ++         + A  ++  I   +    +  I A +   L+ +LQ+      K  A
Sbjct: 281 LLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339

Query: 384 RMLLKLLRSKWAEELKHV 401
             +        AE++K++
Sbjct: 340 WAITNATSGGSAEQIKYL 357

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65
           +  C I L     PV+L     +    ++     G   C +  Q + +  +   
Sbjct: 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLDSG 67

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWL--AAGNLTCPV 52
            C + L+   +PV +  G  + ++ I +W      +  CPV
Sbjct: 16 ASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPV 57

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%)

Query: 8  TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHT 67
           +   + CPI L    + V    G  + ++ I K +      CPV  + L +  + P++ 
Sbjct: 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNF 73

Query: 68 LRHLINQ 74
           +  I  
Sbjct: 74 AKREILS 80

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 31/205 (15%), Positives = 68/205 (33%), Gaps = 25/205 (12%)

Query: 211 LVEVIISSSHETKELCCK------LGKDDR---LLRE---IISLVHHNSEASDAGVR--A 256
           LV  + S S + +++            D      LRE   + +L+    E          
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307

Query: 257 FSALCS----TETNRKTLVQE-GAINGLIAYISNALTRERS----LAAIAMARIEQLLAI 307
            SAL +       N+  +    GA+  L+  ++                 +  +  L+A 
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367

Query: 308 ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQL 367
                 ++   N +  L++ + +        NA  +L  +   + + +E     G ++ L
Sbjct: 368 NEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 426

Query: 368 LLLLQSQCSNRTKTKARMLLKLLRS 392
             L+ S+        +   L+ L +
Sbjct: 427 KNLIHSK-HKMIAMGSAAALRNLMA 450

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWL--AAGNLTCPV 52
            CPI LD+   PVT+  G  +    I +    + G   CP+
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV-PNHTLRHL 71
            C I   +  DPV       + R  I + L      CP          +  P  +  ++
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI 83

Query: 72 INQ 74
          +N 
Sbjct: 84 LNS 86

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 28/150 (18%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 242 LVHHNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR 300
           L   N +     + A S + S      + ++  GA+  L+  +S+   +    A  A++ 
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 301 IEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC 360
           I           A+I+    + ALV+++    + +  + A+ +L  I     + ++    
Sbjct: 123 I--ASGGNEQIQAVIDA-GALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKE 178

Query: 361 AGVLTQLLLLLQSQCSNRTKTKARMLLKLL 390
           AG L +L  L   + + + + +A+  L+ L
Sbjct: 179 AGALEKLEQLQSHE-NEKIQKEAQEALEKL 207

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPV 52
            CPI LD+   PVT+  G  +    I +      G   CP+
Sbjct: 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 13 FRCPISLDLFTDPVTLCT-GQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN 65
            C I      D  T+     T+ +S I +     N  CP     +H    +  
Sbjct: 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-RCPKCNIVVHQTQPLSG 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.98
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.94
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.94
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.93
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.85
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.84
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.75
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.75
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.74
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.74
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.68
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.64
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.62
3grl_A	651	General vesicular transport factor P115; vesicle t	99.61
3grl_A	651	General vesicular transport factor P115; vesicle t	99.54
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.53
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.49
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.48
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.47
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.46
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.43
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.43
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.42
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.42
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.41
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.4
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.39
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.38
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.38
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.38
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.37
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.36
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.35
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.35
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.34
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.32
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.31
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.3
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.3
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.27
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.27
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.26
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.25
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.22
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.22
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.2
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.2
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.2
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.18
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.17
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.16
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.14
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.14
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.12
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.07
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.04
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.03
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.02
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.01
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.01
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.0
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.0
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.99
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.98
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.98
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.95
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.9
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.89
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.88
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.85
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.8
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.76
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.76
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.76
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	98.74
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.71
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.68
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.68
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.68
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.65
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.61
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.58
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.55
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.54
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.53
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.52
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.48
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.39
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.37
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.36
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.34
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.33
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.3
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.27
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.23
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.23
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.22
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.21
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.15
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.1
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.03
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.93
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.89
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.87
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.78
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.73
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.73
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.72
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.72
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.7
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.68
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.68
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.61
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.6
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.59
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.4
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.39
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.35
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.3
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.89
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.81
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.45
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.14
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.77
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.67
3nw0_A	238	Non-structural maintenance of chromosomes element	95.21
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.17
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	95.15
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.07
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	94.75
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.72
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	94.61
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.04
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	93.79
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.53
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.44
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.41
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	91.63
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	90.7
2x1g_F	971	Cadmus; transport protein, developmental protein,	89.88
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	89.78
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	89.72
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	89.33
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	88.15
2x19_B	963	Importin-13; nuclear transport, protein transport;	87.77
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	86.64
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	86.23
2x19_B	963	Importin-13; nuclear transport, protein transport;	83.76
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	83.46
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	83.0
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	82.74
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	81.1
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	81.06

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=3e-34  Score=275.65  Aligned_cols=281  Identities=12%  Similarity=0.117  Sum_probs=236.8

Q ss_pred             hHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcc---cchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          109 LETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAES---KFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       109 ~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~---~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      .+.+..|++.|.+++.. +++|+.|++.|++++|+.+|.+....   ..+..++.++++|++ +|.+|+.++++.+..+.
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~-aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM-ALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH-HHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHH-HHHHHHcCCHHHHHHHH
Confidence            44566899999999877 67999999999999999999642100   000124779999999 99999988776666663


Q ss_pred             -cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcC
Q 015728          186 -EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCS  262 (401)
Q Consensus       186 -~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~  262 (401)
                       ..|+||.|+.+|++++.++++.|+++|.+| +..+ ++++|..|.+. |+||+|+.+| + ++.++++.|+.+|+||+.
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL-s~~~-~~~~k~~i~~~-G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~  200 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNL-SWRA-DVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSA  200 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH-HTTC-CHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHH-hccC-CHHHHHHHHHC-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence             456699999999999999999999999999 7641 13789999886 8899999986 4 566799999999999998


Q ss_pred             -CCchhHHHH-hcCcHHHHHHHHHhhccccc---hHHHHHHHHHHHHhC----CHhhHHHHHhCCCcHHHHHHHHHhcCC
Q 015728          263 -TETNRKTLV-QEGAINGLIAYISNALTRER---SLAAIAMARIEQLLA----IENSKDALINNPNGVYALVKMVFRVSD  333 (401)
Q Consensus       263 -~~~n~~~iv-~~G~v~~Lv~lL~~~~~~~~---~~~~~a~~~L~~La~----~~~~~~~~~~~~g~i~~Lv~~l~~~~~  333 (401)
                       +++|+..++ +.|+||+|+++|..  ..+.   ++++.|+++|.+|+.    +++++..+. +.|+|+.|++ ++++++
T Consensus       201 ~~~~nk~~i~~~~Gai~~Lv~lL~~--~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~-lL~~~~  276 (354)
T 3nmw_A          201 HCTENKADICAVDGALAFLVGTLTY--RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQ-HLKSHS  276 (354)
T ss_dssp             TCHHHHHHHHHSTTHHHHHHHHTTC--CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHH-HTTCSC
T ss_pred             cChhhhHHHHHhcCcHHHHHHHhcc--CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHH-HHcCCC
Confidence             778999998 79999999999984  2222   589999999999995    788888885 8999999999 677888


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728          334 HEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK  399 (401)
Q Consensus       334 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~  399 (401)
                      ...++.|+++|++|+..+++.++.+++.|+|+.|+.+|+++ ++..|+.|+++|+.|....|+..+
T Consensus       277 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence            89999999999999987788899999999999999999988 999999999999999986665443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.4e-33  Score=278.92  Aligned_cols=277  Identities=12%  Similarity=0.115  Sum_probs=233.2

Q ss_pred             HHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcc---cchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc-cC
Q 015728          112 KLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAES---KFSQVYVQFVEESLSCVQKLLLVGETESLNLLN-EE  187 (401)
Q Consensus       112 ~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~---~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~-~~  187 (401)
                      +.+|++.|.+++. ++.+|+.|.+.|++++|+.+|......   ..+..++.++++|++ +|.+|+.+++..+..+. ..
T Consensus       165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~-aL~nLa~~~~~~k~~i~~~~  242 (458)
T 3nmz_A          165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM-ALTNLTFGDVANKATLCSMK  242 (458)
T ss_dssp             THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHH-HHHHHhCCCcccHHHHHHcC
Confidence            3489999999955 488999999999999999999531000   000124679999999 99999988876666653 45


Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcC-CC
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCS-TE  264 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~-~~  264 (401)
                      |+||.|+.+|++++.++++.|+++|.+| +..+ ++++|..|.+. |+|++|+.+| + ++..+++.|+.+|+||+. ++
T Consensus       243 GaIp~LV~LL~s~~~~v~~~A~~aL~nL-s~~~-~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~  319 (458)
T 3nmz_A          243 GCMRALVAQLKSESEDLQQVIASVLRNL-SWRA-DVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCT  319 (458)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHH-TSSC-CHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             CcHHHHHHHHhCCCHHHHHHHHHHHHHH-hcCC-CHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence            6699999999999999999999999999 7641 13789999886 8899999986 4 456799999999999998 77


Q ss_pred             chhHHHH-hcCcHHHHHHHHHhhccccc---hHHHHHHHHHHHHhC----CHhhHHHHHhCCCcHHHHHHHHHhcCChhH
Q 015728          265 TNRKTLV-QEGAINGLIAYISNALTRER---SLAAIAMARIEQLLA----IENSKDALINNPNGVYALVKMVFRVSDHEG  336 (401)
Q Consensus       265 ~n~~~iv-~~G~v~~Lv~lL~~~~~~~~---~~~~~a~~~L~~La~----~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~  336 (401)
                      +|+..++ +.|+||+|+++|..  ..+.   ++++.|+++|.+|+.    +++++..+. +.|+|+.|++ +++.++..+
T Consensus       320 ~nk~~I~~~~Gal~~Lv~LL~~--~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~-LL~~~~~~v  395 (458)
T 3nmz_A          320 ENKADICAVDGALAFLVGTLTY--RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQ-HLKSHSLTI  395 (458)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTC--CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHH-HSSCSCHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHhcC--CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHH-HHcCCChHH
Confidence            8999998 79999999999984  2222   489999999999995    788888886 8899999999 678888899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          337 SENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       337 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      ++.|+++|++|+..+++.+..+++.|+|+.|+.+|+++ ++..++.|+++|+.|..+.|+..
T Consensus       396 ~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~p~ky  456 (458)
T 3nmz_A          396 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKY  456 (458)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCCSCC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHhhh
Confidence            99999999999987788899999999999999999988 99999999999999998666543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.98  E-value=4e-31  Score=263.67  Aligned_cols=279  Identities=17%  Similarity=0.148  Sum_probs=232.4

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      ++.+++.|++.  +++.|..|+..|++++..++.+|..+++.|+||.||.+|++++        +++++.|++ +|.+|+
T Consensus         4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~--------~~~~~~A~~-aL~nLa   72 (457)
T 1xm9_A            4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN--------QNVQQAAAG-ALRNLV   72 (457)
T ss_dssp             HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC--------HHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHHHh
Confidence            56677778754  5789999999999999988888989999999999999999876        459999999 999999


Q ss_pred             CCchhhhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc--------C
Q 015728          175 VGETESLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH--------H  245 (401)
Q Consensus       175 ~~~~~~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--------~  245 (401)
                      .++++.+..+.+.|+||+|+.+|+ +++.++++.|+++|.+| +..+   ++|..|+.  |++|+|+.+|.        +
T Consensus        73 ~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL-a~~~---~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~  146 (457)
T 1xm9_A           73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL-SSTD---ELKEELIA--DALPVLADRVIIPFSGWCDG  146 (457)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH-HTSS---STHHHHHH--HHHHHHHHHTTHHHHTCC--
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH-hcCH---HhHHHHHh--ccHHHHHHHHhccccccccC
Confidence            876677777779999999999999 88999999999999999 7765   88998875  88999999992        1


Q ss_pred             ---------CchhHHHHHHHHHHhcCCCchhHHHHhc-CcHHHHHHHHHhh---ccccchHHHHHHHHHHHHhCCH----
Q 015728          246 ---------NSEASDAGVRAFSALCSTETNRKTLVQE-GAINGLIAYISNA---LTRERSLAAIAMARIEQLLAIE----  308 (401)
Q Consensus       246 ---------~~~~~~~a~~aL~~Ls~~~~n~~~iv~~-G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~~----  308 (401)
                               +..+.+.|+++|+||+.+++++..+++. |+||+|+++|.+.   +..+..++++++.+|.+|+...    
T Consensus       147 ~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~  226 (457)
T 1xm9_A          147 NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV  226 (457)
T ss_dssp             -------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS
T ss_pred             ccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccC
Confidence                     2346669999999999888899999998 9999999999841   1145678999999999997321    


Q ss_pred             -----------------------------------------------hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHH
Q 015728          309 -----------------------------------------------NSKDALINNPNGVYALVKMVFRVSDHEGSENAI  341 (401)
Q Consensus       309 -----------------------------------------------~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~  341 (401)
                                                                     ++...+ .+.|+++.|+.+|...+++..++.|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~~lL~~~~~~~~~e~a~  305 (457)
T 1xm9_A          227 PTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL-YHSDAIRTYLNLMGKSKKDATLEACA  305 (457)
T ss_dssp             CCHHHHHHHTC----------------------------CCCCCSSCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             cchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH-hCcchHHHHHHHHhhcCCHHHHHHHH
Confidence                                                           111223 36788999999666666789999999


Q ss_pred             HHHHHHhcCCH----HH-HHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          342 NSLMMICCDSL----QA-REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       342 ~~L~~l~~~~~----~~-~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ++|++||.++.    .. +..+.+.|+++.|+.+|+++ ++.+++.|+|+|+.++.
T Consensus       306 ~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             HHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhc
Confidence            99999997643    22 32334699999999999998 99999999999999987

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=1.1e-30  Score=258.05  Aligned_cols=296  Identities=14%  Similarity=0.118  Sum_probs=240.5

Q ss_pred             hhHHHHHHhhhhhh----------cChHHHHHHHHHHHHHHhcCchhhhHHHhcCCh----------HHHHHHhccCCcc
Q 015728           93 DSLSTLKHSLQSHE----------ATLETKLQIVQKIHVVLRESPPASNCLIQLGFL----------PLLLKQLFGKAES  152 (401)
Q Consensus        93 ~~~~~l~~~l~~~~----------~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i----------~~Lv~lL~s~~~~  152 (401)
                      ..++.|+++|+..+          ++++.|.+|++.|.+++...++.....++.|++          +.+++++.+....
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  149 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG  149 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence            56778889888542          457999999999999999999888888888888          7778888765311


Q ss_pred             cchhhhHHHHH-------HHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhc-----------CCHHHHHHHHHHHHH
Q 015728          153 KFSQVYVQFVE-------ESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEH-----------GSCSIKKRLCHLVEV  214 (401)
Q Consensus       153 ~~~~~~~~~~~-------~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~-----------~~~~~~~~aa~~L~~  214 (401)
                      . +.....+.+       .|++ +|.+++.+ +++|..+.+.|++++|+.+|..           .+..++.+|+++|.+
T Consensus       150 ~-~~~~~~~~~~~~~~~~qAv~-aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n  226 (458)
T 3nmz_A          150 M-DQDKNPMPAPVEHQICPAVC-VLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN  226 (458)
T ss_dssp             S-CCCSCC--CCCTTTTHHHHH-HHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             c-ccccCCccchhhHHHHHHHH-HHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence            0 000000333       8999 99999866 5667777799999999999952           246789999999999


Q ss_pred             HHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCC--CchhHHHHhcCcHHHHHHHHHhhccccc
Q 015728          215 IISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCST--ETNRKTLVQEGAINGLIAYISNALTRER  291 (401)
Q Consensus       215 l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~--~~n~~~iv~~G~v~~Lv~lL~~~~~~~~  291 (401)
                      | +..+  +.++..+....|+||+|+.+|+ ++.+++..|+++|+||+..  ++||..+++.|+||+|+++|..  +++.
T Consensus       227 L-a~~~--~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~--s~~~  301 (458)
T 3nmz_A          227 L-TFGD--VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE--VKKE  301 (458)
T ss_dssp             H-HTTC--HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT--CCSH
T ss_pred             H-hCCC--cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc--CCCH
Confidence            9 7654  2578777655688999999994 6778999999999999974  5689999999999999998753  5677


Q ss_pred             hHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhcCCh----hHHHHHHHHHHHHhc---CCHHHHHHHHHcCc
Q 015728          292 SLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMVFRVSDH----EGSENAINSLMMICC---DSLQAREEAICAGV  363 (401)
Q Consensus       292 ~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~g~  363 (401)
                      .+++.|+.+|++|+. +++++..++...|+|+.|++ +++.++.    .+++.|+++|++|+.   .+++.++.+++.|+
T Consensus       302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~-LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~  380 (458)
T 3nmz_A          302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVG-TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC  380 (458)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHH-HTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHH-HhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence            899999999999998 78899998768999999999 4555433    389999999999997   56788999999999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          364 LTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       364 v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      ++.|+.+|+++ +..+++.|+++|..|+...++..
T Consensus       381 i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~  414 (458)
T 3nmz_A          381 LQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQ  414 (458)
T ss_dssp             HHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999988 89999999999999984345543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=2e-30  Score=261.95  Aligned_cols=284  Identities=12%  Similarity=0.114  Sum_probs=233.0

Q ss_pred             CChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHH
Q 015728           90 ATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV  169 (401)
Q Consensus        90 ~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~  169 (401)
                      .....+..++++|.+  ++.+.|.+|+..|++++..++.+|..|++.|+||+||.+|++++        .+++++|++ +
T Consensus        45 ~~~~~i~~LV~~L~s--~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~--------~~vq~~Aa~-A  113 (584)
T 3l6x_A           45 WRQPELPEVIAMLGF--RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK--------KEVHLGACG-A  113 (584)
T ss_dssp             CCCCCHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS--------HHHHHHHHH-H
T ss_pred             cccccHHHHHHHHCC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC--------HHHHHHHHH-H
Confidence            334567788888874  46789999999999999999999999999999999999999876        459999999 9


Q ss_pred             HHhhcCC-chhhhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc---
Q 015728          170 QKLLLVG-ETESLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH---  244 (401)
Q Consensus       170 L~~l~~~-~~~~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~---  244 (401)
                      |.+|+.+ +++++..|.+.|+|++|+.+|++ ++.+++++|+.+|++| |..+   ++|..|+.  |+||+|+.++.   
T Consensus       114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL-S~~~---~~k~~I~~--~alp~Lv~LL~~p~  187 (584)
T 3l6x_A          114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHD---SIKMEIVD--HALHALTDEVIIPH  187 (584)
T ss_dssp             HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH-TTSG---GGHHHHHH--HTHHHHHHHTHHHH
T ss_pred             HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCc---hhhHHHHh--ccHHHHHHHHhccc
Confidence            9999975 45667777799999999999997 5788999999999999 8765   89999984  56999999871   


Q ss_pred             ----------------CCchhHHHHHHHHHHhcCCCc-hhHHHHhc-CcHHHHHHHHHhh---ccccchHHHHHHHHHHH
Q 015728          245 ----------------HNSEASDAGVRAFSALCSTET-NRKTLVQE-GAINGLIAYISNA---LTRERSLAAIAMARIEQ  303 (401)
Q Consensus       245 ----------------~~~~~~~~a~~aL~~Ls~~~~-n~~~iv~~-G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~  303 (401)
                                      .+..++++|+++|+||+.+.+ +|..|++. |+|++|+++|.+.   ...+...+++|+++|+|
T Consensus       188 sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N  267 (584)
T 3l6x_A          188 SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN  267 (584)
T ss_dssp             HCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence                            124699999999999998765 59999984 6788999999841   12466789999999999


Q ss_pred             HhCCHhhH--------------------------HHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC----HH
Q 015728          304 LLAIENSK--------------------------DALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS----LQ  353 (401)
Q Consensus       304 La~~~~~~--------------------------~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~----~~  353 (401)
                      |+...+..                          ..+. +.++|+.|+.++...+++.++++|+++|++||..+    ..
T Consensus       268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~-~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~  346 (584)
T 3l6x_A          268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLF-QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY  346 (584)
T ss_dssp             HHTTHHHHSTTCCC--------------CCCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred             hhccccccccchhhhhhhcccccccccccCchhHHHHh-cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHH
Confidence            99763211                          1111 34567788995445567899999999999999764    23


Q ss_pred             HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          354 AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       354 ~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .+..+.++|+++.|+.||.++ ++.+++.|.++|+.|+.
T Consensus       347 ~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~  384 (584)
T 3l6x_A          347 IRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAV  384 (584)
T ss_dssp             HHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            454556789999999999988 99999999999999987

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=9.7e-30  Score=257.11  Aligned_cols=287  Identities=11%  Similarity=0.191  Sum_probs=244.3

Q ss_pred             CCCCCC----hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHH
Q 015728           86 PNYLAT----IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQF  161 (401)
Q Consensus        86 ~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~  161 (401)
                      ..||++    ..+++.|+++|+.. ++++.|.+|++.|.+++..++.+++.+++.|+||.|+.+|.+++        .++
T Consensus        89 ~~ppi~~ii~~G~ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~--------~~v  159 (510)
T 3ul1_B           89 KQPPIDNIIRAGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH--------AHI  159 (510)
T ss_dssp             SCCCHHHHHHTTHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHH
T ss_pred             CCchHHHHHHCCCHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC--------HHH
Confidence            445654    37788999988754 45789999999999999999999999999999999999999876        459


Q ss_pred             HHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCC-----HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH
Q 015728          162 VEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGS-----CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL  236 (401)
Q Consensus       162 ~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i  236 (401)
                      ++.|++ +|++|+.+.++.+..+.+.|++++|+.+|.+.+     ...+..++++|.++ +...   .....+....|++
T Consensus       160 ~e~A~~-aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl-~~~~---~~~~~~~~~~~~l  234 (510)
T 3ul1_B          160 SEQAVW-ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL-CRNK---NPAPPLDAVEQIL  234 (510)
T ss_dssp             HHHHHH-HHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH-HCCC---SSCCCHHHHHHHH
T ss_pred             HHHHHH-HHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH-hhcc---cchhHHHHHHhHH
Confidence            999999 999999888888888889999999999998654     34678899999999 6544   2333333335899


Q ss_pred             HHHHHHc-cCCchhHHHHHHHHHHhcCCCchh-HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHH
Q 015728          237 REIISLV-HHNSEASDAGVRAFSALCSTETNR-KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDA  313 (401)
Q Consensus       237 ~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~  313 (401)
                      |.|+.+| +++.+++..|+++|.+|+..+.++ ..+++.|++|.|+++|.   +.+..++..++.+|.+++...+ .+..
T Consensus       235 p~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~al~aL~nl~~~~~~~~~~  311 (510)
T 3ul1_B          235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQK  311 (510)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc---CCChhhhhHHHHHHHHhhcCCHHHHHH
Confidence            9999999 466779999999999999876654 55678999999999999   6788999999999999987654 4555


Q ss_pred             HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ++ +.|+++.|+. ++++++..+++.|+++|.+|+.++++.+..+.+.|+++.|+.+++++ +..+|+.|+++|..+..
T Consensus       312 i~-~~g~l~~L~~-LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          312 VI-DAGALAVFPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HH-HTTGGGGCC--CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred             Hh-hccchHHHHH-HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            54 8899999999 67888889999999999999999888898999999999999999988 99999999999999876

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=3e-29  Score=261.35  Aligned_cols=285  Identities=14%  Similarity=0.134  Sum_probs=239.4

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch-----------------------------hh---hHHHhcCChH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP-----------------------------AS---NCLIQLGFLP  140 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~-----------------------------~r---~~i~~~G~i~  140 (401)
                      ..+..|+++|++  ++...+..|+..|.|++...+.                             ++   +.++++|+||
T Consensus       421 g~Ip~LV~LL~s--~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp  498 (810)
T 3now_A          421 ASIHALMDLARG--GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT  498 (810)
T ss_dssp             HHHHHHHHHHHT--TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             chHHHHHHHhCC--CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence            556677787874  3567999999999999986531                             23   6788999999


Q ss_pred             HHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 015728          141 LLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSH  220 (401)
Q Consensus       141 ~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~  220 (401)
                      .|+.+|++++        +.++++|+| +|.||+.+ ++.+..+.+.|++|+|+.+|++++...|+.|+++|.+| +...
T Consensus       499 ~LV~LL~s~s--------~~vqe~Aa~-aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL-~~~~  567 (810)
T 3now_A          499 ALCALAKTES--------HNSQELIAR-VLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI-GITI  567 (810)
T ss_dssp             HHHHHHTCCC--------HHHHHHHHH-HHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH-HHHS
T ss_pred             HHHHHHcCCC--------HHHHHHHHH-HHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHH-hcCC
Confidence            9999999877        459999999 99999965 45677777999999999999999999999999999999 5543


Q ss_pred             chhhhhhhhcc--chHHHHHHHHHccCC-ch-hHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHH
Q 015728          221 ETKELCCKLGK--DDRLLREIISLVHHN-SE-ASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAA  295 (401)
Q Consensus       221 ~~~~~~~~i~~--~~g~i~~Lv~lL~~~-~~-~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~  295 (401)
                         +....+..  ..|+||+|+.+|+.+ .. .+..|+++|.||+.. ++++..++++|++|.|+.+|.   +++..+++
T Consensus       568 ---~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~---s~~~~Vq~  641 (810)
T 3now_A          568 ---NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM---EDHLYLTR  641 (810)
T ss_dssp             ---CHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SCCTTHHH
T ss_pred             ---ChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---CCCHHHHH
Confidence               22222211  137899999999643 33 456899999999976 578999999999999999999   67889999


Q ss_pred             HHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHHhhcC
Q 015728          296 IAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC-AGVLTQLLLLLQSQ  374 (401)
Q Consensus       296 ~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~~  374 (401)
                      .|+++|++|+.+++.+..++...|+++.|+. +++..+...++.|+++|++|+.+++...+.+++ .|+++.|+.|++++
T Consensus       642 ~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~-LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~  720 (810)
T 3now_A          642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLAL-LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP  720 (810)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHH-GGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhCChHHHHHHHhccCcHHHHHH-HhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC
Confidence            9999999999999999998744799999999 678888899999999999999866677778888 99999999999988


Q ss_pred             CCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          375 CSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       375 ~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                       +...|+.|.|+|..+..+.+|..
T Consensus       721 -d~~vq~~A~~aL~NL~~~s~e~~  743 (810)
T 3now_A          721 -SPAVQHRGIVIILNMINAGEEIA  743 (810)
T ss_dssp             -SHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             -CHHHHHHHHHHHHHHHhCCHHHH
Confidence             99999999999999987555543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=4.3e-29  Score=253.55  Aligned_cols=287  Identities=11%  Similarity=0.193  Sum_probs=244.7

Q ss_pred             hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      ..++..|+++|... ++++.|.+|++.|.+++..++.++..+++.|+||.|+.+|.+++        .++++.|++ +|.
T Consensus       118 ~G~ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~--------~~v~e~A~~-aL~  187 (529)
T 3tpo_A          118 AGLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH--------AHISEQAVW-ALG  187 (529)
T ss_dssp             TTHHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHH
T ss_pred             CCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--------HHHHHHHHH-HHH
Confidence            47888999988654 45889999999999999999999999999999999999999887        459999999 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhhcCC-----HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cC
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFEHGS-----CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HH  245 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~-----~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~  245 (401)
                      +|+.++++.+..+.+.|++++|+.+|..++     ...+..++++|.++ +...   .....+....|++|.|+.+| ++
T Consensus       188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl-~~~~---~~~~~~~~~~~~lp~L~~LL~~~  263 (529)
T 3tpo_A          188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL-CRNK---NPAPPLDAVEQILPTLVRLLHHN  263 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH-HCCC---TTCCCHHHHHHHHHHHHHHTTSS
T ss_pred             HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH-Hhcc---cchhhHHHHhhHHHHHHHHhcCC
Confidence            999888788888889999999999997654     34678899999999 6554   33333333358999999999 56


Q ss_pred             CchhHHHHHHHHHHhcCCCch-hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHHhCCCcHHH
Q 015728          246 NSEASDAGVRAFSALCSTETN-RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALINNPNGVYA  323 (401)
Q Consensus       246 ~~~~~~~a~~aL~~Ls~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~g~i~~  323 (401)
                      +.+++..|+++|.+|+..+++ ...+++.|++|.|+++|.   +.+..++..|+.+|.+++...+ .+..++ +.|+++.
T Consensus       264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~  339 (529)
T 3tpo_A          264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAV  339 (529)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGG
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc---CCChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHH
Confidence            777999999999999976665 555678999999999999   6788999999999999997654 555554 8899999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh-hHHhh
Q 015728          324 LVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK-WAEEL  398 (401)
Q Consensus       324 Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~-~~e~~  398 (401)
                      |+. +++++++.+++.|+++|.+|+.++++.+..+++.|+++.|+.+++++ +..+|+.|+|+|..+... .+|..
T Consensus       340 L~~-LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~  413 (529)
T 3tpo_A          340 FPS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQI  413 (529)
T ss_dssp             HHH-HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHH-HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHH
Confidence            999 67888889999999999999999888888999999999999999998 899999999999988763 34433

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=2e-29  Score=254.79  Aligned_cols=284  Identities=16%  Similarity=0.188  Sum_probs=240.2

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCc-hhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESP-PASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      +.-+++.|.  +++.+.|..|+..+|++.+... ...+.++++|+||.||.+|++.+.       +++|.+|+| +|.||
T Consensus        59 i~~~v~~l~--s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~-------~~lq~~Aa~-aL~ni  128 (510)
T 3ul1_B           59 VEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-------SPIQFESAW-ALTNI  128 (510)
T ss_dssp             HHHHHHHHT--SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC-------HHHHHHHHH-HHHHH
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC-------HHHHHHHHH-HHHHH
Confidence            344444454  3578899999999999886543 246789999999999999976553       569999999 99999


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CC-----c
Q 015728          174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HN-----S  247 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~-----~  247 (401)
                      +.++++.+..++++|+||.|+.+|++++.++++.|+++|.+| +.++  ++++..+... |++++|+.+|. .+     .
T Consensus       129 as~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nL-a~d~--~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~  204 (510)
T 3ul1_B          129 ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI-AGDG--SAFRDLVIKH-GAIDPLLALLAVPDLSTLAC  204 (510)
T ss_dssp             HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-TCHHHHHHHTCSSCGGGSCH
T ss_pred             hcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH-HhCC--HHHHHHHHHc-CChHHHHHHHHhccchhhhH
Confidence            888777777777999999999999999999999999999999 7765  3778888775 88999999994 22     2


Q ss_pred             hhHHHHHHHHHHhcCCCchhHHHH-hcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHH
Q 015728          248 EASDAGVRAFSALCSTETNRKTLV-QEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVK  326 (401)
Q Consensus       248 ~~~~~a~~aL~~Ls~~~~n~~~iv-~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~  326 (401)
                      ...+.++++|.+++.+..+...+. ..|++|.|+++|.   +.+.+++..|+++|.+|+..+.++..++.+.|+++.|++
T Consensus       205 ~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~---~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~  281 (510)
T 3ul1_B          205 GYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK  281 (510)
T ss_dssp             HHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhh
Confidence            368899999999998776655554 4789999999999   688899999999999999887777666669999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          327 MVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       327 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                       ++++++..++..++++|.+|+..++..+..+++.|+++.|+.+|+++ ++..|+.|+|+|..+....++.
T Consensus       282 -lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~  350 (510)
T 3ul1_B          282 -LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ  350 (510)
T ss_dssp             -HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHH
T ss_pred             -hhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHH
Confidence             67788889999999999999999888888999999999999999887 8999999999999998644443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=4e-29  Score=240.00  Aligned_cols=244  Identities=14%  Similarity=0.125  Sum_probs=207.3

Q ss_pred             hhHHHHHHhhhhh---------hcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHH
Q 015728           93 DSLSTLKHSLQSH---------EATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFV  162 (401)
Q Consensus        93 ~~~~~l~~~l~~~---------~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~  162 (401)
                      .++..|..+|...         ..+++.|++|++.|++++..++.+|..+.. .|+||.||.+|++++        ++++
T Consensus        73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~--------~~v~  144 (354)
T 3nmw_A           73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES--------EDLQ  144 (354)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSC--------HHHH
T ss_pred             CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCC--------HHHH
Confidence            5677777777532         134678999999999999999889998876 466999999999876        4599


Q ss_pred             HHHHHHHHHhhcCC-chhhhhhcccCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH
Q 015728          163 EESLSCVQKLLLVG-ETESLNLLNEESKMESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII  240 (401)
Q Consensus       163 ~~a~~~~L~~l~~~-~~~~~~~v~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv  240 (401)
                      +.|++ +|.+|+.. +++++..+.+.|+|++|+++| ++++.+.++.|+.+|++| +...  ++++..|+...|+|++|+
T Consensus       145 ~~A~~-aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL-s~~~--~~nk~~i~~~~Gai~~Lv  220 (354)
T 3nmw_A          145 QVIAS-VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL-SAHC--TENKADICAVDGALAFLV  220 (354)
T ss_dssp             HHHHH-HHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHSTTHHHHHH
T ss_pred             HHHHH-HHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH-HccC--hhhhHHHHHhcCcHHHHH
Confidence            99999 99999975 455677777999999999975 667889999999999999 7633  278888883359999999


Q ss_pred             HHcc-CCc----hhHHHHHHHHHHhcC----CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHhh
Q 015728          241 SLVH-HNS----EASDAGVRAFSALCS----TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IENS  310 (401)
Q Consensus       241 ~lL~-~~~----~~~~~a~~aL~~Ls~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~~  310 (401)
                      .+|+ ++.    ++++.|+++|+||+.    +++++..+++.|+||+|+++|.   +++..+++.|+++|.+|+. ++++
T Consensus       221 ~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nLa~~~~~~  297 (354)
T 3nmw_A          221 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK---SHSLTIVSNACGTLWNLSARNPKD  297 (354)
T ss_dssp             HHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc---CCChHHHHHHHHHHHHHhCCCHHH
Confidence            9994 332    489999999999995    8889999999999999999999   6788899999999999994 6888


Q ss_pred             HHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHH
Q 015728          311 KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQ  353 (401)
Q Consensus       311 ~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~  353 (401)
                      +..++ +.|+|+.|++ ++++++..+++.|+.+|.+|+.+.++
T Consensus       298 ~~~i~-~~G~i~~Lv~-LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          298 QEALW-DMGAVSMLKN-LIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHH-HTTHHHHHHT-TTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHH-HCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            88886 8899999999 67888889999999999999988653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=2.9e-28  Score=247.40  Aligned_cols=285  Identities=16%  Similarity=0.195  Sum_probs=241.5

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCc-hhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESP-PASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      .+..+++.+.  +++.+.|..|+..+|++.+... ...+.+++.|+||.||.+|...+.       ++++.+|+| +|.+
T Consensus        77 ~l~~lv~~l~--s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-------~~~q~~Aa~-aL~n  146 (529)
T 3tpo_A           77 SVEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-------SPIQFESAW-ALTN  146 (529)
T ss_dssp             CHHHHHHHHT--SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-------HHHHHHHHH-HHHH
T ss_pred             HHHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-------HHHHHHHHH-HHHH
Confidence            3444544444  3578899999999999875543 357788999999999999976553       679999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CC-----
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HN-----  246 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~-----  246 (401)
                      |+.++++....+++.|+||.|+.+|.+++.++++.|+++|.+| +.++  ++++..+... |++++|+.+|. .+     
T Consensus       147 ia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nL-a~~~--~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~  222 (529)
T 3tpo_A          147 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI-AGAG--SAFRDLVIKH-GAIDPLLALLAVPDLSTLA  222 (529)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-TCHHHHHHTTCSSCGGGSC
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH-hccC--HHHHHHHHHc-CCcHHHHHHHhccchhHhH
Confidence            9988877766777999999999999999999999999999999 7765  3888888876 88999999994 22     


Q ss_pred             chhHHHHHHHHHHhcCCCchhHHH-HhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHH
Q 015728          247 SEASDAGVRAFSALCSTETNRKTL-VQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALV  325 (401)
Q Consensus       247 ~~~~~~a~~aL~~Ls~~~~n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv  325 (401)
                      ....+.++++|.+++.+..+...+ ...|++|.|+++|.   +++.+++..|+++|.+|+..++.+..++.+.|+++.|+
T Consensus       223 ~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv  299 (529)
T 3tpo_A          223 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV  299 (529)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc---CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHH
Confidence            236889999999999877665554 44789999999999   68889999999999999988777766656999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          326 KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      + ++++++..++..|+++|.+|+.+++..+..+++.|+++.|+.+|+++ ++..|+.|+|+|..+....++.
T Consensus       300 ~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~  369 (529)
T 3tpo_A          300 K-LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQ  369 (529)
T ss_dssp             H-HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHH
T ss_pred             H-HhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHH
Confidence            9 67788889999999999999999888888999999999999999887 8999999999999998755443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.96  E-value=1.3e-28  Score=245.57  Aligned_cols=277  Identities=10%  Similarity=0.054  Sum_probs=226.3

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhc-cCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLF-GKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      ..+..|+++|++  ++++.|..|++.|++++..++.+|..|+++|+||+|+.+|+ +++        +++++.|++ +|+
T Consensus        44 g~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~--------~~~~~~a~~-aL~  112 (457)
T 1xm9_A           44 GGICKLVDLLRS--PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN--------AEIQKQLTG-LLW  112 (457)
T ss_dssp             THHHHHHHHTTS--SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCC--------HHHHHHHHH-HHH
T ss_pred             CCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCC--------HHHHHHHHH-HHH
Confidence            567888888874  56789999999999999998999999999999999999998 655        569999999 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhh--------cC--------CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHH
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFE--------HG--------SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL  235 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~--------~~--------~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~  235 (401)
                      +|+.++ +.+..+.+ |+||+|+.+|.        ++        +.+++.+|+++|.+| +..+   +++..|.+..|+
T Consensus       113 nLa~~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL-s~~~---~~~~~i~~~~g~  186 (457)
T 1xm9_A          113 NLSSTD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL-SSAD---AGRQTMRNYSGL  186 (457)
T ss_dssp             HHHTSS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH-TTSH---HHHHHHTTSTTH
T ss_pred             HHhcCH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH-ccCH---HHHHHHHHcCCC
Confidence            999874 45555557 99999999993        33        334555999999999 7654   888888875488


Q ss_pred             HHHHHHHccC-------C--------------------------------------------------------------
Q 015728          236 LREIISLVHH-------N--------------------------------------------------------------  246 (401)
Q Consensus       236 i~~Lv~lL~~-------~--------------------------------------------------------------  246 (401)
                      +++|+.+|+.       +                                                              
T Consensus       187 i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (457)
T 1xm9_A          187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL  266 (457)
T ss_dssp             HHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------C
T ss_pred             HHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCc
Confidence            8999887731       1                                                              


Q ss_pred             -------------------------------chhHHHHHHHHHHhcCCCch------hHHHHhcCcHHHHHHHHHhhccc
Q 015728          247 -------------------------------SEASDAGVRAFSALCSTETN------RKTLVQEGAINGLIAYISNALTR  289 (401)
Q Consensus       247 -------------------------------~~~~~~a~~aL~~Ls~~~~n------~~~iv~~G~v~~Lv~lL~~~~~~  289 (401)
                                                     +..++.|+++|.||+.....      +..+.+.|++|+|+++|.   ++
T Consensus       267 ~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~---~~  343 (457)
T 1xm9_A          267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ---SG  343 (457)
T ss_dssp             CCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT---CS
T ss_pred             cccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh---CC
Confidence                                           22455678999999865432      223346899999999999   67


Q ss_pred             cchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCCh------hHHHHHHHHHHHHhcCCHHHHHHHHHcCc
Q 015728          290 ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDH------EGSENAINSLMMICCDSLQAREEAICAGV  363 (401)
Q Consensus       290 ~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  363 (401)
                      +.+++..|+++|.+|+.++.++..+.  .|+|++|++ ++..+++      ++...++.+|.++..++++....+.+.|+
T Consensus       344 ~~~v~~~A~~aL~nls~~~~~~~~i~--~~~i~~Lv~-lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~  420 (457)
T 1xm9_A          344 NSDVVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTR-LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM  420 (457)
T ss_dssp             CHHHHHHHHHHHHHHHTSGGGHHHHH--HHTHHHHHH-TTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHH
T ss_pred             CHhHHHHHHHHHHHHhcCHHHHHHHH--HhhhHHHHH-hccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence            88999999999999999998888774  389999999 5665532      46678999999999888888889999999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          364 LTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       364 v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +++|+.++.++.++.++++|.++|..+-.
T Consensus       421 l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          421 LNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            99999999887578999999999987654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=1.1e-28  Score=257.08  Aligned_cols=286  Identities=11%  Similarity=0.093  Sum_probs=234.1

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHH-hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLI-QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~-~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      +.+..+.+.|.+...+.+.+..|++.|..++...+ .|+.++ +.|+||.||.+|++++..        ++..|++ +|.
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~-vk~~lv~d~g~Ip~LV~LL~s~d~~--------i~~~al~-~L~  446 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE-CKEKLIEDKASIHALMDLARGGNQS--------CLYGVVT-TFV  446 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH-HHHHHHHCHHHHHHHHHHHHTTCGG--------GHHHHHH-HHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHccchHHHHHHHhCCCChH--------HHHHHHH-HHH
Confidence            45677888887654467899999999999998765 555666 589999999999987644        9999999 999


Q ss_pred             hhcCCchh-----------------------------hh---hhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 015728          172 LLLVGETE-----------------------------SL---NLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSS  219 (401)
Q Consensus       172 ~l~~~~~~-----------------------------~~---~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~  219 (401)
                      ||+.+.+.                             .+   +.+.++|+||.|+.+|+++++.+|+.|+++|.|| +.+
T Consensus       447 NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL-A~d  525 (810)
T 3now_A          447 NLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV-CGL  525 (810)
T ss_dssp             HHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH-HTS
T ss_pred             HHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH-cCC
Confidence            99975421                             11   4556889999999999999999999999999999 876


Q ss_pred             cchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHH---HhcCcHHHHHHHHHhhccccchHHH
Q 015728          220 HETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTL---VQEGAINGLIAYISNALTRERSLAA  295 (401)
Q Consensus       220 ~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~i---v~~G~v~~Lv~lL~~~~~~~~~~~~  295 (401)
                      +   +++..+.+. |++|+|+.+| +++...++.|+++|.||+.+.++...+   ...|+||+|+++|.+  +.+...+.
T Consensus       526 ~---~~r~~Vv~~-Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~--~~~~l~~~  599 (810)
T 3now_A          526 K---ELRGKVVQE-GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ--DCTALENF  599 (810)
T ss_dssp             H---HHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST--TSCHHHHH
T ss_pred             H---HHHHHHHHC-CCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC--CCcHHHHH
Confidence            5   899999886 8999999999 556679999999999999655443322   124699999999983  33444556


Q ss_pred             HHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHH-cCcHHHHHHHhhc
Q 015728          296 IAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAIC-AGVLTQLLLLLQS  373 (401)
Q Consensus       296 ~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~L~~ll~~  373 (401)
                      .|+++|.+|+.. ++++..++ ++|+++.|+.+ +.++++.+++.|+++|+||+.++ +.+..++. .|+++.|+.++++
T Consensus       600 eAl~AL~NLa~~~d~~~~~Ii-~aG~l~~Lv~L-L~s~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~s  676 (810)
T 3now_A          600 ESLMALTNLASMNESVRQRII-KEQGVSKIEYY-LMEDHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCED  676 (810)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHH-HHSCCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGGC
T ss_pred             HHHHHHHHHhcCCHHHHHHHH-HcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhcC
Confidence            899999999987 56777776 78999999994 56677789999999999999874 56666775 7999999999988


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728          374 QCSNRTKTKARMLLKLLRSKWAEELK  399 (401)
Q Consensus       374 ~~~~~~~~~A~~~L~~l~~~~~e~~~  399 (401)
                      + +..+|+.|+|+|..++..+++..+
T Consensus       677 ~-d~~vq~~Aa~ALanLt~~s~~~~~  701 (810)
T 3now_A          677 E-DEETATACAGALAIITSVSVKCCE  701 (810)
T ss_dssp             S-SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             C-CHHHHHHHHHHHHHHhCCCHHHHH
Confidence            7 899999999999999986666544

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=1.2e-27  Score=241.78  Aligned_cols=279  Identities=15%  Similarity=0.183  Sum_probs=222.9

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhc-CchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRE-SPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      ..+..|+++|++  ++.+.|..|+..|++++.. ++.||..|+++|+||+||.+|+++..       .++++.|++ +|+
T Consensus        90 G~Ip~LV~LL~s--~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~-------~~~~e~aa~-aL~  159 (584)
T 3l6x_A           90 KGIPVLVGLLDH--PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-------MDLTEVITG-TLW  159 (584)
T ss_dssp             THHHHHHHGGGC--SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCS-------HHHHHHHHH-HHH
T ss_pred             CCcHHHHHHHCC--CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCC-------HHHHHHHHH-HHH
Confidence            567788888874  4688999999999999985 68899999999999999999987432       458999999 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhh------------------cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccch
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFE------------------HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD  233 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~------------------~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~  233 (401)
                      +|+.+++.+..++ + ++|+.|+.+|.                  ..+.+++++|+.+|.|| +..+  +++|..|.+.+
T Consensus       160 nLS~~~~~k~~I~-~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NL-s~~~--~~~R~~i~~~~  234 (584)
T 3l6x_A          160 NLSSHDSIKMEIV-D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNV-SSER--SEARRKLRECD  234 (584)
T ss_dssp             HHTTSGGGHHHHH-H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHH-TSSC--HHHHHHHHHST
T ss_pred             HHhCCchhhHHHH-h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHH-hcCC--HHHHHHHHHcC
Confidence            9998665544444 4 57999999872                  12468999999999999 7765  25677777766


Q ss_pred             HHHHHHHHHcc-------CC------------------------------------------------------------
Q 015728          234 RLLREIISLVH-------HN------------------------------------------------------------  246 (401)
Q Consensus       234 g~i~~Lv~lL~-------~~------------------------------------------------------------  246 (401)
                      |++++||.+|+       .+                                                            
T Consensus       235 Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll  314 (584)
T 3l6x_A          235 GLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI  314 (584)
T ss_dssp             THHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHH
Confidence            77777777652       11                                                            


Q ss_pred             --------chhHHHHHHHHHHhcCCC-----chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728          247 --------SEASDAGVRAFSALCSTE-----TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA  313 (401)
Q Consensus       247 --------~~~~~~a~~aL~~Ls~~~-----~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~  313 (401)
                              ..++++|+++|.||+...     .++..+.+.|++|.|++||.   +++..+++.|+++|.+|+.+..++..
T Consensus       315 ~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~---s~~~~v~~~A~~aL~nLs~~~~~~~~  391 (584)
T 3l6x_A          315 SLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT---NEHERVVKAASGALRNLAVDARNKEL  391 (584)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc---CCCHHHHHHHHHHHHHHhCChhHHHH
Confidence                    224455666666665432     13334456799999999999   67889999999999999999989887


Q ss_pred             HHhCCCcHHHHHHHHHhcC--------ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC-CCHHHHHHHH
Q 015728          314 LINNPNGVYALVKMVFRVS--------DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ-CSNRTKTKAR  384 (401)
Q Consensus       314 ~~~~~g~i~~Lv~~l~~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~-~~~~~~~~A~  384 (401)
                      |  ..|+||.||+ ++..+        +......|+++|.||+..+++.++.+.+.|+|+.|+.+++++ .++..++.|+
T Consensus       392 I--~~g~ip~LV~-LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa  468 (584)
T 3l6x_A          392 I--GKHAIPNLVK-NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA  468 (584)
T ss_dssp             H--HHHHHHHHHH-TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred             H--HhCCHHHHHH-HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence            7  3589999999 45554        345678899999999988888999999999999999999875 4789999999


Q ss_pred             HHHHHHHH
Q 015728          385 MLLKLLRS  392 (401)
Q Consensus       385 ~~L~~l~~  392 (401)
                      ++|..+..
T Consensus       469 ~vL~nl~~  476 (584)
T 3l6x_A          469 LVLQTIWG  476 (584)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999876

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.95  E-value=8.9e-27  Score=236.20  Aligned_cols=287  Identities=14%  Similarity=0.120  Sum_probs=245.5

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCc-hhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESP-PASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      +.+..+.+.|.+  ++++.|..|+..|++++.... .++..+++.|+||.|+.+|.+++.       +.+++.|++ +|.
T Consensus        74 ~~l~~lv~~L~s--~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-------~~v~~~A~~-~L~  143 (528)
T 4b8j_A           74 ESLPAMIGGVYS--DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-------PQLQFEAAW-ALT  143 (528)
T ss_dssp             -CHHHHHHHHTS--SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-------HHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-------HHHHHHHHH-HHH
Confidence            556777777753  468899999999999987765 678889999999999999987652       459999999 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchh
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEA  249 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~  249 (401)
                      +++.++++.+..+.+.|+|+.|+.+|++++..+++.|+++|.+| +.++  +.++..+... |++++|+.+| + .+..+
T Consensus       144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l-~~~~--~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v  219 (528)
T 4b8j_A          144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNV-AGDS--PKCRDLVLAN-GALLPLLAQLNEHTKLSM  219 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-HHTC--HHHHHHHHHT-TCHHHHHHTCCTTCCHHH
T ss_pred             HHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHH-hCCC--hhhHHHHHHC-CcHHHHHHHHhcCCCHHH
Confidence            99987666766777889999999999999999999999999999 7654  2778888775 8899999999 4 35679


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728          250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      +..|+++|.+|+....+....+..|++|.|+++|.   +.+..++..|+++|.+|+.....+...+.+.|+++.|++ ++
T Consensus       220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~-lL  295 (528)
T 4b8j_A          220 LRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH---SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LL  295 (528)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHH-HT
T ss_pred             HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHH-HH
Confidence            99999999999987666666667999999999998   678899999999999999887776544458899999999 67


Q ss_pred             hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      .++++.++..|+++|.+|+.+++.....+++.|+++.|+.+|+++.++.+++.|.++|..+....++.
T Consensus       296 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~  363 (528)
T 4b8j_A          296 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQ  363 (528)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHH
Confidence            77788999999999999999888888899999999999999987658899999999999998744443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=6.7e-27  Score=213.21  Aligned_cols=240  Identities=18%  Similarity=0.241  Sum_probs=212.8

Q ss_pred             CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 015728          137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVII  216 (401)
Q Consensus       137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~  216 (401)
                      |+||.|+.+|.+++        ++++..|++ +|.+++.++++.+..+.+.|+++.|+.+|++++.+++..|+++|.+| 
T Consensus         2 ~~i~~L~~~L~~~~--------~~~~~~a~~-~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l-   71 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD--------SETQKEAAR-DLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI-   71 (252)
T ss_dssp             CHHHHHHHHTTCSC--------HHHHHHHHH-HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-
T ss_pred             CcHHHHHHHHcCCC--------HHHHHHHHH-HHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence            67999999998876        459999999 99999877766666666899999999999999999999999999999 


Q ss_pred             hcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728          217 SSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLA  294 (401)
Q Consensus       217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~  294 (401)
                      +..+  ++++..+... |+++.|+.+|+ ++.+++..|+++|.+|+ .+++++..+++.|+++.|+++|.   +++..++
T Consensus        72 ~~~~--~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~  145 (252)
T 4hxt_A           72 ASGP--DEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQ  145 (252)
T ss_dssp             TTSC--HHHHHHHHHT-THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHH
T ss_pred             HcCC--hHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHH
Confidence            7663  2888888875 88999999994 56779999999999999 67789999999999999999999   6788999


Q ss_pred             HHHHHHHHHHhCCHhh-HHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhc
Q 015728          295 AIAMARIEQLLAIENS-KDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQS  373 (401)
Q Consensus       295 ~~a~~~L~~La~~~~~-~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~  373 (401)
                      ..|+++|.+|+...+. +..+. +.|+++.|++ +++++++..+..|+.+|.+|+..+++.+..+.+.|+++.|+.++++
T Consensus       146 ~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~  223 (252)
T 4hxt_A          146 KEAARALANIASGPDEAIKAIV-DAGGVEVLVK-LLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS  223 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH-HCcCHHHHHH-HHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence            9999999999986544 45664 7899999999 6778888999999999999999888888899999999999999988


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhH
Q 015728          374 QCSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       374 ~~~~~~~~~A~~~L~~l~~~~~  395 (401)
                      + ++.+|+.|.++|..+..+.+
T Consensus       224 ~-~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          224 T-DSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             S-CHHHHHHHHHHHHHHHHTCB
T ss_pred             C-cHHHHHHHHHHHHHHHcCCC
Confidence            7 89999999999999998543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.95  E-value=2.8e-26  Score=232.57  Aligned_cols=286  Identities=12%  Similarity=0.178  Sum_probs=242.8

Q ss_pred             hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      ...+..|.++|.+. +++..|..|++.|.+++..++.++..+++.|+||.|+.+|.+++        ..+++.|++ +|.
T Consensus       116 ~g~v~~Lv~lL~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~v~~~a~~-aL~  185 (528)
T 4b8j_A          116 SGVVPRFVQFLTRE-DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSS--------DDVREQAVW-ALG  185 (528)
T ss_dssp             TTCHHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHH
T ss_pred             CCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCC--------HHHHHHHHH-HHH
Confidence            36788888888644 23789999999999999999999999999999999999998865        459999999 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchh
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLF-EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEA  249 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~  249 (401)
                      +|+.+.+..+..+.+.|+++.|+.+| ++.+..++..++++|.+| +...+  .....+ . .|+++.|+.+| +++..+
T Consensus       186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L-~~~~~--~~~~~~-~-~~~l~~L~~lL~~~~~~v  260 (528)
T 4b8j_A          186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF-CRGKP--QPSFEQ-T-RPALPALARLIHSNDEEV  260 (528)
T ss_dssp             HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH-HCSSS--CCCHHH-H-TTHHHHHHHHTTCCCHHH
T ss_pred             HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCCC--CCcHHH-H-HHHHHHHHHHHCCCCHHH
Confidence            99977677677777889999999999 667889999999999999 65531  222222 2 48899999999 456779


Q ss_pred             HHHHHHHHHHhcCCCchh-HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHH
Q 015728          250 SDAGVRAFSALCSTETNR-KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKM  327 (401)
Q Consensus       250 ~~~a~~aL~~Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~  327 (401)
                      +..|+++|.+|+...+++ ..+++.|++|.|+.+|.   +++..++..|+.+|.+|+.. +.....++ +.|+++.|+. 
T Consensus       261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~-  335 (528)
T 4b8j_A          261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---HPSPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLS-  335 (528)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---CCChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHH-
Confidence            999999999999776654 56778999999999999   67789999999999999985 44555565 8999999999 


Q ss_pred             HHhcC-ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh-hHHhh
Q 015728          328 VFRVS-DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK-WAEEL  398 (401)
Q Consensus       328 l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~-~~e~~  398 (401)
                      +++++ ++.++..|+++|.+|+..+++....+++.|+++.|+.+|+++ ++.+|+.|+++|..+... .++..
T Consensus       336 lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~  407 (528)
T 4b8j_A          336 LLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQI  407 (528)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHH
Confidence            56666 789999999999999988888888999999999999999988 999999999999999985 35543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.7e-26  Score=209.97  Aligned_cols=238  Identities=16%  Similarity=0.209  Sum_probs=206.2

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      ....+.++.+|.+++..        ++..|++ .|.++...++..+..+.+.|+|+.|+.+|++++.+++..|+++|.++
T Consensus        11 ~~~~~~~~~~L~s~~~~--------~~~~a~~-~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   81 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQ--------EQLSATR-KFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI   81 (252)
T ss_dssp             TCSHHHHHHHHHSSCSS--------HHHHHHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHcCCCHH--------HHHHHHH-HHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            34689999999998865        9999999 77544333445555666889999999999999999999999999999


Q ss_pred             HhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchh-HHHHhcCcHHHHHHHHHhhccccchH
Q 015728          216 ISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNR-KTLVQEGAINGLIAYISNALTRERSL  293 (401)
Q Consensus       216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~  293 (401)
                       +..+  ++++..+... |+++.|+.+| +++..++..|+++|.||+.+++++ ..+++.|++|.|+++|.   +++..+
T Consensus        82 -~~~~--~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v  154 (252)
T 4db8_A           82 -ASGG--NEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQI  154 (252)
T ss_dssp             -TTSC--HHHHHHHHHT-THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHH
T ss_pred             -hcCC--HHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---CCCHHH
Confidence             7643  2888888876 8899999999 456779999999999999999988 88899999999999999   678899


Q ss_pred             HHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh
Q 015728          294 AAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQ  372 (401)
Q Consensus       294 ~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~  372 (401)
                      +..|+++|.+|+..+ +.+..+. +.|+++.|++ +++++++..++.|+.+|.+|+..+++.+..+.+.|+++.|+.+++
T Consensus       155 ~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~  232 (252)
T 4db8_A          155 LQEALWALSNIASGGNEQIQAVI-DAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS  232 (252)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHH-HTTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence            999999999999854 5555554 7899999999 677888899999999999999888888889999999999999998


Q ss_pred             cCCCHHHHHHHHHHHHHHHH
Q 015728          373 SQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       373 ~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ++ ++.+|+.|.++|..|.+
T Consensus       233 ~~-~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          233 HE-NEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             CS-SSHHHHTHHHHHHTTC-
T ss_pred             CC-CHHHHHHHHHHHHHHhc
Confidence            88 88999999999998765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.94  E-value=4.5e-25  Score=218.30  Aligned_cols=288  Identities=12%  Similarity=0.164  Sum_probs=242.6

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..|.+.|.+. ++++.|..|++.|.+++..++.++..+++.|++|.|+.+|++++        +++++.|++ +|.+
T Consensus        64 ~~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--------~~vr~~a~~-~L~~  133 (450)
T 2jdq_A           64 GVVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF--------EDVQEQAVW-ALGN  133 (450)
T ss_dssp             THHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHH
T ss_pred             CcHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCC--------HHHHHHHHH-HHHH
Confidence            5678888877643 35789999999999999988888888889999999999998875        559999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~  250 (401)
                      ++.+....+..+.+.|+++.|+.+|++ .+.+++..|+++|.+| +.... +..+..+.  .|+++.|+.+++ ++..++
T Consensus       134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l-~~~~~-~~~~~~~~--~~~l~~L~~~l~~~~~~v~  209 (450)
T 2jdq_A          134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL-CRGKS-PPPEFAKV--SPCLNVLSWLLFVSDTDVL  209 (450)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSS-SCCCGGGT--GGGHHHHHHHTTCCCHHHH
T ss_pred             HccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH-hCCCC-CCCCHHHH--HHHHHHHHHHHccCCHHHH
Confidence            998776677777688999999999985 6889999999999999 64320 13333333  488999999994 567799


Q ss_pred             HHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728          251 DAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      ..++++|.+|+... +++..+++.|++|.|+++|.   +.+..++..|+.+|.+|+...+.....+.+.|+++.|++ ++
T Consensus       210 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll  285 (450)
T 2jdq_A          210 ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM---HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH-LL  285 (450)
T ss_dssp             HHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH-HT
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC---CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH-HH
Confidence            99999999999754 57778889999999999998   678899999999999999876554443348899999999 57


Q ss_pred             hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh-hHHhhc
Q 015728          330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK-WAEELK  399 (401)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~-~~e~~~  399 (401)
                      +++++..++.|+++|.+|+.++++..+.+++.|+++.|+.+++++ ++.+|+.|.++|..+... .++..+
T Consensus       286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~  355 (450)
T 2jdq_A          286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIK  355 (450)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            777889999999999999987777777889999999999999988 899999999999999875 455443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.94  E-value=1.7e-25  Score=227.02  Aligned_cols=286  Identities=18%  Similarity=0.203  Sum_probs=241.9

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcC-chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES-PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      +.+..+.+.|.+  ++++.|..|+..|++++... ..++..+++.|++|.|+.+|.+++.       +.++..|++ +|.
T Consensus        87 ~~i~~lv~~L~s--~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-------~~v~~~A~~-~L~  156 (530)
T 1wa5_B           87 QELPQMTQQLNS--DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-------EMLQLEAAW-ALT  156 (530)
T ss_dssp             CCHHHHHHHHSC--SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-------HHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-------HHHHHHHHH-HHH
Confidence            346666666754  36889999999999998753 4467788899999999999988632       569999999 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS  250 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~  250 (401)
                      +++.++++.+..+.+.|+++.|+.+|++++.++++.|+++|.+| +.++  ++++..+... |+++.|+.+|. .+..++
T Consensus       157 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l-~~~~--~~~~~~~~~~-~~l~~L~~ll~~~~~~v~  232 (530)
T 1wa5_B          157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV-AGDS--TDYRDYVLQC-NAMEPILGLFNSNKPSLI  232 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-TCHHHHHHGGGSCCHHHH
T ss_pred             HHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH-hCCC--ccchHHHHHc-CcHHHHHHHhccCCHHHH
Confidence            99977666666666889999999999999999999999999999 7653  2677777765 88999999995 566799


Q ss_pred             HHHHHHHHHhcCCC-chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHH
Q 015728          251 DAGVRAFSALCSTE-TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMV  328 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~-~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l  328 (401)
                      ..|+++|.+|+... .+.......|++|.|+++|.   +++..++..|+++|.+|+.. ++....++ +.|+++.|++ +
T Consensus       233 ~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~-l  307 (530)
T 1wa5_B          233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVE-L  307 (530)
T ss_dssp             HHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHH-G
T ss_pred             HHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHH-H
Confidence            99999999999765 55666677899999999998   67889999999999999976 44556665 7899999999 5


Q ss_pred             HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          329 FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       329 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      +.+.+..++..|+.+|.+|+.+++...+.+++.|+++.|+.+|+++ .+..|+.|.++|..+....++..
T Consensus       308 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~  376 (530)
T 1wa5_B          308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQI  376 (530)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHH
Confidence            7777888999999999999998888888889999999999999988 89999999999999987555543

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.94  E-value=5.1e-25  Score=223.45  Aligned_cols=281  Identities=13%  Similarity=0.145  Sum_probs=239.3

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..|.+.|.+. +++..|..|++.|.+++..++.++..+++.|++|.|+.+|.+++        +++++.|++ +|.+
T Consensus       130 g~i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~--------~~vr~~A~~-aL~~  199 (530)
T 1wa5_B          130 GVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS--------VEVKEQAIW-ALGN  199 (530)
T ss_dssp             TCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCC--------HHHHHHHHH-HHHH
T ss_pred             CCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCC--------HHHHHHHHH-HHHH
Confidence            5677888877643 35789999999999999999889999999999999999999865        559999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASD  251 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~  251 (401)
                      |+.+.+..+..+.+.|+++.|+.+|.+.+.+++..|+++|.+| +....  ........ .|+++.|+.+|. ++..++.
T Consensus       200 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L-~~~~~--~~~~~~~~-~~~l~~L~~lL~~~d~~v~~  275 (530)
T 1wa5_B          200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL-CRGKK--PQPDWSVV-SQALPTLAKLIYSMDTETLV  275 (530)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH-HCCSS--SCCCHHHH-GGGHHHHHHHTTCCCHHHHH
T ss_pred             HhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH-hCCCC--CCCcHHHH-HhHHHHHHHHHcCCCHHHHH
Confidence            9977666777766889999999999998999999999999999 64420  11222223 488999999994 5667999


Q ss_pred             HHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHH
Q 015728          252 AGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       252 ~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      .|+++|.+|+.. ++.+..+++.|++|.|+.+|.   +.+..++..|+.+|.+|+... .....+. +.|+++.|+. ++
T Consensus       276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~-lL  350 (530)
T 1wa5_B          276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS---HESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRL-LL  350 (530)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHH-HT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC---CCChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHH-HH
Confidence            999999999965 456778889999999999999   678899999999999999764 4445554 7799999999 67


Q ss_pred             hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728          330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  393 (401)
                      .+++...++.|+++|.+|+..+++....+++.|+++.|+.+|+++ ++.+|+.|.++|..+...
T Consensus       351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG  413 (530)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence            777889999999999999988777777888999999999999887 899999999999999874

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=2.4e-25  Score=202.82  Aligned_cols=238  Identities=17%  Similarity=0.257  Sum_probs=207.3

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      .+..+.+.|.+.  +++.|..|+..|.+++..++.++..+.+.|+++.|+.+|++++        .++++.|++ +|.++
T Consensus         3 ~i~~L~~~L~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~v~~~a~~-~L~~l   71 (252)
T 4hxt_A            3 DVEKLVKLLTST--DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD--------SEVQKEAAR-ALANI   71 (252)
T ss_dssp             HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHHH
T ss_pred             cHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC--------HHHHHHHHH-HHHHH
Confidence            466777777644  4889999999999999999989999999999999999999876        459999999 99999


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHH
Q 015728          174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDA  252 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~  252 (401)
                      +.++++.+..+.+.|+++.|+.+|++++.+++..|+++|.+| +...  ++++..+... |+++.|+.+|+ ++..++..
T Consensus        72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l-~~~~--~~~~~~~~~~-~~i~~L~~~l~~~~~~~~~~  147 (252)
T 4hxt_A           72 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI-ASGP--DEAIKAIVDA-GGVEVLVKLLTSTDSEVQKE  147 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHH-TTSC--HHHHHHHHHT-THHHHHHHHTTCSCHHHHHH
T ss_pred             HcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH-HcCC--HHHHHHHHHC-CCHHHHHHHHcCCCHHHHHH
Confidence            987667777777899999999999999999999999999999 7433  2788888775 88999999994 56779999


Q ss_pred             HHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHh
Q 015728          253 GVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFR  330 (401)
Q Consensus       253 a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~  330 (401)
                      |+++|.+|+.. ++++..+++.|+++.|+++|.   +++..++..|+++|.+|+.. ++.+..+. +.|+++.|++ +++
T Consensus       148 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~-ll~  222 (252)
T 4hxt_A          148 AARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQK-LLT  222 (252)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHH-GGG
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC---CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHH-HHC
Confidence            99999999974 456688899999999999999   67889999999999999974 55566665 8899999999 677


Q ss_pred             cCChhHHHHHHHHHHHHhcCC
Q 015728          331 VSDHEGSENAINSLMMICCDS  351 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~  351 (401)
                      ++++..++.|+.+|.+|+...
T Consensus       223 ~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          223 STDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHHHcCC
Confidence            888899999999999998764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=9.8e-26  Score=206.20  Aligned_cols=234  Identities=16%  Similarity=0.236  Sum_probs=200.5

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      ...+.+.|.+  ++++.|..|++.|+++...++.+++.+.+.|+||.|+.+|.+++        ++++..|++ +|.+++
T Consensus        14 ~~~~~~~L~s--~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~v~~~a~~-~L~~l~   82 (252)
T 4db8_A           14 LPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--------EQILQEALW-ALSNIA   82 (252)
T ss_dssp             HHHHHHHHHS--SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--------HHHHHHHHH-HHHHHT
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--------HHHHHHHHH-HHHHHh
Confidence            4455555654  45779999999998888777789999999999999999998876        459999999 999999


Q ss_pred             CCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhh-hhhccchHHHHHHHHHcc-CCchhHHH
Q 015728          175 VGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELC-CKLGKDDRLLREIISLVH-HNSEASDA  252 (401)
Q Consensus       175 ~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~-~~i~~~~g~i~~Lv~lL~-~~~~~~~~  252 (401)
                      .++++.+..+.+.|+++.|+.+|++++.++++.|+++|.+| +...   +++ ..+... |+++.|+.+|+ ++..++..
T Consensus        83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l-~~~~---~~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~  157 (252)
T 4db8_A           83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI-ASGG---NEQIQAVIDA-GALPALVQLLSSPNEQILQE  157 (252)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH-TTSC---HHHHHHHHHT-THHHHHHHGGGCSCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh-hcCC---chHHHHHHHC-CCHHHHHHHHhCCCHHHHHH
Confidence            86666666777899999999999999999999999999999 8766   666 666665 88999999994 56679999


Q ss_pred             HHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHh
Q 015728          253 GVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMVFR  330 (401)
Q Consensus       253 a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~  330 (401)
                      |+++|.+|+. .++++..+++.|++|.|+++|.   +++..++..|+++|.+|+. +++.+..+. +.|+++.|++ +++
T Consensus       158 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~-ll~  232 (252)
T 4db8_A          158 ALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQ-LQS  232 (252)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG---CSSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHT-TTT
T ss_pred             HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHH-HhC
Confidence            9999999997 4567778889999999999999   6788999999999999995 455666665 8899999999 677


Q ss_pred             cCChhHHHHHHHHHHHHhc
Q 015728          331 VSDHEGSENAINSLMMICC  349 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~  349 (401)
                      ++++.+++.|+.+|.+|+.
T Consensus       233 ~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          233 HENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             CSSSHHHHTHHHHHHTTC-
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            7888999999999999875

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.93  E-value=6.4e-25  Score=221.85  Aligned_cols=279  Identities=12%  Similarity=0.148  Sum_probs=238.1

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..+.+.|++. ++++.+..|+..|++++... .++..+.+.|+||.|+.+|++++        +.++..|++ +|.+
T Consensus        59 ~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g~i~~L~~lL~~~~--------~~v~~~a~~-~L~~  127 (529)
T 1jdh_A           59 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPV--------DSVLFYAIT-TLHN  127 (529)
T ss_dssp             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHH
T ss_pred             chHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCc-hhHHHHHHcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHH
Confidence            4566777777643 36889999999999998764 49999999999999999998876        459999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCc-hhH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNS-EAS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~-~~~  250 (401)
                      ++.++++.+..+.+.|+++.|+.+|++++.+.+..++.+|.++ +..+  ++++..+... |+++.|+.+|+ ++. ..+
T Consensus       128 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l-a~~~--~~~~~~i~~~-~~i~~L~~ll~~~~~~~~~  203 (529)
T 1jdh_A          128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGN--QESKLIILAS-GGPQALVNIMRTYTYEKLL  203 (529)
T ss_dssp             HHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHHHHHHHHHHCCCHHHH
T ss_pred             HhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH-HhCC--HHHHHHHHHC-CCHHHHHHHHHhCChHHHH
Confidence            9976666666776889999999999999999999999999999 6543  3888888876 78999999994 333 477


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR  330 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~  330 (401)
                      ..+..+|++|+.+++++..+++.|++++|++++.   +++..++..++++|.+|+.......   ...|+++.|++ +++
T Consensus       204 ~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~-ll~  276 (529)
T 1jdh_A          204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQ-LLG  276 (529)
T ss_dssp             HHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTT---SSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh---CCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHH-HHc
Confidence            8899999999999999999999999999999999   5688899999999999997654322   23488999999 578


Q ss_pred             cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCC-CHHHHHHHHHHHHHHHHh
Q 015728          331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQC-SNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~-~~~~~~~A~~~L~~l~~~  393 (401)
                      +.++..++.|+++|.+|+.++++.+..+.+.|+++.|+.+|...+ .+.+++.|..+|..+...
T Consensus       277 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence            888899999999999999988888889999999999999998642 479999999999988753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.93  E-value=3.7e-25  Score=199.01  Aligned_cols=199  Identities=13%  Similarity=0.094  Sum_probs=169.3

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      .++.+++.|++.+...+.|..|+..|++++..++.+|..+++.|+||+||.+|++++        +++|+.|++ +|.+|
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~--------~~vq~~Aa~-aL~nL   79 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN--------EDVQRAVCG-ALRNL   79 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC--------HHHHHHHHH-HHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHHH
Confidence            366777888766444478999999999999999999999999999999999999876        459999999 99999


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc----C---
Q 015728          174 LVGETESLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH----H---  245 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~----~---  245 (401)
                      +.++++++..+.++|+||+|+.+|+ +++.+++++|+.+|++| |..+   ++|..|+.  ++|++|+.++.    +   
T Consensus        80 a~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL-S~~~---~~k~~i~~--~~i~~Lv~ll~~p~sG~~~  153 (233)
T 3tt9_A           80 VFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL-SSND---KLKNLMIT--EALLTLTENIIIPFSGWPE  153 (233)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSG---GGHHHHHH--HHHHHHCCCCCHHHHCCCG
T ss_pred             HhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcCh---hhHHHHHh--ccHHHHHHHHhccccCCcc
Confidence            9876677777779999999999998 47899999999999999 8776   88999985  56899998761    1   


Q ss_pred             ----------CchhHHHHHHHHHHhcC-CCchhHHHHhc-CcHHHHHHHHHhh---ccccchHHHHHHHHHHHHhCC
Q 015728          246 ----------NSEASDAGVRAFSALCS-TETNRKTLVQE-GAINGLIAYISNA---LTRERSLAAIAMARIEQLLAI  307 (401)
Q Consensus       246 ----------~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~-G~v~~Lv~lL~~~---~~~~~~~~~~a~~~L~~La~~  307 (401)
                                +.+++.+|+.+|+||+. ++++|..|.+. |+|+.|+.+++..   +..+...+|+|+.+|++|+..
T Consensus       154 ~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          154 GDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             GGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                      23699999999999997 55899999985 6799999999852   123567899999999999853

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=201.23  Aligned_cols=200  Identities=11%  Similarity=0.101  Sum_probs=168.7

Q ss_pred             ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 015728          138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIIS  217 (401)
Q Consensus       138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s  217 (401)
                      .+|.||.+|.+++..      .+++..|++ .+.+|+..+++.+..+.+.|+||+|+.+|++++.++|+.|+++|.+| +
T Consensus         9 ~i~~lV~lL~s~~~~------~~~q~~Aa~-~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nL-a   80 (233)
T 3tt9_A            9 TLERAVSMLEADHML------PSRISAAAT-FIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNL-V   80 (233)
T ss_dssp             CHHHHHHTCCSSCCC------HHHHHHHHH-HHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH-H
T ss_pred             cHHHHHHHhCCCCch------HHHHHHHHH-HHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence            589999999998763      358899999 88889876666777777899999999999999999999999999999 7


Q ss_pred             cccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh--c------
Q 015728          218 SSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA--L------  287 (401)
Q Consensus       218 ~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~--~------  287 (401)
                      ..+  +++|..|.+. |+||+|+.+|+  ++.+++++|+.+|+||+..+++|..|++. +||+|++++...  +      
T Consensus        81 ~~~--~~nk~~I~~~-GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~  156 (233)
T 3tt9_A           81 FED--NDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDY  156 (233)
T ss_dssp             TTC--HHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGC
T ss_pred             hCC--HHHHHHHHHc-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccc
Confidence            643  3899999987 88999999994  46679999999999999999999999975 799999976310  0      


Q ss_pred             -----cccchHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHHHhc------CChhHHHHHHHHHHHHhcC
Q 015728          288 -----TRERSLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMVFRV------SDHEGSENAINSLMMICCD  350 (401)
Q Consensus       288 -----~~~~~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l~~~------~~~~~~~~a~~~L~~l~~~  350 (401)
                           ..+.+++++|.++|++|+. ++++|..+....|.|+.||.. ++.      .+.+.+|+|+.+|.||+..
T Consensus       157 ~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~-l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHY-VRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHH-HHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHH-HHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                 1245899999999999997 569999997667889999995 443      2457899999999999874

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=223.98  Aligned_cols=278  Identities=12%  Similarity=0.144  Sum_probs=237.6

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..+.+.|++. .+.+.+..|+..|++++...+ ++..+.+.|+|+.|+.+|.+++        +.++..|++ +|.+
T Consensus        56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~--------~~v~~~A~~-aL~n  124 (644)
T 2z6h_A           56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPV--------DSVLFYAIT-TLHN  124 (644)
T ss_dssp             HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHH-HHHHHHTTTHHHHHHHHTTCSS--------HHHHHHHHH-HHHH
T ss_pred             ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCHHHHHHHHhCCC--------HHHHHHHHH-HHHH
Confidence            5577777777643 368899999999999887754 9999999999999999998876        459999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-C-chhH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-N-SEAS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~-~~~~  250 (401)
                      |+.++++.+..+.+.|+|+.|+.+|++++.+.+..++.+|.+| +...  ++++..+... |+++.|+.+|+. + ...+
T Consensus       125 L~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-a~~~--~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~  200 (644)
T 2z6h_A          125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGN--QESKLIILAS-GGPQALVNIMRTYTYEKLL  200 (644)
T ss_dssp             HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHHHHHHHHTTCCCHHHH
T ss_pred             HHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH-HhcC--cHHHHHHHHc-CChHHHHHHHHcCChHHHH
Confidence            9876556666666889999999999999998888888999999 6532  3889888886 789999999943 3 3588


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR  330 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~  330 (401)
                      ..++.+|++|+.+++++..+++.|+++.|++++.   +.+..+++.++++|.+|+......  . ...++++.|++ +++
T Consensus       201 ~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~---~~~~~~~~~a~~~L~nL~~~~~~~--~-~~~~~i~~Lv~-lL~  273 (644)
T 2z6h_A          201 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQ--E-GMEGLLGTLVQ-LLG  273 (644)
T ss_dssp             HHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTT---CSCHHHHHHHHHHHHHHGGGCTTC--C-SCHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh---cCCHHHHHHHHHHHHHHhhcchhh--h-hhhhHHHHHHH-HHc
Confidence            9999999999999999999999999999999999   568889999999999999754332  1 23478999999 677


Q ss_pred             cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC-HHHHHHHHHHHHHHHH
Q 015728          331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS-NRTKTKARMLLKLLRS  392 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~A~~~L~~l~~  392 (401)
                      +.++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.+|...++ +.+++.|.++|..|..
T Consensus       274 ~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          274 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            8888999999999999999888888899999999999999987433 7999999999999975

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=3.2e-23  Score=205.01  Aligned_cols=282  Identities=13%  Similarity=0.149  Sum_probs=235.5

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..|.++|.+  ++++.+..|+..|.+++..++.++..+.+.|+++.|+.+|.+...       ..+++.|++ +|.+
T Consensus       107 ~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-------~~v~~~a~~-~L~~  176 (450)
T 2jdq_A          107 GAVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-------LTMTRNAVW-ALSN  176 (450)
T ss_dssp             THHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-------HHHHHHHHH-HHHH
T ss_pred             CCHHHHHHHHcC--CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-------HHHHHHHHH-HHHH
Confidence            466777777764  468899999999999999998899999999999999999985322       569999999 9999


Q ss_pred             hcCCc-hhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728          173 LLVGE-TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS  250 (401)
Q Consensus       173 l~~~~-~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~  250 (401)
                      ++.+. ......+ ..++++.|+.+|++++.+++..++++|.+| +...  ++.+..+... |+++.|+.+|. ++..++
T Consensus       177 l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l-~~~~--~~~~~~~~~~-~~i~~L~~ll~~~~~~v~  251 (450)
T 2jdq_A          177 LCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYL-SDGP--NDKIQAVIDA-GVCRRLVELLMHNDYKVV  251 (450)
T ss_dssp             HHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHH-TSSS--HHHHHHHHHT-TTHHHHHHHTTCSCHHHH
T ss_pred             HhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHH-HCCC--cHHHHHHHHc-CcHHHHHHHHCCCchhHH
Confidence            98654 2222233 268999999999999999999999999999 7643  2556666654 88999999994 567799


Q ss_pred             HHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHhhHHHHHhCCCcHHHHHHHH
Q 015728          251 DAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IENSKDALINNPNGVYALVKMV  328 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~~~~~~~~~~g~i~~Lv~~l  328 (401)
                      ..|+++|.+|+...+ .+..+++.|+++.|+++|.   +++..++..|+++|.+++. .++....++ +.|+++.|++ +
T Consensus       252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~-~  326 (450)
T 2jdq_A          252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS---SPKESIKKEACWTISNITAGNRAQIQTVI-DANIFPALIS-I  326 (450)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHH-H
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHH-H
Confidence            999999999997655 4556788999999999999   6788999999999999996 455666665 6799999999 5


Q ss_pred             HhcCChhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728          329 FRVSDHEGSENAINSLMMICCD-SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       329 ~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  395 (401)
                      ++++++.++..|+++|.+|+.+ +++..+.+++.|+++.|+.+++.+ ++.+++.|.++|..+.+..+
T Consensus       327 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          327 LQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhch
Confidence            6777889999999999999975 556667788999999999999887 89999999999999988444

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=1.2e-23  Score=212.58  Aligned_cols=278  Identities=15%  Similarity=0.143  Sum_probs=232.8

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..|.++|++  ++++.+..|+..|.+++..++.++..+++.|++|.|+.+|.+++        .+++..++. +|.+
T Consensus       101 g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~--------~~~~~~~~~-~L~~  169 (529)
T 1jdh_A          101 GGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--------VKFLAITTD-CLQI  169 (529)
T ss_dssp             THHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--------HHHHHHHHH-HHHH
T ss_pred             CCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--------HHHHHHHHH-HHHH
Confidence            467777777764  35789999999999999998889999999999999999998865        458888888 8889


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~  250 (401)
                      ++.++++.+..+.+.|+++.|+.+|++++. ..+..++.+|.+| +..+   +++..+... |+++.|+.+++ ++.+.+
T Consensus       170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l-~~~~---~~~~~~~~~-g~~~~L~~ll~~~~~~~~  244 (529)
T 1jdh_A          170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCS---SNKPAIVEA-GGMQALGLHLTDPSQRLV  244 (529)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTST---THHHHHHHT-THHHHHHTTTTSSCHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH-hcCc---ccHHHHHHC-CCHHHHHHHHhCCChHHH
Confidence            998766776677688999999999988755 5667788899999 8665   788888875 88999999994 566799


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHH
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      +.++++|.+|+.......  ...|++|.|+++|.   +.+.++++.|+++|.+|+.. ++++..+. +.|+++.|++++.
T Consensus       245 ~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L~~ll~  318 (529)
T 1jdh_A          245 QNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVL  318 (529)
T ss_dssp             HHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHH
Confidence            999999999997654322  23589999999998   68889999999999999986 46777776 7899999999654


Q ss_pred             hcC-ChhHHHHHHHHHHHHhcCCH---HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          330 RVS-DHEGSENAINSLMMICCDSL---QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       330 ~~~-~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ..+ ++..++.|+.+|.+|+.+++   ..+..+.+.|+++.|+.+|+++..+..++.|.++|..+..
T Consensus       319 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~  385 (529)
T 1jdh_A          319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence            433 36899999999999998643   3577899999999999999988556999999999999886

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.91  E-value=3e-23  Score=219.58  Aligned_cols=278  Identities=12%  Similarity=0.141  Sum_probs=235.6

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +.+..|.+.|++. .+.+.+..|+..|++++.. +.++..+.+.|+|+.|+.+|++++        +.++..|++ +|.+
T Consensus       192 ~~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~--------~~v~~~A~~-aL~n  260 (780)
T 2z6g_A          192 QMVSAIVRTMQNT-NDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPV--------DSVLFHAIT-TLHN  260 (780)
T ss_dssp             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHH
T ss_pred             ChHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCC--------HHHHHHHHH-HHHH
Confidence            3455566666543 3688999999999998776 557999999999999999998876        459999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCch-hH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSE-AS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~-~~  250 (401)
                      |+.+.++.+..+.+.|+|+.|+.+|++++..++..++.+|.++ +...  ++++..+... |+++.|+.+|+ ++.+ .+
T Consensus       261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L-a~~~--~e~~~~i~~~-~~i~~Lv~lL~~~~~~~~~  336 (780)
T 2z6g_A          261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGN--QESKLIILAS-GGPQALVNIMRTYTYEKLL  336 (780)
T ss_dssp             HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHTT-THHHHHHHHHTTCCCHHHH
T ss_pred             HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCC--hHHHHHHHHc-CCHHHHHHHHhcCCHHHHH
Confidence            9977666677777889999999999999999999999999999 6533  3888888886 77999999995 3433 67


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR  330 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~  330 (401)
                      ..++.+|++|+.++.++..+++.|+|+.|+.+|.   +.+..++..|+++|.+|+......  . ...++++.|++ +++
T Consensus       337 ~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~---~~~~~~~~~a~~~L~~L~~~~~~~--~-~~~~~i~~Lv~-lL~  409 (780)
T 2z6g_A          337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQ--E-GMEGLLGTLVQ-LLG  409 (780)
T ss_dssp             HHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTT---CSCHHHHHHHHHHHHHHHTTCTTC--S-CCHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHc---CCchHHHHHHHHHHHHHhccchhh--h-hhhhHHHHHHH-HHc
Confidence            7899999999999999999999999999999998   567889999999999999765331  1 24578999999 678


Q ss_pred             cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCC-HHHHHHHHHHHHHHHH
Q 015728          331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCS-NRTKTKARMLLKLLRS  392 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~-~~~~~~A~~~L~~l~~  392 (401)
                      ..+..+++.|+.+|.+|+.++++.+..+++.|+++.|+.+|...++ +.+++.|.++|..|..
T Consensus       410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            8888999999999999999888888899999999999999987423 5899999999998875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=7e-23  Score=182.01  Aligned_cols=197  Identities=16%  Similarity=0.220  Sum_probs=173.1

Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-C
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCS-T  263 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-~  263 (401)
                      ..|..+.|+.+|++++.+++..|+++|.++ +..+  ++++..+.+. |+++.|+.+|+ ++..++..|+++|.||+. +
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l-~~~~--~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   85 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQI-ASGG--NEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGG   85 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHH-HTSC--HHHHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHH-HcCC--HHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999 6443  2778888776 88999999994 567799999999999994 6


Q ss_pred             CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHH
Q 015728          264 ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVFRVSDHEGSENAIN  342 (401)
Q Consensus       264 ~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~  342 (401)
                      ++++..+++.|++|.|+.+|.   +++..++..|+++|.+|+.+. +.+..+. +.|+++.|++ +++++++.+++.|+.
T Consensus        86 ~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~-ll~~~~~~v~~~a~~  160 (210)
T 4db6_A           86 NEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQ-LLSSPNEQILQEALW  160 (210)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHH-HTTCSCHHHHHHHHH
T ss_pred             cHHHHHHHHCCCHHHHHHHHc---CCcHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHH-HHcCCCHHHHHHHHH
Confidence            778999999999999999999   678899999999999999654 4555665 8899999999 677788899999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          343 SLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       343 ~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +|.+|+.++++.+..+.+.|+++.|+.+++++ ++.+|+.|.++|+.|+.
T Consensus       161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            99999998888888999999999999999887 99999999999998864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=6.3e-23  Score=212.97  Aligned_cols=278  Identities=15%  Similarity=0.141  Sum_probs=232.1

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..|.++|++  ++.+.|..|+..|.+++..++..+..+++.|++|.|+.+|++++        .+++..++. +|.+
T Consensus        98 g~i~~Lv~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--------~~~~~~a~~-~L~~  166 (644)
T 2z6h_A           98 GGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--------VKFLAITTD-CLQI  166 (644)
T ss_dssp             THHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------HHHHHHHHH-HHHH
T ss_pred             CCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--------HHHHHHHHH-HHHH
Confidence            567777787764  35789999999999999998889999999999999999998875        347777778 8888


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCC-HHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGS-CSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~-~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~  250 (401)
                      ++..+++.+..+.+.|+++.|+.+|++++ ...+..++.+|.+| +...   +++..+... |+++.|+.++. ++...+
T Consensus       167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL-s~~~---~~~~~l~~~-g~l~~L~~ll~~~~~~~~  241 (644)
T 2z6h_A          167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCS---SNKPAIVEA-GGMQALGLHLTDPSQRLV  241 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-TTCT---THHHHHHHT-THHHHHHTTTTCSCHHHH
T ss_pred             HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH-hcCc---ccHHHHHHC-CCHHHHHHHHhcCCHHHH
Confidence            99766666666668899999999998775 46778999999999 8765   889988886 88999999994 566799


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHH
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      +.++++|.||+......  ....|++|.|+++|.   +.+.++++.|+++|.+|+.. ++++..+. +.|+++.|++++.
T Consensus       242 ~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---~~d~~v~~~a~~aL~~L~~~~~~~~~~v~-~~g~v~~Lv~lL~  315 (644)
T 2z6h_A          242 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVL  315 (644)
T ss_dssp             HHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHH
Confidence            99999999999754332  223589999999999   67889999999999999986 46677775 7899999999655


Q ss_pred             hcCC-hhHHHHHHHHHHHHhcCCH---HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          330 RVSD-HEGSENAINSLMMICCDSL---QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       330 ~~~~-~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ..++ +.+++.|+.+|.+|+..++   ..+..+...|+++.|+.+|+++.++..++.|.++|..|..
T Consensus       316 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~  382 (644)
T 2z6h_A          316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  382 (644)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             ccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence            4443 6899999999999997543   3566688999999999999887557999999999999886

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.7e-22  Score=205.70  Aligned_cols=278  Identities=10%  Similarity=0.104  Sum_probs=217.7

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch--------------------------------------hhhHHHhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP--------------------------------------ASNCLIQL  136 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~--------------------------------------~r~~i~~~  136 (401)
                      +..|.++++.. .+......++..|.|++...+.                                      ++..+.++
T Consensus       378 L~~Lv~llk~~-~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea  456 (778)
T 3opb_A          378 TEILLTMIKSQ-KMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT  456 (778)
T ss_dssp             HHHHHHHHTTT-CCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhCC-CCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence            45555666531 2334667777777777763331                                      57788899


Q ss_pred             CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHH---HHHHHHHHHH
Q 015728          137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCS---IKKRLCHLVE  213 (401)
Q Consensus       137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~---~~~~aa~~L~  213 (401)
                      |+||.|+.+++++++        .+++.|++ +|.+|+.+. +.|..+++.|++++|+.+|.+++..   .|..|+.+|.
T Consensus       457 GvIp~Lv~Ll~S~s~--------~~re~A~~-aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA  526 (778)
T 3opb_A          457 ELISFLKREMHNLSP--------NCKQQVVR-IIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT  526 (778)
T ss_dssp             THHHHHHHHGGGSCH--------HHHHHHHH-HHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHcCCCH--------HHHHHHHH-HHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence            999999999998774        49999999 999999664 5556666889999999999988654   7999999999


Q ss_pred             HHHhcccchhhhhhhhc--cchHHHHHHHHHccC--Cch-------------hHHHHHHHHHHhcCCCc-----hhHHHH
Q 015728          214 VIISSSHETKELCCKLG--KDDRLLREIISLVHH--NSE-------------ASDAGVRAFSALCSTET-----NRKTLV  271 (401)
Q Consensus       214 ~l~s~~~~~~~~~~~i~--~~~g~i~~Lv~lL~~--~~~-------------~~~~a~~aL~~Ls~~~~-----n~~~iv  271 (401)
                      +| ....   +....+.  ...|+|++|+.+|..  +..             .+..|+.||.||+..++     .|..|+
T Consensus       527 rL-lis~---np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii  602 (778)
T 3opb_A          527 RM-LIFT---NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV  602 (778)
T ss_dssp             HH-HHTS---CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HH-HhcC---CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence            99 5443   2233332  223899999999962  211             27799999999998874     388899


Q ss_pred             hc-CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH-HHHHhCC-----CcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728          272 QE-GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK-DALINNP-----NGVYALVKMVFRVSDHEGSENAINSL  344 (401)
Q Consensus       272 ~~-G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~-~~~~~~~-----g~i~~Lv~~l~~~~~~~~~~~a~~~L  344 (401)
                      +. |++|.|..+|.   +++..++..|+++|++|+.++++. ..+....     +.++.||. +++.++...++.|.++|
T Consensus       603 ~~~ga~~~L~~LL~---s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~-Ll~s~D~~~r~AAagAL  678 (778)
T 3opb_A          603 STKVYWSTIENLML---DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVK-LLQLSDVESQRAVAAIF  678 (778)
T ss_dssp             HSHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHH-GGGCSCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHh---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHH-HHcCCCHHHHHHHHHHH
Confidence            85 99999999999   677889999999999999999886 3554222     13889999 67888999999999999


Q ss_pred             HHHhcCCHHHHHHHHHc-CcHHHHHHHhhc--CCCHHHHHHHHHHHHHHHH
Q 015728          345 MMICCDSLQAREEAICA-GVLTQLLLLLQS--QCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       345 ~~l~~~~~~~~~~~~~~-g~v~~L~~ll~~--~~~~~~~~~A~~~L~~l~~  392 (401)
                      .+++..++...+.+++. ++++.++.++++  + ++..+.+++.+++.+.+
T Consensus       679 AnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          679 ANIATTIPLIAKELLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCChHHHHHHHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence            99976667666688876 899999999998  5 89999999999999986

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=2e-22  Score=178.98  Aligned_cols=197  Identities=15%  Similarity=0.196  Sum_probs=170.1

Q ss_pred             hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 015728          135 QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEV  214 (401)
Q Consensus       135 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~  214 (401)
                      ..|+.+.|+.+|.+++        ++++..|++ +|.+++.++++.+..+.+.|+++.|+.+|++++.+++..|+++|.+
T Consensus        10 ~~~~~~~l~~LL~s~~--------~~v~~~a~~-~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~   80 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD--------QQELQSALR-KLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN   80 (210)
T ss_dssp             ---CHHHHHHHTTCSC--------HHHHHHHHH-HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcCCC--------HHHHHHHHH-HHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4688999999998876        459999999 9999997666666666689999999999999999999999999999


Q ss_pred             HHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccch
Q 015728          215 IISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERS  292 (401)
Q Consensus       215 l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~  292 (401)
                      | +..+  ++++..+.+. |+++.|+.+|+ ++..++..|+++|.||+. +++++..+++.|++|.|+++|.   +++..
T Consensus        81 l-~~~~--~~~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~  153 (210)
T 4db6_A           81 I-ASGG--NEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQ  153 (210)
T ss_dssp             H-TTSC--HHHHHHHHHT-TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHH
T ss_pred             H-hcCC--cHHHHHHHHC-CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc---CCCHH
Confidence            9 7543  2788888775 88999999994 567799999999999995 5556778899999999999999   67889


Q ss_pred             HHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhc
Q 015728          293 LAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICC  349 (401)
Q Consensus       293 ~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~  349 (401)
                      ++..|+++|.+|+.. ++.+..+. +.|+++.|++ ++.++++.+++.|+.+|.+|+.
T Consensus       154 v~~~a~~aL~~l~~~~~~~~~~~~-~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          154 ILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHhc
Confidence            999999999999987 66777775 7899999999 6778888999999999999975

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=5.9e-22  Score=209.66  Aligned_cols=278  Identities=15%  Similarity=0.155  Sum_probs=229.6

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..|.++|++  ++...|..|+..|.+++...+..+..+.+.|+|+.|+.+|.+.+        .++++.++. +|.+
T Consensus       234 g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~--------~~v~~~a~~-aL~~  302 (780)
T 2z6g_A          234 GGIPALVNMLGS--PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--------VKFLAITTD-CLQI  302 (780)
T ss_dssp             THHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------HHHHHHHHH-HHHH
T ss_pred             CCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--------HHHHHHHHH-HHHH
Confidence            345566666654  35789999999999999999889999999999999999998865        458888888 8888


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~  250 (401)
                      ++..+++.+..+.+.|+++.|+.+|++++. ..++.++.+|.+| +...   +++..+... |+++.|+.+|. ++...+
T Consensus       303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L-s~~~---~~~~~i~~~-g~l~~Ll~lL~~~~~~~~  377 (780)
T 2z6g_A          303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCS---SNKPAIVEA-GGMQALGLHLTDPSQRLV  377 (780)
T ss_dssp             HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HTST---THHHHHHHT-THHHHHGGGTTCSCHHHH
T ss_pred             HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh-hcCh---HHHHHHHHh-chHHHHHHHHcCCchHHH
Confidence            887666666666688999999999988765 4567888999999 7665   788888875 88999999994 566799


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHHHHHHH
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      +.|+++|.+|+......  ....|+++.|+++|.   +.+..+++.|+++|.+|+..+ +++..+. +.|+++.|+++|.
T Consensus       378 ~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~---~~d~~vr~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~  451 (780)
T 2z6g_A          378 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVL  451 (780)
T ss_dssp             HHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSCHHHHHHHH-TTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccchhh--hhhhhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCCHHHHHHHH-HCCCHHHHHHHHH
Confidence            99999999999755431  234679999999998   678899999999999999864 5666665 8899999999665


Q ss_pred             hcCC-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          330 RVSD-HEGSENAINSLMMICCDSLQ---AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       330 ~~~~-~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ..++ ..+++.|+.+|.+|+..+.+   .+..+...|+++.|+.+|.++..+..++.|.++|..|..
T Consensus       452 ~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~  518 (780)
T 2z6g_A          452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  518 (780)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence            5444 37999999999999875432   466888999999999999888456999999999999986

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.87  E-value=4.4e-21  Score=179.41  Aligned_cols=226  Identities=10%  Similarity=0.063  Sum_probs=177.2

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHH-HhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhc
Q 015728          106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLK-QLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLL  184 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v  184 (401)
                      +++.+.+..|+..|..++...+ |+..|.+.|++|+|+. +|.+++        +.+++.|++ +|.+++.+++..+..+
T Consensus        51 ~~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~--------~~vr~~Aa~-~Lg~ia~~n~~~~~~v  120 (296)
T 1xqr_A           51 AADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGA--------AGLRWRAAQ-LIGTCSQNVAAIQEQV  120 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSS--------HHHHHHHHH-HHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCC--------HHHHHHHHH-HHHHHHhCCHHHHHHH
Confidence            3557899999999999998654 8888899999999999 998876        559999999 9999998888777777


Q ss_pred             ccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC
Q 015728          185 NEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS  262 (401)
Q Consensus       185 ~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~  262 (401)
                      .+.|++++|+.+|+++ +..++..|+++|.+| ....  +.....+... |+++.|+.+| +++..+++.|+++|.+|+.
T Consensus       121 v~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl-~~~~--~~~~~~~~~~-ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~  196 (296)
T 1xqr_A          121 LGLGALRKLLRLLDRDACDTVRVKALFAISCL-VREQ--EAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLV  196 (296)
T ss_dssp             HHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHccCCCHHHHHHHHHHHHHH-HcCC--cHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            7899999999999865 789999999999999 5433  1556666665 7899999999 5677899999999999985


Q ss_pred             -CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHHhCC-CcHHHHHHHH---Hh-cC-Ch
Q 015728          263 -TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALINNP-NGVYALVKMV---FR-VS-DH  334 (401)
Q Consensus       263 -~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~~~~-g~i~~Lv~~l---~~-~~-~~  334 (401)
                       +++.+..+++.|+||+|+.+|.   +++..+++.|+.+|.+|+.... ...... .. ..+..+++-.   ++ .. ..
T Consensus       197 ~~~~~~~~vv~~g~i~~Lv~LL~---~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~~~~~lq~~e~~~  272 (296)
T 1xqr_A          197 GHPEHKGTLCSMGMVQQLVALVR---TEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRHRCQLLQQHEEYQ  272 (296)
T ss_dssp             HCGGGHHHHHHTTHHHHHHHHHT---SCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHHHHHHHTTCGGGH
T ss_pred             CChHHHHHHHHcCCHHHHHHHHc---CCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHHHHHHccchHHHH
Confidence             5678999999999999999999   6788999999999999998733 333332 22 1233333211   11 11 23


Q ss_pred             hHHHHHHHHHHHHhc
Q 015728          335 EGSENAINSLMMICC  349 (401)
Q Consensus       335 ~~~~~a~~~L~~l~~  349 (401)
                      +..+.|..++..+..
T Consensus       273 e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          273 EELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            456666666666543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.85  E-value=6e-20  Score=171.74  Aligned_cols=186  Identities=17%  Similarity=0.162  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH-HhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHH
Q 015728          159 VQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLR  237 (401)
Q Consensus       159 ~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~  237 (401)
                      .+.+..|+. .|..+..+.++...+ ...|++++|+. +|++++.++|+.|+++|.++ +.++  +.++..+... |+++
T Consensus        54 ~e~k~~Al~-~L~~lv~~~dna~~~-~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~i-a~~n--~~~~~~vv~~-g~l~  127 (296)
T 1xqr_A           54 QQEREGALE-LLADLCENMDNAADF-CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC-SQNV--AAIQEQVLGL-GALR  127 (296)
T ss_dssp             HHHHHHHHH-HHHHHHTSHHHHHHH-HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHH
T ss_pred             HHHHHHHHH-HHHHHHhChhhHHHH-HHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhCC--HHHHHHHHHC-CCHH
Confidence            456788888 888888655554444 47899999999 99999999999999999999 6554  3788888876 8899


Q ss_pred             HHHHHcc-C-CchhHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHH
Q 015728          238 EIISLVH-H-NSEASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDA  313 (401)
Q Consensus       238 ~Lv~lL~-~-~~~~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~  313 (401)
                      +|+.+|+ + +..+++.|+++|.||+.+ +.+...+++.|++|+|+++|.   +++..++..|+++|.+|+.. ++.+..
T Consensus       128 ~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~---~~d~~v~~~A~~aLs~L~~~~~~~~~~  204 (296)
T 1xqr_A          128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---QQVQKLKVKSAFLLQNLLVGHPEHKGT  204 (296)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCChHHHHH
Confidence            9999995 3 567999999999999965 456778889999999999999   67889999999999999864 667777


Q ss_pred             HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH
Q 015728          314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR  355 (401)
Q Consensus       314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  355 (401)
                      ++ +.|+|+.|++ ++++.++.+++.|+.+|.+|....+...
T Consensus       205 vv-~~g~i~~Lv~-LL~~~d~~v~~~al~aL~~l~~~~~~~~  244 (296)
T 1xqr_A          205 LC-SMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTDFPQGV  244 (296)
T ss_dssp             HH-HTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             HH-HcCCHHHHHH-HHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence            76 8899999999 6778888999999999999998865444

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.84  E-value=5.7e-20  Score=188.54  Aligned_cols=280  Identities=10%  Similarity=0.064  Sum_probs=214.7

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhcc-CCcccchhhhHHHHHHHHHHHHH
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFG-KAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s-~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      ....+.+.|...  +.+.+..|+..|..++... ..|..|++ .|++..|+.++++ .+.        .+...++. ++.
T Consensus       335 La~~~~~~L~~~--~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~--------s~~Ygal~-IL~  402 (778)
T 3opb_A          335 LSEIFINAISRR--IVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMT--------HCLYGLLV-IMA  402 (778)
T ss_dssp             HHHHHHHHTTTC--CHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCT--------THHHHHHH-HHH
T ss_pred             HHHHHHHHHhcC--CccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCc--------hHHHHHHH-HHH
Confidence            344455555432  3345899999999998764 47788887 6779999999985 433        38888999 999


Q ss_pred             hhcCCchh--------------------------------------hhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 015728          172 LLLVGETE--------------------------------------SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVE  213 (401)
Q Consensus       172 ~l~~~~~~--------------------------------------~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~  213 (401)
                      |++...+.                                      ++..+.++|+||.|+.+++++++.+|+.|+++|.
T Consensus       403 NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~  482 (778)
T 3opb_A          403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIY  482 (778)
T ss_dssp             HTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred             HhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99863321                                      3456679999999999999999999999999999


Q ss_pred             HHHhcccchhhhhhhhccchHHHHHHHHHccC-Cc---hhHHHHHHHHHHhcCCCchhHHHH--h-cCcHHHHHHHHHhh
Q 015728          214 VIISSSHETKELCCKLGKDDRLLREIISLVHH-NS---EASDAGVRAFSALCSTETNRKTLV--Q-EGAINGLIAYISNA  286 (401)
Q Consensus       214 ~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~---~~~~~a~~aL~~Ls~~~~n~~~iv--~-~G~v~~Lv~lL~~~  286 (401)
                      +| +.+.   ++|..++.. |++++|+.+|.. ..   +.+..|+.+|.+|....++...+-  + .|+||+|++||.. 
T Consensus       483 nL-S~d~---~~R~~lvqq-Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~-  556 (778)
T 3opb_A          483 NI-TRSK---NFIPQLAQQ-GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPR-  556 (778)
T ss_dssp             HH-HTSG---GGHHHHHHT-THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCC-
T ss_pred             HH-cCCH---HHHHHHHHC-CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCC-
Confidence            99 8776   899999885 889999999943 22   278999999999996555444331  1 4999999999982 


Q ss_pred             ccccc-------------hHHHHHHHHHHHHhCCH-----hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          287 LTRER-------------SLAAIAMARIEQLLAIE-----NSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       287 ~~~~~-------------~~~~~a~~~L~~La~~~-----~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                       +++.             ..+..|+.+|.|||..+     +.|..++.+.|+++.|+.+ +.+.+..+++.|+.+++||+
T Consensus       557 -~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L-L~s~n~~VrrAA~elI~NL~  634 (778)
T 3opb_A          557 -STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL-MLDENVPLQRSTLELISNMM  634 (778)
T ss_dssp             -SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG-GGCSSHHHHHHHHHHHHHHH
T ss_pred             -CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH-HhCCCHHHHHHHHHHHHHHh
Confidence             1111             12668999999999875     3477787445999999995 55667789999999999999


Q ss_pred             cCCHHHH-HHHHHc------CcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728          349 CDSLQAR-EEAICA------GVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       349 ~~~~~~~-~~~~~~------g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  395 (401)
                      .+. +.+ +++...      +.++.|+.|++++ +..+|+.|+++|..+...++
T Consensus       635 ~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~  686 (778)
T 3opb_A          635 SHP-LTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIP  686 (778)
T ss_dssp             TSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCH
T ss_pred             CCc-HHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCh
Confidence            864 433 244322      2488999999887 99999999999999964344

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.75  E-value=1.3e-18  Score=135.23  Aligned_cols=77  Identities=32%  Similarity=0.466  Sum_probs=70.6

Q ss_pred             cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCC
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQ   82 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~   82 (401)
                      ....++++|.||||+++|++||+++|||+||+.||.+|+. +..+||.|+.++....+.+|..++++|+.|+..++.+
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   98 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNS   98 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTCC
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhhc
Confidence            3445789999999999999999999999999999999998 5788999999999889999999999999999988643

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.75  E-value=7.3e-19  Score=132.70  Aligned_cols=76  Identities=32%  Similarity=0.442  Sum_probs=69.4

Q ss_pred             ccCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCC
Q 015728            4 DRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGG   80 (401)
Q Consensus         4 ~~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~   80 (401)
                      .....++++|.||||+++|++||+++|||+||+.||.+|+. +..+||.|+..+....+.+|..++++|+.|++.++
T Consensus         6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLL-NSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH-HCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHh-cCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            34456889999999999999999999999999999999998 46789999999988899999999999999998774

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.74  E-value=3.2e-18  Score=132.44  Aligned_cols=78  Identities=32%  Similarity=0.402  Sum_probs=70.9

Q ss_pred             cCCCCCCcccccccccccCCceEcCcc-ccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCCC
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLCTG-QTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQH   83 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cg-h~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~~   83 (401)
                      ....++++|.||||+++|++||+++|| |+||+.||.+||.. ..+||.|+.++....+.+|..++++|+.|+..++...
T Consensus        15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~   93 (98)
T 1wgm_A           15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQS   93 (98)
T ss_dssp             CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCS
T ss_pred             hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhh
Confidence            344578999999999999999999999 99999999999984 6789999999998899999999999999999986543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.74  E-value=1.6e-18  Score=129.03  Aligned_cols=75  Identities=51%  Similarity=0.931  Sum_probs=70.0

Q ss_pred             CCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728            7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG   81 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~   81 (401)
                      ..++++|.||||+++|.+|++++|||+||+.||.+|+..+...||.|+..+....+.+|..++++|+.|++++|+
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~   77 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence            457889999999999999999999999999999999986688899999999888899999999999999999975

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.68  E-value=4.4e-17  Score=138.89  Aligned_cols=77  Identities=30%  Similarity=0.488  Sum_probs=70.7

Q ss_pred             CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCCC
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGGQ   82 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~~   82 (401)
                      ...+|++|.||||+++|.+||+++|||+||+.||..|+..+..+||.|+.++....+.+|..++++|+.|+..+|..
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~  176 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV  176 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence            45689999999999999999999999999999999999875457999999998889999999999999999999753

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.64  E-value=4.5e-16  Score=119.58  Aligned_cols=77  Identities=27%  Similarity=0.429  Sum_probs=67.9

Q ss_pred             cCCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHc-CCCCCCCCcccC-CCCCCCCcHHHHHHHHHHHHhCCC
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAA-GNLTCPVTMQTL-HDPSIVPNHTLRHLINQWLQMGGG   81 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~-~~~~CP~c~~~~-~~~~~~~n~~l~~~i~~~~~~~~~   81 (401)
                      ....+++++.||||.++|.+|++++ |||+||..||.+|+.. +...||.|+..+ ....+.+|..+.++++.|+..++.
T Consensus         6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~   85 (92)
T 3ztg_A            6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGY   85 (92)
T ss_dssp             SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTC
T ss_pred             ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhH
Confidence            3455788999999999999999999 9999999999999975 457899999997 456889999999999999987754

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=2.1e-16  Score=121.66  Aligned_cols=74  Identities=22%  Similarity=0.432  Sum_probs=65.5

Q ss_pred             CCCcccccccccccCCceEcC-ccccccHHhHHHHHHcC-----CCCCCC--Cccc-CCCCCCCCcHHHHHHHHHHHHhC
Q 015728            9 IPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAG-----NLTCPV--TMQT-LHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~-----~~~CP~--c~~~-~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      .+++|.||||+++|.+||+++ |||+||+.||.+||..+     ..+||.  |+.. +....+.+|..++++|+.|++.+
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~   83 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR   83 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence            467899999999999999996 99999999999999853     468999  7766 77778999999999999999988


Q ss_pred             CCC
Q 015728           80 GGQ   82 (401)
Q Consensus        80 ~~~   82 (401)
                      +..
T Consensus        84 ~r~   86 (94)
T 2yu4_A           84 HRH   86 (94)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            644

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.62  E-value=3.1e-16  Score=145.82  Aligned_cols=77  Identities=29%  Similarity=0.503  Sum_probs=70.8

Q ss_pred             cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG   81 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~   81 (401)
                      ...+++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..++++|+.|+..+|.
T Consensus       201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~  277 (281)
T 2c2l_A          201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW  277 (281)
T ss_dssp             SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred             cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCC
Confidence            44567899999999999999999999999999999999997666699999999888899999999999999999875

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.61  E-value=1.2e-13  Score=138.45  Aligned_cols=285  Identities=12%  Similarity=0.162  Sum_probs=209.2

Q ss_pred             hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH-
Q 015728           92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ-  170 (401)
Q Consensus        92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L-  170 (401)
                      .+-+..|..-|++ +.-.+.|+.|+..|+.++++   +|..+ .+++++.|+..|+....+      .+....++. +| 
T Consensus        20 ~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~~D------~e~v~~~Le-tL~   87 (651)
T 3grl_A           20 AETIQKLCDRVAS-STLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDRSD------SEIIGYALD-TLY   87 (651)
T ss_dssp             HHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCTTC------HHHHHHHHH-HHH
T ss_pred             hhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhccccc------HHHHHHHHH-HHH
Confidence            3666677666665 35689999999999999754   55554 567799999999876543      678888888 55 


Q ss_pred             HhhcCCchh----------------h-hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccch
Q 015728          171 KLLLVGETE----------------S-LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD  233 (401)
Q Consensus       171 ~~l~~~~~~----------------~-~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~  233 (401)
                      ..++.++++                . -.++.+.+.|+.|+.+|++.+-.+|..+...|..| ....+ +.+.+.|..+.
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L-~~~r~-~~~Q~~Il~~p  165 (651)
T 3grl_A           88 NIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSL-LKQLG-PQVQQIILVSP  165 (651)
T ss_dssp             HHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHSH-HHHHHHHHHST
T ss_pred             HHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHH-HhcCc-HHHHHHHHhCc
Confidence            445533321                1 12345678899999999999999999999999999 44331 24888888777


Q ss_pred             HHHHHHHHHccCCc-hhHHHHHHHHHHhcCCCchhHHHHh-cCcHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhCCHh-
Q 015728          234 RLLREIISLVHHNS-EASDAGVRAFSALCSTETNRKTLVQ-EGAINGLIAYISNALT-RERSLAAIAMARIEQLLAIEN-  309 (401)
Q Consensus       234 g~i~~Lv~lL~~~~-~~~~~a~~aL~~Ls~~~~n~~~iv~-~G~v~~Lv~lL~~~~~-~~~~~~~~a~~~L~~La~~~~-  309 (401)
                      ++|+.||.+|+++. .++-.|+..|.+|+.+..+..+++. .|+++.|+.++...+. ....+.+.++.+|.+|...+. 
T Consensus       166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s  245 (651)
T 3grl_A          166 MGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS  245 (651)
T ss_dssp             THHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence            88999999997654 4888899999999987776666655 6999999999985321 233688999999999998654 


Q ss_pred             hHHHHHhCCCcHHHHHHHHHhcCChh------HHHH---HHHHHHHHhcC------CHHHHHHHHHcCcHHHHHHHhhcC
Q 015728          310 SKDALINNPNGVYALVKMVFRVSDHE------GSEN---AINSLMMICCD------SLQAREEAICAGVLTQLLLLLQSQ  374 (401)
Q Consensus       310 ~~~~~~~~~g~i~~Lv~~l~~~~~~~------~~~~---a~~~L~~l~~~------~~~~~~~~~~~g~v~~L~~ll~~~  374 (401)
                      |+..+ ++.|+|+.|+. ++..++..      ...+   ++.++..|+..      +...+..+.+.|+++.|+.++.+.
T Consensus       246 NQ~~F-rEt~~i~~L~~-LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~  323 (651)
T 3grl_A          246 NQNFF-KEGSYIQRMKP-WFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT  323 (651)
T ss_dssp             HHHHH-HHTTCGGGGGG-GGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred             HHHHH-HHcCCHHHHHH-HhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC
Confidence            66666 58899999999 56543321      1222   45555555554      235677899999999999998765


Q ss_pred             C-CHHHHHHHHHHHHHHHH
Q 015728          375 C-SNRTKTKARMLLKLLRS  392 (401)
Q Consensus       375 ~-~~~~~~~A~~~L~~l~~  392 (401)
                      + ....+..|..++.-+.+
T Consensus       324 ~~p~~i~~~Al~tla~~ir  342 (651)
T 3grl_A          324 GVPADILTETINTVSEVIR  342 (651)
T ss_dssp             SCCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            3 45677777777766554

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.54  E-value=7.3e-13  Score=132.90  Aligned_cols=284  Identities=10%  Similarity=0.109  Sum_probs=212.6

Q ss_pred             hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch-----------------hhhHHH-hcCChHHHHHHhccCCccc
Q 015728           92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP-----------------ASNCLI-QLGFLPLLLKQLFGKAESK  153 (401)
Q Consensus        92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~-----------------~r~~i~-~~G~i~~Lv~lL~s~~~~~  153 (401)
                      ..+.+.+...|+....+.+.-+.++..|.++...++.                 +.+.+. +.+.|+.|+.+|.+.+.  
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--  136 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--  136 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--
Confidence            4567788888888888899999999999988865543                 222333 47899999999988764  


Q ss_pred             chhhhHHHHHHHHHHHHHhhcCCchh-hhh-hcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhcc
Q 015728          154 FSQVYVQFVEESLSCVQKLLLVGETE-SLN-LLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGK  231 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~L~~l~~~~~~-~~~-~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~  231 (401)
                            .++.+++. +|..|+.+..+ ..+ ++..+++|+.|+.+|++....+|..+..+|.+| +..+   ..-++++.
T Consensus       137 ------~vR~~alq-lL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~L-t~~n---~~iQklVA  205 (651)
T 3grl_A          137 ------HVRWPGVK-LLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQAL-TRSN---GAIQKIVA  205 (651)
T ss_dssp             ------HHHHHHHH-HHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHH-HTTC---HHHHHHHH
T ss_pred             ------HHHHHHHH-HHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHH-hcCC---HHHHHHHH
Confidence                  48999999 88877755554 444 444679999999999999999999999999999 6665   44555555


Q ss_pred             chHHHHHHHHHcc--C---CchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccc------hHHHH---
Q 015728          232 DDRLLREIISLVH--H---NSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRER------SLAAI---  296 (401)
Q Consensus       232 ~~g~i~~Lv~lL~--~---~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~------~~~~~---  296 (401)
                      .+|+++.|+.+++  +   +..+...++.+|.||.. ++.|+..+.|.|++|.|..+|..   ++.      ....+   
T Consensus       206 FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~---~~~~~~W~~Qk~~N~~~  282 (651)
T 3grl_A          206 FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEV---GDENSGWSAQKVTNLHL  282 (651)
T ss_dssp             HTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCC---CSCSSCCCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCC---CccccccHHHHHHHHHH
Confidence            5799999999992  2   23589999999999995 66699999999999999999973   221      12344   


Q ss_pred             HHHHHHHHhCC-------HhhHHHHHhCCCcHHHHHHHHHhcC-ChhHHHHHHHHHHHHhcCCHHHHHHHHHcC------
Q 015728          297 AMARIEQLLAI-------ENSKDALINNPNGVYALVKMVFRVS-DHEGSENAINSLMMICCDSLQAREEAICAG------  362 (401)
Q Consensus       297 a~~~L~~La~~-------~~~~~~~~~~~g~i~~Lv~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g------  362 (401)
                      ++.++..|...       ..++.++. +.|+++.|+++++..+ ...++..|+.++..+..+++..+..+.+..      
T Consensus       283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~-~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~  361 (651)
T 3grl_A          283 MLQLVRVLVSPNNPPGATSSCQKAMF-QCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP  361 (651)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHH-HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHH-HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC
Confidence            66777777754       13556665 8899999999655443 456788899999999999988887777643      


Q ss_pred             ---cHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          363 ---VLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       363 ---~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                         .+..|+.++.+......|-.|...++-+-.
T Consensus       362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             cChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence               334455556555456778777776666554

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.53  E-value=6.8e-15  Score=119.47  Aligned_cols=69  Identities=19%  Similarity=0.379  Sum_probs=62.5

Q ss_pred             CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC-CCCCCcHHHHHHHHHHHH
Q 015728            9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-PSIVPNHTLRHLINQWLQ   77 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~-~~~~~n~~l~~~i~~~~~   77 (401)
                      +.+++.||||.++|.+|++++|||+||..|+..|+..+...||.|+..+.. ..+.+|..+.++++.|..
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p  118 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP  118 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence            356789999999999999999999999999999998666789999999977 678999999999998864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.49  E-value=1.6e-14  Score=120.85  Aligned_cols=69  Identities=20%  Similarity=0.416  Sum_probs=63.0

Q ss_pred             CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC-CCCCcHHHHHHHHHHHH
Q 015728            9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP-SIVPNHTLRHLINQWLQ   77 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~-~~~~n~~l~~~i~~~~~   77 (401)
                      +++++.|+||.++|.+|++++|||+||..|+..|+..+...||.|+..+... .+.+|..++++++.|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            3467899999999999999999999999999999997667899999999877 88999999999998864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.48  E-value=1.5e-14  Score=112.60  Aligned_cols=71  Identities=21%  Similarity=0.330  Sum_probs=64.0

Q ss_pred             CCCcccccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728            9 IPHLFRCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      +.+++.|+||+++|.+|++ ++|||+||..||.+|+......||.||..+....+..|..+..+++.+.+.+
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~   90 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ   90 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence            4568999999999999999 8999999999999999976578999999998888888988988888887766

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.47  E-value=2.9e-14  Score=110.94  Aligned_cols=69  Identities=23%  Similarity=0.433  Sum_probs=62.9

Q ss_pred             CCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728           10 PHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      .+++.|+||.+.|.+|+++ +|||+||..|+.+|+. ....||.|+..+....+.+|..+.++++.+++..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            3568999999999999998 8999999999999998 5678999999998878999999999999998765

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.46  E-value=1e-14  Score=110.09  Aligned_cols=69  Identities=22%  Similarity=0.359  Sum_probs=58.3

Q ss_pred             CCccCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcC-----CCCCCCCcccCCCCCCCCcHHHHH
Q 015728            2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG-----NLTCPVTMQTLHDPSIVPNHTLRH   70 (401)
Q Consensus         2 ~~~~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~-----~~~CP~c~~~~~~~~~~~n~~l~~   70 (401)
                      +......+.+++.|+||.+.+.+|+.++|||+||..|+..|+...     ...||.|+..+....+.+|..+++
T Consensus         9 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A            9 ASSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             hHHHHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            344555678899999999999999999999999999999999862     678999999998877777765543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.8e-14  Score=108.69  Aligned_cols=69  Identities=23%  Similarity=0.495  Sum_probs=58.0

Q ss_pred             CCccCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHc-----CCCCCCCCcccCCCCCCCCcHHHHH
Q 015728            2 KEDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA-----GNLTCPVTMQTLHDPSIVPNHTLRH   70 (401)
Q Consensus         2 ~~~~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~-----~~~~CP~c~~~~~~~~~~~n~~l~~   70 (401)
                      +......+.+.+.|+||.+.+.+|+.++|||+||..|+..|+..     +...||.|+..+....+.+|..+++
T Consensus         9 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecv_A            9 ASGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred             hHHHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence            33444567889999999999999999999999999999999885     3678999999998877777765543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=6e-14  Score=104.87  Aligned_cols=61  Identities=20%  Similarity=0.231  Sum_probs=51.9

Q ss_pred             CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHH
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL   68 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l   68 (401)
                      .....+.+.|+||.+.|.+|++++|||+||..|+.+|+. ....||.|+..+. ..+.+|..+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~-~~~~~~~~l   69 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYICDQPTG-GIFNPAKEL   69 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC-SCCEECHHH
T ss_pred             cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH-CCCcCCCcCcccc-ccCCcHHHH
Confidence            344567899999999999999999999999999999998 4678999999986 466777444

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.42  E-value=4.2e-15  Score=110.69  Aligned_cols=66  Identities=24%  Similarity=0.413  Sum_probs=56.0

Q ss_pred             cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcC------CCCCCCCcccCCCCCCCCcHHHHH
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG------NLTCPVTMQTLHDPSIVPNHTLRH   70 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~------~~~CP~c~~~~~~~~~~~n~~l~~   70 (401)
                      ....+.+++.|+||.+.|.+|++++|||+||..|+.+|+...      ...||.|+..+....+.+|..+++
T Consensus         5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A            5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            345578899999999999999999999999999999998752      678999999998777777765543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.6e-13  Score=98.24  Aligned_cols=57  Identities=12%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             cCCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCC
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS   61 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~   61 (401)
                      ....+++++.|+||.+.+.+|+.++|||+||..|+.+|+..+...||.|+..+...+
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A            8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            344567899999999999999999999999999999999756778999999887654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.41  E-value=1.1e-13  Score=109.49  Aligned_cols=68  Identities=18%  Similarity=0.398  Sum_probs=59.7

Q ss_pred             CCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCC----CCCCcHHHHHHHHHHHH
Q 015728            9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP----SIVPNHTLRHLINQWLQ   77 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~----~~~~n~~l~~~i~~~~~   77 (401)
                      +.+++.||||.++|.+|+++ +|||+||..|+..|+. ....||.|+..+...    .+.+|..+.++++.+..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHT-SCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHH-hCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            56789999999999999997 9999999999999998 457899999998765    56789999999887754

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.40  E-value=1.3e-13  Score=110.70  Aligned_cols=73  Identities=19%  Similarity=0.380  Sum_probs=63.9

Q ss_pred             CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHh
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQM   78 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~   78 (401)
                      ...+.+++.||||++.+.+|++++|||+||..|+.+|+..+...||.|+..+....+.++..+.+.+..+.-.
T Consensus        12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~   84 (118)
T 3hct_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVK   84 (118)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEEE
T ss_pred             ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccceeE
Confidence            3457789999999999999999999999999999999987666899999999887788899888888776543

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.39  E-value=1.2e-13  Score=110.86  Aligned_cols=67  Identities=18%  Similarity=0.378  Sum_probs=61.4

Q ss_pred             CCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728           10 PHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      .+++.||||.++|.+|+++ +|||+||..|+..|+.   ..||.|+..+....+.+|..+.++++.+++..
T Consensus        20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            4689999999999999999 9999999999999986   67999999998888999999999999987755

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=4.4e-13  Score=97.71  Aligned_cols=59  Identities=17%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             CCCCCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCc
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN   65 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n   65 (401)
                      ...+.+++.|+||++.|.+|+++ +|||+||..|+.+|+.. ...||.|+..+...+...+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            34577899999999999999997 99999999999999984 6789999999877655443

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.38  E-value=7e-14  Score=111.91  Aligned_cols=69  Identities=19%  Similarity=0.363  Sum_probs=59.5

Q ss_pred             CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC-------CCCCCcHHHHHHHHHHH
Q 015728            8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-------PSIVPNHTLRHLINQWL   76 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~-------~~~~~n~~l~~~i~~~~   76 (401)
                      ...+++.|+||.++|.+|++++|||+||..|+.+|+..+...||.|+..+..       ..+..|..+..+++.+.
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            3456899999999999999999999999999999998667889999998763       45677888888887774

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.38  E-value=4.9e-13  Score=97.96  Aligned_cols=55  Identities=29%  Similarity=0.436  Sum_probs=47.7

Q ss_pred             cCCCCCCcccccccccccCCceEcC-ccccccHHhHHHHHHcC-CCCCCCCcccCCC
Q 015728            5 RQMTIPHLFRCPISLDLFTDPVTLC-TGQTYDRSSIEKWLAAG-NLTCPVTMQTLHD   59 (401)
Q Consensus         5 ~~~~~~~~~~C~iC~~~~~~Pv~~~-Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~   59 (401)
                      ....+++++.|+||+++|.+|++++ |||+||..||.+|+... ...||.|+..+..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A            8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            3445778999999999999999999 99999999999999853 4789999997543

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.9e-13  Score=121.82  Aligned_cols=70  Identities=17%  Similarity=0.285  Sum_probs=62.9

Q ss_pred             CCCcccccccccccCCceEc-CccccccHHhHHHHHHc-CCCCCCC--CcccCCCCCCCCcHHHHHHHHHHHHh
Q 015728            9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAA-GNLTCPV--TMQTLHDPSIVPNHTLRHLINQWLQM   78 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~-~~~~CP~--c~~~~~~~~~~~n~~l~~~i~~~~~~   78 (401)
                      ...+|+||||+++|++||+. .|||+||+.||..||.. +.+.||+  |+..+...++.+|..+.++++.|+.+
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            34689999999999999985 99999999999999985 3578999  99999888999999999999998764

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=6.6e-13  Score=97.02  Aligned_cols=56  Identities=25%  Similarity=0.517  Sum_probs=48.9

Q ss_pred             CCCCCcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCCcccCCCCCC
Q 015728            7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDPSI   62 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c~~~~~~~~~   62 (401)
                      ..+.+++.|+||.+.+.+|++++|||+||..|+.+|+..  +...||.|+..+...++
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            446789999999999999999999999999999999973  46789999998876543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.35  E-value=2.8e-13  Score=107.83  Aligned_cols=68  Identities=21%  Similarity=0.482  Sum_probs=57.1

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHcC--CCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG--NLTCPVTMQTLHDPSIVPNHTLRHLINQWLQ   77 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~--~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~   77 (401)
                      .+.+.|+||.+.+.+|++++|||+||..|+..|+...  ...||.|+..+....+.+|..+.++++.+.+
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999853  3689999999988777777666666665553

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.35  E-value=3e-13  Score=115.43  Aligned_cols=70  Identities=24%  Similarity=0.413  Sum_probs=60.7

Q ss_pred             CCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCC-CCCCCcHHHHHHHHHHHHh
Q 015728            9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD-PSIVPNHTLRHLINQWLQM   78 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~-~~~~~n~~l~~~i~~~~~~   78 (401)
                      +.+++.||||.+.|.+|+++ +|||+||..|+..|+..+...||.|+..+.. ..+.+|..+.++++.+...
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            44678999999999999997 9999999999999999767889999999854 4688999999999998653

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.34  E-value=4.3e-13  Score=110.83  Aligned_cols=64  Identities=20%  Similarity=0.493  Sum_probs=52.8

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHH
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWL   76 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~   76 (401)
                      .+++.||||.+.|.+|++++|||+||..|+..|+. ....||.||.++...  ..+..+...++.+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            45689999999999999999999999999999997 567899999988643  34566666666554

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.6e-12  Score=92.03  Aligned_cols=47  Identities=28%  Similarity=0.565  Sum_probs=42.5

Q ss_pred             CCCCCcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCC
Q 015728            7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVT   53 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c   53 (401)
                      ..+.+++.||||++.+.+|++++|||+||..|+.+|+..  +...||.|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            447789999999999999999999999999999999985  46789987

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.31  E-value=1.5e-10  Score=102.20  Aligned_cols=185  Identities=14%  Similarity=0.152  Sum_probs=150.9

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      .+.++.|+.+|.+++        +.++..|+. .|..+.           ..+.++.|+..|++++..+|..|+.+|..+
T Consensus        18 ~~~~~~L~~~L~~~~--------~~vR~~A~~-~L~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~   77 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS--------YYVRRAAAY-ALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQI   77 (211)
T ss_dssp             GGGHHHHHHHTTCSS--------HHHHHHHHH-HHHHHC-----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHcCCC--------HHHHHHHHH-HHHHhC-----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence            567999999998766        458999999 777543           135789999999999999999999999888


Q ss_pred             HhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728          216 ISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLA  294 (401)
Q Consensus       216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~  294 (401)
                       ..              .+.++.|+.+|. +++.++..|+.+|.++..          .++++.|+++|.   +++..++
T Consensus        78 -~~--------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr  129 (211)
T 3ltm_A           78 -GD--------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVR  129 (211)
T ss_dssp             -CC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHH
T ss_pred             -CC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh---CCCHHHH
Confidence             31              256799999994 567799999999998853          368999999998   7888999


Q ss_pred             HHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728          295 AIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ  374 (401)
Q Consensus       295 ~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~  374 (401)
                      ..|+.+|..+.           +...++.|++ ++++.++.++..|+.+|..+..           ..+++.|..+++++
T Consensus       130 ~~a~~aL~~~~-----------~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~  186 (211)
T 3ltm_A          130 IAAAFALGEIG-----------DERAVEPLIK-ALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG  186 (211)
T ss_dssp             HHHHHHHHHHC-----------CGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcC-----------CHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC
Confidence            99999999874           4568899999 5788888999999999999842           23567788889887


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 015728          375 CSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       375 ~~~~~~~~A~~~L~~l~~  392 (401)
                       ++.+|..|...|..+..
T Consensus       187 -~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          187 -TGFARKVAVNYLETHKS  203 (211)
T ss_dssp             -CHHHHHHHHHHHHC---
T ss_pred             -CHHHHHHHHHHHHhcCC
Confidence             89999999999999887

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.30  E-value=5.8e-13  Score=106.66  Aligned_cols=68  Identities=18%  Similarity=0.333  Sum_probs=56.0

Q ss_pred             CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC-CcHHHHHHHHHHH
Q 015728            9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV-PNHTLRHLINQWL   76 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~-~n~~l~~~i~~~~   76 (401)
                      +.+++.||||.+.|.+|++++|||+||..|+.+|+..+...||.|+..+....+. ++..+..++..+.
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~   88 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLM   88 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence            4568899999999999999999999999999999997677899999998766543 4556666655443

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.30  E-value=1.2e-12  Score=93.31  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=47.7

Q ss_pred             Cccccccccc-ccCCc----eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCc
Q 015728           11 HLFRCPISLD-LFTDP----VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN   65 (401)
Q Consensus        11 ~~~~C~iC~~-~~~~P----v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n   65 (401)
                      +++.||||.+ ++.+|    +.++|||+||..|+.+|+..+...||.|+..+...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            4688999999 99999    4679999999999999988777889999999987766543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=6e-12  Score=95.43  Aligned_cols=57  Identities=28%  Similarity=0.542  Sum_probs=49.4

Q ss_pred             ccCCCCCCcccccccccccCC----ceEcCccccccHHhHHHHHHcC--CCCCCCCcccCCCC
Q 015728            4 DRQMTIPHLFRCPISLDLFTD----PVTLCTGQTYDRSSIEKWLAAG--NLTCPVTMQTLHDP   60 (401)
Q Consensus         4 ~~~~~~~~~~~C~iC~~~~~~----Pv~~~Cgh~fc~~Ci~~~~~~~--~~~CP~c~~~~~~~   60 (401)
                      .....+.+.+.|+||.+.|.+    |+.++|||+||..|+.+|+...  ...||.|+..+...
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A            7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            344557789999999999999    9999999999999999999864  57899999987654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.27  E-value=5e-13  Score=110.52  Aligned_cols=70  Identities=14%  Similarity=0.298  Sum_probs=57.4

Q ss_pred             CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC---------CCCCCcHHHHHHHHHHHH
Q 015728            8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD---------PSIVPNHTLRHLINQWLQ   77 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~---------~~~~~n~~l~~~i~~~~~   77 (401)
                      .+.++|.||||.++|.+|++++|||+||+.||.+|+..+...||.|+..+..         ..+.++..+.+.+.++.-
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v  105 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA  105 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEE
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccc
Confidence            4678899999999999999999999999999999998766789999986532         234577777777765443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.26  E-value=2e-12  Score=110.88  Aligned_cols=71  Identities=20%  Similarity=0.404  Sum_probs=62.1

Q ss_pred             CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHH
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWL   76 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~   76 (401)
                      ...++++|.||||.++|.+|++++|||+||..|+.+|+..+...||.|+..+....+.++..+.+.+.++.
T Consensus        12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~   82 (170)
T 3hcs_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM   82 (170)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred             ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence            34578899999999999999999999999999999999866668999999998877788888888777654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.25  E-value=3.8e-10  Score=98.82  Aligned_cols=185  Identities=14%  Similarity=0.151  Sum_probs=150.8

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      .+..+.++.+|.+++        +.++..|+. .|..+.           ..+.++.|+..|++++..+|..|+.+|..+
T Consensus        13 ~~~~~~~i~~L~~~~--------~~vr~~A~~-~L~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~   72 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDS--------YYVRRAAAY-ALGKIG-----------DERAVEPLIKALKDEDAWVRRAAADALGQI   72 (201)
T ss_dssp             HHHHHHHHHHTTCSC--------HHHHHHHHH-HHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHhcCCC--------HHHHHHHHH-HHHhcC-----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence            456889999999887        458999999 777543           135689999999999999999999999888


Q ss_pred             HhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728          216 ISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLA  294 (401)
Q Consensus       216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~  294 (401)
                       ..              .++++.|+.+|. +++.++..|+++|.++..          .++++.|+++|.   +++..++
T Consensus        73 -~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr  124 (201)
T 3ltj_A           73 -GD--------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVR  124 (201)
T ss_dssp             -CC--------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHH
T ss_pred             -CC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc---CCCHHHH
Confidence             31              246799999994 566799999999998753          358999999998   6888999


Q ss_pred             HHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcC
Q 015728          295 AIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ  374 (401)
Q Consensus       295 ~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~  374 (401)
                      ..|+.+|..+.           +.+.++.|++ ++++.++.++..|+.+|..+.  ++         .+++.|..+++++
T Consensus       125 ~~a~~aL~~~~-----------~~~~~~~L~~-~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~  181 (201)
T 3ltj_A          125 IAAAFALGEIG-----------DERAVEPLIK-ALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETG  181 (201)
T ss_dssp             HHHHHHHHHHT-----------CGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhC-----------CHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCC
Confidence            99999998874           4578899999 677888889999999999983  22         2567888888887


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 015728          375 CSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       375 ~~~~~~~~A~~~L~~l~~  392 (401)
                       ++.+|..|...|..+..
T Consensus       182 -~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          182 -TGFARKVAVNYLETHKS  198 (201)
T ss_dssp             -CHHHHHHHHHHHHHCC-
T ss_pred             -CHHHHHHHHHHHHHHHh
Confidence             89999999999987654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=7.2e-12  Score=87.00  Aligned_cols=48  Identities=21%  Similarity=0.609  Sum_probs=42.4

Q ss_pred             CCCCCCcccccccccccCCceEcCccccccHHhHHHHHHc--CCCCCCCC
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVT   53 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~--~~~~CP~c   53 (401)
                      ...+.+++.|+||++.+.+|+.++|||+||..|+.+|+..  +...||.|
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3446788999999999999999999999999999999764  56789987

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.22  E-value=4.6e-12  Score=91.92  Aligned_cols=57  Identities=19%  Similarity=0.380  Sum_probs=49.2

Q ss_pred             CCCCcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCc
Q 015728            8 TIPHLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN   65 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n   65 (401)
                      ...+++.|+||.+.+.+|       +.++|||+||..|+.+|+.. ...||.|+..+....+.++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence            356789999999999998       88999999999999999984 4689999999987766553

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=7.3e-12  Score=90.87  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=44.7

Q ss_pred             CCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728            9 IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ..+++.|+||++.+.+|+.++|||.||..|+.+|+. ....||.|+..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW-LGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTT-CSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHH-CCCcCcCcCchhCH
Confidence            456789999999999999999999999999999987 45789999988754

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.20  E-value=1.4e-09  Score=100.21  Aligned_cols=223  Identities=11%  Similarity=-0.006  Sum_probs=151.5

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      .+..|.+.|.+  +++..+..|+..|..+.           ..+.++.|+.+|.+++        +.++..|++ .|..+
T Consensus        24 ~i~~L~~~L~~--~~~~vr~~A~~~L~~~~-----------~~~~~~~L~~~l~d~~--------~~vR~~A~~-aL~~l   81 (280)
T 1oyz_A           24 NDDELFRLLDD--HNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKN--------YIRRDIGAF-ILGQI   81 (280)
T ss_dssp             CHHHHHHHTTC--SSHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHTCSS--------HHHHHHHHH-HHHHS
T ss_pred             hHHHHHHHHHc--CCHHHHHHHHHHHHccC-----------CchHHHHHHHHHcCCC--------HHHHHHHHH-HHHHh
Confidence            46677776753  46788899999998775           1346899999998776        458999999 88776


Q ss_pred             cCCchhhhhhcccCCchHHHHH-HhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHH
Q 015728          174 LVGETESLNLLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASD  251 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~  251 (401)
                      ........      ..++.|.. ++++++..+|..++.+|.++ .....  .      ....+++.|+.+|. ++..++.
T Consensus        82 ~~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l-~~~~~--~------~~~~~~~~L~~~l~d~~~~vR~  146 (280)
T 1oyz_A           82 KICKKCED------NVFNILNNMALNDKSACVRATAIESTAQR-CKKNP--I------YSPKIVEQSQITAFDKSTNVRR  146 (280)
T ss_dssp             CCCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHH-HHHCG--G------GHHHHHHHHHHHTTCSCHHHHH
T ss_pred             ccccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHH-hccCC--c------ccHHHHHHHHHHhhCCCHHHHH
Confidence            53221111      12334442 45677889999999999998 43210  0      01257889999884 5667899


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728          252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV  331 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~  331 (401)
                      .|+.+|.++..          .+++|.|+++|.   +++..++..|+.+|..+...         ...+++.|++ ++++
T Consensus       147 ~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~-~l~d  203 (280)
T 1oyz_A          147 ATAFAISVIND----------KATIPLLINLLK---DPNGDVRNWAAFAININKYD---------NSDIRDCFVE-MLQD  203 (280)
T ss_dssp             HHHHHHHTC-------------CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHH-HTTC
T ss_pred             HHHHHHHhcCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHhhccC---------cHHHHHHHHH-HhcC
Confidence            99999988753          358999999998   67788999999999887421         2346777888 5677


Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015728          332 SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLL  390 (401)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l  390 (401)
                      .++.++..|+.+|..+..           ..+++.|+.+++++ +  +|..|..+|..+
T Consensus       204 ~~~~vR~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i  248 (280)
T 1oyz_A          204 KNEEVRIEAIIGLSYRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGEL  248 (280)
T ss_dssp             SCHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhc
Confidence            777888888888877641           23555566665543 2  555555555544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.20  E-value=1.3e-09  Score=96.21  Aligned_cols=188  Identities=12%  Similarity=0.079  Sum_probs=148.8

Q ss_pred             ChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728           91 TIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ  170 (401)
Q Consensus        91 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L  170 (401)
                      +++.+..|.+.|.  +.+...+..|+..|..+..           .++++.|+.+|.+++        +.++..|+. .|
T Consensus        17 ~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~--------~~vr~~a~~-aL   74 (211)
T 3ltm_A           17 DPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED--------AWVRRAAAD-AL   74 (211)
T ss_dssp             CGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC--------HHHHHHHHH-HH
T ss_pred             CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC--------HHHHHHHHH-HH
Confidence            3567888888786  4578899999999887532           367999999998765        459999999 77


Q ss_pred             HhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchh
Q 015728          171 KLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEA  249 (401)
Q Consensus       171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~  249 (401)
                      ..+.           ..+.++.|+..|++++..+|..|+.+|..+ ..              .++++.|+.+|+ ++..+
T Consensus        75 ~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~-~~--------------~~~~~~L~~~l~d~~~~v  128 (211)
T 3ltm_A           75 GQIG-----------DERAVEPLIKALKDEDGWVRQSAAVALGQI-GD--------------ERAVEPLIKALKDEDWFV  128 (211)
T ss_dssp             HHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC--------------GGGHHHHHHHTTCSSHHH
T ss_pred             HhhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc--------------HHHHHHHHHHHhCCCHHH
Confidence            7653           235689999999999999999999999888 32              246799999994 56679


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728          250 SDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       250 ~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      +..|+.+|.++..          ..+++.|+++|.   +++..++..|+.+|..+.           ...+++.|.+ ++
T Consensus       129 r~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~-~l  183 (211)
T 3ltm_A          129 RIAAAFALGEIGD----------ERAVEPLIKALK---DEDGWVRQSAADALGEIG-----------GERVRAAMEK-LA  183 (211)
T ss_dssp             HHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-----------SHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHcCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC-----------chhHHHHHHH-HH
Confidence            9999999998853          358999999998   788899999999999884           3457788888 57


Q ss_pred             hcCChhHHHHHHHHHHHHhcCC
Q 015728          330 RVSDHEGSENAINSLMMICCDS  351 (401)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~~~~  351 (401)
                      +++++.++..|..+|..+....
T Consensus       184 ~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          184 ETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             HHCCHHHHHHHHHHHHC-----
T ss_pred             hCCCHHHHHHHHHHHHhcCCCC
Confidence            7788899999999999887654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.1e-11  Score=89.32  Aligned_cols=52  Identities=19%  Similarity=0.426  Sum_probs=45.7

Q ss_pred             CCCCCcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728            7 MTIPHLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ..+.+.+.|+||++.+.+|       +.++|||.||..|+.+|+.. ...||.|+..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            4467789999999999988       88999999999999999985 6789999988764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.17  E-value=2.2e-11  Score=89.60  Aligned_cols=55  Identities=15%  Similarity=0.211  Sum_probs=45.7

Q ss_pred             CCCCCcccccccccccC--CceEcC--ccccccHHhHHHHHHcCCCCCCCCcccCCCCC
Q 015728            7 MTIPHLFRCPISLDLFT--DPVTLC--TGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPS   61 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~--~Pv~~~--Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~   61 (401)
                      ..+.+++.||||.+.+.  ++...+  |||+||+.|+.+++..+...||.||+.+....
T Consensus         6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            34678999999999884  455555  99999999999998766788999999987653

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.16  E-value=7.8e-12  Score=87.38  Aligned_cols=54  Identities=22%  Similarity=0.282  Sum_probs=47.1

Q ss_pred             cccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcH
Q 015728           12 LFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNH   66 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~   66 (401)
                      .|.||||+++|.+||.+ +|||+||+.||++|+.. ..+||.++.++...++.++.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence            58999999999999999 89999999999999985 35699999999877776653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.15  E-value=3.2e-11  Score=89.15  Aligned_cols=58  Identities=21%  Similarity=0.408  Sum_probs=47.7

Q ss_pred             CCCCCcccccccccccCCc---eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCc
Q 015728            7 MTIPHLFRCPISLDLFTDP---VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPN   65 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~P---v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n   65 (401)
                      ....+++.|+||++.|.+|   +.++|||.||..|+.+|+. ....||.||..+....+.++
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCSCCC
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCCcccCCC
Confidence            3456789999999999876   3469999999999999997 55789999999877655543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.14  E-value=1.9e-09  Score=99.33  Aligned_cols=200  Identities=9%  Similarity=0.033  Sum_probs=151.7

Q ss_pred             HHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHH
Q 015728          133 LIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLV  212 (401)
Q Consensus       133 i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L  212 (401)
                      +.+.+.++.|+..|.+++        +.++..|++ .|..+.           ..+.++.|+.+|++++..+|..|+.+|
T Consensus        19 ~~~~~~i~~L~~~L~~~~--------~~vr~~A~~-~L~~~~-----------~~~~~~~L~~~l~d~~~~vR~~A~~aL   78 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN--------SLKRISSAR-VLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFIL   78 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS--------HHHHHHHHH-HHHHHC-----------CHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHcCC--------HHHHHHHHH-HHHccC-----------CchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            345778999999998766        458999999 888664           134688999999999999999999999


Q ss_pred             HHHHhcccchhhhhhhhccchHHHHHHHHH-c-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhcccc
Q 015728          213 EVIISSSHETKELCCKLGKDDRLLREIISL-V-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRE  290 (401)
Q Consensus       213 ~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~l-L-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~  290 (401)
                      ..+ ....   .   .+   ..+++.|... + +++..++..++++|.++......    ....+++.|+.+|.   +++
T Consensus        79 ~~l-~~~~---~---~~---~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~---d~~  141 (280)
T 1oyz_A           79 GQI-KICK---K---CE---DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAF---DKS  141 (280)
T ss_dssp             HHS-CCCT---T---TH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTT---CSC
T ss_pred             HHh-cccc---c---cc---hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhh---CCC
Confidence            888 5332   1   11   1345555543 3 45667999999999998742211    12346899999998   788


Q ss_pred             chHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728          291 RSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL  370 (401)
Q Consensus       291 ~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l  370 (401)
                      ..++..|+.+|..+.           +.++++.|++ ++++.++.++..|+.+|..+...++         .+++.|+.+
T Consensus       142 ~~vR~~a~~aL~~~~-----------~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~  200 (280)
T 1oyz_A          142 TNVRRATAFAISVIN-----------DKATIPLLIN-LLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEM  200 (280)
T ss_dssp             HHHHHHHHHHHHTC--------------CCHHHHHH-HHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-----------CHHHHHHHHH-HHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHH
Confidence            899999999998764           3468999999 5788888899999999999864433         356788899


Q ss_pred             hhcCCCHHHHHHHHHHHHHHH
Q 015728          371 LQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       371 l~~~~~~~~~~~A~~~L~~l~  391 (401)
                      ++++ ++.+|..|...|..+.
T Consensus       201 l~d~-~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          201 LQDK-NEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             TTCS-CHHHHHHHHHHHHHTT
T ss_pred             hcCC-CHHHHHHHHHHHHHhC
Confidence            9877 8999999999998765

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.14  E-value=4.7e-09  Score=91.76  Aligned_cols=187  Identities=12%  Similarity=0.079  Sum_probs=148.7

Q ss_pred             CCChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728           89 LATIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC  168 (401)
Q Consensus        89 ~~~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~  168 (401)
                      +..+.....+.+.|.+  .++..+..|+..|..+..           .+.++.|+.+|.+++        +.++..|+. 
T Consensus        10 ~~~~~~~~~~i~~L~~--~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~--------~~vr~~a~~-   67 (201)
T 3ltj_A           10 HTDPEKVEMYIKNLQD--DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED--------AWVRRAAAD-   67 (201)
T ss_dssp             CCCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS--------HHHHHHHHH-
T ss_pred             ccCCcchHHHHHHhcC--CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC--------HHHHHHHHH-
Confidence            4556777777777763  467899999999886542           357899999998765        458999998 


Q ss_pred             HHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCc
Q 015728          169 VQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNS  247 (401)
Q Consensus       169 ~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~  247 (401)
                      .|..+.           ....++.|+..|.+++..+|..|+.+|..+ ..              ..+++.|+.+|+ ++.
T Consensus        68 ~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~~--------------~~~~~~L~~~l~d~~~  121 (201)
T 3ltj_A           68 ALGQIG-----------DERAVEPLIKALKDEDGWVRQSAAVALGQI-GD--------------ERAVEPLIKALKDEDW  121 (201)
T ss_dssp             HHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH-CC--------------GGGHHHHHHHTTCSSH
T ss_pred             HHHhhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-Cc--------------HHHHHHHHHHHcCCCH
Confidence            777653           235689999999999999999999999888 32              246789999994 566


Q ss_pred             hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHH
Q 015728          248 EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKM  327 (401)
Q Consensus       248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~  327 (401)
                      .++..|+++|.++..          .++++.|+++|.   +++..++..|+.+|..+.           ...+++.|.+ 
T Consensus       122 ~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~-----------~~~~~~~L~~-  176 (201)
T 3ltj_A          122 FVRIAAAFALGEIGD----------ERAVEPLIKALK---DEDGWVRQSAADALGEIG-----------GERVRAAMEK-  176 (201)
T ss_dssp             HHHHHHHHHHHHHTC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-----------SHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCC----------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC-----------chhHHHHHHH-
Confidence            799999999998853          468999999998   678899999999999883           3457888888 


Q ss_pred             HHhcCChhHHHHHHHHHHHHh
Q 015728          328 VFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       328 l~~~~~~~~~~~a~~~L~~l~  348 (401)
                      ++++.++.++..|+.+|..+-
T Consensus       177 ~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          177 LAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHhCCCHHHHHHHHHHHHHHH
Confidence            567788889999999998763

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.12  E-value=1.3e-11  Score=87.52  Aligned_cols=53  Identities=21%  Similarity=0.471  Sum_probs=45.9

Q ss_pred             CcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC
Q 015728           11 HLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP   64 (401)
Q Consensus        11 ~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~   64 (401)
                      +++.|+||.+.+.+|       +.++|||.||..|+.+|+.. ...||.|+..+...++.+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~   61 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP   61 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceee
Confidence            468899999999988       78899999999999999985 678999999987765443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.07  E-value=2.5e-09  Score=111.27  Aligned_cols=197  Identities=12%  Similarity=0.108  Sum_probs=145.3

Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH-HHc-cCCchhHHHHHHHHHHhcC--C
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII-SLV-HHNSEASDAGVRAFSALCS--T  263 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv-~lL-~~~~~~~~~a~~aL~~Ls~--~  263 (401)
                      ..|.++++.|++++++.|..|+.+|.+| ..+.   +.+..+... |+|.+++ .+| +.+.+++.+|+++|+||+.  .
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l-~~~~---~~~~l~~~~-~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANI-VQDA---KCRKLLLRE-QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHH-TTSH---HHHHHHHHT-THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHH-HcCc---HHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            3577888999999999999999999999 6654   677777665 6666655 466 4677899999999999995  4


Q ss_pred             CchhHHHHhcCcHHHHHHHHHhhcc--------cc----------chHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHH
Q 015728          264 ETNRKTLVQEGAINGLIAYISNALT--------RE----------RSLAAIAMARIEQLLAI-ENSKDALINNPNGVYAL  324 (401)
Q Consensus       264 ~~n~~~iv~~G~v~~Lv~lL~~~~~--------~~----------~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~L  324 (401)
                      .+.+..+++.|++++|..+|.....        .+          .++.++++.+|.+||.. .+....+. ..++++.|
T Consensus       109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~-~~~~l~~l  187 (684)
T 4gmo_A          109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVA-TKQTILRL  187 (684)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-TCHHHHHH
T ss_pred             chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-hcccHHHH
Confidence            5678999999999999999863100        00          12445688899999964 44555665 78999999


Q ss_pred             HHHHHhcC--ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh--hcCCCHHHHHHHHHHHHHHH
Q 015728          325 VKMVFRVS--DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL--QSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       325 v~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll--~~~~~~~~~~~A~~~L~~l~  391 (401)
                      +..+....  .......|+.+|..++.++++..+.+...|....+..++  ..+ +...|..++++|..+.
T Consensus       188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            99765443  346888999999999999888887888877543322222  233 4445666777776654

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.04  E-value=4.8e-11  Score=82.12  Aligned_cols=47  Identities=17%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      .+++.|+||.+.|.+|++++|||+||..|+..    ....||.|+..+...
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence            46789999999999999999999999999976    356799999987643

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.03  E-value=3.2e-10  Score=81.59  Aligned_cols=52  Identities=19%  Similarity=0.443  Sum_probs=43.1

Q ss_pred             CCCCcccccccccccC---CceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728            8 TIPHLFRCPISLDLFT---DPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~---~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      ...++..|+||++.|.   .++.++|||.||..|+.+|+.. ...||.|+..+...
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ   64 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence            3556789999999884   4567899999999999999985 45799999987653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.02  E-value=1.5e-10  Score=83.12  Aligned_cols=48  Identities=25%  Similarity=0.463  Sum_probs=41.8

Q ss_pred             CcccccccccccCCc-eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           11 HLFRCPISLDLFTDP-VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        11 ~~~~C~iC~~~~~~P-v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ++..|+||.+.+.+| +.++|||.||..|+.+|+.. ...||.|+..+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            456899999999997 66899999999999999984 5789999988753

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.01  E-value=2.3e-10  Score=87.18  Aligned_cols=50  Identities=20%  Similarity=0.442  Sum_probs=43.5

Q ss_pred             CCCcccccccccccCC---ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728            9 IPHLFRCPISLDLFTD---PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~---Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ..++..|+||++.|.+   ++.++|||.||..|+..|+. ....||.|+..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCCC
Confidence            3467899999999887   77789999999999999998 56789999988764

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.01  E-value=2.1e-10  Score=78.59  Aligned_cols=47  Identities=26%  Similarity=0.427  Sum_probs=40.8

Q ss_pred             CcccccccccccCC----ceEcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           11 HLFRCPISLDLFTD----PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        11 ~~~~C~iC~~~~~~----Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      ++..|+||++.+.+    ++.++|||.||..|+.+|+... ..||.|+..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            46789999999866    7778999999999999999855 78999998764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.00  E-value=1.9e-10  Score=78.77  Aligned_cols=49  Identities=22%  Similarity=0.502  Sum_probs=42.2

Q ss_pred             CCCcccccccccccCC---ceEcC-ccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728            9 IPHLFRCPISLDLFTD---PVTLC-TGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~---Pv~~~-Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      +.++..|+||++.+.+   ++.++ |||.||..|+.+|+. ....||.||..+.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence            4567889999999988   77887 999999999999997 5678999998763

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=9.3e-11  Score=84.70  Aligned_cols=51  Identities=20%  Similarity=0.423  Sum_probs=45.4

Q ss_pred             CCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728            8 TIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      .+.+.+.|+||++.+.+ +.++|||.||..|+.+|+. ....||.||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence            45678999999999999 8899999999999999987 678899999988654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.9e-10  Score=82.32  Aligned_cols=52  Identities=19%  Similarity=0.386  Sum_probs=44.1

Q ss_pred             CCCCCcccccccccccCCceEc---CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728            7 MTIPHLFRCPISLDLFTDPVTL---CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~Pv~~---~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .++.++..|+||++.|.+|..+   +|||.||..|+.+|+.. ...||.|+..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence            3466788999999999877654   99999999999999985 4589999998754

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.98  E-value=1e-08  Score=109.45  Aligned_cols=282  Identities=11%  Similarity=0.118  Sum_probs=180.5

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhh--HHH--hcCChHHHHHHhccCCcccchhhhHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASN--CLI--QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSC  168 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~--~i~--~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~  168 (401)
                      +.+..+.+.+.+  ++...+..|+..|..++...+..-.  .+.  -.+.+|.|+.++.+.+        .+++..|+. 
T Consensus       128 ~ll~~L~~~l~~--~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--------~~vR~~A~~-  196 (852)
T 4fdd_A          128 DLLPKLCSLLDS--EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS--------PKIRSHAVA-  196 (852)
T ss_dssp             THHHHHHHHHSC--SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS--------HHHHHHHHH-
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC--------HHHHHHHHH-
Confidence            456666665653  3567889999999999976543211  000  1235677777776554        569999999 


Q ss_pred             HHHhhcCCchhh-hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CC
Q 015728          169 VQKLLLVGETES-LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HN  246 (401)
Q Consensus       169 ~L~~l~~~~~~~-~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~  246 (401)
                      .+..+....... ...+  ...++.+...+.+++.++|..++.+|..+ ..... +.....+   .++++.++.+++ .+
T Consensus       197 aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l-~~~~~-~~~~~~l---~~l~~~l~~~~~~~~  269 (852)
T 4fdd_A          197 CVNQFIISRTQALMLHI--DSFIENLFALAGDEEPEVRKNVCRALVML-LEVRM-DRLLPHM---HNIVEYMLQRTQDQD  269 (852)
T ss_dssp             HHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHH-HHHCH-HHHGGGH---HHHHHHHHHHHTCSS
T ss_pred             HHHHHHhcccHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHhCH-HHHHHHH---HHHHHHHHHHccCCc
Confidence            777665433221 1111  24678888888888999999999999999 43321 1222222   357777777774 45


Q ss_pred             chhHHHHHHHHHHhcCCCchhHH-------------------------------------------------------HH
Q 015728          247 SEASDAGVRAFSALCSTETNRKT-------------------------------------------------------LV  271 (401)
Q Consensus       247 ~~~~~~a~~aL~~Ls~~~~n~~~-------------------------------------------------------iv  271 (401)
                      ..++..|+.++..++.....+..                                                       +.
T Consensus       270 ~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la  349 (852)
T 4fdd_A          270 ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA  349 (852)
T ss_dssp             HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence            56888888888877643211110                                                       00


Q ss_pred             ---hcC----cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728          272 ---QEG----AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL  344 (401)
Q Consensus       272 ---~~G----~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L  344 (401)
                         ...    ++|.+.+++.   +.+..+++.|+.+|..++........-. -.+.++.++. ++++.++.++..|+.+|
T Consensus       350 ~~~~~~~~~~l~~~l~~~l~---~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~-~l~d~~~~Vr~~a~~~l  424 (852)
T 4fdd_A          350 NVYRDELLPHILPLLKELLF---HHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQ-CLSDKKALVRSITCWTL  424 (852)
T ss_dssp             HHHGGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHH-HTTCSSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence               011    2333333444   4567788888888888886543322111 2357788888 56778889999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          345 MMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       345 ~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      .+++...+.......-.+.++.|+..++++ ++.+|+.|.++|..+.+..+.++
T Consensus       425 ~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l  477 (852)
T 4fdd_A          425 SRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTEL  477 (852)
T ss_dssp             HHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhh
Confidence            998864221111122346778888888777 89999999999999998666554

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=3e-10  Score=83.19  Aligned_cols=49  Identities=22%  Similarity=0.434  Sum_probs=42.7

Q ss_pred             CCcccccccccccCCc---eEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           10 PHLFRCPISLDLFTDP---VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~P---v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .++..|+||++.|.++   +.++|||.||..|+.+|+.. ...||.||..+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            4578899999999887   66899999999999999984 5689999988764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.95  E-value=2e-10  Score=93.98  Aligned_cols=53  Identities=19%  Similarity=0.400  Sum_probs=46.5

Q ss_pred             CCcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC
Q 015728           10 PHLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV   63 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~   63 (401)
                      .+++.|+||++.|.+|       +.++|||+||..||.+|+. ....||.|+..+....+.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~l~   64 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYH   64 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTTTCEE
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcccccc
Confidence            4678999999999999       8899999999999999998 556899999998765443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.90  E-value=1.9e-08  Score=104.64  Aligned_cols=196  Identities=12%  Similarity=0.096  Sum_probs=140.8

Q ss_pred             ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH-HhhcCCHHHHHHHHHHHHHHH
Q 015728          138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVII  216 (401)
Q Consensus       138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~  216 (401)
                      .|.++++.|+|++..        .+..|++ +|.+|+.+ ...++.+...|+|..++. +|...+.++++.|+.+|.+| 
T Consensus        35 ~i~Pll~~L~S~~~~--------~r~~A~~-al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL-  103 (684)
T 4gmo_A           35 KILPVLKDLKSPDAK--------SRTTAAG-AIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL-  103 (684)
T ss_dssp             TTHHHHHHHSSSCCS--------HHHHHHH-HHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHcCCCCHH--------HHHHHHH-HHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH-
Confidence            466677889988865        8999999 99999964 455556657788887665 67778999999999999999 


Q ss_pred             hcccchhhhhhhhccchHHHHHHHHHccCC----------------------chhHHHHHHHHHHhcC-CCchhHHHHhc
Q 015728          217 SSSHETKELCCKLGKDDRLLREIISLVHHN----------------------SEASDAGVRAFSALCS-TETNRKTLVQE  273 (401)
Q Consensus       217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~----------------------~~~~~~a~~aL~~Ls~-~~~n~~~iv~~  273 (401)
                      +... ..+.+..+... |++++|..+|+..                      .....++..+|++||. .++....+.+.
T Consensus       104 ~~~~-g~d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~  181 (684)
T 4gmo_A          104 AQEE-EADFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK  181 (684)
T ss_dssp             HHHS-CHHHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC
T ss_pred             Hhhc-CchHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            6553 23777777775 8999999988210                      0133467889999995 55567788899


Q ss_pred             CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcH---HHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGV---YALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i---~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                      |+++.|+.+|.+......+++..|+.+|+.|+.+...-...+.+.|..   ..+.. +.+..+ ..+..++.+|.|+.
T Consensus       182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~-~~~~~~-~~~~la~giL~Ni~  257 (684)
T 4gmo_A          182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK-LATGTD-PRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH-HHHSSC-TTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH-HhcCCc-HHHHHHHHHHHhHh
Confidence            999999999964212345789999999999998755444433355532   23333 334444 45667888999874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.89  E-value=4.4e-08  Score=104.48  Aligned_cols=266  Identities=15%  Similarity=0.133  Sum_probs=175.3

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhh--hh
Q 015728          106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESL--NL  183 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~--~~  183 (401)
                      +.++..|..+...+..+++.+....    -.+.++.|+..+.+++.        .+++.++. +|..++.+.....  ..
T Consensus       101 ~~~~~vr~~~a~~i~~ia~~~~~~~----wp~ll~~L~~~l~~~~~--------~~r~~al~-~L~~i~~~~~~~~~~~~  167 (852)
T 4fdd_A          101 DSSPLIRATVGILITTIASKGELQN----WPDLLPKLCSLLDSEDY--------NTCEGAFG-ALQKICEDSAEILDSDV  167 (852)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTTTT----CTTHHHHHHHHHSCSSH--------HHHHHHHH-HHHHHHHHHTTHHHHCS
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccc----cHHHHHHHHHHHcCCCH--------HHHHHHHH-HHHHHHHHhHHHhchhh
Confidence            3466789999999999998763221    14579999999988763        48888888 7777763222111  01


Q ss_pred             cc--cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHh
Q 015728          184 LN--EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSAL  260 (401)
Q Consensus       184 v~--~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~L  260 (401)
                      +.  -...++.++..+++.+.++|..|+.+|..+ ..... +....   ...++++.|..++. ++..+++.|.++|.+|
T Consensus       168 ~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~-~~~~~-~~~~~---~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l  242 (852)
T 4fdd_A          168 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF-IISRT-QALML---HIDSFIENLFALAGDEEPEVRKNVCRALVML  242 (852)
T ss_dssp             SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTT-TTTTC-HHHHT---SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-Hhccc-HHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            10  123577777888888999999999999887 33221 11111   22367888888884 5667999999999999


Q ss_pred             cCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHH-------H-----------------
Q 015728          261 CSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDAL-------I-----------------  315 (401)
Q Consensus       261 s~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~-------~-----------------  315 (401)
                      +.... .-...+ .+.++.++.++.   +.++.++..|+..+..++.....+..+       +                 
T Consensus       243 ~~~~~~~~~~~l-~~l~~~l~~~~~---~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~  318 (852)
T 4fdd_A          243 LEVRMDRLLPHM-HNIVEYMLQRTQ---DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL  318 (852)
T ss_dssp             HHHCHHHHGGGH-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHhCHHHHHHHH-HHHHHHHHHHcc---CCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence            85332 111111 247777887777   567778888888888777532111100       0                 


Q ss_pred             -hC--------------------------------C----CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHH
Q 015728          316 -NN--------------------------------P----NGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEA  358 (401)
Q Consensus       316 -~~--------------------------------~----g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  358 (401)
                       .+                                .    ..++.+.+ ++++.+...++.|+.+|.+++....+... -
T Consensus       319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~-~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~  396 (852)
T 4fdd_A          319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKE-LLFHHEWVVKESGILVLGAIAEGCMQGMI-P  396 (852)
T ss_dssp             HC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH-HHTCSSHHHHHHHHHHHHHTTTTTHHHHG-G
T ss_pred             cCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcchHHHH-H
Confidence             00                                0    12333333 34556677888888888888876543221 2


Q ss_pred             HHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          359 ICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       359 ~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      .-.+.++.|+.++++. ++.+|..|.+.|..+.+..++
T Consensus       397 ~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~  433 (852)
T 4fdd_A          397 YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVS  433 (852)
T ss_dssp             GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcc
Confidence            3456788999999777 999999999999999986554

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.88  E-value=1.3e-09  Score=86.74  Aligned_cols=49  Identities=12%  Similarity=0.220  Sum_probs=41.5

Q ss_pred             CcccccccccccCCce------------------EcCccccccHHhHHHHHHc----CCCCCCCCcccCCC
Q 015728           11 HLFRCPISLDLFTDPV------------------TLCTGQTYDRSSIEKWLAA----GNLTCPVTMQTLHD   59 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv------------------~~~Cgh~fc~~Ci~~~~~~----~~~~CP~c~~~~~~   59 (401)
                      ++..|+||++.|.+|.                  .++|||.||..||..|+..    ....||.||..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4568999999998765                  6789999999999999963    46789999988754

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.85  E-value=5.8e-10  Score=81.37  Aligned_cols=45  Identities=18%  Similarity=0.174  Sum_probs=40.4

Q ss_pred             CCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .+++.|+||++.+.+|+.++|||. ||..|+..|     ..||.||..+..
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            457899999999999999999999 999999877     579999998764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.80  E-value=8.2e-08  Score=94.26  Aligned_cols=287  Identities=11%  Similarity=0.066  Sum_probs=180.3

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcC-chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES-PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      +.+..+.+.+.+.+++...+..|+..|..++... +..-... -...++.++.+|.+....      ..++..|+. ++.
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~------~~vr~~a~~-~l~  199 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPS------NNVKLAATN-ALL  199 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCC------HHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCC------HHHHHHHHH-HHH
Confidence            4566666666532115788999999999999764 2111111 134688888988776311      568999999 666


Q ss_pred             hhcCC-chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchh
Q 015728          172 LLLVG-ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEA  249 (401)
Q Consensus       172 ~l~~~-~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~  249 (401)
                      .+... .++........-.++.+...+.+++.+++..++.+|..+.....  +.....+..  ++++.++..+ +.+..+
T Consensus       200 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~~~~--~l~~~~~~~~~~~~~~v  275 (462)
T 1ibr_B          200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGP--ALFAITIEAMKSDIDEV  275 (462)
T ss_dssp             HHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG--GGCTTTTTT--THHHHHHHHHHCSSHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHcCCchHH
Confidence            54321 11111000001125556666777888999999999999933222  122333321  5778777777 445668


Q ss_pred             HHHHHHHHHHhcCCCc------------------hhHHHHh---cCcHHHHHHHHHhh----ccccchHHHHHHHHHHHH
Q 015728          250 SDAGVRAFSALCSTET------------------NRKTLVQ---EGAINGLIAYISNA----LTRERSLAAIAMARIEQL  304 (401)
Q Consensus       250 ~~~a~~aL~~Ls~~~~------------------n~~~iv~---~G~v~~Lv~lL~~~----~~~~~~~~~~a~~~L~~L  304 (401)
                      +..|..++..++....                  ....+++   ...+|.+++.|...    .+.+..++..|..+|..|
T Consensus       276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l  355 (462)
T 1ibr_B          276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence            9999999888875421                  0111221   33667777777521    012336788899999988


Q ss_pred             hCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHH
Q 015728          305 LAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKA  383 (401)
Q Consensus       305 a~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A  383 (401)
                      +..-..  .+.  ...++.+.+ .+++.+...++.|+.+|..++.+.. +.... .-..+++.|+.+++++ .+.+|..|
T Consensus       356 ~~~~~~--~~~--~~~~~~l~~-~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~-~~~Vr~~a  428 (462)
T 1ibr_B          356 ATCCED--DIV--PHVLPFIKE-HIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTA  428 (462)
T ss_dssp             HHHTTT--THH--HHHHHHHHH-HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHH
T ss_pred             HHhccH--HHH--HHHHHHHHH-HhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHH
Confidence            853221  221  134555666 5667788899999999999987532 11111 1257889999999887 89999999


Q ss_pred             HHHHHHHHHhhHHhh
Q 015728          384 RMLLKLLRSKWAEEL  398 (401)
Q Consensus       384 ~~~L~~l~~~~~e~~  398 (401)
                      .++|..+.+..+.++
T Consensus       429 ~~~l~~~~~~~~~~~  443 (462)
T 1ibr_B          429 AWTVGRICELLPEAA  443 (462)
T ss_dssp             HHHHHHHHHHGGGGC
T ss_pred             HHHHHHHHHhccccc
Confidence            999999999766543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.76  E-value=4.2e-09  Score=99.98  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=44.2

Q ss_pred             cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728           12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      ...|+||.+.+.+|+.++|||.||..|+..|+..+...||.||..+...
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            4799999999999999999999999999999986677899999987653

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.76  E-value=3.7e-07  Score=92.48  Aligned_cols=268  Identities=11%  Similarity=0.113  Sum_probs=178.4

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..+..+..++.  +.+...+..|...|.+++...+..  . ...-.+|.+..+..+.+        ..++..|+. ++..
T Consensus        87 ~ll~~L~~l~~--~~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~--------~~~R~~a~~-~l~~  152 (588)
T 1b3u_A           87 CLLPPLESLAT--VEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDW--------FTSRTSACG-LFSV  152 (588)
T ss_dssp             GGHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSS--------HHHHHHHGG-GHHH
T ss_pred             HHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCCC--------cHHHHHHHH-HHHH
Confidence            34555544332  346789999999999999876542  1 12334677777666554        347777777 7777


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASD  251 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~  251 (401)
                      +...-...   . ....++.+..++++++..+|..|+.+|..+ .....  .  ... . ..++|.|..++. ++..++.
T Consensus       153 ~~~~~~~~---~-~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l-~~~~~--~--~~~-~-~~l~~~l~~~~~d~~~~vr~  221 (588)
T 1b3u_A          153 CYPRVSSA---V-KAELRQYFRNLCSDDTPMVRRAAASKLGEF-AKVLE--L--DNV-K-SEIIPMFSNLASDEQDSVRL  221 (588)
T ss_dssp             HTTTSCHH---H-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-HHTSC--H--HHH-H-HTHHHHHHHHHTCSCHHHHT
T ss_pred             HHHhcCHH---H-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHhc--H--HhH-H-HHHHHHHHHHhcCCcHHHHH
Confidence            66332211   1 123577777888888999999999999999 54321  1  111 1 257788888884 4556899


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728          252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV  331 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~  331 (401)
                      .|+.+|..++..-+..  .....++|.+..++.   +.+..++..++.+|..++...... .+  ....++.+++ ++++
T Consensus       222 ~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~l~~~l~~-~l~d  292 (588)
T 1b3u_A          222 LAVEACVNIAQLLPQE--DLEALVMPTLRQAAE---DKSWRVRYMVADKFTELQKAVGPE-IT--KTDLVPAFQN-LMKD  292 (588)
T ss_dssp             THHHHHHHHHHHSCHH--HHHHHTHHHHHHHHT---CSSHHHHHHHHHTHHHHHHHHCHH-HH--HHTHHHHHHH-HHTC
T ss_pred             HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHhCcc-cc--hhHHHHHHHH-HhCC
Confidence            9999999988532221  223447888888887   677889999999999988532111 11  2246888888 5777


Q ss_pred             CChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728          332 SDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  395 (401)
                      .++.++..|+.+|..++...+ +.+........++.+..++++. +..+|..|.+.|..+.+..+
T Consensus       293 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~  356 (588)
T 1b3u_A          293 CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSPILG  356 (588)
T ss_dssp             SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHHC
T ss_pred             CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence            888899999999999886532 2121233445667777777666 77888888777777665443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.76  E-value=4.9e-07  Score=91.54  Aligned_cols=215  Identities=11%  Similarity=0.047  Sum_probs=142.8

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      +.++..|..|+..|..++......   ......+|.|..++.+.+        ..++..|+. .|..++..-+. . .. 
T Consensus       175 d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~--------~~vr~~a~~-~l~~l~~~~~~-~-~~-  239 (588)
T 1b3u_A          175 DDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQ--------DSVRLLAVE-ACVNIAQLLPQ-E-DL-  239 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSC--------HHHHTTHHH-HHHHHHHHSCH-H-HH-
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCc--------HHHHHHHHH-HHHHHHHhCCH-H-HH-
Confidence            356888999999999998765432   223567889999887765        348888888 66665522111 0 11 


Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCC
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTE  264 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~  264 (401)
                      ....+|.+..++++.+..+|..++.+|..+ .....  .  ..+ . ..+++.++.+++ ++..++..|+.+|..++..-
T Consensus       240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l-~~~~~--~--~~~-~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          240 EALVMPTLRQAAEDKSWRVRYMVADKFTEL-QKAVG--P--EIT-K-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             HHHTHHHHHHHHTCSSHHHHHHHHHTHHHH-HHHHC--H--HHH-H-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHH-HHHhC--c--ccc-h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence            123577788888888899999999999999 43210  1  111 1 246889999995 45679999999999988432


Q ss_pred             c--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHH
Q 015728          265 T--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAIN  342 (401)
Q Consensus       265 ~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~  342 (401)
                      .  .+....-...+|.+..++.   +.+..++..++.+|..++..-... ..  ....+|.+.. ++++.++.++..++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~---d~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~l~p~l~~-~l~d~~~~Vr~~a~~  385 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVS---DANQHVKSALASVIMGLSPILGKD-NT--IEHLLPLFLA-QLKDECPEVRLNIIS  385 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHT---CSCHHHHHHHHTTGGGGHHHHCHH-HH--HHHTHHHHHH-HHTCSCHHHHHHHHT
T ss_pred             ChhhhhhHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHhhHh-HH--HHHHHHHHHH-HhCCCchHHHHHHHH
Confidence            2  2222233467888888888   677888888888888877432111 11  1235666777 466666677777777


Q ss_pred             HHHHHhc
Q 015728          343 SLMMICC  349 (401)
Q Consensus       343 ~L~~l~~  349 (401)
                      +|..++.
T Consensus       386 ~l~~l~~  392 (588)
T 1b3u_A          386 NLDCVNE  392 (588)
T ss_dssp             TCHHHHH
T ss_pred             HHHHHHH
Confidence            7766654

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=98.74  E-value=3.8e-09  Score=110.06  Aligned_cols=75  Identities=27%  Similarity=0.360  Sum_probs=68.8

Q ss_pred             CCCCCCcccccccccccCCceEcCcc-ccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728            6 QMTIPHLFRCPISLDLFTDPVTLCTG-QTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG   81 (401)
Q Consensus         6 ~~~~~~~~~C~iC~~~~~~Pv~~~Cg-h~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~   81 (401)
                      ..++|++|.|||..++|+|||+++.| +||.+.+|++|+.. ..+||..+.+++...+.||..++..|+.|+..++.
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999998 69999999999985 67899999999988999999999999999987743

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=4e-09  Score=77.07  Aligned_cols=45  Identities=18%  Similarity=0.177  Sum_probs=39.4

Q ss_pred             CCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .+++.|+||++.+.+|+.++|||. ||..|+.+     ...||.||..+..
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence            456789999999999999999999 99999964     3679999998865

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.68  E-value=2.7e-09  Score=81.72  Aligned_cols=46  Identities=11%  Similarity=0.252  Sum_probs=39.3

Q ss_pred             CcccccccccccCCceEc---CccccccHHhHHHHHHc----C---CCCCCC--Cccc
Q 015728           11 HLFRCPISLDLFTDPVTL---CTGQTYDRSSIEKWLAA----G---NLTCPV--TMQT   56 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~---~Cgh~fc~~Ci~~~~~~----~---~~~CP~--c~~~   56 (401)
                      +.+.|+||.+.+.+|+.+   +|||.||..|+..|+..    +   ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            578999999999998764   69999999999999874    2   357999  9887

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.68  E-value=3.1e-09  Score=86.70  Aligned_cols=54  Identities=20%  Similarity=0.440  Sum_probs=46.3

Q ss_pred             CCcccccccccccCCc-------eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCC
Q 015728           10 PHLFRCPISLDLFTDP-------VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP   64 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~P-------v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~   64 (401)
                      .+.+.|+||++.+.+|       +.++|||.||..|+.+|+. ..++||.|+..+..+++.+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~  130 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-NANTCPTCRKKINHKRYHP  130 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH-HCSBCTTTCCBCCGGGEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH-cCCCCCCCCCcCChhccee
Confidence            4678999999999887       8889999999999999998 4568999999987655443

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=1e-08  Score=76.08  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=39.8

Q ss_pred             CcccccccccccCC--------------ceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           11 HLFRCPISLDLFTD--------------PVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        11 ~~~~C~iC~~~~~~--------------Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ++-.|+||++.|.+              ++.+ +|||.|+..||.+|+. ...+||.||..+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence            45679999999977              4455 5999999999999998 45689999988754

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.65  E-value=2e-08  Score=70.84  Aligned_cols=48  Identities=21%  Similarity=0.224  Sum_probs=42.3

Q ss_pred             CCcccccccccccCCceEc--Ccccc-ccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           10 PHLFRCPISLDLFTDPVTL--CTGQT-YDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~--~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      .++..|+||++.+.+++.+  +|||. ||..|+.+|+. ....||.||..+.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence            4567899999999999987  99999 89999999987 5678999999875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.61  E-value=5.5e-07  Score=92.08  Aligned_cols=266  Identities=11%  Similarity=0.120  Sum_probs=177.9

Q ss_pred             HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc
Q 015728           98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE  177 (401)
Q Consensus        98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~  177 (401)
                      +.++|.  +.++..|..|+..+.++.+.+++   .+.+.|.++.|..+|.+.+        +.++..|+. +|..++.++
T Consensus       126 l~~~L~--d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d--------~~V~~~A~~-aL~~i~~~~  191 (591)
T 2vgl_B          126 LRKCLK--DEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSN--------PMVVANAVA-ALSEISESH  191 (591)
T ss_dssp             HHHHSS--CSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSC--------HHHHHHHHH-HHHHHTTSC
T ss_pred             HHHHcC--CCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCC--------hhHHHHHHH-HHHHHHhhC
Confidence            555554  45788999999999999987764   3334678999999998766        459999999 888887654


Q ss_pred             hhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHH
Q 015728          178 TESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRA  256 (401)
Q Consensus       178 ~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~a  256 (401)
                      .+........+.+..|+..+...++-.+.....+|..+ ...+   +  ..   ...+++.+..+|+ .+..++..|+++
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l-~~~~---~--~~---~~~~l~~l~~~l~~~~~~V~~ea~~~  262 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY-NPKD---D--RE---AQSICERVTPRLSHANSAVVLSAVKV  262 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS-CCCS---H--HH---HHHHHHHHTTCSCSSTTHHHHHHHHH
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh-CCCC---h--HH---HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            33211111234577888888888888887777777666 4322   1  11   1357788888884 567799999999


Q ss_pred             HHHhcC----CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-Hh------------------h-HH
Q 015728          257 FSALCS----TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-EN------------------S-KD  312 (401)
Q Consensus       257 L~~Ls~----~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~------------------~-~~  312 (401)
                      +.++..    +++....++ ..++++|+.++.    ++..++-.|+.+|..++.. ++                  - +.
T Consensus       263 i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~----~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~  337 (591)
T 2vgl_B          263 LMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS----GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLE  337 (591)
T ss_dssp             HHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT----SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHH
T ss_pred             HHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc----CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHH
Confidence            999974    233333332 346788887655    4567888888888887741 10                  1 11


Q ss_pred             HH-----HhCCCcHHHHHHHH---HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHH
Q 015728          313 AL-----INNPNGVYALVKMV---FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKAR  384 (401)
Q Consensus       313 ~~-----~~~~g~i~~Lv~~l---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~  384 (401)
                      ++     +.+...+..++..|   +++.+...+..++.++..++...+...     ...++.|+.++... .+.++..+.
T Consensus       338 al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~-~~~v~~e~i  411 (591)
T 2vgl_B          338 KLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTK-VNYVVQEAI  411 (591)
T ss_dssp             HHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred             HHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHccc-chHHHHHHH
Confidence            11     12334445444433   345567788889999999887764322     34678999999877 677777777


Q ss_pred             HHHHHHHHhhHHh
Q 015728          385 MLLKLLRSKWAEE  397 (401)
Q Consensus       385 ~~L~~l~~~~~e~  397 (401)
                      ..++.+-+.+|+.
T Consensus       412 ~~l~~ii~~~p~~  424 (591)
T 2vgl_B          412 VVIRDIFRKYPNK  424 (591)
T ss_dssp             HHHHHHHHHSCSS
T ss_pred             HHHHHHHHHCcch
Confidence            7777776656653

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.58  E-value=3.4e-08  Score=69.42  Aligned_cols=47  Identities=15%  Similarity=0.227  Sum_probs=41.2

Q ss_pred             CcccccccccccCCceEc--Ccccc-ccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           11 HLFRCPISLDLFTDPVTL--CTGQT-YDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~--~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      ....|+||++.+.+++.+  +|||. ||..|..+|+. ....||.||.++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK-AGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH-TTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH-hCCcCCCcCchhh
Confidence            356899999999999887  99998 99999999987 4578999999875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.55  E-value=4.8e-08  Score=76.04  Aligned_cols=47  Identities=19%  Similarity=0.384  Sum_probs=39.6

Q ss_pred             CcccccccccccCCc-----------------e-EcCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           11 HLFRCPISLDLFTDP-----------------V-TLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        11 ~~~~C~iC~~~~~~P-----------------v-~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      ++-.|+||++.|.++                 + .++|+|.|+..||.+|+. ...+||.||..+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence            346799999998876                 3 368999999999999998 5778999998864

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.54  E-value=9.1e-07  Score=90.45  Aligned_cols=261  Identities=12%  Similarity=0.073  Sum_probs=174.4

Q ss_pred             HHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC
Q 015728           96 STLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV  175 (401)
Q Consensus        96 ~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~  175 (401)
                      ..+.+++.  +.+.+.|+.+...+..++..+++..     .-++..|.+-|.+++        +.++..|+. .|.++. 
T Consensus        52 ~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n--------~~ir~~AL~-~L~~i~-  114 (591)
T 2vgl_B           52 PDVVNCMQ--TDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPN--------PLIRALAVR-TMGCIR-  114 (591)
T ss_dssp             HHHHHTTS--SSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSS--------HHHHHHHHH-HHHTCC-
T ss_pred             HHHHHHhC--CCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCC--------HHHHHHHHH-HHHcCC-
Confidence            33444443  3457788888888888887655332     123566667677655        458888888 777765 


Q ss_pred             CchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHH
Q 015728          176 GETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGV  254 (401)
Q Consensus       176 ~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~  254 (401)
                       ..+..     ...++.+..+|.+.++.+|..|+.++.++ ....+  +   .+.. .++++.|..+|. .++.++.+|+
T Consensus       115 -~~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i-~~~~p--~---~~~~-~~~~~~l~~lL~d~d~~V~~~A~  181 (591)
T 2vgl_B          115 -VDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKL-HDINA--Q---MVED-QGFLDSLRDLIADSNPMVVANAV  181 (591)
T ss_dssp             -SGGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHH-HHSSC--C---CHHH-HHHHHHHHHTTSCSCHHHHHHHH
T ss_pred             -hHHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHH-HhhCh--h---hccc-ccHHHHHHHHhCCCChhHHHHHH
Confidence             22221     23477889999999999999999999999 44321  2   2212 378899999995 5667999999


Q ss_pred             HHHHHhcCCCchh-HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC
Q 015728          255 RAFSALCSTETNR-KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD  333 (401)
Q Consensus       255 ~aL~~Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~  333 (401)
                      .+|..++...... ..-...+.++.|+..+.   +.++-.+...+.+|..++..+...  .   ...++.+.. ++++.+
T Consensus       182 ~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~---~~~~~~q~~il~~l~~l~~~~~~~--~---~~~l~~l~~-~l~~~~  252 (591)
T 2vgl_B          182 AALSEISESHPNSNLLDLNPQNINKLLTALN---ECTEWGQIFILDCLSNYNPKDDRE--A---QSICERVTP-RLSHAN  252 (591)
T ss_dssp             HHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH---HCCHHHHHHHHHHHHTSCCCSHHH--H---HHHHHHHTT-CSCSST
T ss_pred             HHHHHHHhhCCCccchhccHHHHHHHHHcCC---CCCchHHHHHHHHHHHhCCCChHH--H---HHHHHHHHH-HHcCCC
Confidence            9999999654322 11122346777888887   456667777788887776432211  1   134556666 466777


Q ss_pred             hhHHHHHHHHHHHHhcC---CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          334 HEGSENAINSLMMICCD---SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       334 ~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      +.+...|++++..+...   +++..+. +-..+.+.|+.++. + ++..|..|...|..+.+..|+-+
T Consensus       253 ~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~  317 (591)
T 2vgl_B          253 SAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEIL  317 (591)
T ss_dssp             THHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTT
T ss_pred             hHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHH
Confidence            78999999999998642   2232222 23455678887763 4 88999999999999988666543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.53  E-value=7.3e-06  Score=84.19  Aligned_cols=258  Identities=13%  Similarity=0.032  Sum_probs=168.7

Q ss_pred             HHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC
Q 015728           97 TLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG  176 (401)
Q Consensus        97 ~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~  176 (401)
                      -+++.+++.  +...|..++.+|-.+.......      ..+.+..++++.+.+..        .+.-..- .+..+...
T Consensus        38 ~ir~~l~~~--~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~--------~Krl~Yl-~~~~~~~~  100 (618)
T 1w63_A           38 AIRSSFREE--DNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFT--------DKRIGYL-GAMLLLDE  100 (618)
T ss_dssp             HHHHHHTTT--CTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHH--------HHHHHHH-HHHHHCCC
T ss_pred             HHHHHhhCC--CHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchH--------HHHHHHH-HHHHHhCC
Confidence            334445443  3456777777777766554321      22455666777765532        3333333 34444433


Q ss_pred             chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHH
Q 015728          177 ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVR  255 (401)
Q Consensus       177 ~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~  255 (401)
                      +++.. ++    .+..+.+-|+++++..|..|..+|.++ ...    +    +.  ..+++.+..+| +.++.+++.|+.
T Consensus       101 ~~e~~-~l----~in~l~kDL~~~n~~vr~lAL~~L~~i-~~~----~----~~--~~l~~~l~~~L~~~~~~VRk~A~~  164 (618)
T 1w63_A          101 RQDVH-LL----MTNCIKNDLNHSTQFVQGLALCTLGCM-GSS----E----MC--RDLAGEVEKLLKTSNSYLRKKAAL  164 (618)
T ss_dssp             CHHHH-HH----HHHHHHHHHSCSSSHHHHHHHHHHHHH-CCH----H----HH--HHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             CcHHH-HH----HHHHHHHhcCCCCHhHHHHHHHHHHhc-CCH----H----HH--HHHHHHHHHHHcCCCHHHHHHHHH
Confidence            33322 22    377788888999999999999999999 521    2    22  35678888888 556679999999


Q ss_pred             HHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh----
Q 015728          256 AFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR----  330 (401)
Q Consensus       256 aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~----  330 (401)
                      ++.++.. +++.    ++ +.++.+.++|.   +.+..++..|+.+|..++...........  ..++.+++.|.+    
T Consensus       165 al~~l~~~~p~~----v~-~~~~~l~~lL~---D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~  234 (618)
T 1w63_A          165 CAVHVIRKVPEL----ME-MFLPATKNLLN---EKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMS  234 (618)
T ss_dssp             HHHHHHHHCGGG----GG-GGGGGTTTSTT---CCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHChHH----HH-HHHHHHHHHhC---CCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcC
Confidence            9999985 4432    22 67888888888   78889999999999999976433222222  567778874432    


Q ss_pred             ----------cCChhHHHHHHHHHHHHhcCCHHHHHH-------H----------------------H--------HcCc
Q 015728          331 ----------VSDHEGSENAINSLMMICCDSLQAREE-------A----------------------I--------CAGV  363 (401)
Q Consensus       331 ----------~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~----------------------~--------~~g~  363 (401)
                                ..++-.+-..+.+|..++..+++..+.       +                      .        ...+
T Consensus       235 ~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a  314 (618)
T 1w63_A          235 GYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLA  314 (618)
T ss_dssp             CCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence                      235666777777777776654321111       0                      0        1136


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          364 LTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       364 v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      +..|..++.++ ++..|..|...|..+..+.|+-+
T Consensus       315 ~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~  348 (618)
T 1w63_A          315 INILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAV  348 (618)
T ss_dssp             HHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHH
Confidence            77888888776 88999999999999998777644

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=8.2e-08  Score=68.48  Aligned_cols=47  Identities=15%  Similarity=0.160  Sum_probs=40.5

Q ss_pred             CCCCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728            8 TIPHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus         8 ~~~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .-.+...|+||++...+++.+||||. ||..|+..     ...||.||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            34467899999999999999999999 99999974     3579999998764

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.48  E-value=2.5e-08  Score=73.52  Aligned_cols=45  Identities=16%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             CCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .++..|+||++.+.+|+.++|||. ||..|+..|     ..||.||..+..
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   61 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence            456789999999999999999999 999999865     369999998754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.39  E-value=7e-06  Score=87.22  Aligned_cols=280  Identities=10%  Similarity=0.023  Sum_probs=173.1

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      .+..+.+.+...+.+.+.+..|++.|..++..-..+ .........++.+...+.+.+        .+++..++. .+..
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~--------~~vr~~a~~-~l~~  243 (876)
T 1qgr_A          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD--------TRVRVAALQ-NLVK  243 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS--------HHHHHHHHH-HHHH
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC--------HHHHHHHHH-HHHH
Confidence            344444555443335778999999999887643221 111111225667777665544        458888888 6665


Q ss_pred             hcCCchh-hhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccch-----hh----h----h---hhhc-cchH
Q 015728          173 LLVGETE-SLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHET-----KE----L----C---CKLG-KDDR  234 (401)
Q Consensus       173 l~~~~~~-~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~-----~~----~----~---~~i~-~~~g  234 (401)
                      +...... ....+ ....++.++..+.+.+..++..+..++..+ ......     ++    .    +   ..+. ....
T Consensus       244 l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~al~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (876)
T 1qgr_A          244 IMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV-CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY  321 (876)
T ss_dssp             HHHHSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHH
T ss_pred             HHHHhHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHHHHhHhhhhccccccCCCccchhHHHHHHHHHH
Confidence            5532222 12223 235677778877777888999999888888 432100     00    0    0   0000 0124


Q ss_pred             HHHHHHHHcc--------CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          235 LLREIISLVH--------HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       235 ~i~~Lv~lL~--------~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      +++.++..+.        ++...++.|+.+|..++..-..  .++. .+++.+...+.   +.+..+++.|+.+|..++.
T Consensus       322 ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~---~~~~~~r~~a~~~l~~i~~  395 (876)
T 1qgr_A          322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIK---NPDWRYRDAAVMAFGCILE  395 (876)
T ss_dssp             HHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTT---CSSHHHHHHHHHHHHHTSS
T ss_pred             HhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHcc---CCChHHHHHHHHHHHHHHc
Confidence            6777888872        1234888999999988753221  1222 35555556666   5678899999999999997


Q ss_pred             CH--hhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH-HHHHHcCcHHHHHHHhhcCCCHHHHHHH
Q 015728          307 IE--NSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR-EEAICAGVLTQLLLLLQSQCSNRTKTKA  383 (401)
Q Consensus       307 ~~--~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~L~~ll~~~~~~~~~~~A  383 (401)
                      ..  +......  ...++.++. .+++.++.++..|+.+|.+++...+... ..-.-...++.|+..+++  .+.+|+.|
T Consensus       396 ~~~~~~~~~~~--~~~l~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a  470 (876)
T 1qgr_A          396 GPEPSQLKPLV--IQAMPTLIE-LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNV  470 (876)
T ss_dssp             SSCHHHHHHHH--HHHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHH
T ss_pred             CCCHHHHHHHH--HHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHH
Confidence            53  2222222  357888888 5677788899999999999986532210 001123566778888865  37889999


Q ss_pred             HHHHHHHHHhhH
Q 015728          384 RMLLKLLRSKWA  395 (401)
Q Consensus       384 ~~~L~~l~~~~~  395 (401)
                      .++|..+.+..+
T Consensus       471 ~~al~~l~~~~~  482 (876)
T 1qgr_A          471 CWAFSSLAEAAY  482 (876)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998655

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.37  E-value=7.1e-08  Score=91.06  Aligned_cols=45  Identities=13%  Similarity=0.228  Sum_probs=40.3

Q ss_pred             CCcccccccccccCCceEcCcccc-ccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQT-YDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~-fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .+++.|+||++.+.+|+.++|||. ||..|+..|     ..||.||..+..
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            457899999999999999999999 999999876     569999998754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.36  E-value=7.4e-06  Score=86.82  Aligned_cols=269  Identities=9%  Similarity=0.066  Sum_probs=169.4

Q ss_pred             hcChHHHHHHHHHHHHHHhcCc-h-hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh---
Q 015728          106 EATLETKLQIVQKIHVVLRESP-P-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES---  180 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~-~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~---  180 (401)
                      +.++..|..|+..|..++.... . ....+  ...++.|+..+.++.        +.++..+++ ++..++..-...   
T Consensus       380 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~--------~~vr~~a~~-~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQS--------LQVKETTAW-CIGRIADSVAESIDP  448 (861)
T ss_dssp             CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSC--------HHHHHHHHH-HHHHHHHHHGGGSCT
T ss_pred             CCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCc--------HHHHHHHHH-HHHHHHHHhhhhcCC
Confidence            3467889999999999986542 1 12222  246888888887664        558888888 777776321110   


Q ss_pred             hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc---hhhhhhhhccchHHHHHHHHHcc-CC--chhHHHHH
Q 015728          181 LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE---TKELCCKLGKDDRLLREIISLVH-HN--SEASDAGV  254 (401)
Q Consensus       181 ~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~---~~~~~~~i~~~~g~i~~Lv~lL~-~~--~~~~~~a~  254 (401)
                      ...+  ...++.++..|++. ..++..|+++|.++ ...-.   .+.....+   ..+++.|+.++. .+  ..++..++
T Consensus       449 ~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l-~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~  521 (861)
T 2bpt_A          449 QQHL--PGVVQACLIGLQDH-PKVATNCSWTIINL-VEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAF  521 (861)
T ss_dssp             TTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHH-HHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHH
T ss_pred             HHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHH-HHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHH
Confidence            1111  24577888888765 88999999999998 43210   00222222   357788888884 23  45888999


Q ss_pred             HHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhh--------c----cccchHHHHHHHHHHHHhCCHhh-HHHHHhCCCc
Q 015728          255 RAFSALCSTET-NRKTLVQEGAINGLIAYISNA--------L----TRERSLAAIAMARIEQLLAIENS-KDALINNPNG  320 (401)
Q Consensus       255 ~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~--------~----~~~~~~~~~a~~~L~~La~~~~~-~~~~~~~~g~  320 (401)
                      .+|..+..... .....++ ..+|.+++.|...        .    +....++..++.+|..++..-.. -....  ...
T Consensus       522 ~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l  598 (861)
T 2bpt_A          522 SALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DML  598 (861)
T ss_dssp             HHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHH
T ss_pred             HHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHH
Confidence            99999885333 2233333 4788888888631        0    01335677888888888753211 11111  135


Q ss_pred             HHHHHHHHHhcCCh-hHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          321 VYALVKMVFRVSDH-EGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       321 i~~Lv~~l~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      ++.++. +++..+. ..++.++.++..++...+..-... -...++.|+..+..+ ++.+|..|..++..+.+..++++
T Consensus       599 ~~~l~~-~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~  674 (861)
T 2bpt_A          599 MGLFFR-LLEKKDSAFIEDDVFYAISALAASLGKGFEKY-LETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDF  674 (861)
T ss_dssp             HHHHHH-HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGG
T ss_pred             HHHHHH-HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhc
Confidence            666667 4555555 688889988888875432211111 223778888888665 77899999999998888666543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.34  E-value=6.6e-05  Score=79.67  Aligned_cols=283  Identities=12%  Similarity=0.072  Sum_probs=177.5

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ  170 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L  170 (401)
                      +.+..+.+.+.+.+.++..+..++..|..++..-..  ..+..  ...++.+...+.++...      ..++..|+. .+
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~------~~vr~~a~~-~l  198 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPS------NNVKLAATN-AL  198 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSC------HHHHHHHHH-HH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCC------HHHHHHHHH-HH
Confidence            456666666653321577889999999999976321  11221  34677788888765311      458888888 66


Q ss_pred             HhhcCC-chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCch
Q 015728          171 KLLLVG-ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSE  248 (401)
Q Consensus       171 ~~l~~~-~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~  248 (401)
                      ..+... ..+..........++.+...+.+.+.+++..+..+|..++....  +.....+.  ..+++.++..+. .+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~--~~l~~~~~~~~~~~~~~  274 (876)
T 1qgr_A          199 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMG--PALFAITIEAMKSDIDE  274 (876)
T ss_dssp             HHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG--GGCHHHHT--TTHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH--HHHHHHHH--HHHHHHHHHHhcCCchH
Confidence            655421 11111000011246666677777788999999999999833222  12233332  146777777664 4556


Q ss_pred             hHHHHHHHHHHhcCCCc---------------------hh-HHHHhcCcHHHHHHHHHhhc----cccchHHHHHHHHHH
Q 015728          249 ASDAGVRAFSALCSTET---------------------NR-KTLVQEGAINGLIAYISNAL----TRERSLAAIAMARIE  302 (401)
Q Consensus       249 ~~~~a~~aL~~Ls~~~~---------------------n~-~~iv~~G~v~~Lv~lL~~~~----~~~~~~~~~a~~~L~  302 (401)
                      ++..|+.++.+++....                     +. .... ...+|.+++.|....    +.+..++..|..+|.
T Consensus       275 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~  353 (876)
T 1qgr_A          275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM  353 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHH
Confidence            89999998888874320                     00 0011 336777888775210    123467888888888


Q ss_pred             HHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHH
Q 015728          303 QLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKT  381 (401)
Q Consensus       303 ~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~  381 (401)
                      .++..-..  .++  ...++.+.. .+.+.+...++.|+.+|..++.... +.... .-...++.|+..+.++ .+.+|.
T Consensus       354 ~l~~~~~~--~~~--~~~l~~l~~-~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~-~~~vr~  426 (876)
T 1qgr_A          354 LLATCCED--DIV--PHVLPFIKE-HIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRD  426 (876)
T ss_dssp             HHHHHHGG--GGH--HHHHHHHHH-HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCS-SHHHHH
T ss_pred             HHHHHCcH--hhH--HHHHHHHHH-HccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCC-CHHHHH
Confidence            88753221  121  134555555 4566778899999999999987643 32222 2345889999999877 899999


Q ss_pred             HHHHHHHHHHHhhHH
Q 015728          382 KARMLLKLLRSKWAE  396 (401)
Q Consensus       382 ~A~~~L~~l~~~~~e  396 (401)
                      .|.++|..+.+..++
T Consensus       427 ~a~~~l~~~~~~~~~  441 (876)
T 1qgr_A          427 TAAWTVGRICELLPE  441 (876)
T ss_dssp             HHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhCch
Confidence            999999999996554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.33  E-value=2.8e-05  Score=76.01  Aligned_cols=280  Identities=11%  Similarity=0.077  Sum_probs=170.1

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhh--------HH---HhcCChHHHHHHhccCCcccchhhhHHHHH
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASN--------CL---IQLGFLPLLLKQLFGKAESKFSQVYVQFVE  163 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~--------~i---~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~  163 (401)
                      ...+...+.+.+.+...|..|+..|+++.......+.        .+   .+...-..|+..|.+.+..        + .
T Consensus        37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~--------v-~  107 (462)
T 1ibr_B           37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYR--------P-S  107 (462)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS--------S-C
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCch--------h-h
Confidence            4455566665545788899999999999755421110        00   0112234567777766543        5 5


Q ss_pred             HHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH
Q 015728          164 ESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHG--SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS  241 (401)
Q Consensus       164 ~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~--~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~  241 (401)
                      .+.. ++..++..+....   .-.+.++.|+..+.++  +...++.+..+|..+ ...-..+.....   ...+++.++.
T Consensus       108 ~~~~-~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l-~~~~~~~~~~~~---~~~ll~~l~~  179 (462)
T 1ibr_B          108 SASQ-CVAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYI-CQDIDPEQLQDK---SNEILTAIIQ  179 (462)
T ss_dssp             SHHH-HHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH-HHHSCGGGTGGG---HHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH-HHhCCchhhHhH---HHHHHHHHHH
Confidence            5555 6666664321111   1256799999999988  889999999999999 432100011111   1357788888


Q ss_pred             Hcc-C--CchhHHHHHHHHHHhcCCCc-hhH-HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH-HHHH
Q 015728          242 LVH-H--NSEASDAGVRAFSALCSTET-NRK-TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK-DALI  315 (401)
Q Consensus       242 lL~-~--~~~~~~~a~~aL~~Ls~~~~-n~~-~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~-~~~~  315 (401)
                      .|. .  +..++..|+.++.++...-. +-. .....-.++.+.+++.   +.+..++..++.+|..++...... ...+
T Consensus       180 ~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~vr~~~~~~l~~l~~~~~~~~~~~~  256 (462)
T 1ibr_B          180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ---CPDTRVRVAALQNLVKIMSLYYQYMETYM  256 (462)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHCGGGCTTTT
T ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            884 3  45699999999998763211 110 1111114556666655   567889999999999988532211 1111


Q ss_pred             hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHH-----------------HHHH---HcCcHHHHHHHhhcC-
Q 015728          316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAR-----------------EEAI---CAGVLTQLLLLLQSQ-  374 (401)
Q Consensus       316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----------------~~~~---~~g~v~~L~~ll~~~-  374 (401)
                       ..+.++.++. .+++.++.++..|+..+..++....+..                 ..+.   -...++.|+..|... 
T Consensus       257 -~~~l~~~~~~-~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d  334 (462)
T 1ibr_B          257 -GPALFAITIE-AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD  334 (462)
T ss_dssp             -TTTHHHHHHH-HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             -HHHHHHHHHH-HHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcc
Confidence             1156676666 4566777889999999988875421100                 0011   133566666666432 


Q ss_pred             -----CCHHHHHHHHHHHHHHHHhhHH
Q 015728          375 -----CSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       375 -----~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                           .+...|..|..+|..+.+..++
T Consensus       335 ~d~~~~~~~~r~~a~~~L~~l~~~~~~  361 (462)
T 1ibr_B          335 ENDDDDDWNPCKAAGVCLMLLATCCED  361 (462)
T ss_dssp             SSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred             cccccccchHHHHHHHHHHHHHHhccH
Confidence                 1346899999999999886653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.30  E-value=1.3e-05  Score=71.96  Aligned_cols=187  Identities=11%  Similarity=0.136  Sum_probs=134.3

Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C-CchhHHHHHHHHHHhcCCCchh-H
Q 015728          192 SFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H-NSEASDAGVRAFSALCSTETNR-K  268 (401)
Q Consensus       192 ~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~a~~aL~~Ls~~~~n~-~  268 (401)
                      .+.+.+++.+...|..|+..|..++....   ....  .....+++.|...+. + +..++..|+.+|..|+..-... .
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~---~~~~--~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~   93 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHP---KLEN--GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS   93 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCS---SBCC--CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCC---CCCC--CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence            47788888899999999999999843312   1111  122367788888883 4 5669999999999999432211 1


Q ss_pred             HHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          269 TLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       269 ~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                      ..+ .-.+|+|++.+.   +.+..+++.|..+|..++.....       ...++.+.. .+++.++.+++.++..|..+.
T Consensus        94 ~~~-~~ilp~ll~~l~---d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~-~l~~~~~~vr~~~l~~l~~~l  161 (242)
T 2qk2_A           94 NYA-SACVPSLLEKFK---EKKPNVVTALREAIDAIYASTSL-------EAQQESIVE-SLSNKNPSVKSETALFIARAL  161 (242)
T ss_dssp             HHH-HHHHHHHHHGGG---CCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHH-HTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHH-HHcCCChHHHHHHHHHHHHHH
Confidence            112 237888998888   67788999999999999864321       124666777 467778899999999999964


Q ss_pred             cC-CHHH-HHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          349 CD-SLQA-REEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       349 ~~-~~~~-~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      .. +++. -...+ ...++.|+.+|.+. ...+|+.|...+..+.++.+++
T Consensus       162 ~~~~~~~~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg~~  210 (242)
T 2qk2_A          162 TRTQPTALNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLMGDK  210 (242)
T ss_dssp             TTCCGGGCCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHcCCCCccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCHH
Confidence            33 2221 11222 35788999999777 8999999999999999988876

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.27  E-value=6.7e-05  Score=76.97  Aligned_cols=251  Identities=13%  Similarity=0.153  Sum_probs=163.9

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      ...+.+.|.  +.++..|+.|+..+.++...+++..+     +.++.+..+|.+.+        +.++..|+. +|..+.
T Consensus       144 ~~~l~~~L~--~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d--------~~V~~~Al~-~L~~i~  207 (618)
T 1w63_A          144 AGEVEKLLK--TSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKN--------HGVLHTSVV-LLTEMC  207 (618)
T ss_dssp             HHHHHHHHH--SCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCC--------HHHHHHHHH-HHHHHC
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCC--------HhHHHHHHH-HHHHHH
Confidence            344445554  35788999999999999998875332     56888888887765        459999999 888888


Q ss_pred             CCchhhhhhcccCCchHHHHHHhhc---------------CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHH
Q 015728          175 VGETESLNLLNEESKMESFIVLFEH---------------GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREI  239 (401)
Q Consensus       175 ~~~~~~~~~v~~~g~i~~Lv~~L~~---------------~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~L  239 (401)
                      ..+.+....+  ...++.++.+|.+               .++-.|.....+|..+ ...++  +....      .++.|
T Consensus       208 ~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l-~~~~~--~~~~~------~~~~L  276 (618)
T 1w63_A          208 ERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL-GRNDD--DSSEA------MNDIL  276 (618)
T ss_dssp             CSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH-TTTCH--HHHHT------THHHH
T ss_pred             HhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh-CCCCH--HHHHH------HHHHH
Confidence            6554322222  2467888887763               3677888888888888 54331  22222      23344


Q ss_pred             HHHcc-------CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHH
Q 015728          240 ISLVH-------HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKD  312 (401)
Q Consensus       240 v~lL~-------~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~  312 (401)
                      ..+++       .+..+...|++++.++...+    .+.+ .+++.|..+|.   +++..++..|+.+|..++...   .
T Consensus       277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L~---~~d~~vr~~aL~~L~~i~~~~---p  345 (618)
T 1w63_A          277 AQVATNTETSKNVGNAILYETVLTIMDIKSES----GLRV-LAINILGRFLL---NNDKNIRYVALTSLLKTVQTD---H  345 (618)
T ss_dssp             HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHHT---CSSTTTHHHHHHHHHHHHHHH---H
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHHh---CCCCchHHHHHHHHHHHHhhC---H
Confidence            44431       12357788888888875432    2222 46788888888   567788888998888887532   1


Q ss_pred             HHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          313 ALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       313 ~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .++.  .....++. ++.+.+..++..|+.+|..++... +.. .     .+..|+..+.+. +...|..+...+..++.
T Consensus       346 ~~~~--~~~~~i~~-~l~d~d~~Ir~~alelL~~l~~~~-nv~-~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          346 NAVQ--RHRSTIVD-CLKDLDVSIKRRAMELSFALVNGN-NIR-G-----MMKELLYFLDSC-EPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHHG--GGHHHHHH-GGGSSCHHHHHHHHHHHHHHCCSS-STH-H-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHH-HccCCChhHHHHHHHHHHHHcccc-cHH-H-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence            2221  24556666 466777788888888888887653 221 2     235666666665 67777777777777766


Q ss_pred             hh
Q 015728          393 KW  394 (401)
Q Consensus       393 ~~  394 (401)
                      .+
T Consensus       415 k~  416 (618)
T 1w63_A          415 KY  416 (618)
T ss_dssp             SS
T ss_pred             Hh
Confidence            43

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.23  E-value=6.5e-06  Score=91.20  Aligned_cols=267  Identities=7%  Similarity=0.068  Sum_probs=173.0

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      +.+.+.|..|...|.+........-..-.....++.|+..|.+.+        .+++..|+. .|..+...-.+  ..+ 
T Consensus        17 s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~--------~~vR~~A~~-~L~~l~~~~~~--~~~-   84 (1230)
T 1u6g_C           17 SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN--------GEVQNLAVK-CLGPLVSKVKE--YQV-   84 (1230)
T ss_dssp             CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS--------HHHHHHHHH-HHHHHHTTSCH--HHH-
T ss_pred             CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC--------HHHHHHHHH-HHHHHHHhCCH--HHH-
Confidence            357789999999999877553211000111245788888887554        558888888 77766632221  111 


Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhh----hhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHH
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE----LCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSA  259 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~----~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~  259 (401)
                       ...++.++..|.+++..+|..|+.+|..++..... +.    .....  ...++|.|+..+.  ++...+..|+.+|.+
T Consensus        85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~-~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP-ASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHH--HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC-cccccchHHHH--HHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence             12467778888888888999999999998332221 00    01111  1357889998885  445699999999999


Q ss_pred             hcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHH
Q 015728          260 LCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSE  338 (401)
Q Consensus       260 Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~  338 (401)
                      ++.. ...-... -...++.++..|.   +.+..++..|+.+|..++......  +  -...++.+++.+....+...+.
T Consensus       161 ~~~~~~~~l~~~-~~~ll~~l~~~L~---~~~~~vR~~a~~al~~l~~~~~~~--~--~~~~l~~l~~~L~~~~~~~~r~  232 (1230)
T 1u6g_C          161 MLSRQGGLLVNF-HPSILTCLLPQLT---SPRLAVRKRTIIALGHLVMSCGNI--V--FVDLIEHLLSELSKNDSMSTTR  232 (1230)
T ss_dssp             HHHHTCSSCTTT-HHHHHHHHGGGGG---CSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCT
T ss_pred             HHHHhHhHHHHH-HHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHhcCHH--H--HHHHHHHHHHHhccCCchhHHH
Confidence            8842 1111001 1235666666676   567789999999999999653322  2  2357888998665544345677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          339 NAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       339 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      .++.++..++...+..- .-.-...++.++..+++. ++.+|+.|...+..+.+.+++++
T Consensus       233 ~a~~~l~~l~~~~~~~~-~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~  290 (1230)
T 1u6g_C          233 TYIQCIAAISRQAGHRI-GEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEV  290 (1230)
T ss_dssp             THHHHHHHHHHHSSGGG-TTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHH
Confidence            78888888876433210 011256788899998876 88899999999999998777653

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=2e-06  Score=63.24  Aligned_cols=52  Identities=10%  Similarity=0.142  Sum_probs=42.7

Q ss_pred             CCCccccccccccc--CCceEcCcc-----ccccHHhHHHHHHcC-CCCCCCCcccCCCC
Q 015728            9 IPHLFRCPISLDLF--TDPVTLCTG-----QTYDRSSIEKWLAAG-NLTCPVTMQTLHDP   60 (401)
Q Consensus         9 ~~~~~~C~iC~~~~--~~Pv~~~Cg-----h~fc~~Ci~~~~~~~-~~~CP~c~~~~~~~   60 (401)
                      ..++..|.||++.+  .+|+.++|.     |.|...||.+|+... ..+||.|+..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            34567899999877  468888996     999999999999863 46899999988653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.22  E-value=1.7e-05  Score=69.32  Aligned_cols=186  Identities=12%  Similarity=0.154  Sum_probs=134.2

Q ss_pred             ChhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHH
Q 015728           91 TIDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCV  169 (401)
Q Consensus        91 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~  169 (401)
                      +++.+..+.++|.  +.++..+.+|+..|..+.+.-+.. +..+. ...++.++.++++.+        .++.-+|+. +
T Consensus        31 ~e~~l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~d--------Ekval~A~r-~   98 (265)
T 3b2a_A           31 DKRALFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQEN--------EKVTIKALR-A   98 (265)
T ss_dssp             CHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTT--------HHHHHHHHH-H
T ss_pred             chhHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccc--------hhHHHHHHH-H
Confidence            4466777878774  557889999999999999985543 33333 346999999998876        458888998 6


Q ss_pred             HHhhcCCchhh-hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCc
Q 015728          170 QKLLLVGETES-LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNS  247 (401)
Q Consensus       170 L~~l~~~~~~~-~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~  247 (401)
                      |+.|-.+.+-. ....   -.+..+.+++++++.-.++.++..+..+ ...+          ...+.+..+..++ +.+.
T Consensus        99 L~~LLe~vpL~~~~y~---Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~----------~~~~V~~~l~sLl~Skd~  164 (265)
T 3b2a_A           99 LGYLVKDVPMGSKTFL---KAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE----------DSKLVRTYINELVVSPDL  164 (265)
T ss_dssp             HHHHHTTCCBCHHHHH---HHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC----------CCHHHHHHHHHHHTCSSH
T ss_pred             HHHHHcCCCCCHHHHH---HHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc----------chHHHHHHHHHHHhCCCh
Confidence            66554332211 1111   1356778888899999999999999998 6543          1236677788888 5677


Q ss_pred             hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC
Q 015728          248 EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI  307 (401)
Q Consensus       248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~  307 (401)
                      +++..+.++|.+++...++...+  .+++.-+-.+|.   +.++.+++.|+.+|..+...
T Consensus       165 ~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~---~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          165 YTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQ---NDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             HHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHT---CSCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHcC
Confidence            89999999999999644332221  124455778888   67999999999999998865

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.21  E-value=1.8e-07  Score=73.86  Aligned_cols=46  Identities=20%  Similarity=0.436  Sum_probs=0.4

Q ss_pred             cccccccccccCCc-----------------eE-cCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           12 LFRCPISLDLFTDP-----------------VT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        12 ~~~C~iC~~~~~~P-----------------v~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      +-.|+||++.|.+|                 +. ++|+|.|+..||.+|+. ...+||.||.++.
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~-~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH-cCCcCCCCCCeee
Confidence            35799999999774                 22 48999999999999998 4678999998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.15  E-value=5.9e-05  Score=79.88  Aligned_cols=291  Identities=11%  Similarity=0.085  Sum_probs=169.3

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCC-------cccchhhhHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKA-------ESKFSQVYVQFVEES  165 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~-------~~~~~~~~~~~~~~a  165 (401)
                      +.+..+.+.+...+.+...+..++..|..+............ ...+|.++..|...-       ..........++..+
T Consensus       498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  576 (861)
T 2bpt_A          498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI  576 (861)
T ss_dssp             HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence            445555555554333466788899999999887664322222 246777888776420       000000124466677


Q ss_pred             HHHHHHhhcCCch-hhhhhcccCCchHHHHHHhhcCCH-HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc
Q 015728          166 LSCVQKLLLVGET-ESLNLLNEESKMESFIVLFEHGSC-SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV  243 (401)
Q Consensus       166 ~~~~L~~l~~~~~-~~~~~v~~~g~i~~Lv~~L~~~~~-~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL  243 (401)
                      +. ++..+...-. .....+  ...++.++..+++.+. .+++.+..++..++....  ++....+   ..++|.|+..+
T Consensus       577 ~~-~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~--~~~~~~l---~~i~~~l~~~l  648 (861)
T 2bpt_A          577 LT-VLAAVIRKSPSSVEPVA--DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG--KGFEKYL---ETFSPYLLKAL  648 (861)
T ss_dssp             HH-HHHHHHHHCGGGTGGGH--HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG--GGGHHHH---HHHHHHHHHHH
T ss_pred             HH-HHHHHHHHhhhhhHHHH--HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHh--hhHHHHH---HHHHHHHHHHh
Confidence            77 6665552211 112222  2457777888887766 889998888888832222  1333333   35778888888


Q ss_pred             c-CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcH
Q 015728          244 H-HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGV  321 (401)
Q Consensus       244 ~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i  321 (401)
                      + .+...+..++.++..++..-.....-.-...++.+++.|.+. +.+.+++..++.+|..++..- +.-....  ...+
T Consensus       649 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~l  725 (861)
T 2bpt_A          649 NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP-NARRELKPAVLSVFGDIASNIGADFIPYL--NDIM  725 (861)
T ss_dssp             HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-cccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHHH
Confidence            4 566789999999998884332211111245778888888730 123789999999999988642 2222221  2456


Q ss_pred             HHHHHHHHhcCC-----------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHH----HHhhcC--C-CHHHHHHH
Q 015728          322 YALVKMVFRVSD-----------HEGSENAINSLMMICCDSLQAREEAICAGVLTQLL----LLLQSQ--C-SNRTKTKA  383 (401)
Q Consensus       322 ~~Lv~~l~~~~~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~----~ll~~~--~-~~~~~~~A  383 (401)
                      +.+++. +....           ...++.++.++..++..-... ...+ ...++.++    ..+++.  . +..+|+.|
T Consensus       726 ~~l~~~-~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~-~~~~-~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a  802 (861)
T 2bpt_A          726 ALCVAA-QNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK-PEAL-FPYVGTIFQFIAQVAEDPQLYSEDATSRAA  802 (861)
T ss_dssp             HHHHHH-HTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHH-GGGHHHHHHHHHHHHHCHHHHTSHHHHHHH
T ss_pred             HHHHHH-HhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC-HHHH-HHHHHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            667763 43221           235677777777776432110 0111 12333333    344332  1 67899999


Q ss_pred             HHHHHHHHHhh-HHhh
Q 015728          384 RMLLKLLRSKW-AEEL  398 (401)
Q Consensus       384 ~~~L~~l~~~~-~e~~  398 (401)
                      ..++..+.+.+ +.++
T Consensus       803 ~~~l~~l~~~~~g~~~  818 (861)
T 2bpt_A          803 VGLIGDIAAMFPDGSI  818 (861)
T ss_dssp             HHHHHHHHHHCTTSTT
T ss_pred             HHHHHHHHHHcCCchH
Confidence            99999999977 6554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.10  E-value=1.3e-06  Score=70.81  Aligned_cols=119  Identities=9%  Similarity=0.099  Sum_probs=83.7

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      ...++.|+.+|.+++..        ++..|++ .|..+.           . ..++.|+..|++++..+|..|+++|.++
T Consensus        11 ~~~~~~l~~~L~~~~~~--------vR~~A~~-~L~~~~-----------~-~~~~~L~~~L~d~~~~vR~~A~~aL~~~   69 (131)
T 1te4_A           11 SSGLVPRGSHMADENKW--------VRRDVST-ALSRMG-----------D-EAFEPLLESLSNEDWRIRGAAAWIIGNF   69 (131)
T ss_dssp             ----------CCSSCCC--------SSSSCCS-STTSCS-----------S-TTHHHHHHGGGCSCHHHHHHHHHHHGGG
T ss_pred             cccHHHHHHHhcCCCHH--------HHHHHHH-HHHHhC-----------c-hHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence            45678888888877654        7777777 555332           1 1378899999999999999999998777


Q ss_pred             HhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHH
Q 015728          216 ISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLA  294 (401)
Q Consensus       216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~  294 (401)
                       ..              ..+++.|+.+| +++..++..|+++|.++.          +..+++.|+++|.   +++..++
T Consensus        70 -~~--------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~---d~~~~vr  121 (131)
T 1te4_A           70 -QD--------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAE---TGTGFAR  121 (131)
T ss_dssp             -CS--------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTT---SCCTHHH
T ss_pred             -CC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHh---CCCHHHH
Confidence             31              25689999999 466779999999999886          2357899999998   6788899


Q ss_pred             HHHHHHHHH
Q 015728          295 AIAMARIEQ  303 (401)
Q Consensus       295 ~~a~~~L~~  303 (401)
                      ..|+.+|..
T Consensus       122 ~~A~~aL~~  130 (131)
T 1te4_A          122 KVAVNYLET  130 (131)
T ss_dssp             HHHHHHGGG
T ss_pred             HHHHHHHHh
Confidence            998888754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.03  E-value=8e-07  Score=72.03  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=86.6

Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCC
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTE  264 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~  264 (401)
                      ....++.++..|++++..+|..|+.+|..+ .             .  ..++.|+.+|+ ++..++..|+++|.++..  
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~-~-------------~--~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRM-G-------------D--EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSC-S-------------S--TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHh-C-------------c--hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--
Confidence            456788899999998999998888777554 2             1  12588999994 566799999999988763  


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728          265 TNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSL  344 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L  344 (401)
                              .++++.|+++|.   +++..++..|+.+|..+.           +..+++.|++ ++++.++.++..|+.+|
T Consensus        72 --------~~a~~~L~~~L~---d~~~~VR~~A~~aL~~~~-----------~~~a~~~L~~-~l~d~~~~vr~~A~~aL  128 (131)
T 1te4_A           72 --------ERAVEPLIKLLE---DDSGFVRSGAARSLEQIG-----------GERVRAAMEK-LAETGTGFARKVAVNYL  128 (131)
T ss_dssp             --------HHHHHHHHHHHH---HCCTHHHHHHHHHHHHHC-----------SHHHHHHHHH-HTTSCCTHHHHHHHHHG
T ss_pred             --------HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC-----------cHHHHHHHHH-HHhCCCHHHHHHHHHHH
Confidence                    246999999998   688899999999999874           3457889999 56777888999898887


Q ss_pred             HH
Q 015728          345 MM  346 (401)
Q Consensus       345 ~~  346 (401)
                      ..
T Consensus       129 ~~  130 (131)
T 1te4_A          129 ET  130 (131)
T ss_dssp             GG
T ss_pred             Hh
Confidence            54

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.93  E-value=6.7e-05  Score=67.21  Aligned_cols=179  Identities=15%  Similarity=0.169  Sum_probs=125.1

Q ss_pred             HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhh-hHHHhcCChHHHHHHhc-cCCcccchhhhHHHHHHHHHHHHHhhcC
Q 015728           98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPAS-NCLIQLGFLPLLLKQLF-GKAESKFSQVYVQFVEESLSCVQKLLLV  175 (401)
Q Consensus        98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~-s~~~~~~~~~~~~~~~~a~~~~L~~l~~  175 (401)
                      +.+.+.  +.++..|..|+..|..+....+... ..+  ...++.|...|. +.+        ..++..|+. ++..|+.
T Consensus        20 l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~--------~~V~~~a~~-~l~~la~   86 (242)
T 2qk2_A           20 FYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSN--------VVLVAMAGK-CLALLAK   86 (242)
T ss_dssp             HHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSC--------HHHHHHHHH-HHHHHHH
T ss_pred             HHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCC--------HHHHHHHHH-HHHHHHH
Confidence            434443  4679999999999999998844311 111  234777778774 554        458888888 7777773


Q ss_pred             Cch-hhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728          176 GET-ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG  253 (401)
Q Consensus       176 ~~~-~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a  253 (401)
                      .-. .....+  ...++.++..+.+.+..+|+.|..+|..+ ....   .       ...+++.|...|+ .++.++..+
T Consensus        87 ~l~~~~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~-~~~~---~-------~~~ll~~l~~~l~~~~~~vr~~~  153 (242)
T 2qk2_A           87 GLAKRFSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAI-YAST---S-------LEAQQESIVESLSNKNPSVKSET  153 (242)
T ss_dssp             HHGGGGHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTS---C-------HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHhhhHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHcC---C-------HHHHHHHHHHHHcCCChHHHHHH
Confidence            211 111112  23688999999999999999999999999 4322   1       1256788888884 567799999


Q ss_pred             HHHHHHhc-CC-Cc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC
Q 015728          254 VRAFSALC-ST-ET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI  307 (401)
Q Consensus       254 ~~aL~~Ls-~~-~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~  307 (401)
                      +..|..+. .. ++  ....+ . ..+|.|+.+|.   +.+.+++..|..+|..++..
T Consensus       154 l~~l~~~l~~~~~~~~~~~~l-~-~l~p~l~~~l~---D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          154 ALFIARALTRTQPTALNKKLL-K-LLTTSLVKTLN---EPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             HHHHHHHHTTCCGGGCCHHHH-H-HHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccHHHH-H-HHHHHHHHHhc---CCChHHHHHHHHHHHHHHHH
Confidence            99999965 33 22  12222 2 58999999998   78889999999999988853

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.89  E-value=0.0012  Score=69.77  Aligned_cols=200  Identities=13%  Similarity=0.140  Sum_probs=126.3

Q ss_pred             hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHh
Q 015728          139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLF-EHGSCSIKKRLCHLVEVIIS  217 (401)
Q Consensus       139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L-~~~~~~~~~~aa~~L~~l~s  217 (401)
                      +..|..+|.+.+.        .+.+.|+. .|..+-.+..+.       .++..|+..+ ...+..++..++..|..+ .
T Consensus       474 ~e~L~~~L~dd~~--------~~~~~Aal-ALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll-~  536 (963)
T 4ady_A          474 YEALKEVLYNDSA--------TSGEAAAL-GMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALI-N  536 (963)
T ss_dssp             HHHHHHHHHTCCH--------HHHHHHHH-HHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHhcCCH--------HHHHHHHH-HHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhh-h
Confidence            6667777765542        24444444 555432222211       1355566654 344677888888888877 4


Q ss_pred             cccchhhhhhhhccchHHHHHHHHHcc-C-CchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHH
Q 015728          218 SSHETKELCCKLGKDDRLLREIISLVH-H-NSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAA  295 (401)
Q Consensus       218 ~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~  295 (401)
                      ...            +..++.++..|. . ++-++..++.++.--.....|.      .+|..|++.+.+  +.+..++.
T Consensus       537 ~g~------------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~--d~~d~VRr  596 (963)
T 4ady_A          537 YGR------------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVS--DSNDDVRR  596 (963)
T ss_dssp             TTC------------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHH--CSCHHHHH
T ss_pred             CCC------------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhcc--CCcHHHHH
Confidence            332            235688888883 3 3345555555554333444443      256778888775  56778899


Q ss_pred             HHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCC
Q 015728          296 IAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQC  375 (401)
Q Consensus       296 ~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~  375 (401)
                      .|+.+|..+...         ++..++.+++.+.++.++.++..|+.+|..++..++..  .     ++..|..++.+. 
T Consensus       597 aAViaLGlI~~g---------~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--~-----aid~L~~L~~D~-  659 (963)
T 4ady_A          597 AAVIALGFVLLR---------DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--S-----AIDVLDPLTKDP-  659 (963)
T ss_dssp             HHHHHHHHHTSS---------SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--H-----HHHHHHHHHTCS-
T ss_pred             HHHHHHHhhccC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--H-----HHHHHHHHccCC-
Confidence            999999887653         33567888886777788999999999999998765432  1     334455555444 


Q ss_pred             CHHHHHHHHHHHHHHHH
Q 015728          376 SNRTKTKARMLLKLLRS  392 (401)
Q Consensus       376 ~~~~~~~A~~~L~~l~~  392 (401)
                      ++.+|+.|...|.++.-
T Consensus       660 d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          660 VDFVRQAAMIALSMILI  676 (963)
T ss_dssp             SHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            77888888777776653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.00024  Score=64.08  Aligned_cols=194  Identities=8%  Similarity=0.023  Sum_probs=131.5

Q ss_pred             HHHHhhcCCHHHHHHHHHHHHH-HHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHhcCCCc---h
Q 015728          193 FIVLFEHGSCSIKKRLCHLVEV-IISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSALCSTET---N  266 (401)
Q Consensus       193 Lv~~L~~~~~~~~~~aa~~L~~-l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~~~~---n  266 (401)
                      +...+.+.+...|..|...|.. + .....  ...........++..|...+ + .+..++..|+.+|..|+..-.   -
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~-~~~~~--~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f   97 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSV-LSQTK--KLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF   97 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHT-GGGCC--CBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHH-HhcCC--ccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence            4566788899999988888888 7 32110  11100123246778888888 3 355689999999999994222   1


Q ss_pred             h-HHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHh-CCCcHHHHHHHHHhcCChhHHHHHHHHH
Q 015728          267 R-KTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALIN-NPNGVYALVKMVFRVSDHEGSENAINSL  344 (401)
Q Consensus       267 ~-~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~-~~g~i~~Lv~~l~~~~~~~~~~~a~~~L  344 (401)
                      . ....  -.+|++++.+.   +....+++.+..+|..++..-+- ..... -...++.|+. .+++.++.+++.++.+|
T Consensus        98 ~~~y~~--~llp~ll~~l~---dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~-~l~~k~~~vk~~al~~l  170 (249)
T 2qk1_A           98 SKDYVS--LVFTPLLDRTK---EKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILE-HMKHKTPQIRMECTQLF  170 (249)
T ss_dssp             CHHHHH--HHHHHHHHGGG---CCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHH-HTTCSSHHHHHHHHHHH
T ss_pred             cHHHHH--HHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHH-HHcCCChHHHHHHHHHH
Confidence            1 2222  27889999888   56678888888888888753210 00000 0134566777 46777889999999999


Q ss_pred             HHHhcCCHH---HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          345 MMICCDSLQ---AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       345 ~~l~~~~~~---~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      ..+....+.   .-...+....++.|..+|.+. ...+|+.|...|..+.++.+++
T Consensus       171 ~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~vG~~  225 (249)
T 2qk1_A          171 NASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIFGMN  225 (249)
T ss_dssp             HHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCHH
Confidence            998765432   111222268889999999777 9999999999999999988775

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.78  E-value=0.0025  Score=65.32  Aligned_cols=256  Identities=14%  Similarity=0.193  Sum_probs=161.4

Q ss_pred             HHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc
Q 015728           98 LKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE  177 (401)
Q Consensus        98 l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~  177 (401)
                      +.++|.+.+.++-.|+.|+..+.++.+.+++.   +...+.++.|..+|.+.+        +.++..|+. ++..++.++
T Consensus       151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d--------~~V~~~a~~-~l~~i~~~~  218 (621)
T 2vgl_A          151 IPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQH--------LGVVTAATS-LITTLAQKN  218 (621)
T ss_dssp             HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSC--------HHHHHHHHH-HHHHHHHHC
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCC--------ccHHHHHHH-HHHHHHHhC
Confidence            33545334567899999999999999987642   222589999999997665        459999999 888776433


Q ss_pred             hhhhhhcccCCchHHHHHHhh----cC-------------CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHH
Q 015728          178 TESLNLLNEESKMESFIVLFE----HG-------------SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREII  240 (401)
Q Consensus       178 ~~~~~~v~~~g~i~~Lv~~L~----~~-------------~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv  240 (401)
                      ...   .  ...++.++..|.    .+             ++-.|.....+|..+ ...+ .++.+..+.   ..+..++
T Consensus       219 ~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~-~~~~-d~~~~~~l~---~~L~~il  288 (621)
T 2vgl_A          219 PEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY-PPPE-DPAVRGRLT---ECLETIL  288 (621)
T ss_dssp             HHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS-SSCS-SHHHHHHHH---HHHHHHH
T ss_pred             hHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh-CCCC-CHHHHHHHH---HHHHHHH
Confidence            321   1  124555554443    22             455676666666555 4321 013333221   2334444


Q ss_pred             HHcc----------CC--chhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH
Q 015728          241 SLVH----------HN--SEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE  308 (401)
Q Consensus       241 ~lL~----------~~--~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~  308 (401)
                      ..+.          .+  ..+.-.++.++..+...++-    .+ .++..|..+|.   +++..++-.|+..|..++...
T Consensus       289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~----~~-~~~~~L~~~L~---~~~~niry~aL~~l~~l~~~~  360 (621)
T 2vgl_A          289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL----LV-RACNQLGQFLQ---HRETNLRYLALESMCTLASSE  360 (621)
T ss_dssp             HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHH----HH-HHHHHHHHHSS---CSCHHHHHHHHHHHHHHTTCT
T ss_pred             HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHH----HH-HHHHHHHHHhc---CCCcchHHHHHHHHHHHHhcc
Confidence            3221          12  25777888888888633222    22 36778999997   577889999999999998654


Q ss_pred             hhHHHHHhCCCcHHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 015728          309 NSKDALINNPNGVYALVKMVFR-VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLL  387 (401)
Q Consensus       309 ~~~~~~~~~~g~i~~Lv~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L  387 (401)
                      .....+.   .....++. .++ +.+..++..++.+|..++..  +....     .+..|...+... +...|+.+...+
T Consensus       361 ~~~~~~~---~~~~~i~~-~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I  428 (621)
T 2vgl_A          361 FSHEAVK---THIETVIN-ALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETA-DYSIREEIVLKV  428 (621)
T ss_dssp             TTHHHHH---TTHHHHHH-HHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHH
T ss_pred             CcHHHHH---HHHHHHHH-HhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            3222332   34566777 466 78888999999999999854  33323     345677777665 667777777666


Q ss_pred             HHHHHhhH
Q 015728          388 KLLRSKWA  395 (401)
Q Consensus       388 ~~l~~~~~  395 (401)
                      ..++..++
T Consensus       429 ~~la~k~~  436 (621)
T 2vgl_A          429 AILAEKYA  436 (621)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            66665443

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.73  E-value=0.001  Score=61.63  Aligned_cols=177  Identities=11%  Similarity=0.045  Sum_probs=123.7

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +..+.+.+ |.  +++.++++.++..|......+......+++.||+..|+++....+..        .+.+++. ++..
T Consensus       119 ra~~iiek-L~--~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN--------~q~Y~L~-AL~~  186 (339)
T 3dad_A          119 RVNAILEK-LY--SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHN--------YQSYILR-ALGQ  186 (339)
T ss_dssp             HHHHHHHH-HH--HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHH--------HHHHHHH-HHHH
T ss_pred             HHHHHHHH-Hh--cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChH--------HHHHHHH-HHHH
Confidence            44444444 44  35678899999999997777778888999999999999999887654        8999999 7776


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchH---------HHHHHHHHc
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDR---------LLREIISLV  243 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g---------~i~~Lv~lL  243 (401)
                      |-.+.+....++.....|..+..++.+.+..+...|..+|..++..++   .+...+..+-.         .++.|+.+|
T Consensus       187 LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se---~~~~lv~~av~~v~~~~~~~p~~~Lv~~L  263 (339)
T 3dad_A          187 LMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE---NNAPLFIRAVNSVASTTGAPPWANLVSIL  263 (339)
T ss_dssp             HTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHCCCTTHHHHHHH
T ss_pred             HHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc---ccchHHHHHHHHhhhccCCCcHHHHHHHH
Confidence            666666666677566689999999988788888899999999844443   44444433212         256899999


Q ss_pred             c----CCchhHHHHHHHHHHhcC-CCc--hhHHHH----hcCcHHHHHHHHH
Q 015728          244 H----HNSEASDAGVRAFSALCS-TET--NRKTLV----QEGAINGLIAYIS  284 (401)
Q Consensus       244 ~----~~~~~~~~a~~aL~~Ls~-~~~--n~~~iv----~~G~v~~Lv~lL~  284 (401)
                      .    .+.+.+.+|...|-.+-. .++  .+..++    +.|.=..+.++|.
T Consensus       264 ~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~  315 (339)
T 3dad_A          264 EEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLG  315 (339)
T ss_dssp             TTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred             hccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHh
Confidence            3    355688887776665542 232  233443    3455455666666

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.73  E-value=0.013  Score=49.41  Aligned_cols=211  Identities=11%  Similarity=0.140  Sum_probs=140.1

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhh-cCCHHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFE-HGSCSIKKRLCHLVEV  214 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~-~~~~~~~~~aa~~L~~  214 (401)
                      ..++..++.+|.+.-..        +|.+|+. ++..++...++..     ...+..|+.+++ +.....-+..+.+++.
T Consensus        31 ~~~l~~lI~~LDDDlwt--------V~kNAl~-vi~~i~~~~~el~-----epl~~kL~vm~~ksEaIpltqeIa~a~G~   96 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWT--------VVKNAIS-IIMVIAKTREDLY-----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQ   96 (253)
T ss_dssp             HHHHHHHHHHTTCSCHH--------HHHHHHH-HHHHHHTTCGGGH-----HHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHH--------HHHhHHH-HHHHHHHHhHHHH-----HHHHHHHHHHHhhcccCchHHHHHHHHhH
Confidence            34677888988766543        8999999 8888875443332     224666666665 4566776677789999


Q ss_pred             HHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccch
Q 015728          215 IISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERS  292 (401)
Q Consensus       215 l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~  292 (401)
                      + +.      .+..++.  +.+|.+..=.+ ++++.+.+-..+|-.++. +|+--.     +++.-+..+|.   +++..
T Consensus        97 l-a~------i~Pe~v~--~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smlt---skd~~  159 (253)
T 2db0_A           97 M-AK------EKPELVK--SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLS---SKNRE  159 (253)
T ss_dssp             H-HH------HCHHHHH--HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTS---CSSHH
T ss_pred             H-HH------hCHHHHH--hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhc---CCChH
Confidence            8 53      3444433  56677776664 678899999999998885 444333     34555677777   45533


Q ss_pred             HHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh
Q 015728          293 LAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQ  372 (401)
Q Consensus       293 ~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~  372 (401)
                         .=+.+|..+..-++|.-.-+.  -..|.|.. ++.+.+..++..|+.+|.+++..++..|+.+.      .-+.-+.
T Consensus       160 ---Dkl~aLnFi~alGen~~~yv~--PfLprL~a-LL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~  227 (253)
T 2db0_A          160 ---DKLTALNFIEAMGENSFKYVN--PFLPRIIN-LLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELN  227 (253)
T ss_dssp             ---HHHHHHHHHHTCCTTTHHHHG--GGHHHHHG-GGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCC
T ss_pred             ---HHHHHHHHHHHHhccCccccC--cchHHHHH-HHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhc
Confidence               334455555555555544432  46888988 68888988999999999999999888774433      2344444


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 015728          373 SQCSNRTKTKARMLLKLL  390 (401)
Q Consensus       373 ~~~~~~~~~~A~~~L~~l  390 (401)
                      +. ++-+++.....|..+
T Consensus       228 D~-S~lv~~~V~egL~rl  244 (253)
T 2db0_A          228 DT-SSLVNKTVKEGISRL  244 (253)
T ss_dssp             CS-CHHHHHHHHHHHHHH
T ss_pred             Cc-HHHHHHHHHHHHHHH
Confidence            54 666666666555544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.72  E-value=0.00016  Score=63.37  Aligned_cols=223  Identities=11%  Similarity=0.059  Sum_probs=149.0

Q ss_pred             CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC--chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 015728          137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG--ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEV  214 (401)
Q Consensus       137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~--~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~  214 (401)
                      +.+..|..+|.+.+        +.++.+++. ++..+...  +.-....+  ...++.++.++++.+..+..+|..+|..
T Consensus        33 ~~l~~L~~LL~dkD--------~~vk~raL~-~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~dEkval~A~r~L~~  101 (265)
T 3b2a_A           33 RALFLILELAGEDD--------ETTRLRAFV-ALGEILKRADSDLRMMVL--ERHLDVFINALSQENEKVTIKALRALGY  101 (265)
T ss_dssp             HHHHHHHHHTTSSC--------HHHHHHHHH-HHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCSTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhccc--------hHHHHHHHH-HHHHHHHhccccccHHHH--HHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            35778899997665        569999999 77766633  22223333  3569999999999999999999999999


Q ss_pred             HHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchH
Q 015728          215 IISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSL  293 (401)
Q Consensus       215 l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~  293 (401)
                      |....+   -......   -++..|..++ +++.-.+.+|+..|..|......      .+++..|..++.   +.+.++
T Consensus       102 LLe~vp---L~~~~y~---Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~---Skd~~v  166 (265)
T 3b2a_A          102 LVKDVP---MGSKTFL---KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVV---SPDLYT  166 (265)
T ss_dssp             HHTTCC---BCHHHHH---HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHT---CSSHHH
T ss_pred             HHcCCC---CCHHHHH---HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHh---CCChhH
Confidence            855443   1122221   2456777777 45666999999999999432222      236678889996   899999


Q ss_pred             HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHH-HHHcCcHHHHHH-Hh
Q 015728          294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREE-AICAGVLTQLLL-LL  371 (401)
Q Consensus       294 ~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~v~~L~~-ll  371 (401)
                      +..++.+|.+++...+...-+-   ..+..+-. ++++.++...+.|+.+|..+.+..  ..+. +-+.-.+...+. +.
T Consensus       167 K~agl~~L~eia~~S~D~~i~~---~I~~eI~e-lL~~eD~~l~e~aLd~Le~ils~p--i~~~~~~~~~~~~~~v~~l~  240 (265)
T 3b2a_A          167 KVAGFCLFLNMLNSSADSGHLT---LILDEIPS-LLQNDNEFIVELALDVLEKALSFP--LLENVKIELLKISRIVDGLV  240 (265)
T ss_dssp             HHHHHHHHHHHGGGCSSCCCGG---GTTTTHHH-HHTCSCHHHHHHHHHHHHHHTTSC--CCSCCHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHhhcccCCHHHHH---HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCc--ccHhHHHHHHHHHHHHHHHH
Confidence            9999999999996433222221   22333445 566778999999999999998763  1111 111112222222 22


Q ss_pred             -hcCCCHHHHHHHHHHHHHHHH
Q 015728          372 -QSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       372 -~~~~~~~~~~~A~~~L~~l~~  392 (401)
                       ..| .|..|.+|...-..+..
T Consensus       241 ~~~~-~~~~~~ka~~v~~~le~  261 (265)
T 3b2a_A          241 YREG-APIIRLKAKKVSDLIDS  261 (265)
T ss_dssp             GCSS-CHHHHHHHHHHHHHHHH
T ss_pred             HhcC-ChhHHHHHHHHHHHHHH
Confidence             244 88999999887666543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.72  E-value=2.4e-05  Score=58.55  Aligned_cols=45  Identities=9%  Similarity=0.006  Sum_probs=38.7

Q ss_pred             cccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           14 RCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        14 ~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      .|++|.-.+..-.. +||+|.||..|+..|..++...||.|+.++.
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            69999988876554 6999999999999999878889999997754

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.70  E-value=3.4e-05  Score=55.40  Aligned_cols=48  Identities=15%  Similarity=0.270  Sum_probs=38.9

Q ss_pred             cccccccccccCCceEc-CccccccHHhHHHHHHcC-CCCCCCCcccCCC
Q 015728           12 LFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHD   59 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~   59 (401)
                      .-.|.||.+++..-..- .|+|.|-..||.+|++.. ..+||.|+.....
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            45799999988754443 699999999999999853 3789999987653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.68  E-value=0.00078  Score=62.44  Aligned_cols=144  Identities=9%  Similarity=0.063  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHH-hcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHH
Q 015728          248 EASDAGVRAFSA-LCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVK  326 (401)
Q Consensus       248 ~~~~~a~~aL~~-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~  326 (401)
                      +.++.++.-|.. ++.+.+=...+++.|++..|+.+..   .++...+..++.+|.+|-....|...++.++..|..++.
T Consensus       133 ~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~---~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lys  209 (339)
T 3dad_A          133 PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA---AADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYT  209 (339)
T ss_dssp             HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT---TSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH---hcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHH
Confidence            456666777776 5567778899999999999999998   568889999999999999999999888878889999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CcHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHhh
Q 015728          327 MVFRVSDHEGSENAINSLMMICCDSLQAREEAIC--------A--GVLTQLLLLLQ--SQCSNRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       327 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~--g~v~~L~~ll~--~~~~~~~~~~A~~~L~~l~~~~  394 (401)
                       +..+....+.+.|+.+|..++..++.....+.+        .  --.+.|+.+|+  .+.+...+.+|-.++.-+-..-
T Consensus       210 -lv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~a  288 (339)
T 3dad_A          210 -LCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAAL  288 (339)
T ss_dssp             -GGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred             -HHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcC
Confidence             566677788999999999998776422222221        1  13778999997  2337888888888887665543


Q ss_pred             H
Q 015728          395 A  395 (401)
Q Consensus       395 ~  395 (401)
                      |
T Consensus       289 p  289 (339)
T 3dad_A          289 P  289 (339)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.68  E-value=0.00013  Score=80.72  Aligned_cols=234  Identities=12%  Similarity=0.119  Sum_probs=146.4

Q ss_pred             hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 015728          139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISS  218 (401)
Q Consensus       139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~  218 (401)
                      ++.|+.-+.+++        ++++..|.. -|.+....+.....--.....++.++..|.+.+.++|..|+.+|..+ ..
T Consensus         8 l~~lL~~l~s~d--------~~~R~~A~~-~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l-~~   77 (1230)
T 1u6g_C            8 ISNLLEKMTSSD--------KDFRFMATN-DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL-VS   77 (1230)
T ss_dssp             HHHHHHHTTCSS--------HHHHHHHHH-HHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH-HT
T ss_pred             HHHHHHhcCCCC--------HhHHHHHHH-HHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HH
Confidence            555666666666        448888877 44433222100000000123577888889888999999999999999 43


Q ss_pred             ccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchh------HHHHhcCcHHHHHHHHHhhccccc
Q 015728          219 SHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETNR------KTLVQEGAINGLIAYISNALTRER  291 (401)
Q Consensus       219 ~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~------~~iv~~G~v~~Lv~lL~~~~~~~~  291 (401)
                      .-.  +  ..+   ..+++.|+..| +++..++..|+.+|..++..-...      ..-.-...+|.|++.+.+  +.+.
T Consensus        78 ~~~--~--~~~---~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~--~~~~  148 (1230)
T 1u6g_C           78 KVK--E--YQV---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK--QEDV  148 (1230)
T ss_dssp             TSC--H--HHH---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC--CSCH
T ss_pred             hCC--H--HHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC--CCch
Confidence            221  1  111   24677888877 456678889999999887422211      111223588889998873  3567


Q ss_pred             hHHHHHHHHHHHHhCCHhhHHHHHh-CCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHH
Q 015728          292 SLAAIAMARIEQLLAIENSKDALIN-NPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLL  370 (401)
Q Consensus       292 ~~~~~a~~~L~~La~~~~~~~~~~~-~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~l  370 (401)
                      .++..|+.+|..++.....  .+.. ....++.|+. .+.+.++.+++.|+.+|..++...++   .+ -...++.|+..
T Consensus       149 ~~~~~al~~l~~~~~~~~~--~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~  221 (1230)
T 1u6g_C          149 SVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSE  221 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHH
Confidence            8899999999998842110  0100 0123455555 35566778999999999999876432   12 34568888888


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          371 LQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       371 l~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      +....+...|..|...+..+.+..|..+
T Consensus       222 L~~~~~~~~r~~a~~~l~~l~~~~~~~~  249 (1230)
T 1u6g_C          222 LSKNDSMSTTRTYIQCIAAISRQAGHRI  249 (1230)
T ss_dssp             HHHTCSSCSCTTHHHHHHHHHHHSSGGG
T ss_pred             hccCCchhHHHHHHHHHHHHHHHhHHHH
Confidence            8766345677788888888887655543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.61  E-value=0.0016  Score=61.59  Aligned_cols=253  Identities=11%  Similarity=0.035  Sum_probs=136.9

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhccc
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNE  186 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~  186 (401)
                      -++..++.++.++-.+....+..-+... ....+..++++.+.+..        .+.-.-- .+.+++...++  .++  
T Consensus        39 ~~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~--------lKrLvYL-yl~~~~~~~~e--~iL--  104 (355)
T 3tjz_B           39 INPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPT--------LRRMCYL-TIKEMSCIAED--VII--  104 (355)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHH--------HHHHHHH-HHHHHTTTSSC--GGG--
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHH--------HHHHHHH-HHHHhCCCHHH--HHH--
Confidence            3455556677777777766543211111 12355667777776642        3332222 33344433222  123  


Q ss_pred             CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCc
Q 015728          187 ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTET  265 (401)
Q Consensus       187 ~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~  265 (401)
                        ++..+.+-++++++-.|-.|.++|+++ ...+        +.  +.+.+.+...| +.++-+++.|+-+...|.....
T Consensus       105 --v~Nsl~kDl~~~N~~iR~lALRtL~~I-~~~~--------m~--~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p  171 (355)
T 3tjz_B          105 --VTSSLTKDMTGKEDSYRGPAVRALCQI-TDST--------ML--QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF  171 (355)
T ss_dssp             --GHHHHHHHHHSSCHHHHHHHHHHHHHH-CCTT--------TH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH
T ss_pred             --HHHHHHhhcCCCcHhHHHHHHHHHhcC-CCHH--------HH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH
Confidence              477778888888999999999999888 4322        11  24556677777 4566699999999888874332


Q ss_pred             hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh-hHHHHH---hCC-----------------------
Q 015728          266 NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN-SKDALI---NNP-----------------------  318 (401)
Q Consensus       266 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~-~~~~~~---~~~-----------------------  318 (401)
                      .   +++ +.++.+-+++.   +.+.-++-+|+.+|..+...+. .-..++   .+.                       
T Consensus       172 e---~v~-~~~~~l~~ll~---d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~  244 (355)
T 3tjz_B          172 D---VVK-RWVNEAQEAAS---SDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED  244 (355)
T ss_dssp             H---HHH-TTHHHHHHHTT---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----
T ss_pred             H---HHH-HHHHHHHHHhc---CCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc
Confidence            2   333 68888888888   6777888889998888886332 111111   010                       


Q ss_pred             -CcHHHHHHH---HHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728          319 -NGVYALVKM---VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       319 -g~i~~Lv~~---l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  394 (401)
                       +.-..+++.   ++++.++.+.-.|++++..+...+..     ....++..|..++.+. ++..|-.|...|..+...+
T Consensus       245 ~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~-----~~~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~  318 (355)
T 3tjz_B          245 GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK-----ELAPAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKH  318 (355)
T ss_dssp             ------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------
T ss_pred             hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH-----HHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHC
Confidence             111111111   12334455666677777776442211     1234456677777776 8899999999999998888


Q ss_pred             HHhhc
Q 015728          395 AEELK  399 (401)
Q Consensus       395 ~e~~~  399 (401)
                      |+-++
T Consensus       319 P~~v~  323 (355)
T 3tjz_B          319 PSAVT  323 (355)
T ss_dssp             -----
T ss_pred             cHHHH
Confidence            87654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.60  E-value=0.012  Score=62.68  Aligned_cols=264  Identities=11%  Similarity=0.061  Sum_probs=164.8

Q ss_pred             hhhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728           92 IDSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ  170 (401)
Q Consensus        92 ~~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L  170 (401)
                      ....+.+++.+..-.+ .   ..|+..+..++...... ...-.=-+.+|.++..+.+...        .+++.|..++.
T Consensus        53 ~~~~~~~~~~~~~k~~-~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~--------~v~~aa~~~~~  120 (986)
T 2iw3_A           53 EHFFGELAKGIKDKKT-A---ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDK--------EIQSVASETLI  120 (986)
T ss_dssp             HHHHHHHHHHHTSHHH-H---HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSH--------HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhccCC-H---HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCch--------HHHHHHHHHHH
Confidence            3566666666653322 1   77888888888655321 1111123567888887765543        36655554222


Q ss_pred             HhhcCCchhhhhhcccCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcccchhhhhhhhcc-chHHHHHHHHHc-cCCc
Q 015728          171 KLLLVGETESLNLLNEESKMESFIVLFEHG-SCSIKKRLCHLVEVIISSSHETKELCCKLGK-DDRLLREIISLV-HHNS  247 (401)
Q Consensus       171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~-~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~-~~g~i~~Lv~lL-~~~~  247 (401)
                      ..+..-+.+..     ...+|.|+..|+++ ....+..|..+|..| ....     ...++. -..+||.+-..+ +...
T Consensus       121 ~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~-~~~~-----~~~~~~~~~~~~p~~~~~~~d~k~  189 (986)
T 2iw3_A          121 SIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAM-VDAA-----KDQVALRMPELIPVLSETMWDTKK  189 (986)
T ss_dssp             HHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHS-----HHHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHH-HHHh-----HHHHHHhccchhcchHhhcccCcH
Confidence            22222222222     23589999999766 579999999999999 5332     222321 134666666666 5577


Q ss_pred             hhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC---CHhhHHHHHhCCCcHHHH
Q 015728          248 EASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA---IENSKDALINNPNGVYAL  324 (401)
Q Consensus       248 ~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~---~~~~~~~~~~~~g~i~~L  324 (401)
                      +++++|..++..+|..-+|+..   ...||.|++.+.   +++  -...++..|..-.-   -..--..+     .+|-|
T Consensus       190 ~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~---~p~--~~~~~~~~l~~~tfv~~v~~~~l~~-----~~p~l  256 (986)
T 2iw3_A          190 EVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIA---DPT--EVPETVHLLGATTFVAEVTPATLSI-----MVPLL  256 (986)
T ss_dssp             HHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHH---CTT--HHHHHHHHHTTCCCCSCCCHHHHHH-----HHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhc---Chh--hhHHHHHHhhcCeeEeeecchhHHH-----HHHHH
Confidence            8999999999999987777653   357999999998   332  23334433332221   11111222     26666


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHhcCCH--HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728          325 VKMVFRVSDHEGSENAINSLMMICCDSL--QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       325 v~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  393 (401)
                      .+- ++..+...++.++-+.-|+|+--+  ... .-.--..+|-|-.....-..|++|+.|..++..|.+.
T Consensus       257 ~r~-l~~~~~~~~r~~~~~~~n~~~lv~~~~~~-~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          257 SRG-LNERETGIKRKSAVIIDNMCKLVEDPQVI-APFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHH-HTSSSHHHHHHHHHHHHHHHTTCCCHHHH-HHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             Hhh-hccCcchhheeeEEEEcchhhhcCCHHHH-hhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            664 566677889999999999998733  222 3334556666666665556899999999999999884

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00091  Score=60.25  Aligned_cols=188  Identities=10%  Similarity=0.158  Sum_probs=124.6

Q ss_pred             HHHhhhhhhcChHHHHHHHHHHHH-HHhcCchhhhHHHh-cCChHHHHHHh-ccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           98 LKHSLQSHEATLETKLQIVQKIHV-VLRESPPASNCLIQ-LGFLPLLLKQL-FGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        98 l~~~l~~~~~~~~~~~~a~~~L~~-l~~~~~~~r~~i~~-~G~i~~Lv~lL-~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      |-+.++  ++++.+|.+|+..|.. ++.+.+.....-.+ ...+..|...+ ++.+        ..++..|+. ++..|+
T Consensus        21 f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n--------~~v~~~A~~-al~~la   89 (249)
T 2qk1_A           21 FQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN--------IQAVALAAQ-SVELIC   89 (249)
T ss_dssp             HHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC--------HHHHHHHHH-HHHHHH
T ss_pred             HHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC--------HHHHHHHHH-HHHHHH
Confidence            344453  4689999999999999 88664432210001 13466777777 3443        457888888 787777


Q ss_pred             CCchhhh-hhcc---cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchh
Q 015728          175 VGETESL-NLLN---EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEA  249 (401)
Q Consensus       175 ~~~~~~~-~~v~---~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~  249 (401)
                      .+   .+ .-+.   -.-.+|.++..++.....++..+..+|..++...+   ..... ..-..+++.|...|+ .+..+
T Consensus        90 ~~---l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~---~~~~~-~~l~~ll~~l~~~l~~k~~~v  162 (249)
T 2qk1_A           90 DK---LKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD---PLASS-GRNEDMLKDILEHMKHKTPQI  162 (249)
T ss_dssp             HH---HCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC---TTCTT-CTTHHHHHHHHHHTTCSSHHH
T ss_pred             Hh---cccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc---ccccC-CcHHHHHHHHHHHHcCCChHH
Confidence            21   12 1221   01258899999988888999988888888832221   11110 002357888999884 56779


Q ss_pred             HHHHHHHHHHhcCCCch-hHH---HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          250 SDAGVRAFSALCSTETN-RKT---LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       250 ~~~a~~aL~~Ls~~~~n-~~~---iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      +..++.+|..+...... ...   .+....+|.|.+++.   +++.++++.|..+|..++.
T Consensus       163 k~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~---D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          163 RMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN---DTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence            99999999988843321 122   233569999999998   7889999999999998763

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.40  E-value=0.0002  Score=49.19  Aligned_cols=49  Identities=18%  Similarity=0.313  Sum_probs=39.5

Q ss_pred             CcccccccccccCCceEcCcc--c---cccHHhHHHHHHc-CCCCCCCCcccCCC
Q 015728           11 HLFRCPISLDLFTDPVTLCTG--Q---TYDRSSIEKWLAA-GNLTCPVTMQTLHD   59 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~~Cg--h---~fc~~Ci~~~~~~-~~~~CP~c~~~~~~   59 (401)
                      +.-.|.||++...+|...||.  +   .|-..|+.+|+.. +..+||.|+..+..
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            345799999887788878865  3   7899999999985 57889999987753

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.39  E-value=0.0071  Score=58.81  Aligned_cols=222  Identities=14%  Similarity=0.113  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHhhcCCchhhhhhcccCC--chHHHHHHhhc---------------C--CHHHHHHHHHHHHHHHhcccch
Q 015728          162 VEESLSCVQKLLLVGETESLNLLNEES--KMESFIVLFEH---------------G--SCSIKKRLCHLVEVIISSSHET  222 (401)
Q Consensus       162 ~~~a~~~~L~~l~~~~~~~~~~v~~~g--~i~~Lv~~L~~---------------~--~~~~~~~aa~~L~~l~s~~~~~  222 (401)
                      +.-++. .|..|...+ ..|..+.+.+  .+++++.+++.               +  ..+.+.++..+++.| +...  
T Consensus       185 ~~i~v~-~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~--  259 (480)
T 1ho8_A          185 CYVCIR-LLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNP--  259 (480)
T ss_dssp             HHHHHH-HHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSH--
T ss_pred             HHHHHH-HHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHH-HcCH--
Confidence            444555 555454433 4455553333  36777654431               1  246688999999999 8875  


Q ss_pred             hhhhhhhccchHHH--HHHHHHcc--CCchhHHHHHHHHHHhcCCC-ch----hHHHHhcCcHHHHHHHHHhhccccchH
Q 015728          223 KELCCKLGKDDRLL--REIISLVH--HNSEASDAGVRAFSALCSTE-TN----RKTLVQEGAINGLIAYISNALTRERSL  293 (401)
Q Consensus       223 ~~~~~~i~~~~g~i--~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~-~n----~~~iv~~G~v~~Lv~lL~~~~~~~~~~  293 (401)
                       +....+... +++  +.|+.+++  ....+.+-++.+|+||.... ++    ...++-.|-+++++..|....=+|+++
T Consensus       260 -~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl  337 (480)
T 1ho8_A          260 -VFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEEL  337 (480)
T ss_dssp             -HHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHH
T ss_pred             -HHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHH
Confidence             556666543 433  67777784  34569999999999998644 22    233332233477888887543345666


Q ss_pred             HHHHHHHHHHHhC-------CHhhH------------------------HHHHh-CCCcHHHHHHHHHhc----------
Q 015728          294 AAIAMARIEQLLA-------IENSK------------------------DALIN-NPNGVYALVKMVFRV----------  331 (401)
Q Consensus       294 ~~~a~~~L~~La~-------~~~~~------------------------~~~~~-~~g~i~~Lv~~l~~~----------  331 (401)
                      .+.--.....|..       -+++.                        .++-. +...+..|+++ +..          
T Consensus       338 ~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~i-L~~~~~~~~~~~s  416 (480)
T 1ho8_A          338 RQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIEL-LQAKVRNGDVNAK  416 (480)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHH-HHHHHHTTCCCSH
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHH-HhhhccccccccC
Confidence            5554433333322       11222                        22311 11257788884 442          


Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          332 SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .++.....|+.=+..++.+.++.|..+-+-|+=..++.||.++ ++.+|..|...++.+-.
T Consensus       417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            2444555566667778888888888888999999999999888 99999999998887755

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.35  E-value=0.029  Score=59.25  Aligned_cols=245  Identities=9%  Similarity=0.040  Sum_probs=151.5

Q ss_pred             hHHHHHHhhhhh-hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           94 SLSTLKHSLQSH-EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        94 ~~~~l~~~l~~~-~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +++.+.+-|-.. ++++..+-.|+..|......+-.   .     ++..|...|.+.+....+..++.++..|+- -|..
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL-GLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASL-GIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---H-----HHHHHHHHHcCccccccccccHHHHHHHHH-HHHH
Confidence            444444444322 34566777788777777665531   1     366777777654410000011335555555 5554


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-c-CCchhH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-H-HNSEAS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~-~~~~~~  250 (401)
                      +..+..       +...+..|..+|...+...++.|+.+|..+ -...          ....++..|+..+ + .+...+
T Consensus       464 a~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli-~vGT----------gn~~ai~~LL~~~~e~~~e~vr  525 (963)
T 4ady_A          464 AAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLC-MLGT----------GKPEAIHDMFTYSQETQHGNIT  525 (963)
T ss_dssp             HSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTC----------CCHHHHHHHHHHHHHCSCHHHH
T ss_pred             HhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hccc----------CCHHHHHHHHHHHhccCcHHHH
Confidence            433221       112467778888777777777888888877 3322          1125677777776 3 345688


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR  330 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~  330 (401)
                      +.++.+|..+....        ...++.+++.|..  +.++.++-.++.++..-.....       +..+|..|++.+..
T Consensus       526 R~aalgLGll~~g~--------~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTG-------n~~aIq~LL~~~~~  588 (963)
T 4ady_A          526 RGLAVGLALINYGR--------QELADDLITKMLA--SDESLLRYGGAFTIALAYAGTG-------NNSAVKRLLHVAVS  588 (963)
T ss_dssp             HHHHHHHHHHTTTC--------GGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhCCC--------hHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHhcc
Confidence            88888888776432        2467788899984  4556666666666653332222       22356678886676


Q ss_pred             cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                      +.+..++..|+.+|..+...++         ..++.++.++....++.+|..|+.+|..+.
T Consensus       589 d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~  640 (963)
T 4ady_A          589 DSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC  640 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence            7777899999999998876653         246677775544448999999999999885

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.30  E-value=0.012  Score=60.07  Aligned_cols=243  Identities=10%  Similarity=0.027  Sum_probs=133.4

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccC
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEE  187 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~  187 (401)
                      +.+.|+-+--.+..++..+++.-..     ++..+.+=|.+++        +.++..|+. .|.++..  ++..     .
T Consensus        87 ~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n--------~~ir~lALr-~L~~i~~--~e~~-----~  145 (621)
T 2vgl_A           87 RYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRN--------PTFMGLALH-CIANVGS--REMA-----E  145 (621)
T ss_dssp             CHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCC--------HHHHHHHHH-HHHHHCC--HHHH-----H
T ss_pred             CHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCC--------HHHHHHHHH-HhhccCC--HHHH-----H
Confidence            4455555555555555444321111     1344444455544        447778888 7777752  2222     2


Q ss_pred             CchHHHHHHh--hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCC
Q 015728          188 SKMESFIVLF--EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSALCSTE  264 (401)
Q Consensus       188 g~i~~Lv~~L--~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~  264 (401)
                      ..++.+...|  .+.++.+|..|+.++.++ ....     ...+ ...+.++.|..+|. .++.++.+|+.+|..++...
T Consensus       146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl-~~~~-----p~~~-~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMDSVKQSAALCLLRL-YRTS-----PDLV-PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             HHTTHHHHHHHCSSSCHHHHHHHHHHHHHH-HHHC-----GGGC-CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHhC-----hhhc-CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence            3478888888  778999999999999999 4322     1222 22367899999994 56679999999999998533


Q ss_pred             chhHHHHhcCcHHHHHHHHHhhc-cc-------------cchHHHHHHHHHHHHhCC--HhhHHHHHhCCCcHHHHHHHH
Q 015728          265 TNRKTLVQEGAINGLIAYISNAL-TR-------------ERSLAAIAMARIEQLLAI--ENSKDALINNPNGVYALVKMV  328 (401)
Q Consensus       265 ~n~~~iv~~G~v~~Lv~lL~~~~-~~-------------~~~~~~~a~~~L~~La~~--~~~~~~~~~~~g~i~~Lv~~l  328 (401)
                      ..  .+  ...+|.+++.|..-- .+             ++-.+...+..|..++..  ++.+..+.   ..+..++..+
T Consensus       219 ~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~---~~L~~il~~~  291 (621)
T 2vgl_A          219 PE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT---ECLETILNKA  291 (621)
T ss_dssp             HH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH---HHHHHHHHHH
T ss_pred             hH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHHHHHhh
Confidence            21  11  134555555543100 11             345667777777777752  34444333   1333343321


Q ss_pred             HhcC----------ChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          329 FRVS----------DHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       329 ~~~~----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ....          ...+.-.|+.++..+.. +++.+.     .++..|..++.+. ++..|.-|...|..+..
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~  358 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLAS  358 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTT
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHh
Confidence            1100          11334445555555542 222221     2344555665544 56666666666665554

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.89  E-value=0.00016  Score=66.73  Aligned_cols=47  Identities=21%  Similarity=0.371  Sum_probs=37.3

Q ss_pred             cccccccccccCC----ceE----cCccccccHHhHHHHHHcC----------CCCCCCCcccCC
Q 015728           12 LFRCPISLDLFTD----PVT----LCTGQTYDRSSIEKWLAAG----------NLTCPVTMQTLH   58 (401)
Q Consensus        12 ~~~C~iC~~~~~~----Pv~----~~Cgh~fc~~Ci~~~~~~~----------~~~CP~c~~~~~   58 (401)
                      ...|+||.+++.+    |..    ..|||.|...|+.+|+...          ...||.|+.+++
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            4579999998876    432    3699999999999999851          146999998775

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.81  E-value=0.19  Score=42.45  Aligned_cols=214  Identities=13%  Similarity=0.170  Sum_probs=137.2

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +.++.+.+.|  .++-+-.|.+|+..+...++.-++...-+     +..|+.+++.+..       -.+-.+... .++.
T Consensus        32 ~~l~~lI~~L--DDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEa-------IpltqeIa~-a~G~   96 (253)
T 2db0_A           32 SVLKKLIELL--DDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEA-------IPLTQEIAK-AFGQ   96 (253)
T ss_dssp             HHHHHHHHHT--TCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCS-------HHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHh--ccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhccc-------CchHHHHHH-HHhH
Confidence            3444444433  23345689999999999998877655544     5567777754432       223334445 6666


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASD  251 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~  251 (401)
                      ++.-.++   ++  .+.+|.+..=.+-|++..+.+.+.+|..+ ....     -..+   .+++.-+..++. .+..-+.
T Consensus        97 la~i~Pe---~v--~~vVp~lfanyrigd~kikIn~~yaLeeI-aran-----P~l~---~~v~rdi~smltskd~~Dkl  162 (253)
T 2db0_A           97 MAKEKPE---LV--KSMIPVLFANYRIGDEKTKINVSYALEEI-AKAN-----PMLM---ASIVRDFMSMLSSKNREDKL  162 (253)
T ss_dssp             HHHHCHH---HH--HHHHHHHHHHSCCCSHHHHHHHHHHHHHH-HHHC-----HHHH---HHHHHHHHHHTSCSSHHHHH
T ss_pred             HHHhCHH---HH--HhhHHHHHHHHhcCCccceecHHHHHHHH-HHhC-----hHHH---HHHHHHHHHHhcCCChHHHH
Confidence            6533332   22  23467777777788999999999999999 5432     2222   356677788884 4545666


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728          252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV  331 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~  331 (401)
                      .|+..+..+.   +|..+-+. -.+|.|..||.   +.++-++..|+.+|.+|+..+..-+.++     +..|-+  +.+
T Consensus       163 ~aLnFi~alG---en~~~yv~-PfLprL~aLL~---D~deiVRaSaVEtL~~lA~~npklRkii-----~~kl~e--~~D  228 (253)
T 2db0_A          163 TALNFIEAMG---ENSFKYVN-PFLPRIINLLH---DGDEIVRASAVEALVHLATLNDKLRKVV-----IKRLEE--LND  228 (253)
T ss_dssp             HHHHHHHTCC---TTTHHHHG-GGHHHHHGGGG---CSSHHHHHHHHHHHHHHHTSCHHHHHHH-----HHHHHH--CCC
T ss_pred             HHHHHHHHHh---ccCccccC-cchHHHHHHHc---CcchhhhHHHHHHHHHHHHcCHHHHHHH-----HHHHHH--hcC
Confidence            6666665554   44444443 26888999998   7888999999999999997554444443     233444  455


Q ss_pred             CChhHHHHHHHHHHHHhc
Q 015728          332 SDHEGSENAINSLMMICC  349 (401)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~  349 (401)
                      .+..++......|..|.-
T Consensus       229 ~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          229 TSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            555677777777766543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.45  E-value=0.73  Score=44.78  Aligned_cols=238  Identities=12%  Similarity=0.122  Sum_probs=144.4

Q ss_pred             hcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCch---hhhhhccc-CCchHHHHH-HhhcCCHHHHHHHH
Q 015728          135 QLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGET---ESLNLLNE-ESKMESFIV-LFEHGSCSIKKRLC  209 (401)
Q Consensus       135 ~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~---~~~~~v~~-~g~i~~Lv~-~L~~~~~~~~~~aa  209 (401)
                      ...++..++.+|.....       .++..+.+. ++.-|..+++   ....+..+ +.....+.. .+.+++.-.+..+.
T Consensus        75 ~~~~~~~~l~lL~~~~~-------~d~vqYvL~-Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~  146 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDN-------EDCKKSVQN-LIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGF  146 (480)
T ss_dssp             SSTTHHHHHHHHHSCCC-------HHHHHHHHH-HHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHH
T ss_pred             CchHHHHHHHHHhhcCh-------HHHHHHHHH-HHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHH
Confidence            45678889999976553       567888888 7776665554   22333222 222222333 23333334445555


Q ss_pred             HHHHHHHhcccchhhhhhhhccchHHHHHHHH------HccC--CchhHHHHHHHHHHhcCCCchhHHHHhcC--cHHHH
Q 015728          210 HLVEVIISSSHETKELCCKLGKDDRLLREIIS------LVHH--NSEASDAGVRAFSALCSTETNRKTLVQEG--AINGL  279 (401)
Q Consensus       210 ~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~------lL~~--~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G--~v~~L  279 (401)
                      .++..+ +...    .+    . ...++.++.      .|..  +...+.-++.+|..|...++.|..+.+.+  .+|++
T Consensus       147 ~l~~ll-~~~~----~~----~-~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l  216 (480)
T 1ho8_A          147 NVVSLL-VQNG----LH----N-VKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTL  216 (480)
T ss_dssp             HHHHHH-TSTT----TC----C-HHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHH-hccC----Cc----c-HhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHH
Confidence            454555 4322    11    1 233444443      3422  33456679999999999999999998653  58888


Q ss_pred             HHHHHhhc--------------cccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcH--HHHHHHHHhcCChhHHHHHHHH
Q 015728          280 IAYISNAL--------------TRERSLAAIAMARIEQLLAIENSKDALINNPNGV--YALVKMVFRVSDHEGSENAINS  343 (401)
Q Consensus       280 v~lL~~~~--------------~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i--~~Lv~~l~~~~~~~~~~~a~~~  343 (401)
                      ++++...-              +...+++=.++-+++.|+-.++....+. ..+.+  +.|++.+.....+++.+.++.+
T Consensus       217 ~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~-~~~i~~~~~L~~i~k~s~KEKvvRv~la~  295 (480)
T 1ho8_A          217 FKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELV-QKYLSDFLDLLKLVKITIKEKVSRLCISI  295 (480)
T ss_dssp             HHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             HHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHH-hcchHHHHHHHHHHHhhccchhHHHHHHH
Confidence            87776320              1123456678889999999988777775 55543  6777743333457899999999


Q ss_pred             HHHHhcCC----HHHHH-HHHHcCcHHHHHHHhhcC--CCHHHHHHHHHHHHHHHH
Q 015728          344 LMMICCDS----LQARE-EAICAGVLTQLLLLLQSQ--CSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       344 L~~l~~~~----~~~~~-~~~~~g~v~~L~~ll~~~--~~~~~~~~A~~~L~~l~~  392 (401)
                      |.|+...+    ..... .++..++ .+++..|+..  .++...+--..+...|.+
T Consensus       296 l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~  350 (480)
T 1ho8_A          296 ILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILEN  350 (480)
T ss_dssp             HHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Confidence            99998765    12223 3444555 5566666543  356666666666665555

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.14  E-value=0.0025  Score=48.65  Aligned_cols=33  Identities=12%  Similarity=0.125  Sum_probs=28.3

Q ss_pred             Cccccccccc-ccCCceE--cCccccccHHhHHHHH
Q 015728           11 HLFRCPISLD-LFTDPVT--LCTGQTYDRSSIEKWL   43 (401)
Q Consensus        11 ~~~~C~iC~~-~~~~Pv~--~~Cgh~fc~~Ci~~~~   43 (401)
                      +++.|++|.+ ++.+|+.  +.|+|+||..|+..+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            4688999996 4788988  8899999999999843

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.77  E-value=0.13  Score=54.74  Aligned_cols=247  Identities=13%  Similarity=0.099  Sum_probs=154.6

Q ss_pred             ChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh--h-hhc
Q 015728          108 TLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES--L-NLL  184 (401)
Q Consensus       108 ~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~--~-~~v  184 (401)
                      +.+++..|+..|..+...+...+  ....|.+..|.+.+.+..+         . |.|+. ++..|+......  . ..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~---------~-~~a~~-~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           27 TADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKT---------A-ANAMQ-AVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             CTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHH---------H-HHHHH-HHHHHTCTTTCCTTTHHHH
T ss_pred             chhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCC---------H-HHHHH-HHHHHHHhcCCCCCcccch
Confidence            35677888889998887553221  1124677788887765431         2 77777 777777433221  1 112


Q ss_pred             ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC--CchhHHHHHHHHHHhcC
Q 015728          185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH--NSEASDAGVRAFSALCS  262 (401)
Q Consensus       185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~a~~aL~~Ls~  262 (401)
                      .  +.++.+++........+|..|..++..++...+     ...+   ..++|.|+..|..  .-+.+..|+.+|..|+.
T Consensus        94 ~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~-----~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           94 V--QLVPAICTNAGNKDKEIQSVASETLISIVNAVN-----PVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             H--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC-----GGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC-----HHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            1  456777777666667888888777777743333     2222   3678999999942  34689999999999985


Q ss_pred             CCchhHHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          263 TETNRKTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       263 ~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                      ..  ..++..  ...||.+.+.+.   +...+++..|..++..+|..-.|+..    +..||.||+.|.+. + + ...+
T Consensus       164 ~~--~~~~~~~~~~~~p~~~~~~~---d~k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p-~-~-~~~~  231 (986)
T 2iw3_A          164 AA--KDQVALRMPELIPVLSETMW---DTKKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADP-T-E-VPET  231 (986)
T ss_dssp             HS--HHHHHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCT-T-H-HHHH
T ss_pred             Hh--HHHHHHhccchhcchHhhcc---cCcHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcCh-h-h-hHHH
Confidence            43  233332  357888888887   67889999999999999865444432    24699999965543 3 2 3334


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          341 INSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +..|.+-..-.. +-.. .-+=.+|.|..=|... +..++++++-+...++|
T Consensus       232 ~~~l~~~tfv~~-v~~~-~l~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~  280 (986)
T 2iw3_A          232 VHLLGATTFVAE-VTPA-TLSIMVPLLSRGLNER-ETGIKRKSAVIIDNMCK  280 (986)
T ss_dssp             HHHHTTCCCCSC-CCHH-HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHhhcCeeEee-ecch-hHHHHHHHHHhhhccC-cchhheeeEEEEcchhh
Confidence            555544332211 1000 0001234444445555 88899999999999887

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.67  E-value=0.079  Score=48.02  Aligned_cols=195  Identities=9%  Similarity=0.027  Sum_probs=112.2

Q ss_pred             chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc---hhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCC
Q 015728          189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE---TKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTE  264 (401)
Q Consensus       189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~---~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~  264 (401)
                      .+| |-+.|.+.+...|..|...|..+......   .++....+..   .++.+-..+ +.+..++..++.+|..+...-
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~---~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~   86 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWR---DPTLFAQYITDSNVVAQEQAIVALNSLIDAF   86 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTS---CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence            355 66788899999999999888776343210   0011111222   234445566 456678999999998876422


Q ss_pred             c----hhHHH--HhcCcHHHHHHH-HHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHH
Q 015728          265 T----NRKTL--VQEGAINGLIAY-ISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGS  337 (401)
Q Consensus       265 ~----n~~~i--v~~G~v~~Lv~l-L~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~  337 (401)
                      .    .+...  .-..++|.|++- |.   +....+++.|..+|..++........      .+..++. .+...++.++
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~lveK~l~---~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~-~l~~Knpkv~  156 (278)
T 4ffb_C           87 ASSSLKNAHNITLISTWTPLLVEKGLT---SSRATTKTQSMSCILSLCGLDTSITQ------SVELVIP-FFEKKLPKLI  156 (278)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGG-GGGCSCHHHH
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHHhc---CccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHH-HHhccCHHHH
Confidence            1    12222  234567777765 55   55667888888888777632111111      1223333 3566788888


Q ss_pred             HHHHHHHHHHhcCCH-H-HHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          338 ENAINSLMMICCDSL-Q-AREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       338 ~~a~~~L~~l~~~~~-~-~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      ..++..|..+....+ . .-....-...++.+..++.+. ++.+|+.|..++..+-++.++.+
T Consensus       157 ~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~~G~~~  218 (278)
T 4ffb_C          157 AAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKVTGNNS  218 (278)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCcch
Confidence            888888877643211 0 000111112334566667666 99999999999999988777543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=95.21  E-value=0.014  Score=51.88  Aligned_cols=48  Identities=15%  Similarity=0.270  Sum_probs=38.8

Q ss_pred             cccccccccccCCceEc-CccccccHHhHHHHHHcC-CCCCCCCcccCCC
Q 015728           12 LFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAG-NLTCPVTMQTLHD   59 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~-~~~CP~c~~~~~~   59 (401)
                      ...|.+|.++...-+.- .|++.|...|+.+|++.. ...||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            45799999988865554 399999999999999853 4689999987544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.17  E-value=0.84  Score=40.48  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc-CCchhhhhhcccCC
Q 015728          110 ETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL-VGETESLNLLNEES  188 (401)
Q Consensus       110 ~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~-~~~~~~~~~v~~~g  188 (401)
                      .....|+..|+-+++ +++.|..+.+++..-.|--+|...+..+   ...-++-.+++ +.+.|. .++.+....+.+.+
T Consensus        71 nRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r---~fE~LRLtsLG-VIgaLvK~dd~eVi~fLL~tE  145 (268)
T 2fv2_A           71 NRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTR---PFEYLRLTSLG-VIGALVKTDEQEVINFLLTTE  145 (268)
T ss_dssp             HHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSH---HHHHHHHHHHH-HHHHHGGGCCHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCC---cchhhhhhHHH-HHHHHhccCcHHHHHHHHhhh
Confidence            455788888888886 5668888889998878888887665431   12335555666 555544 34445555556788


Q ss_pred             chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccch-------HHHHHHHHHc--cCCchhHHHHHHHHHH
Q 015728          189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDD-------RLLREIISLV--HHNSEASDAGVRAFSA  259 (401)
Q Consensus       189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~-------g~i~~Lv~lL--~~~~~~~~~a~~aL~~  259 (401)
                      .||..++.++.|+.-.|.-|+.++.++ =.++   ..-..+....       ..+..+|.-+  +.++...++..++-..
T Consensus       146 iiplCLrime~GselSKtvAtfIlqKI-L~dd---~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlR  221 (268)
T 2fv2_A          146 IIPLCLRIMESGSELSKTVATFILQKI-LLDD---TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLR  221 (268)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHH-HHSH---HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-hccc---hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            999999999999999999999999998 4443   3333333221       1333344433  3455688888888888


Q ss_pred             hcCCCchhHHHHh
Q 015728          260 LCSTETNRKTLVQ  272 (401)
Q Consensus       260 Ls~~~~n~~~iv~  272 (401)
                      |+.++..|..+..
T Consensus       222 Lsdn~rar~aL~~  234 (268)
T 2fv2_A          222 LSDNPRAREALRQ  234 (268)
T ss_dssp             HTTSHHHHHHHHH
T ss_pred             HhcCHHHHHHHHH
Confidence            8888877776654

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.014  Score=54.60  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=49.9

Q ss_pred             cccccccccccCCceEc-Ccccc--ccHHhHHHHHHc-CCCCCCCCcccCCCCCCCCcHHHHHHHHH
Q 015728           12 LFRCPISLDLFTDPVTL-CTGQT--YDRSSIEKWLAA-GNLTCPVTMQTLHDPSIVPNHTLRHLINQ   74 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~-~Cgh~--fc~~Ci~~~~~~-~~~~CP~c~~~~~~~~~~~n~~l~~~i~~   74 (401)
                      .+.||+....|..|+.- .|.|.  |...-+.....+ +...||.|.+.+...++..+..+..++..
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            58999999999999984 79997  555544444332 57889999999988889999888777654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.07  E-value=0.18  Score=46.45  Aligned_cols=149  Identities=13%  Similarity=0.146  Sum_probs=92.6

Q ss_pred             HHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHH
Q 015728          238 EIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDAL  314 (401)
Q Consensus       238 ~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~  314 (401)
                      .+...+.  ..+..+--+++++.|+..++..+..+.+.  ...++..+.+. .+.+..++..++.++.|++.........
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~  228 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI  228 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc
Confidence            4444442  23346888999999999999998888752  34555555422 1346678888888888998632110000


Q ss_pred             HhCCCcHHHHHHHHHh-cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015728          315 INNPNGVYALVKMVFR-VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKL  389 (401)
Q Consensus       315 ~~~~g~i~~Lv~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~  389 (401)
                      -.....+..+.. +++ ..+.++...++.+|.+|...+++.++.+..-|+-..+-.+......+++.+.+..+|.+
T Consensus       229 ~~~~~ll~~l~~-il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          229 EGKAQCLSLIST-ILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            000012233333 333 35677888889999999987777765555566666555555553467888888887754

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=94.75  E-value=0.67  Score=45.94  Aligned_cols=242  Identities=9%  Similarity=0.072  Sum_probs=144.1

Q ss_pred             hcChHHHHHHHHHHHHHHhcCch--hhhHHHhcCChHHHHHHhc-cCCcc-cchhhhHHHHHHHHHHHHHhhcCCchhhh
Q 015728          106 EATLETKLQIVQKIHVVLRESPP--ASNCLIQLGFLPLLLKQLF-GKAES-KFSQVYVQFVEESLSCVQKLLLVGETESL  181 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~-s~~~~-~~~~~~~~~~~~a~~~~L~~l~~~~~~~~  181 (401)
                      +.+++.|-.|+..||.+.+....  .|..-......-.|+.+|. +...+ ..|+.-.-|+|.++. +|..+ .+-+.. 
T Consensus       185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ-tLGaL-~hLp~e-  261 (800)
T 3oc3_A          185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY-LLSRI-YPLIGP-  261 (800)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH-HHHHH-TTTSCS-
T ss_pred             CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHH-HHHHH-HhCChh-
Confidence            56899999999999999988753  1220001133334444442 22111 122223457787777 77765 332221 


Q ss_pred             hhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHHHHHHHHh
Q 015728          182 NLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAGVRAFSAL  260 (401)
Q Consensus       182 ~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~L  260 (401)
                           -..+..++..+..+..+++..+...|.++ .      +.-.   .-.++++.++.-|+ .+.+++..||.+|.-+
T Consensus       262 -----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~------DLL~---~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI  326 (800)
T 3oc3_A          262 -----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K------EFVE---DKDGLCRKLVSLLSSPDEDIKLLSAELLCHF  326 (800)
T ss_dssp             -----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G------GGCC---CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTS
T ss_pred             -----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H------HHHH---HHHHHHHHHHhhcCCcccHHHHHHHHHhhhh
Confidence                 23455555555777889999988888888 2      1111   13578888888884 5667999999999999


Q ss_pred             cCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHH
Q 015728          261 CSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENA  340 (401)
Q Consensus       261 s~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a  340 (401)
                      + .++...     .++..+...|.+. ++-.......+..|+.|+..+..   ...++..||.|.- .++++-+.++..+
T Consensus       327 A-~p~~l~-----~LL~iLWd~L~~L-DDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~P-FLRHtITSVR~AV  395 (800)
T 3oc3_A          327 P-ITDSLD-----LVLEKCWKNIESE-ELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFP-CFTSPVPEVRTSI  395 (800)
T ss_dssp             C-CSSTHH-----HHHHHHHHHHHTC-CSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGG-GGTCSSHHHHHHH
T ss_pred             c-chhhHH-----HHHHHHHHHhhhh-cccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHh-hhcCCcHHHHHHH
Confidence            8 221111     2344455555531 11123445566777777765531   2235577888888 6788878899999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCcHHHHHH-HhhcCCCHHHHHHHHHHHH
Q 015728          341 INSLMMICCDSLQAREEAICAGVLTQLLL-LLQSQCSNRTKTKARMLLK  388 (401)
Q Consensus       341 ~~~L~~l~~~~~~~~~~~~~~g~v~~L~~-ll~~~~~~~~~~~A~~~L~  388 (401)
                      +.+|..+.  +.         .+++.+.+ +|-+. .+.+++.+..+.+
T Consensus       396 L~TL~tfL--~~---------~~LRLIFQNILLE~-neeIl~lS~~VWk  432 (800)
T 3oc3_A          396 LNMVKNLS--EE---------SIDFLVAEVVLIEE-KDEIREMAIKLLK  432 (800)
T ss_dssp             HHHTTTCC--CH---------HHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHH--hh---------hHHHHHHHHHHhCC-cHHHHHHHHHHHH
Confidence            99998776  12         12333333 23233 6777777776664

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.72  E-value=0.62  Score=49.90  Aligned_cols=258  Identities=9%  Similarity=0.060  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhcc----CCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          110 ETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFG----KAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       110 ~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s----~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      ..+..|...|..++..-+   +.+.. -.++.+-..+..    ++.      +-..++.|+. ++..++..-.....-+.
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~------~w~~reaal~-algaia~~~~~~~~~~~  444 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSK------NWKFKDLYIY-LFTALAINGNITNAGVS  444 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----------CHHHHHHHHH-HHHHHHBSSCCBTTBCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcch------hHHHHHHHHH-HHHHHHHHhccccCCcc
Confidence            356677777777776643   22211 123333344431    111      1235666677 77777532111110110


Q ss_pred             ---c-CCchHH----HHHHhhcC---CHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHHH
Q 015728          186 ---E-ESKMES----FIVLFEHG---SCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDAG  253 (401)
Q Consensus       186 ---~-~g~i~~----Lv~~L~~~---~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~a  253 (401)
                         . ....+.    ++..|.++   ++-+|..|+++|..+ +..-    ....   ...+++.++..|. ++..++.+|
T Consensus       445 ~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~-~~~~----~~~~---l~~~l~~l~~~L~d~~~~V~~~A  516 (960)
T 1wa5_C          445 STNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF-RNQL----TKAQ---LIELMPILATFLQTDEYVVYTYA  516 (960)
T ss_dssp             CBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT-GGGS----CHHH---HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             cccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH-HhhC----CHHH---HHHHHHHHHHHhCCCChhHHHHH
Confidence               0 022222    23334555   788999999999998 5421    1121   1356788888774 456799999


Q ss_pred             HHHHHHhcCCCc---------hhHHHHh--cCcHHHHHHHHHhhccc----cchHHHHHHHHHHHHhCCHh-hHHHHHhC
Q 015728          254 VRAFSALCSTET---------NRKTLVQ--EGAINGLIAYISNALTR----ERSLAAIAMARIEQLLAIEN-SKDALINN  317 (401)
Q Consensus       254 ~~aL~~Ls~~~~---------n~~~iv~--~G~v~~Lv~lL~~~~~~----~~~~~~~a~~~L~~La~~~~-~~~~~~~~  317 (401)
                      +.||.+++...+         .+..+..  ...++.|+.++..  .+    .....+.++.+|..++..-. .-....  
T Consensus       517 ~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~--~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--  592 (960)
T 1wa5_C          517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK--HGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--  592 (960)
T ss_dssp             HHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT--TCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--
T ss_pred             HHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh--ccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--
Confidence            999999986422         2333321  2345555556653  10    11123566666666553211 111111  


Q ss_pred             CCcHHHHHHHHHh----cCChhHHHHHHHHHHHHhcC-CHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          318 PNGVYALVKMVFR----VSDHEGSENAINSLMMICCD-SLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       318 ~g~i~~Lv~~l~~----~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ...++.|+..+..    .+++........+|..+... +++.. .-.....++.+..+|+.. .....+.+..++..+.+
T Consensus       593 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          593 PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHHH
Confidence            0234455553322    23444555677777777665 22222 334556678888888765 44566666666666655

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=94.61  E-value=0.028  Score=52.54  Aligned_cols=63  Identities=16%  Similarity=0.276  Sum_probs=50.6

Q ss_pred             cccccccccccCCceE-cCcccc--ccHHhHHHHHHc-CCCCCCCCcccCCCCCCCCcHHHHHHHHH
Q 015728           12 LFRCPISLDLFTDPVT-LCTGQT--YDRSSIEKWLAA-GNLTCPVTMQTLHDPSIVPNHTLRHLINQ   74 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~-~~Cgh~--fc~~Ci~~~~~~-~~~~CP~c~~~~~~~~~~~n~~l~~~i~~   74 (401)
                      .+.||+....|+.|+. ..|.|.  |...-+.....+ +...||.|.+.+...++..+..+..++..
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            5799999999999998 479997  666555544433 56889999999988889999888887654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.04  E-value=0.72  Score=41.49  Aligned_cols=178  Identities=11%  Similarity=0.099  Sum_probs=105.8

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchh--hhHHH-hc-CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCC--ch-
Q 015728          106 EATLETKLQIVQKIHVVLRESPPA--SNCLI-QL-GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVG--ET-  178 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~--r~~i~-~~-G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~--~~-  178 (401)
                      +..+..|.+|+..|..+....+..  ..... .- ..++.+-..+.+..        ..++..++. ++..+...  .. 
T Consensus        20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN--------~~v~~~al~-~l~~~~~~~~~~~   90 (278)
T 4ffb_C           20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN--------VVAQEQAIV-ALNSLIDAFASSS   90 (278)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS--------HHHHHHHHH-HHHHHHTTCC---
T ss_pred             cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch--------HHHHHHHHH-HHHHHHHHhhhhh
Confidence            467999999999999988765432  11111 12 24555666665444        458888888 55544421  11 


Q ss_pred             --hhhhhcccCCchHHHHHH-hhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHH
Q 015728          179 --ESLNLLNEESKMESFIVL-FEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGV  254 (401)
Q Consensus       179 --~~~~~v~~~g~i~~Lv~~-L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~  254 (401)
                        .......-...++.|+.. |.++...++..+..++..++....          ...-+++.++..+ +.++.++..++
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~----------~~~~~~e~l~~~l~~Knpkv~~~~l  160 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT----------SITQSVELVIPFFEKKLPKLIAAAA  160 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS----------SSHHHHHHHGGGGGCSCHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHhccCHHHHHHHH
Confidence              111011112457777765 677788888888888877722211          1113445666666 45677888888


Q ss_pred             HHHHHhcCC--Cc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC
Q 015728          255 RAFSALCST--ET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       255 ~aL~~Ls~~--~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~  306 (401)
                      ..|..+-..  ..  +....+. .+++.+..+|.   +.+..++..|..++..+-.
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~---d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG---HGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT---CSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh---CCcHHHHHHHHHHHHHHHH
Confidence            887776421  11  2222222 25566777888   7899999999999988764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=93.79  E-value=3.4  Score=38.74  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=58.2

Q ss_pred             HHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728          237 REIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI  315 (401)
Q Consensus       237 ~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~  315 (401)
                      ..|.+=+ ++++-.+-.|+++|.++...+     +++ ...+++-+.|.   +.++.++..|+-+...|.....   .++
T Consensus       107 Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~~-~l~~~lk~~L~---d~~pyVRk~A~l~~~kL~~~~p---e~v  174 (355)
T 3tjz_B          107 SSLTKDMTGKEDSYRGPAVRALCQITDST-----MLQ-AIERYMKQAIV---DKVPSVSSSALVSSLHLLKCSF---DVV  174 (355)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----THH-HHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTTCH---HHH
T ss_pred             HHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HHH-HHHHHHHHHcC---CCCHHHHHHHHHHHHHHhccCH---HHH
Confidence            3344433 333446666677776665422     111 24445555555   5667777777777776664321   133


Q ss_pred             hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC
Q 015728          316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS  351 (401)
Q Consensus       316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~  351 (401)
                      .  +.+..+-+ ++.+.++.++-+|+.+|..++.++
T Consensus       175 ~--~~~~~l~~-ll~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          175 K--RWVNEAQE-AASSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             H--TTHHHHHH-HTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H--HHHHHHHH-HhcCCCccHHHHHHHHHHHHHhhc
Confidence            3  56777766 466667777777777777777654

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.53  E-value=0.47  Score=42.08  Aligned_cols=103  Identities=12%  Similarity=0.087  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCC-----hhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHH
Q 015728          294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSD-----HEGSENAINSLMMICCDS-LQAREEAICAGVLTQL  367 (401)
Q Consensus       294 ~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~-----~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L  367 (401)
                      .-+|++.|-.+|.+++.|..++ ++...--|.- .++..+     +-.+-.++.++..|.+.+ +++..-+.+.+.||..
T Consensus        73 VcnaLaLlQcvAshpetr~~Fl-~a~iplyLyP-fL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC  150 (268)
T 2fv2_A           73 VCNALALLQCVASHPETRSAFL-AAHIPLFLYP-FLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC  150 (268)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHH-HTTGGGGTHH-HHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHcCcchhhHHH-HccchHHhhh-hhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence            4667888888999999999997 5664333333 333322     124555888888888764 4677778899999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhcc
Q 015728          368 LLLLQSQCSNRTKTKARMLLKLLRSKWAEELKH  400 (401)
Q Consensus       368 ~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~~  400 (401)
                      +..|+.| ++.+|--|.-++..+-- .-+.|+|
T Consensus       151 Lrime~G-selSKtvAtfIlqKIL~-dd~GL~Y  181 (268)
T 2fv2_A          151 LRIMESG-SELSKTVATFILQKILL-DDTGLAY  181 (268)
T ss_dssp             HHHHHHS-CHHHHHHHHHHHHHHHH-SHHHHHH
T ss_pred             HHHHhhc-cHHHHHHHHHHHHHHhc-cchhHHH
Confidence            9999999 99999999999988876 5565554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.44  E-value=2.3  Score=39.00  Aligned_cols=176  Identities=12%  Similarity=0.051  Sum_probs=95.9

Q ss_pred             ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHH----HHHhh-cCCHHHHHHHHHHH
Q 015728          138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESF----IVLFE-HGSCSIKKRLCHLV  212 (401)
Q Consensus       138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~L----v~~L~-~~~~~~~~~aa~~L  212 (401)
                      .+..+.+++..+..         .+.-++- +++.+..+.... ..+.+...-..+    ...+. ++.+..+.-+.+++
T Consensus       104 ~l~~l~kil~WP~~---------~~fPvLD-LlRl~~l~p~~~-~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l  172 (304)
T 3ebb_A          104 QLQILWKAINCPED---------IVFPALD-ILRLSIKHPSVN-ENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTF  172 (304)
T ss_dssp             HHHHHHHHHTSCTT---------TCHHHHH-HHHHHTTSHHHH-HHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHH---------hHHHHHH-HHHHHHcCccHH-HHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence            45677777743332         4556666 777766554333 233222211222    23332 23556678888888


Q ss_pred             HHHHhcccchhhhhhhhcc-chHHHHHHHHHcc-CCchhHHHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccc
Q 015728          213 EVIISSSHETKELCCKLGK-DDRLLREIISLVH-HNSEASDAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTR  289 (401)
Q Consensus       213 ~~l~s~~~~~~~~~~~i~~-~~g~i~~Lv~lL~-~~~~~~~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~  289 (401)
                      .|+ -...   ..+..+.. ...+++.+...+. .+..++.+++.+++|++..-. .+..=...-++..+..++..  ..
T Consensus       173 ~Nl-F~~~---~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~--~~  246 (304)
T 3ebb_A          173 CNC-FVGQ---AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEV--VQ  246 (304)
T ss_dssp             HHG-GGSH---HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTT--CC
T ss_pred             HHc-cCCc---hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc--cC
Confidence            888 4443   55555542 2234455554543 344589999999999995211 11100011145555566654  45


Q ss_pred             cchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728          290 ERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV  331 (401)
Q Consensus       290 ~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~  331 (401)
                      +.+..-.++.+|.+|...+....++...-| +...++.+.+.
T Consensus       247 d~EalyR~LvALGtL~~~~~~~~~lak~l~-~~~~v~~~~~~  287 (304)
T 3ebb_A          247 DLEATFRLLVALGTLISDDSNAVQLAKSLG-VDSQIKKYSSV  287 (304)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHGGGGGGC
T ss_pred             CHHHHHHHHHHHHHHHhCChhHHHHHHHcC-HHHHHHHHHhC
Confidence            778889999999999975444444433333 33334334443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.41  E-value=4.5  Score=39.25  Aligned_cols=127  Identities=13%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             HHHHHHccCCchhHHHHHHHHHHhc-CCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH
Q 015728          237 REIISLVHHNSEASDAGVRAFSALC-STETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI  315 (401)
Q Consensus       237 ~~Lv~lL~~~~~~~~~a~~aL~~Ls-~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~  315 (401)
                      ..++...+++...++-|+..|.... ..++-...     ++..++.|..   +.+..++..|+..|-.+|.+ +.-..+ 
T Consensus        32 ~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcE---Ded~~IR~qaik~Lp~~ck~-~~i~ki-  101 (507)
T 3u0r_A           32 QVILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCE---DEDVSIRRQAIKELPQFATG-ENLPRV-  101 (507)
T ss_dssp             HHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHT---CSSHHHHHHHHHHGGGGCCT-TCHHHH-
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh---cccHHHHHHHHHhhHHHhhh-hhhhhH-
Confidence            4444444667778888888888766 45555544     6778899998   77888999999999999987 543333 


Q ss_pred             hCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728          316 NNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLK  388 (401)
Q Consensus       316 ~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~  388 (401)
                           +..|++ |+...++.-....-.+|..|-+.++..        .+..|+..+..+ ++.+|+++...|+
T Consensus       102 -----aDvL~Q-lLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~  159 (507)
T 3u0r_A          102 -----ADILTQ-LLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLS  159 (507)
T ss_dssp             -----HHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             -----HHHHHH-HHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHH
Confidence                 457888 566666566666667777776655432        344455555555 7788888777763

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=91.63  E-value=2.7  Score=37.69  Aligned_cols=138  Identities=6%  Similarity=0.004  Sum_probs=90.9

Q ss_pred             cCCchhHHHHHHHHHHhcC---CCchhHHHHhc-CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCC
Q 015728          244 HHNSEASDAGVRAFSALCS---TETNRKTLVQE-GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPN  319 (401)
Q Consensus       244 ~~~~~~~~~a~~aL~~Ls~---~~~n~~~iv~~-G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g  319 (401)
                      +.+..+...++.+|..+..   ..+.+-.--++ -.+|.|++-+.   ++.+.+++.+..+|..++..       ..-..
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlG---d~k~~vR~~~r~il~~l~~v-------~~~~~  167 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG---EAKDNMRTSVRDIVNVLSDV-------VGPLK  167 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHHH-------HCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHH-------CCHHH
Confidence            4555666666666666531   11111111122 26888888887   67778888888888777631       11112


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcH---HHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          320 GVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVL---TQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       320 ~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v---~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      ..+.+++ -+++.+.+.++.++..+..+-...+-.     ...++   +.+..++.+. +..+|+.|...+-.+-++.||
T Consensus       168 v~~~l~~-g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~Gd  240 (266)
T 2of3_A          168 MTPMLLD-ALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFEGD  240 (266)
T ss_dssp             HHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHH-HHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhH
Confidence            3455666 357778889999988888775332211     34578   8888898776 999999999999988887777


Q ss_pred             hh
Q 015728          397 EL  398 (401)
Q Consensus       397 ~~  398 (401)
                      .+
T Consensus       241 ~v  242 (266)
T 2of3_A          241 QM  242 (266)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=90.70  E-value=2.4  Score=38.01  Aligned_cols=169  Identities=9%  Similarity=0.158  Sum_probs=102.7

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcC-ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcC--Cchhhhhh
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLG-FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLV--GETESLNL  183 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~--~~~~~~~~  183 (401)
                      .+...+.+|+..|......++  +..+...+ .++.+.--+.+..        ..+...++. +|..+..  .+.+.+ .
T Consensus        58 ~d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d~N--------~~v~~~~L~-~L~~l~~~l~~~~y~-~  125 (266)
T 2of3_A           58 KDFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFETN--------PAALIKVLE-LCKVIVELIRDTETP-M  125 (266)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTSCC--------HHHHHHHHH-HHHHHHHHHHHTTCC-C
T ss_pred             CCHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHH-HHHHHHHHHHhcccc-c
Confidence            467788889999998876644  22222222 2232222222332        446666666 5554320  011111 1


Q ss_pred             c-cc-CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHh
Q 015728          184 L-NE-ESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSAL  260 (401)
Q Consensus       184 v-~~-~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~L  260 (401)
                      . .+ .-.+|.|+..+..+...+|+.+-.+|..+ ...          .....+.+.++.-+ +.+...+..++..|..+
T Consensus       126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l-~~v----------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVL-SDV----------VGPLKMTPMLLDALKSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH-HHH----------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-HHH----------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            1 11 23589999999777888998888888777 321          11224667777767 45666788887777776


Q ss_pred             cCCCchhHHHHhcCcH---HHHHHHHHhhccccchHHHHHHHHHHHHh
Q 015728          261 CSTETNRKTLVQEGAI---NGLIAYISNALTRERSLAAIAMARIEQLL  305 (401)
Q Consensus       261 s~~~~n~~~iv~~G~v---~~Lv~lL~~~~~~~~~~~~~a~~~L~~La  305 (401)
                      -....-.    ...++   |.+.+++.   +.+..++..|+.++..+-
T Consensus       195 i~~~G~~----~~~~l~~~~~ia~ll~---D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          195 ITNAGIS----PLKSLSVEKTVAPFVG---DKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHHHCSG----GGGGGCHHHHHGGGGG---CSSHHHHHHHHHHHHHHH
T ss_pred             HHhcCCC----ccccccchHHHHHHHc---CCCHHHHHHHHHHHHHHH
Confidence            5322211    23478   99999999   788899999999888654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=89.88  E-value=22  Score=37.65  Aligned_cols=219  Identities=9%  Similarity=0.008  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHh---h--cCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHH
Q 015728          161 FVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLF---E--HGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRL  235 (401)
Q Consensus       161 ~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L---~--~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~  235 (401)
                      ..+.++. ++..++..-....     ...++.++.++   .  .+++.++..+.++|..+ +..-.  .+...+   ..+
T Consensus       480 ~~eaal~-~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~-~~~l~--~~~~~l---~~v  547 (971)
T 2x1g_F          480 KLEACIY-SFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSY-CNWLM--ENPAYI---PPA  547 (971)
T ss_dssp             HHHHHHH-HHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHT-HHHHC------CH---HHH
T ss_pred             HHHHHHH-HHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHH-HHHHh--cCHHHH---HHH
Confidence            5666777 6776663321111     12344444443   3  23778999999999988 53210  112222   356


Q ss_pred             HHHHHHHccCCchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC--HhhH
Q 015728          236 LREIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLAI--ENSK  311 (401)
Q Consensus       236 i~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~--~~~~  311 (401)
                      ++.|+..|+  +.++..|+.++.+++...  +..+..  .+.+..|.+++.+. ..+...+..+..++..++..  ++..
T Consensus       548 l~~l~~~l~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~-~~~~~~~~~~~~ai~~i~~~~~~~~~  622 (971)
T 2x1g_F          548 INLLVRGLN--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTG-RMKNSDSVRLMFSIGKLMSLLRPEEI  622 (971)
T ss_dssp             HHHHHHHHH--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHST-TSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred             HHHHHHHhC--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHHhCCHHHH
Confidence            777777663  679999999999999432  333332  23444555555521 13457788888888887753  2343


Q ss_pred             HHHHhCCCcHHHHHHHHH---hcC--ChhHHHHHHHHHHHHhcCCHHHH---------------HHHHHcCcHHHHHHHh
Q 015728          312 DALINNPNGVYALVKMVF---RVS--DHEGSENAINSLMMICCDSLQAR---------------EEAICAGVLTQLLLLL  371 (401)
Q Consensus       312 ~~~~~~~g~i~~Lv~~l~---~~~--~~~~~~~a~~~L~~l~~~~~~~~---------------~~~~~~g~v~~L~~ll  371 (401)
                      .....  ..+++++..+.   ...  ++......+..|..|+..-....               -.-.....++.+..++
T Consensus       623 ~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l  700 (971)
T 2x1g_F          623 PKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIA  700 (971)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHH
Confidence            33321  34455555332   111  22233444555544432100000               0112345677777777


Q ss_pred             hcC-CCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          372 QSQ-CSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       372 ~~~-~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      +.. .++...+.+.++++.+....++++
T Consensus       701 ~~~~~~~~v~e~~~~~~~~~~~~~~~~~  728 (971)
T 2x1g_F          701 EMWVEEIDVLEAACSAMKHAITNLRSSF  728 (971)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HhccccHHHHHHHHHHHHHHHHhhhhhc
Confidence            543 367899999999998877666554

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=89.78  E-value=0.41  Score=33.85  Aligned_cols=43  Identities=16%  Similarity=0.315  Sum_probs=33.2

Q ss_pred             CCcccccccccccCCceEcC----ccccccHHhHHHHHHc----CCCCCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLC----TGQTYDRSSIEKWLAA----GNLTCPV   52 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~----Cgh~fc~~Ci~~~~~~----~~~~CP~   52 (401)
                      ...+.|.+|.+-+.|-....    -+|.||-.|-..+.+.    ....||-
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS   63 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS   63 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence            45789999999999876554    4699999999888775    2455665

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=89.72  E-value=0.43  Score=34.59  Aligned_cols=49  Identities=20%  Similarity=0.146  Sum_probs=37.3

Q ss_pred             CcccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           11 HLFRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        11 ~~~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ..-.|.||.+-.-     ++...  .|+...|+.|++--.+.+...||.|+..+..
T Consensus        15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr   70 (93)
T 1weo_A           15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence            3468999998632     23333  5888899999987777789999999987753

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=89.33  E-value=14  Score=34.82  Aligned_cols=185  Identities=12%  Similarity=0.071  Sum_probs=107.6

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhh-hHHHhcCChHHHHHHhccCCccc-c--hhhhHHHHHHHHHHHH
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPAS-NCLIQLGFLPLLLKQLFGKAESK-F--SQVYVQFVEESLSCVQ  170 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~s~~~~~-~--~~~~~~~~~~a~~~~L  170 (401)
                      ...+++.|.+.. +.+.-..-+..|+...+..+..+ +.+. .+|+..|+.+|..-.... .  ...+...+..++. -|
T Consensus        68 P~~yi~~L~~~~-~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~-CL  144 (383)
T 3eg5_B           68 AMMYIQELRSGL-RDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIR-CL  144 (383)
T ss_dssp             HHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHH-HH
T ss_pred             HHHHHHHHHhcc-cchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHH-HH
Confidence            344455555442 22333456888888888877643 4444 678999999985311000 0  0012457778888 44


Q ss_pred             HhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhh-hhhhh---------ccchHHHHHHH
Q 015728          171 KLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE-LCCKL---------GKDDRLLREII  240 (401)
Q Consensus       171 ~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~-~~~~i---------~~~~g~i~~Lv  240 (401)
                      ..+-........++.....|..+...|.+.++.++..+..+|..+ +..+..+. ....+         ++. .-..+++
T Consensus       145 kalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~l-c~~~~~~gG~~~VL~Al~~~~~~~e~-~RF~~lv  222 (383)
T 3eg5_B          145 KAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSAL-CILPQPEDMNERVLEAMTERAEMDEV-ERFQPLL  222 (383)
T ss_dssp             HHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHH-HTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHH
T ss_pred             HHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHH-HhCcCcCCcHHHHHHHHHHHHHhCCC-CcHHHHH
Confidence            545445556666777788999999999999999999999998887 55431001 11111         111 2246678


Q ss_pred             HHccC--CchhHHHHHHHHHHhcCCCc-------hhHHHHhcCcHHHHHHHHHh
Q 015728          241 SLVHH--NSEASDAGVRAFSALCSTET-------NRKTLVQEGAINGLIAYISN  285 (401)
Q Consensus       241 ~lL~~--~~~~~~~a~~aL~~Ls~~~~-------n~~~iv~~G~v~~Lv~lL~~  285 (401)
                      ..|+.  +.+.+.++...+-.+...++       -|..+...|..+.+-. |+.
T Consensus       223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~  275 (383)
T 3eg5_B          223 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE  275 (383)
T ss_dssp             HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence            87843  33455544444444554333       2455556766665554 663

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=87.77  E-value=24  Score=37.32  Aligned_cols=220  Identities=9%  Similarity=0.057  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHh---hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH
Q 015728          160 QFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLF---EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL  236 (401)
Q Consensus       160 ~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L---~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i  236 (401)
                      ..++.++. ++..++..-..     .+...++.++..+   .++++.++..+++++..+ +..-.  .....+   ..++
T Consensus       464 ~~~eaal~-al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~-~~~l~--~~~~~l---~~vl  531 (963)
T 2x19_B          464 QHTEALLY-GFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGAL-SEWLA--DHPVMI---NSVL  531 (963)
T ss_dssp             HHHHHHHH-HHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHT-HHHHH--HCHHHH---TTTH
T ss_pred             HHHHHHHH-HHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH-HHHHH--hCHHHH---HHHH
Confidence            45666777 77766632211     0123345555544   335678899999999888 53210  222222   2467


Q ss_pred             HHHHHHccCCchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC--HhhHH
Q 015728          237 REIISLVHHNSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISNALTRERSLAAIAMARIEQLLAI--ENSKD  312 (401)
Q Consensus       237 ~~Lv~lL~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~--~~~~~  312 (401)
                      +.|+..|.. +.++..|+.+|.+++...  +..+..  ...+..|..++... .-+...+..+..++..++..  .+...
T Consensus       532 ~~l~~~l~~-~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          532 PLVLHALGN-PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHTTC-GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHhCC-chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            778877744 679999999999999422  222221  12333444445420 12456788888888888753  24444


Q ss_pred             HHHhCCCcHHHHHHHHHh---c-CChhHHHH---HHHHHHHHhcCCH-----H----------------HHHHHHHcCcH
Q 015728          313 ALINNPNGVYALVKMVFR---V-SDHEGSEN---AINSLMMICCDSL-----Q----------------AREEAICAGVL  364 (401)
Q Consensus       313 ~~~~~~g~i~~Lv~~l~~---~-~~~~~~~~---a~~~L~~l~~~~~-----~----------------~~~~~~~~g~v  364 (401)
                      ..+.  ..++.++..+..   . .++..+..   .+.+|..+...-.     .                ..........+
T Consensus       608 ~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (963)
T 2x19_B          608 KNLH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVF  685 (963)
T ss_dssp             HHHH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHH
Confidence            3331  345555553221   1 23334443   3333433322100     0                00111233455


Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          365 TQLLLLLQS-QCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       365 ~~L~~ll~~-~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      +.+..+++. ..+....+.+..+++.+....+++
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~  719 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDD  719 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSST
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccc
Confidence            666666643 225678888888888876654443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=86.64  E-value=36  Score=36.12  Aligned_cols=227  Identities=10%  Similarity=0.094  Sum_probs=121.4

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHH---h-cCChHHHHH----HhccCCcccchhhhHHHHHHHHHHHHHhhcCCch
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLI---Q-LGFLPLLLK----QLFGKAESKFSQVYVQFVEESLSCVQKLLLVGET  178 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~---~-~G~i~~Lv~----lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~  178 (401)
                      .+...+..|+..+..++.........+.   . ....+.|++    .|.++.+.     ++.++..|++ ++..++..- 
T Consensus       417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~-----~p~vr~~a~~-~lg~~~~~~-  489 (960)
T 1wa5_C          417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIP-----HIILRVDAIK-YIYTFRNQL-  489 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCS-----CHHHHHHHHH-HHHHTGGGS-
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCC-----CceehHHHHH-HHHHHHhhC-
Confidence            4567888899999988754321110000   0 022333333    34444211     2679999999 888776321 


Q ss_pred             hhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccc-----hhh-hhhhhcc-chHHHHHHHHHccCC----c
Q 015728          179 ESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHE-----TKE-LCCKLGK-DDRLLREIISLVHHN----S  247 (401)
Q Consensus       179 ~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~-----~~~-~~~~i~~-~~g~i~~Lv~lL~~~----~  247 (401)
                       ..+.+  ...++.++..|.+++..++..|+.+|.++ .....     .++ .+..+.. ...+++.|+.++...    .
T Consensus       490 -~~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~-~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~  565 (960)
T 1wa5_C          490 -TKAQL--IELMPILATFLQTDEYVVYTYAAITIEKI-LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE  565 (960)
T ss_dssp             -CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHH-TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred             -CHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHH-HhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence             11222  23577888888888889999999999999 54210     001 1233321 235677777777432    1


Q ss_pred             --hhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhh--ccccchHHHHHHHHHHHHhCC--HhhHHHHHhCCCc
Q 015728          248 --EASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNA--LTRERSLAAIAMARIEQLLAI--ENSKDALINNPNG  320 (401)
Q Consensus       248 --~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~~~~a~~~L~~La~~--~~~~~~~~~~~g~  320 (401)
                        .....+..+|..+.. ..+.-...+. ..++.|+..+...  +.++......++.+|..++..  ++....+.  ...
T Consensus       566 ~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~  642 (960)
T 1wa5_C          566 KLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSM  642 (960)
T ss_dssp             HHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHH
T ss_pred             cccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHH
Confidence              134566666666542 1121111222 2566666666531  123455666778888877754  33333332  245


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 015728          321 VYALVKMVFRVSDHEGSENAINSLMMIC  348 (401)
Q Consensus       321 i~~Lv~~l~~~~~~~~~~~a~~~L~~l~  348 (401)
                      +|.+.. ++........+.+..++..+.
T Consensus       643 ~p~~~~-iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          643 MPTFLT-VFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHH-HHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHhhhHhhHHHHHHHHHHHH
Confidence            566666 444433345555666655443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=86.23  E-value=4  Score=35.70  Aligned_cols=120  Identities=13%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             hcCcHHHHHHHHHhhc-c-------ccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHH
Q 015728          272 QEGAINGLIAYISNAL-T-------RERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINS  343 (401)
Q Consensus       272 ~~G~v~~Lv~lL~~~~-~-------~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~  343 (401)
                      ..||+..|+.+|.... .       .+...+..++.+|..+.....|...+..++++|..++. .+.+..+..+..++..
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~-~L~s~~~~~r~~~leL  119 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVR-AMDPAVPNMMIDAAKL  119 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHT-TCCTTSHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHH-HhCCCCchHHHHHHHH
Confidence            4577888888886421 0       12355677889999999999999999889999988888 4677778888899999


Q ss_pred             HHHHhcCCH-HH-HHHH----------HHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          344 LMMICCDSL-QA-REEA----------ICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       344 L~~l~~~~~-~~-~~~~----------~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      |..+|..++ +. ...+          .+..-+..+++.+..+....-+-.+..++..+-.
T Consensus       120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~  180 (233)
T 2f31_A          120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT  180 (233)
T ss_dssp             HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHC
Confidence            998886542 11 1111          1223455566666544344445445555544443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=83.76  E-value=8.7  Score=40.77  Aligned_cols=173  Identities=12%  Similarity=0.106  Sum_probs=99.6

Q ss_pred             hcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc----cCCchhHHHHHHHHHHhcCCCchhHHHHhc
Q 015728          198 EHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV----HHNSEASDAGVRAFSALCSTETNRKTLVQE  273 (401)
Q Consensus       198 ~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL----~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~  273 (401)
                      .+.+...++.+..++..+ +..-.  +   ..   ...++.++..+    .+++.++..+.++|..++..-........ 
T Consensus       459 ~~~~w~~~eaal~al~~i-~~~~~--~---~~---~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-  528 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSI-AETID--V---NY---SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-  528 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHH-TTSCC--S---SC---CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-
T ss_pred             CCCchHHHHHHHHHHHHH-HhhcC--c---hh---hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-
Confidence            344667888888889888 54321  1   11   13445555554    33455889999999988853221123333 


Q ss_pred             CcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHH---Hhc--CChhHHHHHHHHHHHHh
Q 015728          274 GAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMV---FRV--SDHEGSENAINSLMMIC  348 (401)
Q Consensus       274 G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l---~~~--~~~~~~~~a~~~L~~l~  348 (401)
                      .+++.|+..|.   +  +.++..|+.+|..++..  .+..+.   ..++.++..+   +..  -+...+.....++..++
T Consensus       529 ~vl~~l~~~l~---~--~~V~~~A~~al~~l~~~--~~~~l~---p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~  598 (963)
T 2x19_B          529 SVLPLVLHALG---N--PELSVSSVSTLKKICRE--CKYDLP---PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL  598 (963)
T ss_dssp             TTHHHHHHHTT---C--GGGHHHHHHHHHHHHHH--TGGGCT---TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---C--chHHHHHHHHHHHHHHH--HHHHHH---hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence            57777777776   3  67899999999999952  222222   2344443322   332  24567888888888887


Q ss_pred             cCCH-HHHHHHHHcCcHHHHHHHhh----cCCCHHHHHHHHHHHHHHH
Q 015728          349 CDSL-QAREEAICAGVLTQLLLLLQ----SQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       349 ~~~~-~~~~~~~~~g~v~~L~~ll~----~~~~~~~~~~A~~~L~~l~  391 (401)
                      ...+ +..... -...++++...++    .+.++..+.....++..++
T Consensus       599 ~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~  645 (963)
T 2x19_B          599 SALQVEEILKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS  645 (963)
T ss_dssp             TTSCHHHHHHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred             hcCCHHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            6432 333222 2334444544443    2335666666555555554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=83.46  E-value=11  Score=32.96  Aligned_cols=141  Identities=11%  Similarity=0.081  Sum_probs=91.4

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCC--chhHHHHHHHHHHhcC--CCch
Q 015728          191 ESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHN--SEASDAGVRAFSALCS--TETN  266 (401)
Q Consensus       191 ~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~a~~aL~~Ls~--~~~n  266 (401)
                      +..-.+.++...++|..|+.+|..+ ..            . ..+++.+...+..+  =.++..++.++..++.  +++ 
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~~------------~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK------------D-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-TT------------S-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-cC------------c-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence            3334555677778998888877665 31            1 24667777756333  3589999999998874  333 


Q ss_pred             hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 015728          267 RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMM  346 (401)
Q Consensus       267 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~  346 (401)
                      +       .++.+...+.   +++..++..|...+.--+..+    ....++.-+-+++..+..+.+.-++......|..
T Consensus       139 ~-------~l~~~~~W~~---d~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD  204 (240)
T 3l9t_A          139 K-------ALPIIDEWLK---SSNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRD  204 (240)
T ss_dssp             T-------THHHHHHHHH---CSSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHhc---CCCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            1       6677888888   788888888877654322211    1112333334444435666677789999999999


Q ss_pred             HhcCCHHHHHHHHH
Q 015728          347 ICCDSLQAREEAIC  360 (401)
Q Consensus       347 l~~~~~~~~~~~~~  360 (401)
                      +++.+++.....++
T Consensus       205 ~SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          205 ISKKFPDLVKIELK  218 (240)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HhhhCHHHHHHHHH
Confidence            99999876545444

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=83.00  E-value=23  Score=30.75  Aligned_cols=167  Identities=13%  Similarity=0.124  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhcCchh-hhHHHhcCChHHHHHHhccCCccc-ch--hhhHHHHHHHHHHHHHhhcCCchhhhhhcccCC
Q 015728          113 LQIVQKIHVVLRESPPA-SNCLIQLGFLPLLLKQLFGKAESK-FS--QVYVQFVEESLSCVQKLLLVGETESLNLLNEES  188 (401)
Q Consensus       113 ~~a~~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~-~~--~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g  188 (401)
                      ..-+..|+...+.++.. -+.+ ..||+..|+..|..-.... ..  ..+.+.+.+++.| |..+.........++..++
T Consensus        19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~C-Lkalmn~~~G~~~vl~~~~   96 (233)
T 2f31_A           19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRC-LKAFMNNKFGIKTMLETEE   96 (233)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHH-HHHHTSSHHHHHHHHTSSS
T ss_pred             HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH-HHHHhCChHHHHHHHcCcH
Confidence            34566777666766653 2333 4678889999885321100 00  0135677788884 4445445555666777778


Q ss_pred             chHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhh-hhhhccc---------hHHHHHHHHHcc-CC-chhHHHHHHH
Q 015728          189 KMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKEL-CCKLGKD---------DRLLREIISLVH-HN-SEASDAGVRA  256 (401)
Q Consensus       189 ~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~-~~~i~~~---------~g~i~~Lv~lL~-~~-~~~~~~a~~a  256 (401)
                      .+..+...|.+.+..++..+..+|..+ +..+.. +. ...+.++         ..-..+++..|+ .+ .+.+.++...
T Consensus        97 ~i~~l~~~L~s~~~~~r~~~leLL~~l-c~~~~~-~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~l  174 (233)
T 2f31_A           97 GILLLVRAMDPAVPNMMIDAAKLLSAL-CILPQP-EDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQL  174 (233)
T ss_dssp             HHHHHHTTCCTTSHHHHHHHHHHHHHH-HTCSSS-SCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHH-HhCCCC-CChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHH
Confidence            899999999999999999998888887 554310 11 1111110         012345777774 22 3344444444


Q ss_pred             HHHhcCCCc-------hhHHHHhcCcHHHHHHHHH
Q 015728          257 FSALCSTET-------NRKTLVQEGAINGLIAYIS  284 (401)
Q Consensus       257 L~~Ls~~~~-------n~~~iv~~G~v~~Lv~lL~  284 (401)
                      +-.|...++       -|..+...|.-+.+ +-|+
T Consensus       175 IN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~  208 (233)
T 2f31_A          175 INALITPAEELDFRVHIRSELMRLGLHQVL-QELR  208 (233)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHH
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHh
Confidence            444544443       24555566655544 4555

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=82.74  E-value=16  Score=33.99  Aligned_cols=110  Identities=11%  Similarity=0.094  Sum_probs=87.2

Q ss_pred             HHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChh
Q 015728          257 FSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHE  335 (401)
Q Consensus       257 L~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~  335 (401)
                      |.||-.+++ ...-+|++++|..+-.+..   -.+.++.......|...+....-...-  -...+|-++..+-..++.+
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvin---YpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~eDd  340 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQ---YPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPDDE  340 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTT---SSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCCHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEee---cCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCCcc
Confidence            445555555 4778899999999999998   678888899999998887644332221  2356788888776777778


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHh
Q 015728          336 GSENAINSLMMICCDSLQAREEAICAGVLTQLLLLL  371 (401)
Q Consensus       336 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll  371 (401)
                      +.-.....|.|...+...+++.++..|+|..|-..+
T Consensus       341 vvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I  376 (619)
T 3c2g_A          341 VIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII  376 (619)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             eEEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence            899999999999999888999999999999998875

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=81.10  E-value=36  Score=31.75  Aligned_cols=115  Identities=15%  Similarity=0.258  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH
Q 015728          162 VEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS  241 (401)
Q Consensus       162 ~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~  241 (401)
                      .-.+.. +|+.| .++++...=.+..++|..+-.++.-++.+........|... |...   ..+..-  ....+|+++.
T Consensus       260 vtR~FD-LL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQV-SDak---sL~~t~--L~e~LPFi~~  331 (619)
T 3c2g_A          260 IIRTFD-LLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQV-SDAK---ALAKTP--LENILPFLLR  331 (619)
T ss_dssp             HHHHHH-HHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH-TTCG---GGGTSC--CTTHHHHHHH
T ss_pred             HHHHHH-HHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeee-cchH---HHhhcc--ccccchHHHH
Confidence            344445 66655 46666655455788999999999989998888888888887 6443   333332  2367899999


Q ss_pred             Hc--cCCchhHHHHHHHHHHhcCCCch-hHHHHhcCcHHHHHHHHH
Q 015728          242 LV--HHNSEASDAGVRAFSALCSTETN-RKTLVQEGAINGLIAYIS  284 (401)
Q Consensus       242 lL--~~~~~~~~~a~~aL~~Ls~~~~n-~~~iv~~G~v~~Lv~lL~  284 (401)
                      .+  .++.++.-.....|.|...+... +...+..|+|+.|-..+.
T Consensus       332 ~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          332 LIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            99  56777999999999999887775 444578999999988875

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=81.06  E-value=25  Score=37.76  Aligned_cols=141  Identities=6%  Similarity=0.022  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC----Cch--hHHHHHHHHHHhcCCCchhHHHHhc
Q 015728          200 GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH----NSE--ASDAGVRAFSALCSTETNRKTLVQE  273 (401)
Q Consensus       200 ~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~--~~~~a~~aL~~Ls~~~~n~~~iv~~  273 (401)
                      .+...++.+.++++.+ +.....+..+..+   ..+++.|+.++..    +..  ++..++++|...+..-.....    
T Consensus       465 ~~W~~~EA~~~a~gaI-a~~~~~~~e~~~l---~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~----  536 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSI-SGTMSEDTEKRFV---VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN----  536 (1023)
T ss_dssp             CCHHHHHHHHHHHHHT-TTSSCHHHHHHHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH----
T ss_pred             CCHHHHHHHHHHHHHH-HcCCCchhHHHHH---HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH----
Confidence            4678999999999998 6543211123333   2567888888731    122  334555777666542222222    


Q ss_pred             CcHHHHHHHHHhh-ccccchHHHHHHHHHHHHhCCHhhHHHHHh-C----CCcHHHHHHHHH---hcCChhHHHHHHHHH
Q 015728          274 GAINGLIAYISNA-LTRERSLAAIAMARIEQLLAIENSKDALIN-N----PNGVYALVKMVF---RVSDHEGSENAINSL  344 (401)
Q Consensus       274 G~v~~Lv~lL~~~-~~~~~~~~~~a~~~L~~La~~~~~~~~~~~-~----~g~i~~Lv~~l~---~~~~~~~~~~a~~~L  344 (401)
                       .+++++..|-.. +++++.++..|++++..||..  .+..+.. +    .-.++.++..+.   ..-++.....+..++
T Consensus       537 -~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai  613 (1023)
T 4hat_C          537 -FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKAC  613 (1023)
T ss_dssp             -HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence             355555555422 145567999999999999963  2233321 1    123454444332   223445666777777


Q ss_pred             HHHhcCC
Q 015728          345 MMICCDS  351 (401)
Q Consensus       345 ~~l~~~~  351 (401)
                      ..+....
T Consensus       614 ~~vi~~~  620 (1023)
T 4hat_C          614 GIIISEE  620 (1023)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHhC
Confidence            7776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	401
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-18
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	5e-14
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-13
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-10
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-06
d1lnsa3	405	c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep	4e-04
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	5e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	0.001
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.003

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query: 9  IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
           P  FRCPISL+L  DPV + TGQTY+RSSI+KWL AG+ TCP + +TL    + PN+ L
Sbjct: 5  FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 69 RHLINQWLQ 77
          + LI  W +
Sbjct: 65 KSLIALWCE 73

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.9 bits (157), Expect = 5e-14
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 9  IPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTL 68
          IP      IS +L  +P    +G TYDR  IE+ L       PVT   L    ++PN  +
Sbjct: 4  IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 69 RHLINQWLQ 77
          + +I+ ++ 
Sbjct: 64 KEVIDAFIS 72

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 3e-13
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 3  EDRQMTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAA--GNLTCPVTMQTLHDP 60
          ++    +  +  CPI L+L  +PV+      + +  + K L    G   CP+    +   
Sbjct: 12 QNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71

Query: 61 SIVPNHTLRHLINQWLQMGGGQHFDP 86
          S+  +     L+ + L++      D 
Sbjct: 72 SLQESTRFSQLVEELLKIICAFQLDT 97

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 3  EDRQMTIPHLFRCPISLDLFTDPVTLCTGQ-TYDRSSIEKWLAAGNLTCPVTMQTLHDPS 61
          E+        F  PI   L  DPV L + + T DRS+I + L +   T P     L    
Sbjct: 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQ 71

Query: 62 IVPNHTLRHLINQWLQ 77
          I PN  L+  I +WL 
Sbjct: 72 IRPNTELKEKIQRWLA 87

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 8/50 (16%), Positives = 13/50 (26%)

Query: 15 CPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVP 64
          C I  +   D      G     S +  W  +    CP     +     + 
Sbjct: 26 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 13 FRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV-PNHTLRHL 71
            C I   +  DPV       + R  I + L      CP          +  P  +  ++
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI 83

Query: 72 IN 73
          +N
Sbjct: 84 LN 85

>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405

class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: PepX catalytic domain-like
domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 32  QTYDRSSIEKWLAAGNLTCPV-TMQTLHDPSIVPNHT------LRHLINQWLQMGGGQHF 84
           Q +   +         +   V  +  L D ++ P         L     +   +  G H 
Sbjct: 297 QFWHDRNYLIN--TDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEGHAKHAFLHRGAHI 354

Query: 85  DPNYLATIDSLSTLK 99
             N   +ID   T+ 
Sbjct: 355 YMNSWQSIDFSETIN 369

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 4/39 (10%)

Query: 14 RCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPV 52
          RC         P  L    T     +E       + CP+
Sbjct: 8  RCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPI 42

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 271 VQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR 330
           +   AI  L   +++      + AA+    + QL   E S+ A++ +P  V A+V+ +  
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVM---VHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQ 374
            +D E +     +L  +     +       +G +  L+ +L S 
Sbjct: 71  TNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSP 113

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 14 RCPISLDLFTDPVTLCT-GQTYDRSSIEKWLAAGNLTCPVTMQTLHD 59
          RCPI L+  ++          +    I +W+   N TCP+    +  
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWI-RQNPTCPLCKVPVES 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.91
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.91
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.91
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.91
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.82
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.79
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.7
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.58
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.55
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.47
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.36
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.19
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.18
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.09
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.02
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.96
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.62
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.53
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.51
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.48
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.45
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.38
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.38
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.29
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.29
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.26
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.07
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.89
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.6
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.58
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.58
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.54
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.45
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.43
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.39
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.23
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.15
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.11
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.01
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.58
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	89.97
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	89.8
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	89.32
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	89.17
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	83.33
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	80.87

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-24  Score=217.90  Aligned_cols=278  Identities=12%  Similarity=0.135  Sum_probs=237.2

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +.+..+.+.|+.. ++.+.+..|+..|.+++. ++.++..+++.|+||.|+.+|++++        ++++++|++ +|.+
T Consensus        59 ~~v~~l~~~L~~~-~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~--------~~v~~~a~~-aL~~  127 (529)
T d1jdha_          59 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPV--------DSVLFYAIT-TLHN  127 (529)
T ss_dssp             HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHH
T ss_pred             hHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCC--------HHHHHHHHH-HHHH
Confidence            4577777777654 357889999999999985 5668899999999999999998876        459999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-C-CchhH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-H-NSEAS  250 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~  250 (401)
                      ++.+++..+..+.+.|+|+.|+.+|++++.+.+..++.+|.++ +..+  ++++..+... |++++|+.++. . ....+
T Consensus       128 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l-~~~~--~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~  203 (529)
T d1jdha_         128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGN--QESKLIILAS-GGPQALVNIMRTYTYEKLL  203 (529)
T ss_dssp             HHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHHHHHHHHHHCCCHHHH
T ss_pred             hhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHH-hhhh--hHHHHHHHhc-ccchHHHHHHHhhhhHHHH
Confidence            9987777777777899999999999999999999999999999 7654  2667777664 88999999993 3 44689


Q ss_pred             HHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728          251 DAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR  330 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~  330 (401)
                      ..++.++.+++.+++++..+++.|++++|+.++.   +++.+++..++++|.+++......  . ...|+++.|++ +++
T Consensus       204 ~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~---~~~~~~~~~a~~~l~~ls~~~~~~--~-~~~~~i~~Lv~-ll~  276 (529)
T d1jdha_         204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSDAATKQ--E-GMEGLLGTLVQ-LLG  276 (529)
T ss_dssp             HHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTT---SSCHHHHHHHHHHHHHHHTTCTTC--S-CCHHHHHHHHH-HTT
T ss_pred             HHHHHHHhhhhccccccchhhhhhhhhhHHHHhc---ccchhhhhhhhhHHHhccccccch--h-hhhhcchhhhh-hcc
Confidence            9999999999999999999999999999999999   678889999999999998654432  2 24588999999 678


Q ss_pred             cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 015728          331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQS-QCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~-~~~~~~~~~A~~~L~~l~~  392 (401)
                      .++...++.|+.+|++|+.++++.+..+.+.|+++.|+.++.. +..+..++.|.++|+.+..
T Consensus       277 ~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             cccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            8888999999999999999888888899999999999998854 3367889999999998863

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.2e-23  Score=200.18  Aligned_cols=284  Identities=16%  Similarity=0.175  Sum_probs=233.6

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch-hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      .+..+.+.|.+  ++++.|..|+..|+++.+.+.. ....+++.|++|.|+++|++.+.       ++++..|++ +|.+
T Consensus        14 ~i~~lv~~l~s--~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-------~~v~~~a~~-~L~~   83 (434)
T d1q1sc_          14 SVEDIVKGINS--NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-------SPIQFESAW-ALTN   83 (434)
T ss_dssp             CHHHHHHHHTS--SCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGG-------HHHHHHHHH-HHHH
T ss_pred             hHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCC-------HHHHHHHHH-HHHH
Confidence            35555555653  4788999999999999865543 25678899999999999965432       569999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-C-----
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-N-----  246 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~-----  246 (401)
                      ++.++++.+..+.+.|+++.++.+|++++.+.++.|+++|.++ +.++  ++.+..+... |+++.|+.++.. +     
T Consensus        84 la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl-~~~~--~~~~~~i~~~-~~~~~l~~~l~~~~~~~~~  159 (434)
T d1q1sc_          84 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNI-AGDG--SAFRDLVIKH-GAIDPLLALLAVPDLSTLA  159 (434)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-TCHHHHHHHTCSSCGGGSC
T ss_pred             HhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHH-hccc--hHHHHHHHHh-hhhhHHHHHHHhcccccch
Confidence            9877666666666899999999999999999999999999999 7655  2677777665 788999999932 2     


Q ss_pred             chhHHHHHHHHHHhcCCCchhHH-HHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHH
Q 015728          247 SEASDAGVRAFSALCSTETNRKT-LVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALV  325 (401)
Q Consensus       247 ~~~~~~a~~aL~~Ls~~~~n~~~-iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv  325 (401)
                      ....+.+++++.+++........ ....+++|.|+.++.   ..+.+++..++++|.+|+.++..+..+..+.|+++.|+
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv  236 (434)
T d1q1sc_         160 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV  236 (434)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHh---ccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcc
Confidence            23567788899999976654433 456789999999998   67889999999999999987665655556899999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHH
Q 015728          326 KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAE  396 (401)
Q Consensus       326 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e  396 (401)
                      + +++.++...+..++.+|.+++.++++.+..+.+.|+++.|+.++++. ++..++.|.++|..+....++
T Consensus       237 ~-ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~  305 (434)
T d1q1sc_         237 K-LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQD  305 (434)
T ss_dssp             H-HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHH
T ss_pred             c-ccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccch
Confidence            9 67788889999999999999998888888999999999999999887 889999999999999874443

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7e-23  Score=203.43  Aligned_cols=282  Identities=13%  Similarity=0.144  Sum_probs=241.2

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      .++..|.+.|... .+.+.|..|++.|.+++..++.....+.+.|+++.|+.+|.+++        .++++.|++ +|.+
T Consensus       119 g~i~~Lv~~l~~~-~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~--------~~i~~~a~~-~L~n  188 (503)
T d1wa5b_         119 GVVPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS--------VEVKEQAIW-ALGN  188 (503)
T ss_dssp             TCHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCC--------HHHHHHHHH-HHHH
T ss_pred             CChHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCC--------hhHHHHHHH-HHHH
Confidence            5677888877643 45778999999999999999888889999999999999999876        459999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASD  251 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~  251 (401)
                      |+.++...+..+.+.|+++.|+.++.+.+...+..++++|.++ +....  ........ .|+++.|+.++ +++.+.+.
T Consensus       189 ia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl-~~~~~--~~~~~~~~-~~~l~~l~~~l~~~d~~~~~  264 (503)
T d1wa5b_         189 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL-CRGKK--PQPDWSVV-SQALPTLAKLIYSMDTETLV  264 (503)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH-HCCSS--SCCCHHHH-GGGHHHHHHHTTCCCHHHHH
T ss_pred             HhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHH-hcCCc--cchHHHHH-HHHHHHHHHHhccccHHHHH
Confidence            9987777777777899999999999999999999999999999 54431  22222222 47899999999 56778999


Q ss_pred             HHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh
Q 015728          252 AGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR  330 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~  330 (401)
                      .++++|.+|+.... ....+++.|+++.++.++.   +++..++..++.+|.+++.+.+.....+.+.|+++.|.. +++
T Consensus       265 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~-ll~  340 (503)
T d1wa5b_         265 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS---HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL-LLS  340 (503)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTT
T ss_pred             HHHHHHHhhccCCchhhhhhhhhhhhhhhhhccc---CCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHH-Hhc
Confidence            99999999996554 5677889999999999999   678889999999999999876665555558899999999 678


Q ss_pred             cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728          331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  393 (401)
                      +.++..++.++++|.+++.++++....+++.|+++.++.++..+ +..++..|.++|..+..+
T Consensus       341 ~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         341 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG  402 (503)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhc
Confidence            88888999999999999998888888999999999999999988 889999999999988763

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.5e-23  Score=197.67  Aligned_cols=282  Identities=11%  Similarity=0.171  Sum_probs=235.1

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      .++..|.++|.+. .+.+.|..|++.|.+++..++..+..+.+.|++|.|+.+|.+++        .++++.|++ +|.+
T Consensus        56 g~i~~Lv~lL~~~-~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~--------~~~~~~a~~-~L~n  125 (434)
T d1q1sc_          56 GLIPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH--------AHISEQAVW-ALGN  125 (434)
T ss_dssp             TCHHHHHHHTTCG-GGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC--------HHHHHHHHH-HHHH
T ss_pred             CCHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCC--------HHHHHHHHH-HHHH
Confidence            5688888888644 34678999999999999999889999999999999999998876        459999999 9999


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCH-----HHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCC
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSC-----SIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHN  246 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~-----~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~  246 (401)
                      ++.++++.+..+.+.|+++.++.++...+.     .....+++.+.++ ....   .....+....++++.|+.++ +++
T Consensus       126 l~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~---~~~~~~~~~~~~l~~l~~ll~~~~  201 (434)
T d1q1sc_         126 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL-CRNK---NPAPPLDAVEQILPTLVRLLHHND  201 (434)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH-TCCC---TTCCCHHHHHHHHHHHHHHTTCSC
T ss_pred             HhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHH-hhcc---cccchhhhhhhHHHHHHHHHhccc
Confidence            998777777777788999999999976543     3456677788888 5543   22222222347889999999 467


Q ss_pred             chhHHHHHHHHHHhcCCCc-hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCH-hhHHHHHhCCCcHHHH
Q 015728          247 SEASDAGVRAFSALCSTET-NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIE-NSKDALINNPNGVYAL  324 (401)
Q Consensus       247 ~~~~~~a~~aL~~Ls~~~~-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~-~~~~~~~~~~g~i~~L  324 (401)
                      .+.+..++++|.+|+..+. .+..+.+.|+++.|++++.   +++..++..++.+|.+++... +.+..+. +.|+++.|
T Consensus       202 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~---~~~~~~~~~al~~l~~l~~~~~~~~~~~~-~~~~~~~l  277 (434)
T d1q1sc_         202 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVF  277 (434)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGH
T ss_pred             cchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccc---cchhhhhhchhhhhhhHHhhhhHHHHHHH-hccccchH
Confidence            7799999999999997665 4555678999999999999   678899999999999999755 4555665 78999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728          325 VKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       325 v~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  394 (401)
                      ++ ++++.++..++.|+.+|.+|+..+.+....+.+.|+++.++.++..+ +...|..|.++|..+..+.
T Consensus       278 ~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         278 PS-LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             HH-HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHS
T ss_pred             HH-hhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcC
Confidence            99 67888888999999999999998888888899999999999999888 8999999999999988754

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=7.5e-23  Score=203.20  Aligned_cols=285  Identities=18%  Similarity=0.194  Sum_probs=236.8

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcC-chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRES-PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      +.+..+.+.+.  +++.+.+..|+..++++.... ......+++.|++|.|+.+|.+...       ..++..|++ +|.
T Consensus        76 ~~l~~~~~~~~--s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~-------~~iq~~a~~-~L~  145 (503)
T d1wa5b_          76 QELPQMTQQLN--SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-------EMLQLEAAW-ALT  145 (503)
T ss_dssp             CCHHHHHHHHS--CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-------HHHHHHHHH-HHH
T ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCC-------HHHHHHHHH-HHH
Confidence            34555555453  346778999999999987543 3356788899999999999986543       569999999 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhH
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEAS  250 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~  250 (401)
                      +++.++++....+.+.|+++.++.+|.+++.++++.|+++|.+| +.++  ++++..+... |++++|+.++. .+...+
T Consensus       146 ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~ni-a~~~--~~~r~~l~~~-~~~~~L~~ll~~~~~~~~  221 (503)
T d1wa5b_         146 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV-AGDS--TDYRDYVLQC-NAMEPILGLFNSNKPSLI  221 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-TCHHHHHHGGGSCCHHHH
T ss_pred             HHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHH-hhhh--HHHHHHHHhh-cccccchhhcccCCHHHH
Confidence            99987777766777899999999999999999999999999999 7654  3788888775 88999999994 556799


Q ss_pred             HHHHHHHHHhcCCCch-hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhH-HHHHhCCCcHHHHHHHH
Q 015728          251 DAGVRAFSALCSTETN-RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSK-DALINNPNGVYALVKMV  328 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~-~~~~~~~g~i~~Lv~~l  328 (401)
                      +.++++|.+|+....+ .......|++|.|+.++.   +.+.+++..++++|.+|+...... ..+. +.|+++.++. +
T Consensus       222 ~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~---~~d~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~-l  296 (503)
T d1wa5b_         222 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVE-L  296 (503)
T ss_dssp             HHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHH-G
T ss_pred             HHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHhhccCCchhhhhhh-hhhhhhhhhh-c
Confidence            9999999999976554 334456789999999998   678889999999999999765544 4554 8899999999 6


Q ss_pred             HhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          329 FRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       329 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      ++.++...+..|+.+|.+++.+++.....+.+.|+++.|..+++++ ++..++.+.|+|..+....++.
T Consensus       297 l~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~  364 (503)
T d1wa5b_         297 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQ  364 (503)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHH
Confidence            7788889999999999999998888888899999999999999887 8999999999999987645443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-23  Score=209.86  Aligned_cols=279  Identities=11%  Similarity=0.110  Sum_probs=230.1

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh-cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ-LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQK  171 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~  171 (401)
                      ..++.|.++|.+  .+...+..|+..|.++++.++ .|..+++ .|+++.|+.+|+....       .++++.|+. +|.
T Consensus        17 ~aip~L~~lL~~--~~~~v~~~A~~~l~~l~~~~~-~~~~~~~~~~~v~~l~~~L~~~~~-------~~~~~~a~~-~L~   85 (529)
T d1jdha_          17 RAIPELTKLLND--EDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTND-------VETARCTAG-TLH   85 (529)
T ss_dssp             CHHHHHHHHHTC--SCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCC-------HHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhccH-HHHHHHHhhhHHHHHHHHHcCCCC-------HHHHHHHHH-HHH
Confidence            457778888863  467899999999999987655 5555554 5889999999976543       568999999 999


Q ss_pred             hhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhH
Q 015728          172 LLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEAS  250 (401)
Q Consensus       172 ~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~  250 (401)
                      +++.+++.. ..+.+.|+|+.|+.+|++++.+++..|+.+|.+| +.+.+  ..+..+.. .|+|++|+.+| +++.+.+
T Consensus        86 ~l~~~~~~~-~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l-~~~~~--~~~~~~~~-~g~i~~Lv~lL~~~~~~~~  160 (529)
T d1jdha_          86 NLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL-LLHQE--GAKMAVRL-AGGLQKMVALLNKTNVKFL  160 (529)
T ss_dssp             HHTTSHHHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH-HHHCT--THHHHHHH-HTHHHHHHHGGGCCCHHHH
T ss_pred             HHhCCchhH-HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh-hcccc--hhhhHHHh-cCCchHHHHHHHccChHHH
Confidence            999766554 4555889999999999999999999999999999 76552  55666666 48899999999 4567799


Q ss_pred             HHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHH
Q 015728          251 DAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVF  329 (401)
Q Consensus       251 ~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~  329 (401)
                      ..++++|.+++. +++++..+++.|++++|+.+|..  +....++..++.+|.+++.+++++..++ +.|+++.|+. ++
T Consensus       161 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~~~~~~l~~ls~~~~~~~~~~-~~g~~~~L~~-ll  236 (529)
T d1jdha_         161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGL-HL  236 (529)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTSTTHHHHHH-HTTHHHHHHT-TT
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHh--hhhHHHHHHHHHHHhhhhccccccchhh-hhhhhhhHHH-Hh
Confidence            999999999996 45577888899999999999985  5566789999999999999999999886 7899999999 57


Q ss_pred             hcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728          330 RVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       330 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  395 (401)
                      ...+...+..++.+|.+++....   ......|+++.|+.++.++ ++..++.|.++|..+....+
T Consensus       237 ~~~~~~~~~~a~~~l~~ls~~~~---~~~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~~~  298 (529)
T d1jdha_         237 TDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNY  298 (529)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTTCT---TCSCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCH
T ss_pred             cccchhhhhhhhhHHHhcccccc---chhhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccchh
Confidence            77788899999999999986542   1233468899999999887 88999999999998875333

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.8e-22  Score=191.09  Aligned_cols=281  Identities=12%  Similarity=0.128  Sum_probs=221.7

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      ++.|++.|+  +++++.|..|+..|.++|.+++.+|..+++.|+||.|+++|++++        +++++.|++ +|.+|+
T Consensus         4 ip~lv~~L~--~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~--------~~v~~~a~~-aL~~L~   72 (457)
T d1xm9a1           4 IPKAVQYLS--SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN--------QNVQQAAAG-ALRNLV   72 (457)
T ss_dssp             HHHHHHHHH--SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC--------HHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHhC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCC--------HHHHHHHHH-HHHHHH
Confidence            567888886  457899999999999999999999999999999999999998876        559999999 999999


Q ss_pred             CCchhhhhhcccCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccc--------------------------------
Q 015728          175 VGETESLNLLNEESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHE--------------------------------  221 (401)
Q Consensus       175 ~~~~~~~~~v~~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~--------------------------------  221 (401)
                      .++++.+..+.+.|+++.++.++.+ .+.+++..|+.+|.++ +....                                
T Consensus        73 ~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  151 (457)
T d1xm9a1          73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL-SSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMS  151 (457)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH-HTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-------
T ss_pred             cCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHH-HhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhh
Confidence            7777777777789999999998865 5678888888888888 44321                                


Q ss_pred             ---------------------hhhhhhhhccchHHHHHHHHH--------------------------------------
Q 015728          222 ---------------------TKELCCKLGKDDRLLREIISL--------------------------------------  242 (401)
Q Consensus       222 ---------------------~~~~~~~i~~~~g~i~~Lv~l--------------------------------------  242 (401)
                                           .++++..+....|+++.|+.+                                      
T Consensus       152 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  231 (457)
T d1xm9a1         152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR  231 (457)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHH
T ss_pred             cccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence                                 012222222223444444433                                      


Q ss_pred             ------------------------------------------------------------c-c-CCchhHHHHHHHHHHh
Q 015728          243 ------------------------------------------------------------V-H-HNSEASDAGVRAFSAL  260 (401)
Q Consensus       243 ------------------------------------------------------------L-~-~~~~~~~~a~~aL~~L  260 (401)
                                                                                  + . .+...+..+.+++.++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l  311 (457)
T d1xm9a1         232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL  311 (457)
T ss_dssp             HHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence                                                                        2 1 1233566777788888


Q ss_pred             cCCCc------hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc---
Q 015728          261 CSTET------NRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV---  331 (401)
Q Consensus       261 s~~~~------n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~---  331 (401)
                      +....      .+..+.+.|++|.|+++|.   +.+..++..++.+|.+|+.+++++..+.  .++++.|+.++...   
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~---~~~~~v~~~a~~~l~~La~~~~~~~~i~--~~~i~~li~~L~~~~~~  386 (457)
T d1xm9a1         312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQ---SGNSDVVRSGASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGN  386 (457)
T ss_dssp             TTCSSSHHHHHHHHHHTTSCCHHHHHHHTT---CSCHHHHHHHHHHHHHHHTSGGGHHHHH--HHTHHHHHHTTTSCCSC
T ss_pred             hhccccchHHHHHHHHHHcCChHHHHhhhc---CccHHHHHHHHHHHHHHhhChhHHHHHH--HhhHHHHHHHHhccccC
Confidence            75443      3455567899999999998   6888999999999999999999998885  37899999954322   


Q ss_pred             --CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          332 --SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       332 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                        .+..++..|+.+|.+|+.++++.++.+++.|+++.|+.++.+..++.+++.|..+|..|..
T Consensus       387 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             STTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             cCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence              1235788899999999988888899999999999999999887688999999999999865

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.4e-19  Score=161.40  Aligned_cols=192  Identities=8%  Similarity=0.058  Sum_probs=161.5

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHH-HhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLK-QLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      .+.+.+..|+..|.+++. +..+++.+.+.|++++|+. +|.+++        ++++..|++ +|.+++.+++..+..+.
T Consensus        29 ~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~--------~~vr~~A~~-~L~~l~~~~~~~~~~~~   98 (264)
T d1xqra1          29 ADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGA--------AGLRWRAAQ-LIGTCSQNVAAIQEQVL   98 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSS--------HHHHHHHHH-HHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCC--------HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            457889999999999995 4558888999999999987 566655        569999999 99999987777777777


Q ss_pred             cCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhc-C
Q 015728          186 EESKMESFIVLFEH-GSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALC-S  262 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~-~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls-~  262 (401)
                      +.|+|+.|+.+|.+ .+..++..++++|.++ ....  +.++..+... |+++.|+.+| +++...+..++++|.+|+ .
T Consensus        99 ~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l-~~~~--~~~~~~~~~~-~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~  174 (264)
T d1xqra1          99 GLGALRKLLRLLDRDACDTVRVKALFAISCL-VREQ--EAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG  174 (264)
T ss_dssp             HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HcCchHHHHHHhhcCCCHHHHHHHHHHHHHH-hccc--hhhHHHHHHh-hhhhHHHHHHhcCchHHHHHHHHHHHHHHhc
Confidence            89999999999975 4688999999999999 5543  2677777775 7789999999 567779999999999998 5


Q ss_pred             CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHH
Q 015728          263 TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALI  315 (401)
Q Consensus       263 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~  315 (401)
                      +++++..+++.|++|.|+++|.   +++.++++.|+.+|.+|+.. ++....+.
T Consensus       175 ~~~~~~~~~~~~~v~~L~~lL~---~~~~~~~~~a~~aL~~L~~~~~~~~~~~~  225 (264)
T d1xqra1         175 HPEHKGTLCSMGMVQQLVALVR---TEHSPFHEHVLGALCSLVTDFPQGVRECR  225 (264)
T ss_dssp             CGGGHHHHHHTTHHHHHHHHHT---SCCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHhhhHHHHHHHHc---CCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            7789999999999999999998   68889999999999999975 44545553

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.80  E-value=1.5e-20  Score=137.94  Aligned_cols=75  Identities=51%  Similarity=0.931  Sum_probs=70.7

Q ss_pred             CCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728            7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG   81 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~   81 (401)
                      +++|++|.||||+++|++||+++|||+||+.||.+|+..+...||.|+.++...++.+|..++++|++|+++||+
T Consensus         3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~   77 (78)
T d1t1ha_           3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI   77 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred             CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCc
Confidence            468999999999999999999999999999999999987777899999999988999999999999999999975

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-18  Score=157.08  Aligned_cols=193  Identities=17%  Similarity=0.153  Sum_probs=161.5

Q ss_pred             hHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHH-HhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHH
Q 015728          158 YVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLL  236 (401)
Q Consensus       158 ~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i  236 (401)
                      +.+.++.|+. +|..|+.+.++.+.++ ..|++++++. ++++++.++|..|+.+|.++ +.++  +.++..+... |++
T Consensus        30 ~~~~~~~Al~-~L~~L~~~~d~a~~l~-~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l-~~~~--~~~~~~~~~~-~~i  103 (264)
T d1xqra1          30 DQQEREGALE-LLADLCENMDNAADFC-QLSGMHLLVGRYLEAGAAGLRWRAAQLIGTC-SQNV--AAIQEQVLGL-GAL  103 (264)
T ss_dssp             HHHHHHHHHH-HHHHHHTSHHHHHHHH-HTTHHHHHHHTTTTCSSHHHHHHHHHHHHHH-HTTC--HHHHHHHHHT-THH
T ss_pred             CHHHHHHHHH-HHHHHHcCHHHHHHHH-HcCCHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHH--HHHHHHHHHc-Cch
Confidence            3567888999 9999986555555444 7899999986 67888999999999999999 7654  2677777775 889


Q ss_pred             HHHHHHc-c-CCchhHHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhC-CHhhHH
Q 015728          237 REIISLV-H-HNSEASDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLA-IENSKD  312 (401)
Q Consensus       237 ~~Lv~lL-~-~~~~~~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~-~~~~~~  312 (401)
                      |.|+.+| + .+..++..++++|.+|+. ++.++..+.+.|+++.|+++|.   +++..++..++.+|.+|+. +++.+.
T Consensus       104 ~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~  180 (264)
T d1xqra1         104 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---QQVQKLKVKSAFLLQNLLVGHPEHKG  180 (264)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh---cCchHHHHHHHHHHHHHHhccHHHHH
Confidence            9999999 3 356699999999999996 5557888899999999999999   6788999999999999985 577777


Q ss_pred             HHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 015728          313 ALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICA  361 (401)
Q Consensus       313 ~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  361 (401)
                      .+. +.|+++.|+. +++++++..++.|+.+|++|+..+++.+..+...
T Consensus       181 ~~~-~~~~v~~L~~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         181 TLC-SMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHH-HTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             HHH-HhhhHHHHHH-HHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            776 7899999999 5778888999999999999999888777666643

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.8e-20  Score=136.40  Aligned_cols=74  Identities=30%  Similarity=0.522  Sum_probs=69.6

Q ss_pred             CCCCCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCC
Q 015728            7 MTIPHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGG   80 (401)
Q Consensus         7 ~~~~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~   80 (401)
                      .++|++|.||||+++|++||+++|||+||+.||.+|+..+...||.|+.++...++.+|..++++|++|.++||
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~   75 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG   75 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCC
Confidence            46799999999999999999999999999999999998777889999999988889999999999999999886

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.3e-18  Score=161.03  Aligned_cols=241  Identities=12%  Similarity=0.093  Sum_probs=189.2

Q ss_pred             CChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 015728          137 GFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVII  216 (401)
Q Consensus       137 G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~  216 (401)
                      +.||.||++|+++++        +++..|++ +|.+|+.++++.+..+.+.|+||.|+.+|+++++++|..|+.+|.+| 
T Consensus         2 ~~ip~lv~~L~~~~~--------~~~~~a~~-~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L-   71 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDE--------KYQAIGAY-YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL-   71 (457)
T ss_dssp             CCHHHHHHHHHSSCT--------HHHHHHHH-HHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHhCCCCH--------HHHHHHHH-HHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHH-
Confidence            479999999998874        59999999 99999988777777887999999999999999999999999999999 


Q ss_pred             hcccchhhhhhhhccchHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHH-Hh--------
Q 015728          217 SSSHETKELCCKLGKDDRLLREIISLVH--HNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYI-SN--------  285 (401)
Q Consensus       217 s~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL-~~--------  285 (401)
                      +..+  ++++..+.+. |+++.|+.++.  .+.+++..|+++|.+|+..+.++..+...|. +.++..+ ..        
T Consensus        72 ~~~~--~~~~~~i~~~-g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~  147 (457)
T d1xm9a1          72 VFRS--TTNKLETRRQ-NGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGN  147 (457)
T ss_dssp             HSSC--HHHHHHHHHT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---
T ss_pred             HcCC--HHHHHHHHHC-CChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcch
Confidence            7544  3888888886 78899999983  4556999999999999998888887777554 4444443 21        


Q ss_pred             ----hccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHh-------------------------------
Q 015728          286 ----ALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFR-------------------------------  330 (401)
Q Consensus       286 ----~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~-------------------------------  330 (401)
                          ....+..++..++.+|..++.+++++..+....|+++.|++++..                               
T Consensus       148 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  227 (457)
T d1xm9a1         148 SNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP  227 (457)
T ss_dssp             ------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSC
T ss_pred             hhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHH
Confidence                013456788999999999999999988887677888888774311                               


Q ss_pred             -------------------------------------------------------------------cCChhHHHHHHHH
Q 015728          331 -------------------------------------------------------------------VSDHEGSENAINS  343 (401)
Q Consensus       331 -------------------------------------------------------------------~~~~~~~~~a~~~  343 (401)
                                                                                         ..++..++.+..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~  307 (457)
T d1xm9a1         228 TRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGA  307 (457)
T ss_dssp             CHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHH
Confidence                                                                               1122334455556


Q ss_pred             HHHHhcCCH-----HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          344 LMMICCDSL-----QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       344 L~~l~~~~~-----~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      +.+++....     ..+..+.+.|+++.|+.+++++ ++.+++.|.++|..++.
T Consensus       308 l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~  360 (457)
T d1xm9a1         308 LQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             HHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhh
Confidence            666654432     2344556789999999999888 89999999999999986

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.9e-17  Score=126.10  Aligned_cols=79  Identities=33%  Similarity=0.421  Sum_probs=69.6

Q ss_pred             CccCCCCCCcccccccccccCCceEcCcc-ccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhCCC
Q 015728            3 EDRQMTIPHLFRCPISLDLFTDPVTLCTG-QTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMGGG   81 (401)
Q Consensus         3 ~~~~~~~~~~~~C~iC~~~~~~Pv~~~Cg-h~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~~~   81 (401)
                      ++...++|++|.||||+++|+|||+++|| |+||+.||.+|+. ....||.|+.++...++.+|..+++.|+.|++.+..
T Consensus        13 ~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~-~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~   91 (98)
T d1wgma_          13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-SDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT-TSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             HhhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHH-hcCCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence            34455689999999999999999999865 5999999999997 466899999999988999999999999999998854


Q ss_pred             C
Q 015728           82 Q   82 (401)
Q Consensus        82 ~   82 (401)
                      .
T Consensus        92 ~   92 (98)
T d1wgma_          92 Q   92 (98)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.7e-16  Score=115.79  Aligned_cols=63  Identities=17%  Similarity=0.322  Sum_probs=52.8

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC-CcHHHHHHH
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV-PNHTLRHLI   72 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~-~n~~l~~~i   72 (401)
                      .+.+.||||.+.|.+|++++|||+||+.|+.+|+..+...||.||.++...++. +...+.+++
T Consensus        21 ~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             ccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            356799999999999999999999999999999987777899999998766544 555555554

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.7e-16  Score=119.44  Aligned_cols=68  Identities=21%  Similarity=0.482  Sum_probs=59.3

Q ss_pred             CCcccccccccccCCceEcCccccccHHhHHHHHHcC--CCCCCCCcccCCCCCCCCcHHHHHHHHHHHH
Q 015728           10 PHLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAG--NLTCPVTMQTLHDPSIVPNHTLRHLINQWLQ   77 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~--~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~   77 (401)
                      .+.+.||||.++|.+|++++|||+||..|+.+|+...  ...||.|+..+....+.+|..+.++++.+++
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999753  3679999999988888888887788777754

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.6e-15  Score=113.55  Aligned_cols=68  Identities=18%  Similarity=0.386  Sum_probs=59.7

Q ss_pred             CCCcccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCCCcHHHHHHHHHHHHhC
Q 015728            9 IPHLFRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIVPNHTLRHLINQWLQMG   79 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~~n~~l~~~i~~~~~~~   79 (401)
                      +.+.+.||||.++|.+|+++ +|||+||..||.+|+.   ..||.|+..+...++.+|..++.+++.+++.+
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~~   87 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchhhCcccHHHHHHHHHHHHHH
Confidence            34678999999999999986 7999999999999975   35999999998888999999999999886543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=6.2e-14  Score=94.77  Aligned_cols=50  Identities=24%  Similarity=0.353  Sum_probs=44.0

Q ss_pred             ccccccccccCCceEc-CccccccHHhHHHHHHcCCCCCCCCcccCCCCCCC
Q 015728           13 FRCPISLDLFTDPVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSIV   63 (401)
Q Consensus        13 ~~C~iC~~~~~~Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~~   63 (401)
                      +.||||+++|++||.+ .|||+||+.||.+|+.+ +..||.||.++...++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLi   51 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIV   51 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCE
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhce
Confidence            5799999999999987 59999999999999995 55799999998876554

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.6e-13  Score=95.76  Aligned_cols=49  Identities=16%  Similarity=0.255  Sum_probs=44.6

Q ss_pred             cccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728           12 LFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        12 ~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      ...|+||.+.+.+|+.++|||.||..|+.+|+..+...||.||..+...
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            3569999999999999999999999999999987778899999998754

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.9e-12  Score=88.58  Aligned_cols=52  Identities=19%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             CcccccccccccC-Cc----eEcCccccccHHhHHHHHHcCCCCCCCCcccCCCCCC
Q 015728           11 HLFRCPISLDLFT-DP----VTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDPSI   62 (401)
Q Consensus        11 ~~~~C~iC~~~~~-~P----v~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~~~   62 (401)
                      ++..||||++.+. .|    +.++|||.||..|+.+|+..+...||.||+.+....+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            5678999998653 22    4568999999999999998777789999999876544

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.7e-12  Score=87.13  Aligned_cols=46  Identities=17%  Similarity=0.218  Sum_probs=40.3

Q ss_pred             CcccccccccccCCceEcCccccccHHhHHHHHHcCCCCCCCCcccCCCC
Q 015728           11 HLFRCPISLDLFTDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHDP   60 (401)
Q Consensus        11 ~~~~C~iC~~~~~~Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~~   60 (401)
                      +.+.|+||++.+.+|++++|||+||..|+.+|    ...||.||..+...
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~   50 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCC
Confidence            45799999999999999999999999999753    56799999988754

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.09  E-value=2e-11  Score=85.73  Aligned_cols=44  Identities=27%  Similarity=0.526  Sum_probs=39.1

Q ss_pred             cccccccccCCceE-cCccccccHHhHHHHHHcCCCCCCCCcccCC
Q 015728           14 RCPISLDLFTDPVT-LCTGQTYDRSSIEKWLAAGNLTCPVTMQTLH   58 (401)
Q Consensus        14 ~C~iC~~~~~~Pv~-~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~   58 (401)
                      .||||.+.|.+|+. ++|||+||..|+.+|+.. ...||.||..+.
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            59999999988866 799999999999999984 578999998875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.8e-11  Score=78.47  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=39.0

Q ss_pred             ccccccccccCC----ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           13 FRCPISLDLFTD----PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        13 ~~C~iC~~~~~~----Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      +.||||.+.|..    +..++|||.||..|+.+|+..+...||.||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            469999998854    23458999999999999998666789999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.96  E-value=1.2e-10  Score=77.66  Aligned_cols=48  Identities=23%  Similarity=0.533  Sum_probs=39.8

Q ss_pred             CCCcccccccccccCC---ceEc-CccccccHHhHHHHHHcCCCCCCCCcccC
Q 015728            9 IPHLFRCPISLDLFTD---PVTL-CTGQTYDRSSIEKWLAAGNLTCPVTMQTL   57 (401)
Q Consensus         9 ~~~~~~C~iC~~~~~~---Pv~~-~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~   57 (401)
                      +.++..|+||++.|.+   .+.+ +|||.||..|+.+|+. .+..||.||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-TCCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHH-hCCcCCCCCCEe
Confidence            4567789999999975   3344 6999999999999998 567899999865

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=1.3e-08  Score=78.88  Aligned_cols=50  Identities=12%  Similarity=0.211  Sum_probs=39.6

Q ss_pred             CCcccccccccccCCc------------------eEcCccccccHHhHHHHHHcC----CCCCCCCcccCCC
Q 015728           10 PHLFRCPISLDLFTDP------------------VTLCTGQTYDRSSIEKWLAAG----NLTCPVTMQTLHD   59 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~P------------------v~~~Cgh~fc~~Ci~~~~~~~----~~~CP~c~~~~~~   59 (401)
                      ..+..|+||++.|.++                  ..++|||.||..||..|+..+    ..+||.||..+..
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            3456799999987643                  246899999999999999853    4579999987644

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=4.8e-06  Score=81.90  Aligned_cols=259  Identities=11%  Similarity=0.093  Sum_probs=149.7

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcC--chhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRES--PPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~--~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ++.|.+.|++  ++...|..|++.|..++..-  +..+..     .+|.|.+++.+.+         +++..++. .|.+
T Consensus        12 i~~l~~~l~~--~~~~~R~~a~~~l~~ia~~lg~~~~~~~-----lip~l~~~~~~~~---------ev~~~~~~-~l~~   74 (588)
T d1b3ua_          12 IAVLIDELRN--EDVQLRLNSIKKLSTIALALGVERTRSE-----LLPFLTDTIYDED---------EVLLALAE-QLGT   74 (588)
T ss_dssp             HHHHHHHTTC--SCHHHHHHHHHTHHHHHHHSCHHHHHHT-----HHHHHHHTCCCCH---------HHHHHHHH-HHTT
T ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhCcHhhHHH-----HHHHHHHHhcCcH---------HHHHHHHH-HHHH
Confidence            5556666663  46778999999999887642  223333     4888888876543         35555555 5555


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccCCc-hhHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHHNS-EASD  251 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~  251 (401)
                      +...- ...+.+  ...++.+..++...+..+|..|+.+|..+ .....    ...+.  .-++|.+..+.+++. ..+.
T Consensus        75 ~~~~~-~~~~~~--~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i-~~~~~----~~~~~--~~l~p~i~~L~~~~~~~~r~  144 (588)
T d1b3ua_          75 FTTLV-GGPEYV--HCLLPPLESLATVEETVVRDKAVESLRAI-SHEHS----PSDLE--AHFVPLVKRLAGGDWFTSRT  144 (588)
T ss_dssp             CSGGG-TSGGGG--GGGHHHHHHHTTSSCHHHHHHHHHHHHHH-HTTSC----HHHHH--HTHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHc-CChhHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHH-HHhCC----HHHHH--HHHHHHHHHHhcccchHHHH
Confidence            44110 001111  12466666777778888999999999998 54321    11121  123344444555443 3566


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhc
Q 015728          252 AGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRV  331 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~  331 (401)
                      .|+..+..+....+..   .....++.+.+++.   +.++.++..++.++..++..-.....   ....++.+.+ +.++
T Consensus       145 ~a~~ll~~~~~~~~~~---~~~~l~~~~~~l~~---D~~~~VR~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~-l~~d  214 (588)
T d1b3ua_         145 SACGLFSVCYPRVSSA---VKAELRQYFRNLCS---DDTPMVRRAAASKLGEFAKVLELDNV---KSEIIPMFSN-LASD  214 (588)
T ss_dssp             HHGGGHHHHTTTSCHH---HHHHHHHHHHHHHT---CSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHHHHHH-HHTC
T ss_pred             HHHHHHHHHHHHhhHH---HHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHhcHHHH---HHHHHHHHHH-HhcC
Confidence            6666666665432221   11224677777777   67788888888888888754222111   1134555555 5667


Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhh
Q 015728          332 SDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKW  394 (401)
Q Consensus       332 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  394 (401)
                      .+..++..|+.+|..++..-+.   .....-.++.+..++++. +..+|..++..|..+.+.+
T Consensus       215 ~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~  273 (588)
T d1b3ua_         215 EQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAV  273 (588)
T ss_dssp             SCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHh
Confidence            7777788888888777643211   111122455666666555 6667777776666665533

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.51  E-value=4.3e-08  Score=66.41  Aligned_cols=50  Identities=16%  Similarity=0.248  Sum_probs=41.0

Q ss_pred             CCcccccccccccCCceEcCc-----cccccHHhHHHHHHc-CCCCCCCCcccCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCT-----GQTYDRSSIEKWLAA-GNLTCPVTMQTLHD   59 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~C-----gh~fc~~Ci~~~~~~-~~~~CP~c~~~~~~   59 (401)
                      .+...|+||++.+.++...+|     +|.|+..|+.+|+.. +..+||.|+..+..
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            345679999999988876654     599999999999974 66789999988753

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.7e-08  Score=73.15  Aligned_cols=45  Identities=18%  Similarity=0.381  Sum_probs=36.4

Q ss_pred             cccccccccCC------------------ceEcCccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           14 RCPISLDLFTD------------------PVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        14 ~C~iC~~~~~~------------------Pv~~~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      .|+||.+.+.+                  ++.++|||.|+..||.+|+. .+.+||.||+.+..
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~   85 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWEF   85 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCCE
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHH-HCCcCCCCCCcccc
Confidence            48888876654                  23468999999999999998 56789999998753

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=2e-05  Score=69.02  Aligned_cols=230  Identities=10%  Similarity=0.005  Sum_probs=140.0

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      ...|.+.|.  +.++..+..|+..|.....           ..+++.|+.+|++++        +.++..|+. +|..+.
T Consensus        21 ~~~L~~~L~--d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~--------~~vr~~a~~-aL~~l~   78 (276)
T d1oyza_          21 DDELFRLLD--DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN--------YIRRDIGAF-ILGQIK   78 (276)
T ss_dssp             HHHHHHHTT--CSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS--------HHHHHHHHH-HHHHSC
T ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCC--------HHHHHHHHH-HHHHhc
Confidence            344556666  4578899999999876531           235899999998876        459999999 887765


Q ss_pred             CCchhhhhhcccCCchHHHHH-HhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHH
Q 015728          175 VGETESLNLLNEESKMESFIV-LFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDA  252 (401)
Q Consensus       175 ~~~~~~~~~v~~~g~i~~Lv~-~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~  252 (401)
                      .......      ..++.+.. ++++.+..++..++.+|..+ ....   .    +. ...+++.+...+. .+..++..
T Consensus        79 ~~~~~~~------~~~~~l~~~~l~d~~~~vr~~a~~aL~~~-~~~~---~----~~-~~~~~~~l~~~~~d~~~~vr~~  143 (276)
T d1oyza_          79 ICKKCED------NVFNILNNMALNDKSACVRATAIESTAQR-CKKN---P----IY-SPKIVEQSQITAFDKSTNVRRA  143 (276)
T ss_dssp             CCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHH-HHHC---G----GG-HHHHHHHHHHHTTCSCHHHHHH
T ss_pred             ccccccc------chHHHHHHHHhcCCChhHHHHHHHHHHHH-cccc---c----hh-hHHHHHHHHHHhcCcchHHHHH
Confidence            3222111      12344444 45677899999999999998 4322   1    11 1246677777774 45557777


Q ss_pred             HHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHh----------------hHH----
Q 015728          253 GVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIEN----------------SKD----  312 (401)
Q Consensus       253 a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~----------------~~~----  312 (401)
                      ++.++..+.          +...++.++.++.   ..+...+..+..++........                .+.    
T Consensus       144 a~~~l~~~~----------~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (276)
T d1oyza_         144 TAFAISVIN----------DKATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAII  210 (276)
T ss_dssp             HHHHHHTC-------------CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHhhcc----------hHHHHHHHHHhcc---cccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhcc
Confidence            777766543          2234445555554   2333333333333333222110                000    


Q ss_pred             --HHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 015728          313 --ALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLK  388 (401)
Q Consensus       313 --~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~  388 (401)
                        ....+..+++.|++. +++  +.++..++.+|..+.           ..++++.|..++..+.+..+|..|...|+
T Consensus       211 al~~~~~~~~~~~L~~~-l~d--~~vr~~a~~aL~~ig-----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         211 GLSYRKDKRVLSVLCDE-LKK--NTVYDDIIEAAGELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHTTCGGGHHHHHHH-HTS--SSCCHHHHHHHHHHC-----------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             ccchhhhhhhHHHHHHH-hCC--hHHHHHHHHHHHHcC-----------CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence              001345678888884 443  357778888887763           13578999998877657788888877664

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.4e-05  Score=73.17  Aligned_cols=287  Identities=11%  Similarity=0.058  Sum_probs=171.9

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHh
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      +....+.+.+.+...+...+..++..+..++.........-.-...++.++..+.+.+..      .+++..++. .+..
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~------~~v~~~a~~-~l~~  199 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS------NNVKLAATN-ALLN  199 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCC------HHHHHHHHH-HHHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccC------HHHHHHHHH-HHHH
Confidence            556666666766666777777888888888765543322222244678888888776543      568888888 5555


Q ss_pred             hcCCchhhhh-hcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhH
Q 015728          173 LLVGETESLN-LLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEAS  250 (401)
Q Consensus       173 l~~~~~~~~~-~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~  250 (401)
                      +......... ........+.+...+.+++.+.+..+..+|..++....  +.....+..  ...+.+...+ +.+...+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~--~~~~~~l~~--~~~~~~~~~~~~~~~~~~  275 (458)
T d1ibrb_         200 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGP--ALFAITIEAMKSDIDEVA  275 (458)
T ss_dssp             HTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG--GGCTTTTTT--THHHHHHHHHHCSSHHHH
T ss_pred             HHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhH--HHHHHHHHH--HHHHHHHHHhccccHHHH
Confidence            5432222111 11112345666677788899999999999999833222  122233322  2223334444 3455678


Q ss_pred             HHHHHHHHHhcCCCc---------------------hhHHHHhcCcHHHHHHHHHhh----ccccchHHHHHHHHHHHHh
Q 015728          251 DAGVRAFSALCSTET---------------------NRKTLVQEGAINGLIAYISNA----LTRERSLAAIAMARIEQLL  305 (401)
Q Consensus       251 ~~a~~aL~~Ls~~~~---------------------n~~~iv~~G~v~~Lv~lL~~~----~~~~~~~~~~a~~~L~~La  305 (401)
                      ..|...+..++....                     ......-...+|.+.+.+...    .+.+..++..|..++..++
T Consensus       276 ~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~  355 (458)
T d1ibrb_         276 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA  355 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHH
Confidence            888888877753211                     011111122445555554321    0122346777888888777


Q ss_pred             CCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCC-HHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHH
Q 015728          306 AIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDS-LQAREEAICAGVLTQLLLLLQSQCSNRTKTKAR  384 (401)
Q Consensus       306 ~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~  384 (401)
                      ......  +.  ...++.+.+ .+++++...++.|+.+|..++... ++.. .-.-...++.++..++++ ++.+|..|.
T Consensus       356 ~~~~~~--~~--~~l~~~i~~-~l~s~~~~~r~aal~~l~~i~~~~~~~~~-~~~l~~i~~~l~~~l~d~-~~~VR~~a~  428 (458)
T d1ibrb_         356 TCCEDD--IV--PHVLPFIKE-HIKNPDWRYRDAAVMAFGCILEGPEPSQL-KPLVIQAMPTLIELMKDP-SVVVRDTAA  428 (458)
T ss_dssp             HHTTTT--HH--HHHHHHHHH-HTTCSSHHHHHHHHHHHHHTSSSSCTTTT-CTTTTTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred             HhccHh--hh--hHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHhcCHhHH-HHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            422111  11  123344445 466778889999999999988542 1211 112345788899999887 999999999


Q ss_pred             HHHHHHHHhhHHh
Q 015728          385 MLLKLLRSKWAEE  397 (401)
Q Consensus       385 ~~L~~l~~~~~e~  397 (401)
                      +.|..+.+..|+.
T Consensus       429 ~~l~~i~~~~~~~  441 (458)
T d1ibrb_         429 WTVGRICELLPEA  441 (458)
T ss_dssp             HHHHHHHHHGGGG
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999977765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7e-06  Score=80.66  Aligned_cols=264  Identities=12%  Similarity=0.126  Sum_probs=169.8

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      .+..+..+++  +.+...|..|+..|..+....+..  .+ +.-.+|.+..+..+..        ...+..|+. ++..+
T Consensus        88 ll~~l~~l~~--~~~~~Vr~~a~~~l~~i~~~~~~~--~~-~~~l~p~i~~L~~~~~--------~~~r~~a~~-ll~~~  153 (588)
T d1b3ua_          88 LLPPLESLAT--VEETVVRDKAVESLRAISHEHSPS--DL-EAHFVPLVKRLAGGDW--------FTSRTSACG-LFSVC  153 (588)
T ss_dssp             GHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTSCHH--HH-HHTHHHHHHHHHTCSS--------HHHHHHHGG-GHHHH
T ss_pred             HHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhCCHH--HH-HHHHHHHHHHHhcccc--------hHHHHHHHH-HHHHH
Confidence            3445544443  235678999999999998765422  22 3334565556555543        235666666 66666


Q ss_pred             cCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCchhHHH
Q 015728          174 LVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSEASDA  252 (401)
Q Consensus       174 ~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~  252 (401)
                      ...-...  ..  ...++.+..++++.++.+|..++..+..+ +..-.    ...+ . ..+++.+..+++ ++..++..
T Consensus       154 ~~~~~~~--~~--~~l~~~~~~l~~D~~~~VR~~a~~~l~~~-~~~~~----~~~~-~-~~l~~~l~~l~~d~~~~vr~~  222 (588)
T d1b3ua_         154 YPRVSSA--VK--AELRQYFRNLCSDDTPMVRRAAASKLGEF-AKVLE----LDNV-K-SEIIPMFSNLASDEQDSVRLL  222 (588)
T ss_dssp             TTTSCHH--HH--HHHHHHHHHHHTCSCHHHHHHHHHHHHHH-HHTSC----HHHH-H-HTHHHHHHHHHTCSCHHHHTT
T ss_pred             HHHhhHH--HH--HHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHhc----HHHH-H-HHHHHHHHHHhcCCchhhHHH
Confidence            5322111  11  12467777888889999999999999999 44321    1111 1 245677777774 45668999


Q ss_pred             HHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcC
Q 015728          253 GVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVS  332 (401)
Q Consensus       253 a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~  332 (401)
                      |+.+|..++..-+..  -...-.+|.+..++.   +.+..++..++.+|..++..-...  .. ....++.+.. +++++
T Consensus       223 a~~~l~~i~~~~~~~--~~~~~i~~~l~~~~~---D~~~~Vr~~~~~~l~~l~~~~~~~--~~-~~~l~~~l~~-ll~d~  293 (588)
T d1b3ua_         223 AVEACVNIAQLLPQE--DLEALVMPTLRQAAE---DKSWRVRYMVADKFTELQKAVGPE--IT-KTDLVPAFQN-LMKDC  293 (588)
T ss_dssp             HHHHHHHHHHHSCHH--HHHHHTHHHHHHHHT---CSSHHHHHHHHHTHHHHHHHHCHH--HH-HHTHHHHHHH-HHTCS
T ss_pred             HHHHHHHhhccCCHH--HHHHHHHHHHHHhcc---cccHHHHHHHHHhHHHHHHHhhhh--hh-hhhhhHHHHH-HHhcc
Confidence            999999887432221  112336788888887   678889999999999887532221  11 2246788888 67788


Q ss_pred             ChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          333 DHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       333 ~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      ++.++..|+..|..++..-. .......-...++.+..++.+. ++.+|..++..+..+..
T Consensus       294 ~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~~~~~l~~~~~  353 (588)
T d1b3ua_         294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSP  353 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHhhhhh
Confidence            88999999999998876522 2233344456677777777665 77888887777666554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=2.3e-05  Score=68.66  Aligned_cols=204  Identities=10%  Similarity=0.018  Sum_probs=130.3

Q ss_pred             cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015728          136 LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVI  215 (401)
Q Consensus       136 ~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l  215 (401)
                      ......|+.+|.+++        +.++..|+. .|..+.  +         ...++.|+.++++++..+|..|+.+|..+
T Consensus        18 ~~~~~~L~~~L~d~~--------~~vR~~A~~-~L~~~~--~---------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l   77 (276)
T d1oyza_          18 KLNDDELFRLLDDHN--------SLKRISSAR-VLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQI   77 (276)
T ss_dssp             TSCHHHHHHHTTCSS--------HHHHHHHHH-HHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHhcCCC--------HHHHHHHHH-HHHhhC--C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            445778899998876        559999999 777543  1         23589999999999999999999999888


Q ss_pred             HhcccchhhhhhhhccchHHHHHHHHHc--cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchH
Q 015728          216 ISSSHETKELCCKLGKDDRLLREIISLV--HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSL  293 (401)
Q Consensus       216 ~s~~~~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~  293 (401)
                       ....   ..      ....++.|...+  +.+..++..|+.+|.+++......    ....++.+...+.   +.+..+
T Consensus        78 -~~~~---~~------~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~---d~~~~v  140 (276)
T d1oyza_          78 -KICK---KC------EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAF---DKSTNV  140 (276)
T ss_dssp             -CCCT---TT------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTT---CSCHHH
T ss_pred             -cccc---cc------ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhc---CcchHH
Confidence             5432   11      123456666655  456679999999999987543321    1235667777776   566677


Q ss_pred             HHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHH---------------HHH-
Q 015728          294 AAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQA---------------REE-  357 (401)
Q Consensus       294 ~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---------------~~~-  357 (401)
                      +..++.++...           .+...++.++. ++...+...+..+..++..+.......               +.. 
T Consensus       141 r~~a~~~l~~~-----------~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (276)
T d1oyza_         141 RRATAFAISVI-----------NDKATIPLLIN-LLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEA  208 (276)
T ss_dssp             HHHHHHHHHTC--------------CCHHHHHH-HHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHHhhc-----------chHHHHHHHHH-hcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhh
Confidence            77676665533           23455666666 444444455555555554443332211               111 


Q ss_pred             ------HHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 015728          358 ------AICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLR  391 (401)
Q Consensus       358 ------~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~  391 (401)
                            +....+++.|+..++++   .+|..|.++|..+.
T Consensus       209 ~~al~~~~~~~~~~~L~~~l~d~---~vr~~a~~aL~~ig  245 (276)
T d1oyza_         209 IIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGELG  245 (276)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHTSS---SCCHHHHHHHHHHC
T ss_pred             ccccchhhhhhhHHHHHHHhCCh---HHHHHHHHHHHHcC
Confidence                  11244788888888654   47778888887765

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1e-05  Score=86.26  Aligned_cols=268  Identities=7%  Similarity=0.081  Sum_probs=165.3

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcc
Q 015728          106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLN  185 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~  185 (401)
                      +.+++.|..|+..|.+....+...-..=....+++.|+++|.+.+        ++||..|+. .|..+...-.+.  .+ 
T Consensus        14 ~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~--------~~Vq~~A~k-~l~~l~~~~~~~--~~-   81 (1207)
T d1u6gc_          14 SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN--------GEVQNLAVK-CLGPLVSKVKEY--QV-   81 (1207)
T ss_dssp             CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS--------HHHHHHHHH-HHHHHHTTSCHH--HH-
T ss_pred             CCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCC--------HHHHHHHHH-HHHHHHHhCcHh--hH-
Confidence            357889999999888877543211110011236889999997765        569999999 555554322111  11 


Q ss_pred             cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhh---hhhhhccchHHHHHHHHHc-c-CCchhHHHHHHHHHHh
Q 015728          186 EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE---LCCKLGKDDRLLREIISLV-H-HNSEASDAGVRAFSAL  260 (401)
Q Consensus       186 ~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~---~~~~i~~~~g~i~~Lv~lL-~-~~~~~~~~a~~aL~~L  260 (401)
                       ...++.|+..+.+++...+..+..+|..++........   ....+.  ..+++.|...+ + .+...+..|..+|..+
T Consensus        82 -~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          82 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence             13467777777777888888888888877443221000   111111  12334444444 2 2345788888888887


Q ss_pred             cCCCch-hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHHhCCCcHHHHHHHHHhcCChhHHHH
Q 015728          261 CSTETN-RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALINNPNGVYALVKMVFRVSDHEGSEN  339 (401)
Q Consensus       261 s~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~g~i~~Lv~~l~~~~~~~~~~~  339 (401)
                      ...-.. -... ...+++.|+..|.   +.+..++..|+.+|..|+..-..  ..  -...++.+++.+....+...+..
T Consensus       159 ~~~~g~~l~~~-~~~il~~l~~~l~---~~~~~vR~~A~~~l~~l~~~~~~--~~--~~~~~~~ll~~l~~~~~~~~~~~  230 (1207)
T d1u6gc_         159 LSRQGGLLVNF-HPSILTCLLPQLT---SPRLAVRKRTIIALGHLVMSCGN--IV--FVDLIEHLLSELSKNDSMSTTRT  230 (1207)
T ss_dssp             HHHTCSSCTTT-HHHHHHHHGGGGG---CSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTT
T ss_pred             HHHhhHhhHHH-HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHCCH--HH--HHHHHHHHHHHHccCCCHHHHHH
Confidence            642221 1110 1235666666666   56778999999999999864221  11  23567888886666555566777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhh
Q 015728          340 AINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEEL  398 (401)
Q Consensus       340 a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~  398 (401)
                      ++.++..++...+... .-.-...++.++..++++ ++..|+.+..++..+...+|+++
T Consensus       231 ~~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~  287 (1207)
T d1u6gc_         231 YIQCIAAISRQAGHRI-GEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEV  287 (1207)
T ss_dssp             HHHHHHHHHHHSSGGG-TTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHHcchhh-HHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhh
Confidence            8888888876543211 001245688888898887 88999999999999988776653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.1e-06  Score=63.51  Aligned_cols=44  Identities=11%  Similarity=0.283  Sum_probs=33.3

Q ss_pred             cccccccccccCC---ceEcCccccccHHhHHHHHHc----C---CCCCCCCcc
Q 015728           12 LFRCPISLDLFTD---PVTLCTGQTYDRSSIEKWLAA----G---NLTCPVTMQ   55 (401)
Q Consensus        12 ~~~C~iC~~~~~~---Pv~~~Cgh~fc~~Ci~~~~~~----~---~~~CP~c~~   55 (401)
                      ...|+||.+.+..   +..++|||.||..|+..|+..    +   ...||.|+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4579999997753   334589999999999999874    2   236998654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.0041  Score=62.46  Aligned_cols=283  Identities=11%  Similarity=0.062  Sum_probs=162.9

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ  170 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L  170 (401)
                      +....+.+.+.+.+++...+..++..|..++..-...  .+..  ...++.++..+.+.+..      .+++..++. .+
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~--~~~~~~~~il~~i~~~l~~~~~~------~~v~~~a~~-~l  198 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE--QLQDKSNEILTAIIQGMRKEEPS------NNVKLAATN-AL  198 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH--HHGGGHHHHHHHHHHHHSTTCSC------HHHHHHHHH-HH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHcCcCcc------HHHHHHHHH-HH
Confidence            5566666667666666777888899999888653321  2221  35688888888766543      567888887 44


Q ss_pred             Hhhc-CCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCch
Q 015728          171 KLLL-VGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNSE  248 (401)
Q Consensus       171 ~~l~-~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~  248 (401)
                      .... .............-.++.+...+.+++.+.+..+...|..++....  +.....+..  .+.+.+...+. ...+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~--~~~~~~~~~--~l~~~~~~~~~~~~~~  274 (876)
T d1qgra_         199 LNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGP--ALFAITIEAMKSDIDE  274 (876)
T ss_dssp             HHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG--GGCHHHHTT--THHHHHHHHHTCSSHH
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH--HHHHHHHHH--HHHHHHHHHhccccHH
Confidence            4333 2211111000011135556677778889999999999998833332  122222222  23344444443 4455


Q ss_pred             hHHHHHHHHHHhcCCCc---------------------hhHHHHhcCcHHHHHHHHHhh----ccccchHHHHHHHHHHH
Q 015728          249 ASDAGVRAFSALCSTET---------------------NRKTLVQEGAINGLIAYISNA----LTRERSLAAIAMARIEQ  303 (401)
Q Consensus       249 ~~~~a~~aL~~Ls~~~~---------------------n~~~iv~~G~v~~Lv~lL~~~----~~~~~~~~~~a~~~L~~  303 (401)
                      ....+...+..++....                     +-........+|.+...+...    ...+..++..|..+|..
T Consensus       275 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~  354 (876)
T d1qgra_         275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML  354 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHH
Confidence            67777766666653111                     111111223344444444311    01122466777777777


Q ss_pred             HhCCHhhHHHHHhCCCcHHHHHHH---HHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHH
Q 015728          304 LLAIENSKDALINNPNGVYALVKM---VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTK  380 (401)
Q Consensus       304 La~~~~~~~~~~~~~g~i~~Lv~~---l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~  380 (401)
                      ++.....        ..++.++..   .+.+.+...++.++.++..+..........-.-...++.++..++++ ++.+|
T Consensus       355 l~~~~~~--------~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr  425 (876)
T d1qgra_         355 LATCCED--------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVR  425 (876)
T ss_dssp             HHHHHGG--------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHH
T ss_pred             HHHHhhh--------hhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC-ccHHH
Confidence            7643211        223333332   35566777888888888887754322222333445678888888877 99999


Q ss_pred             HHHHHHHHHHHHhhHHh
Q 015728          381 TKARMLLKLLRSKWAEE  397 (401)
Q Consensus       381 ~~A~~~L~~l~~~~~e~  397 (401)
                      ..|.+++..+.+..++.
T Consensus       426 ~~a~~~l~~~~~~~~~~  442 (876)
T d1qgra_         426 DTAAWTVGRICELLPEA  442 (876)
T ss_dssp             HHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHcchh
Confidence            99999999999866654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.60  E-value=0.0001  Score=55.56  Aligned_cols=87  Identities=11%  Similarity=0.195  Sum_probs=71.1

Q ss_pred             CchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcCCCch
Q 015728          188 SKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCSTETN  266 (401)
Q Consensus       188 g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n  266 (401)
                      ..++.|+..|++++..+|..|+.+|.++ .             . .++++.|+.+| +.++.++..|+.+|..+.     
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~-~-------------~-~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~-----   81 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNF-Q-------------D-ERAVEPLIKLLEDDSGFVRSGAARSLEQIG-----   81 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGG-C-------------S-HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhc-c-------------h-hhhHHHHHhhhccchhHHHHHHHHHHHHhC-----
Confidence            4688999999999999999999888665 2             1 35789999999 567789999999998774     


Q ss_pred             hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHH
Q 015728          267 RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIE  302 (401)
Q Consensus       267 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~  302 (401)
                           ..++++.|..++.   +++..++..|+.+|.
T Consensus        82 -----~~~~~~~L~~ll~---d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 -----GERVRAAMEKLAE---TGTGFARKVAVNYLE  109 (111)
T ss_dssp             -----SHHHHHHHHHHTT---SCCTHHHHHHHHHGG
T ss_pred             -----ccchHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence                 2457889999998   688899999988764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.0012  Score=67.56  Aligned_cols=271  Identities=11%  Similarity=0.036  Sum_probs=150.9

Q ss_pred             cChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCc--hhhhhhc
Q 015728          107 ATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGE--TESLNLL  184 (401)
Q Consensus       107 ~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~--~~~~~~v  184 (401)
                      .++..|..|+..|..++......-.... ...+|.|+..+++.+        +.++..+++ ++..++..-  ......+
T Consensus       407 ~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~--------~~Vr~~a~~-~l~~~~~~~~~~~~~~~~  476 (888)
T d1qbkb_         407 HEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKK--------ALVRSITCW-TLSRYAHWVVSQPPDTYL  476 (888)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSC--------HHHHHHHHH-HHHHTHHHHHSSCHHHHT
T ss_pred             chhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCC--------HHHHHHHHH-HHHHHHHHhhhhhhhhhh
Confidence            4578888899999888765443211111 235788888887665        569999999 777665211  1111122


Q ss_pred             ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHccC-CchhHHHHHHHHHHhcC-
Q 015728          185 NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVHH-NSEASDAGVRAFSALCS-  262 (401)
Q Consensus       185 ~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~a~~aL~~Ls~-  262 (401)
                        ...++.++..+.+++..+++.|+.+|.++ ..... +.....+   ..+++.|+..+.. .......+..++..++. 
T Consensus       477 --~~~l~~ll~~l~d~~~~V~~~a~~al~~l-~~~~~-~~l~p~~---~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         477 --KPLMTELLKRILDSNKRVQEAACSAFATL-EEEAC-TELVPYL---AYILDTLVFAFSKYQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             --TTHHHHHHHHHSSSCHHHHHHHHHHHHHH-HHHHT-TSSGGGH---HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --hhhHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHhh-hhhhhHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence              35688888888889999999999999999 43210 1222222   3567778877743 33445555555555542 


Q ss_pred             --CCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCC-HhhHHHHHhCCCcHHHHHHHHH----------
Q 015728          263 --TETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAI-ENSKDALINNPNGVYALVKMVF----------  329 (401)
Q Consensus       263 --~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~-~~~~~~~~~~~g~i~~Lv~~l~----------  329 (401)
                        ..-++..+.+ -.+|.+++..... ..+.......+..|..++.. .........  ..++.+++.+.          
T Consensus       550 ~~~~~~~~~~~~-~l~~~l~~~~~~~-~~~~~~~~~~le~l~~i~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~  625 (888)
T d1qbkb_         550 VGHHLNKPEYIQ-MLMPPLIQKWNML-KDEDKDLFPLLECLSSVATALQSGFLPYCE--PVYQRCVNLVQKTLAQAMLNN  625 (888)
T ss_dssp             HGGGGCSHHHHH-HHHHHHHHHHTTS-CTTCTTHHHHHHHHHHHHHHSTTTTHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchHHHH-HHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHhHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHh
Confidence              2222333333 2566666665421 12222333445555554421 111111000  01111122110          


Q ss_pred             -h-----cCChhHHHHHHHHHHHHhcCCH-HHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhHHhhc
Q 015728          330 -R-----VSDHEGSENAINSLMMICCDSL-QAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWAEELK  399 (401)
Q Consensus       330 -~-----~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~e~~~  399 (401)
                       .     ..+......+..++..+...-+ .....+.....++.++..+++. ++.+|+.|..++.-+.++++.+++
T Consensus       626 ~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~~~~~~  701 (888)
T d1qbkb_         626 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVK  701 (888)
T ss_dssp             HCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhhhHHHH
Confidence             0     1122344455666666553222 2222333456677788888776 899999999999999988877653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00096  Score=68.43  Aligned_cols=284  Identities=10%  Similarity=0.058  Sum_probs=153.9

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCch-hhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPP-ASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      +..+...++  +.++..|..|++.|.+++..... ..... -...++.++..+.+..        +.+++.|++ ++..+
T Consensus       438 i~~l~~~l~--d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~--------~~V~~~a~~-al~~l  505 (888)
T d1qbkb_         438 IPHLIQCLS--DKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSN--------KRVQEAACS-AFATL  505 (888)
T ss_dssp             HHHHHHHTT--SSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSC--------HHHHHHHHH-HHHHH
T ss_pred             hHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCC--------HHHHHHHHH-HHHHH
Confidence            334444343  34677888888888887753221 11111 2456888888887765        459999999 78777


Q ss_pred             cCCchhh-hhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc---CCchh
Q 015728          174 LVGETES-LNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH---HNSEA  249 (401)
Q Consensus       174 ~~~~~~~-~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~  249 (401)
                      ....... ...+  ...++.++..++......+..+..++..+ .......-.+..+.  ...++.+...+.   .+...
T Consensus       506 ~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l-~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~  580 (888)
T d1qbkb_         506 EEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTL-ADSVGHHLNKPEYI--QMLMPPLIQKWNMLKDEDKD  580 (888)
T ss_dssp             HHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHH-HHHHGGGGCSHHHH--HHHHHHHHHHHTTSCTTCTT
T ss_pred             HHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHhhhccccchHHH--HHHHHHHHHHHHhcccchHH
Confidence            6221111 1111  23456666777777776666666677666 32110001111111  134455555552   23334


Q ss_pred             HHHHHHHHHHhcC-CCchhHHHHhcCcHHHHHHHHHh--------h------ccccchHHHHHHHHHHHHhCCH-hhHHH
Q 015728          250 SDAGVRAFSALCS-TETNRKTLVQEGAINGLIAYISN--------A------LTRERSLAAIAMARIEQLLAIE-NSKDA  313 (401)
Q Consensus       250 ~~~a~~aL~~Ls~-~~~n~~~iv~~G~v~~Lv~lL~~--------~------~~~~~~~~~~a~~~L~~La~~~-~~~~~  313 (401)
                      ......+|..+.. ..+......+ ..++.++.++..        .      ...+.+....++.++..+...- ..-..
T Consensus       581 ~~~~le~l~~i~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~  659 (888)
T d1qbkb_         581 LFPLLECLSSVATALQSGFLPYCE-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ  659 (888)
T ss_dssp             HHHHHHHHHHHHHHSTTTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4445556655542 1111111111 012222222210        0      0123455666777777776422 22233


Q ss_pred             HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728          314 LINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  393 (401)
                      ++.....++.+.. .+++.++.+++.|..++..|+...+..-.... ...++.|+.-+.++ ...++..|.+.+..+..+
T Consensus       660 ~~~~~~l~~~l~~-~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~  736 (888)
T d1qbkb_         660 LVARSNILTLMYQ-CMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPE-FISVCNNATWAIGEISIQ  736 (888)
T ss_dssp             HHHTSCHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhHHHHHHH-HhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHH
Confidence            3334456666777 56777788999999999888765432111111 12455666666555 778999999999999998


Q ss_pred             hHHhhc
Q 015728          394 WAEELK  399 (401)
Q Consensus       394 ~~e~~~  399 (401)
                      .+++++
T Consensus       737 ~~~~~~  742 (888)
T d1qbkb_         737 MGIEMQ  742 (888)
T ss_dssp             TGGGGG
T ss_pred             HHHHhh
Confidence            888765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.45  E-value=0.00016  Score=54.45  Aligned_cols=86  Identities=15%  Similarity=0.123  Sum_probs=69.1

Q ss_pred             HHHHHHHHc-cCCchhHHHHHHHHHHhcCCCchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH
Q 015728          235 LLREIISLV-HHNSEASDAGVRAFSALCSTETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA  313 (401)
Q Consensus       235 ~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~  313 (401)
                      .+++|+..| +++..++..|+++|.++..          .+++|.|+++|.   +.+..++..|+.+|..+.        
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~---d~~~~VR~~a~~aL~~i~--------   81 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLE---DDSGFVRSGAARSLEQIG--------   81 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHH---HCCTHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhc---cchhHHHHHHHHHHHHhC--------
Confidence            578899999 4567799999999876642          347899999999   688999999999998763        


Q ss_pred             HHhCCCcHHHHHHHHHhcCChhHHHHHHHHHH
Q 015728          314 LINNPNGVYALVKMVFRVSDHEGSENAINSLM  345 (401)
Q Consensus       314 ~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~  345 (401)
                         ..+.++.|.+ ++++.++.+++.|+.+|.
T Consensus        82 ---~~~~~~~L~~-ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 ---GERVRAAMEK-LAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             ---SHHHHHHHHH-HTTSCCTHHHHHHHHHGG
T ss_pred             ---ccchHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence               4456777877 678888899999988873

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.011  Score=58.82  Aligned_cols=261  Identities=10%  Similarity=0.078  Sum_probs=151.8

Q ss_pred             hcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhh-h---
Q 015728          106 EATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETES-L---  181 (401)
Q Consensus       106 ~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~-~---  181 (401)
                      +.+++.+.+|-..|..+...++        .|.+..|...+.+....      ..++..|+. +|.+........ .   
T Consensus        16 s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~------~~~r~~A~i-~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1          16 SPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTK------LEGRILAAL-TLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSC------HHHHHHHHH-HHHTTTCCSSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCC------HHHHHHHHH-HHHHHhhcccchhhhhH
Confidence            3467889999999988775532        23577788888765543      557777777 776654322110 0   


Q ss_pred             -----hhcc---cCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHcc-CCc-hhHH
Q 015728          182 -----NLLN---EESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLVH-HNS-EASD  251 (401)
Q Consensus       182 -----~~v~---~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL~-~~~-~~~~  251 (401)
                           ..+.   ....-..++..|.+++..+|..++.++..+ +..+- +++.     -...++.|+..+. ++. ..+.
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i-~~~~~-p~~~-----wpeli~~L~~~~~s~~~~~~~~  153 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAI-ADIEL-PHGA-----WPELMKIMVDNTGAEQPENVKR  153 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH-HHHHG-GGTC-----CHHHHHHHHHHTSTTSCHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHhC-CcCc-----hHHHHHHHHHHhcCCCcHHHHH
Confidence                 0110   011234556677788889999999999988 43210 0111     1357888888884 333 4777


Q ss_pred             HHHHHHHHhcCCCchhHHHHhcC---cHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHH-HHhCCCcHHHHHHH
Q 015728          252 AGVRAFSALCSTETNRKTLVQEG---AINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDA-LINNPNGVYALVKM  327 (401)
Q Consensus       252 ~a~~aL~~Ls~~~~n~~~iv~~G---~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~-~~~~~g~i~~Lv~~  327 (401)
                      .|+.+|..++..-++.....-..   .++.++..+.+. ..+..++..|+.++.++...-..... .......++.+.+ 
T Consensus       154 ~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-  231 (861)
T d2bpta1         154 ASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST-ETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCE-  231 (861)
T ss_dssp             HHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHH-
Confidence            88899999874333221111112   333444444311 34567888999999887753221110 0001123455556 


Q ss_pred             HHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHH-HHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          328 VFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQL-LLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       328 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L-~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .+...++..+..+..+|..++....+........ .+..+ ....++. .+..+..+..++..+.+
T Consensus       232 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         232 ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSP-NDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCS-SHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence            5677788889999999998876433211111111 23333 3333444 78899988888887766

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=0.0083  Score=56.01  Aligned_cols=226  Identities=13%  Similarity=0.109  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHhhcCCchhhhhhc--ccCCchHHHHHHhhc-----------------CCHHHHHHHHHHHHHHHhccc
Q 015728          160 QFVEESLSCVQKLLLVGETESLNLL--NEESKMESFIVLFEH-----------------GSCSIKKRLCHLVEVIISSSH  220 (401)
Q Consensus       160 ~~~~~a~~~~L~~l~~~~~~~~~~v--~~~g~i~~Lv~~L~~-----------------~~~~~~~~aa~~L~~l~s~~~  220 (401)
                      ..+.-++. .+..+... +..|..+  .+...+++|++.|+.                 ...+.+.++..+++.| |...
T Consensus       180 ~~~~i~v~-~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL-SF~~  256 (477)
T d1ho8a_         180 DTCYVCIR-LLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNP  256 (477)
T ss_dssp             HHHHHHHH-HHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSH
T ss_pred             chHHHHHH-HHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHH-HcCH
Confidence            35665666 44444433 3445554  233457777777643                 1246788999999999 8765


Q ss_pred             chhhhhhhhccc-hHHHHHHHHHcc--CCchhHHHHHHHHHHhcCCCc--h----hHHHHhcCcHHHHHHHHHhhccccc
Q 015728          221 ETKELCCKLGKD-DRLLREIISLVH--HNSEASDAGVRAFSALCSTET--N----RKTLVQEGAINGLIAYISNALTRER  291 (401)
Q Consensus       221 ~~~~~~~~i~~~-~g~i~~Lv~lL~--~~~~~~~~a~~aL~~Ls~~~~--n----~~~iv~~G~v~~Lv~lL~~~~~~~~  291 (401)
                         +....+... .+.|+.|+.+++  ....+.+-++.+|+|+.....  +    ...++..++. +++..|...+=.|+
T Consensus       257 ---~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~De  332 (477)
T d1ho8a_         257 ---VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDE  332 (477)
T ss_dssp             ---HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSH
T ss_pred             ---HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCH
Confidence               555555442 256899999994  445699999999999986432  2    3334555555 55677764333455


Q ss_pred             hHHHHHHHHHHHH-------hCCHhhHHHH----------------H-------hCC--CcHHHHHHHHHh---------
Q 015728          292 SLAAIAMARIEQL-------LAIENSKDAL----------------I-------NNP--NGVYALVKMVFR---------  330 (401)
Q Consensus       292 ~~~~~a~~~L~~L-------a~~~~~~~~~----------------~-------~~~--g~i~~Lv~~l~~---------  330 (401)
                      ++.+..-..-..|       +.-+++..++                .       .+.  ..+..|+++|.+         
T Consensus       333 dl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~  412 (477)
T d1ho8a_         333 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA  412 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccccccccc
Confidence            5554433222222       2222222222                1       111  257788884321         


Q ss_pred             cCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHh
Q 015728          331 VSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSK  393 (401)
Q Consensus       331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  393 (401)
                      +.++.+...|+.=+..++.+.++.|..+-+-|+=..++.||.++ ++.+|..|...+..+-.|
T Consensus       413 s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         413 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence            11333444455556778888888888888999999999999888 999999999998877653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0054  Score=56.39  Aligned_cols=271  Identities=10%  Similarity=0.054  Sum_probs=153.4

Q ss_pred             HHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhc
Q 015728           95 LSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLL  174 (401)
Q Consensus        95 ~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~  174 (401)
                      +..+.++++   .+.+.+.+|-..|..+...++        .+.+..|...+.+.+..      ..++..|+. +|.+.-
T Consensus         3 ~~il~~~~s---~d~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~~------~~~R~~A~i-~lk~~l   64 (458)
T d1ibrb_           3 ITILEKTVS---PDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNS------QVARVAAGL-QIKNSL   64 (458)
T ss_dssp             HHHHHHTTC---SCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSC------HHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHhC---cCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCCCC------HHHHHHHHH-HHHHHh
Confidence            445555553   567889999999998887542        12366777777665432      456666666 665444


Q ss_pred             CC-chhhhhh-------c---ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHHc
Q 015728          175 VG-ETESLNL-------L---NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISLV  243 (401)
Q Consensus       175 ~~-~~~~~~~-------v---~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~lL  243 (401)
                      .. .......       +   ........++..+.+.+.. +..++.++..+ ...    +....  .-.+.++.++..+
T Consensus        65 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i-~~~----~~~~~--~~~~~~~~l~~~l  136 (458)
T d1ibrb_          65 TSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGI-ACA----EIPVN--QWPELIPQLVANV  136 (458)
T ss_dssp             CCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHH-HHH----HGGGT--CCTTHHHHHHHHH
T ss_pred             hccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHH-HHH----hCCcc--cCcchhHHHHHHH
Confidence            22 2111111       0   0112234456666555443 33445555555 321    11111  1236789999988


Q ss_pred             -cC--CchhHHHHHHHHHHhcCC-CchhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHH--HHHhC
Q 015728          244 -HH--NSEASDAGVRAFSALCST-ETNRKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKD--ALINN  317 (401)
Q Consensus       244 -~~--~~~~~~~a~~aL~~Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~--~~~~~  317 (401)
                       ++  +...+..++.++..++.. ......-.-...++.++..+.+. +.+..++..|+.++..+........  ... .
T Consensus       137 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~-~  214 (458)
T d1ibrb_         137 TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE-EPSNNVKLAATNALLNSLEFTKANFDKESE-R  214 (458)
T ss_dssp             HCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHTTTTHHHHTSHHH-H
T ss_pred             HhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHHhhhhhhhhHHH-H
Confidence             32  334777888888887742 22222212234677788777631 2456788999999998876432211  111 1


Q ss_pred             CCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhhH
Q 015728          318 PNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRSKWA  395 (401)
Q Consensus       318 ~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  395 (401)
                      ....+.+.. ++.+.++..+..+..+|..++......-..-+.......+...+.+. .+..+..|...+..+.+...
T Consensus       215 ~~~~~~l~~-~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~  290 (458)
T d1ibrb_         215 HFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEM  290 (458)
T ss_dssp             HHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHhhHHH-HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHH
Confidence            123444555 56677788999999999998765432211122222333444455555 78888889888888876443

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.037  Score=54.91  Aligned_cols=283  Identities=11%  Similarity=0.077  Sum_probs=153.6

Q ss_pred             hhHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHh--cCChHHHHHHhccCCcccchhhhHHHHHHHHHHHH
Q 015728           93 DSLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQ--LGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQ  170 (401)
Q Consensus        93 ~~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L  170 (401)
                      +.+..+.+.+.+. ++...+..|+..|..++......-..+..  ...++.++..+.+....      ..++..++. .+
T Consensus       134 eli~~L~~~~~s~-~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~------~~v~~~a~~-~l  205 (861)
T d2bpta1         134 ELMKIMVDNTGAE-QPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETS------KAVRLAALN-AL  205 (861)
T ss_dssp             HHHHHHHHHTSTT-SCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCC------HHHHHHHHH-HH
T ss_pred             HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCC------HHHHHHHHH-HH
Confidence            3444444444322 34566778888998888665432222221  12334444444444432      568888888 55


Q ss_pred             HhhcCC-chhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHH-Hcc-CCc
Q 015728          171 KLLLVG-ETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIIS-LVH-HNS  247 (401)
Q Consensus       171 ~~l~~~-~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~-lL~-~~~  247 (401)
                      ..+... .............++.+...+++++.+.+..+...+..++.....  .....+.   ..+..+.. ..+ .+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~--~~~~~l~---~~l~~l~~~~~~~~~~  280 (861)
T d2bpta1         206 ADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT--FMKPYME---QALYALTIATMKSPND  280 (861)
T ss_dssp             HHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG--GCHHHHH---HTHHHHHHHHTTCSSH
T ss_pred             HHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHhcCccH
Confidence            444322 221111111123466777888889999999999999988332210  1111111   12333322 223 345


Q ss_pred             hhHHHHHHHHHHhcCCCchhH-----------------HHHhcCcHHHHHHHHHhhc----cccchHHHHHHHHHHHHhC
Q 015728          248 EASDAGVRAFSALCSTETNRK-----------------TLVQEGAINGLIAYISNAL----TRERSLAAIAMARIEQLLA  306 (401)
Q Consensus       248 ~~~~~a~~aL~~Ls~~~~n~~-----------------~iv~~G~v~~Lv~lL~~~~----~~~~~~~~~a~~~L~~La~  306 (401)
                      ..+..+...+..++.......                 .-.-...+|.+...+....    +.+......+..+|..++.
T Consensus       281 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  360 (861)
T d2bpta1         281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ  360 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHh
Confidence            688888887777653221110                 0011124555555554210    1122355566666666654


Q ss_pred             CHhhHHHHHhCCCcHHHHH---HHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHH
Q 015728          307 IENSKDALINNPNGVYALV---KMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKA  383 (401)
Q Consensus       307 ~~~~~~~~~~~~g~i~~Lv---~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A  383 (401)
                      ...+        ..++.+.   .......+...++.++.++..+..........-.-...++.++..+.++ ++.+|+.|
T Consensus       361 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~vr~~a  431 (861)
T d2bpta1         361 NCGN--------HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-SLQVKETT  431 (861)
T ss_dssp             HHGG--------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-CHHHHHHH
T ss_pred             hcch--------hhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCc-chhhhhHH
Confidence            3221        1223332   2234556777888899999888765432222223344678888888777 89999999


Q ss_pred             HHHHHHHHHhhHHh
Q 015728          384 RMLLKLLRSKWAEE  397 (401)
Q Consensus       384 ~~~L~~l~~~~~e~  397 (401)
                      .+++..+.+..+..
T Consensus       432 ~~~l~~l~~~~~~~  445 (861)
T d2bpta1         432 AWCIGRIADSVAES  445 (861)
T ss_dssp             HHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhchh
Confidence            99999998865543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.001  Score=70.24  Aligned_cols=235  Identities=9%  Similarity=0.086  Sum_probs=136.9

Q ss_pred             hHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 015728          139 LPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISS  218 (401)
Q Consensus       139 i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~  218 (401)
                      |..|+.-+.++|        ++++.-|+..++..|..+......-. ....++.|+..|+..+.++|..|+.+|..++..
T Consensus         5 ~~~ll~k~~~~D--------~d~R~ma~~dl~~~l~~~~~~~~~~~-~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~   75 (1207)
T d1u6gc_           5 ISNLLEKMTSSD--------KDFRFMATNDLMTELQKDSIKLDDDS-ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSK   75 (1207)
T ss_dssp             HHHHHHHTTCSS--------HHHHHHHHHHHHHHTSSSCCSCCTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCC--------HhHHHHHHHHHHHHHhhcccccChHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            455666677766        55888888745555542211000000 123578889999999999999999999999433


Q ss_pred             ccchhhhhhhhccchHHHHHHHHHc-cCCchhHHHHHHHHHHhcC-CC-chhHHHHhcCcHHHHHHHHHhh--ccccchH
Q 015728          219 SHETKELCCKLGKDDRLLREIISLV-HHNSEASDAGVRAFSALCS-TE-TNRKTLVQEGAINGLIAYISNA--LTRERSL  293 (401)
Q Consensus       219 ~~~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~a~~aL~~Ls~-~~-~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~~  293 (401)
                      ..      ....  ..+++.|+..+ +++...+..+..+|..+.. .+ .....-+....++.++..|.+.  ...+..+
T Consensus        76 ~~------~~~~--~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v  147 (1207)
T d1u6gc_          76 VK------EYQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV  147 (1207)
T ss_dssp             SC------HHHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred             Cc------HhhH--HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHH
Confidence            22      1121  25678888766 5666678888888876642 11 1111111112333344443321  1345667


Q ss_pred             HHHHHHHHHHHhCCHhhH-HHHHhCCCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhh
Q 015728          294 AAIAMARIEQLLAIENSK-DALINNPNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQ  372 (401)
Q Consensus       294 ~~~a~~~L~~La~~~~~~-~~~~~~~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~  372 (401)
                      +..|+.+|..+....... ...  ....++.|+. .+.+.+..+++.|+.+|..++...+..    .-...+..++..+.
T Consensus       148 ~~~al~~l~~l~~~~g~~l~~~--~~~il~~l~~-~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~  220 (1207)
T d1u6gc_         148 QLEALDIMADMLSRQGGLLVNF--HPSILTCLLP-QLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELS  220 (1207)
T ss_dssp             HHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGG-GGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHhhHHH--HHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHc
Confidence            888888888776421100 000  1123445555 356677789999999999998764321    12345777777666


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhhHHh
Q 015728          373 SQCSNRTKTKARMLLKLLRSKWAEE  397 (401)
Q Consensus       373 ~~~~~~~~~~A~~~L~~l~~~~~e~  397 (401)
                      .+.+...++.+..++..+.+..|..
T Consensus       221 ~~~~~~~~~~~~~~l~~l~~~~~~~  245 (1207)
T d1u6gc_         221 KNDSMSTTRTYIQCIAAISRQAGHR  245 (1207)
T ss_dssp             HTCSSCSCTTHHHHHHHHHHHSSGG
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcchh
Confidence            5546667777788888877755543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.012  Score=58.89  Aligned_cols=270  Identities=10%  Similarity=0.049  Sum_probs=156.0

Q ss_pred             hHHHHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhhhHHHhcCChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhh
Q 015728           94 SLSTLKHSLQSHEATLETKLQIVQKIHVVLRESPPASNCLIQLGFLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLL  173 (401)
Q Consensus        94 ~~~~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l  173 (401)
                      ....|..+++   .+.+.+.+|-..|..+...++        .|.+..|...+.+....      ..++..|+. +|.|.
T Consensus         3 l~~~L~~~~s---~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~------~~iR~~A~i-~lKn~   64 (876)
T d1qgra_           3 LITILEKTVS---PDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNS------QVARVAAGL-QIKNS   64 (876)
T ss_dssp             HHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSC------HHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHhC---cCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCC------HHHHHHHHH-HHHHH
Confidence            3455555553   567888889888888775532        23577778877665432      457777777 77654


Q ss_pred             cCC-chhhhh-------hc---ccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhhhhhhhccchHHHHHHHHH
Q 015728          174 LVG-ETESLN-------LL---NEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKELCCKLGKDDRLLREIISL  242 (401)
Q Consensus       174 ~~~-~~~~~~-------~v---~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~l  242 (401)
                      -.. +.....       .+   ........++..|.+++. .+..++.++..+ +..    ++..  ..-.++++.|+..
T Consensus        65 i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i-~~~----~~p~--~~Wpeli~~L~~~  136 (876)
T d1qgra_          65 LTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGI-ACA----EIPV--NQWPELIPQLVAN  136 (876)
T ss_dssp             HCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHH-HHH----HGGG--TCCTTHHHHHHHH
T ss_pred             hhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHH-HHH----HCCc--cccHHHHHHHHHH
Confidence            422 111110       01   011123456677766554 445577788777 432    1111  1113688999998


Q ss_pred             c-cCC--chhHHHHHHHHHHhcCCCch-hHHHHhcCcHHHHHHHHHhhccccchHHHHHHHHHHHHhCCHhhHHHHH-hC
Q 015728          243 V-HHN--SEASDAGVRAFSALCSTETN-RKTLVQEGAINGLIAYISNALTRERSLAAIAMARIEQLLAIENSKDALI-NN  317 (401)
Q Consensus       243 L-~~~--~~~~~~a~~aL~~Ls~~~~n-~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~-~~  317 (401)
                      + +++  ...+..++.+|..++..-.. ...-.-...++.++..+.+. +.+..++..|+.++.+............ ..
T Consensus       137 l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~  215 (876)
T d1qgra_         137 VTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE-EPSNNVKLAATNALLNSLEFTKANFDKESER  215 (876)
T ss_dssp             HHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTT-CSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCc-CccHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            8 333  34778889999988742221 11111134678888888631 3445788888888877664322111000 00


Q ss_pred             CCcHHHHHHHHHhcCChhHHHHHHHHHHHHhcCCHHHHHHHHHcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 015728          318 PNGVYALVKMVFRVSDHEGSENAINSLMMICCDSLQAREEAICAGVLTQLLLLLQSQCSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       318 ~g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~~A~~~L~~l~~  392 (401)
                      .-.+..+.. +....++..+..+..+|..++....+.....+.......+...+.+. .+..+..+...+..+.+
T Consensus       216 ~~i~~~l~~-~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         216 HFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence            112333444 56667778899999999998876543333334444555566666665 77777777777776665

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.049  Score=50.61  Aligned_cols=239  Identities=12%  Similarity=0.084  Sum_probs=149.1

Q ss_pred             ChHHHHHHhccCCcccchhhhHHHHHHHHHHHHHhhcCCchhhh---hhcc-cCC-chHHHHHHhhcCCHHHHHHHHHHH
Q 015728          138 FLPLLLKQLFGKAESKFSQVYVQFVEESLSCVQKLLLVGETESL---NLLN-EES-KMESFIVLFEHGSCSIKKRLCHLV  212 (401)
Q Consensus       138 ~i~~Lv~lL~s~~~~~~~~~~~~~~~~a~~~~L~~l~~~~~~~~---~~v~-~~g-~i~~Lv~~L~~~~~~~~~~aa~~L  212 (401)
                      ++..++.+|...+.       .++.++.+. ++.-|-.+++...   .... +.. .-+++...+.+++.-....+..++
T Consensus        75 ~~~~~l~lL~~~sk-------~d~vqyvL~-Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~  146 (477)
T d1ho8a_          75 TLIPLIHLLSTSDN-------EDCKKSVQN-LIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV  146 (477)
T ss_dssp             THHHHHHHHHSCCC-------HHHHHHHHH-HHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCc-------HHHHHHHHH-HHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHH
Confidence            68889999976553       567788888 7776654443211   1221 222 234445555555555666666677


Q ss_pred             HHHHhcccchhhhhhhhccchHHHHHHHHH---c-c-CCchhHHHHHHHHHHhcCCCchhHHHHh--cCcHHHHHHHHHh
Q 015728          213 EVIISSSHETKELCCKLGKDDRLLREIISL---V-H-HNSEASDAGVRAFSALCSTETNRKTLVQ--EGAINGLIAYISN  285 (401)
Q Consensus       213 ~~l~s~~~~~~~~~~~i~~~~g~i~~Lv~l---L-~-~~~~~~~~a~~aL~~Ls~~~~n~~~iv~--~G~v~~Lv~lL~~  285 (401)
                      ..+ +....  ..-.   .. +.++.+...   + . ++...+.-++.+|-.|...++.|..+..  ...+++|+++|..
T Consensus       147 ~ll-~~~~~--~~~~---~~-e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~  219 (477)
T d1ho8a_         147 SLL-VQNGL--HNVK---LV-EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQR  219 (477)
T ss_dssp             HHH-TSTTT--CCHH---HH-HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHH-Hhccc--cccc---hH-HHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHH
Confidence            777 54331  1111   11 223332332   2 2 4455777888899999999999998864  5579999999975


Q ss_pred             hcc--------------ccchHHHHHHHHHHHHhCCHhhHHHHHhCC-CcHHHHHHHHHhcCChhHHHHHHHHHHHHhcC
Q 015728          286 ALT--------------RERSLAAIAMARIEQLLAIENSKDALINNP-NGVYALVKMVFRVSDHEGSENAINSLMMICCD  350 (401)
Q Consensus       286 ~~~--------------~~~~~~~~a~~~L~~La~~~~~~~~~~~~~-g~i~~Lv~~l~~~~~~~~~~~a~~~L~~l~~~  350 (401)
                      ..+              .+.+++=.++-+++.|+-.++....+..+. +.|+.|++.+.....+++.+.++.+|.|++..
T Consensus       220 a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~  299 (477)
T d1ho8a_         220 ATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST  299 (477)
T ss_dssp             HHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSS
T ss_pred             HhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence            211              112456668889999999988888886332 56999999554556678999999999999865


Q ss_pred             CH-----HHHHHHHHcCcHHHHHHHhhcC--CCHHHHHHHHHHHHHHHH
Q 015728          351 SL-----QAREEAICAGVLTQLLLLLQSQ--CSNRTKTKARMLLKLLRS  392 (401)
Q Consensus       351 ~~-----~~~~~~~~~g~v~~L~~ll~~~--~~~~~~~~A~~~L~~l~~  392 (401)
                      ..     .....|+..++++.+ ..|+.+  .++...+--..+-..|.+
T Consensus       300 ~~~~~~~~~~~~~v~~~~l~~l-~~L~~r~~~Dedl~edl~~L~~~L~~  347 (477)
T d1ho8a_         300 RVKQHKKVIKQLLLLGNALPTV-QSLSERKYSDEELRQDISNLKEILEN  347 (477)
T ss_dssp             SSTTHHHHHHHHHHHHCHHHHH-HHHHSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHcchhHHH-HHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            22     245567777777654 555443  245555555554444444

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.16  Score=33.36  Aligned_cols=43  Identities=16%  Similarity=0.311  Sum_probs=32.7

Q ss_pred             CCcccccccccccCCceEcCc----cccccHHhHHHHHHc----CCCCCCC
Q 015728           10 PHLFRCPISLDLFTDPVTLCT----GQTYDRSSIEKWLAA----GNLTCPV   52 (401)
Q Consensus        10 ~~~~~C~iC~~~~~~Pv~~~C----gh~fc~~Ci~~~~~~----~~~~CP~   52 (401)
                      ...+.|.+|.+-+.|-....|    +|.||-.|-..+.++    +...||-
T Consensus         6 ~~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPS   56 (80)
T d2cs3a1           6 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS   56 (80)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred             CCceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCC
Confidence            345899999999998765544    699999999888775    3455665

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.80  E-value=0.023  Score=48.24  Aligned_cols=61  Identities=13%  Similarity=0.091  Sum_probs=29.4

Q ss_pred             HHHHHHcc-CCchhHHHHHHH-----HHHhcCCCc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHHHH
Q 015728          237 REIISLVH-HNSEASDAGVRA-----FSALCSTET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAMAR  300 (401)
Q Consensus       237 ~~Lv~lL~-~~~~~~~~a~~a-----L~~Ls~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~~~  300 (401)
                      +.|..++. ++..++..++..     |..|..+++  .|..++..-..+.|..++.   +.+..++..++..
T Consensus       117 ~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~---D~d~~VR~~aa~~  185 (233)
T d1lrva_         117 EQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQ---DPEPEVRRIVASR  185 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTT---CSSHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHcc---CCCHHHHHHHHHh
Confidence            34444553 344455555543     222332222  3444444444555666666   5666666666543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.32  E-value=5.9  Score=34.58  Aligned_cols=183  Identities=11%  Similarity=0.124  Sum_probs=106.8

Q ss_pred             HHHHhhhhhhcChHHHHHHHHHHHHHHhcCchhh-hHHHhcCChHHHHHHhccCC---cccchhhhHHHHHHHHHHHHHh
Q 015728           97 TLKHSLQSHEATLETKLQIVQKIHVVLRESPPAS-NCLIQLGFLPLLLKQLFGKA---ESKFSQVYVQFVEESLSCVQKL  172 (401)
Q Consensus        97 ~l~~~l~~~~~~~~~~~~a~~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~s~~---~~~~~~~~~~~~~~a~~~~L~~  172 (401)
                      ..++-|++. .+.+....-+..|+.-.+.++-.+ +.+ .++|+..|+.+|..-.   .......+...+.+++.|+-. 
T Consensus         6 ~yv~~l~~~-~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLka-   82 (343)
T d2bnxa1           6 MYIQELRSG-LRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA-   82 (343)
T ss_dssp             HHHHHHTSC-CCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhc-CCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH-
Confidence            344445443 223333445666666677777542 233 4667888888884211   000001235577788885544 


Q ss_pred             hcCCchhhhhhcccCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcccchhh-hh---------hhhccchHHHHHHHHH
Q 015728          173 LLVGETESLNLLNEESKMESFIVLFEHGSCSIKKRLCHLVEVIISSSHETKE-LC---------CKLGKDDRLLREIISL  242 (401)
Q Consensus       173 l~~~~~~~~~~v~~~g~i~~Lv~~L~~~~~~~~~~aa~~L~~l~s~~~~~~~-~~---------~~i~~~~g~i~~Lv~l  242 (401)
                      +.........++...+++..++..|.++...++..|..+|..+ +..+..++ ..         ...... +-..+++..
T Consensus        83 lmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~l-c~~~~~~~g~~~vL~Al~~~~~~~e~-~RF~~lv~~  160 (343)
T d2bnxa1          83 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSAL-CILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDG  160 (343)
T ss_dssp             HTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHH-HTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHH
T ss_pred             HhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence            4445556666777888999999999999999999999999888 54321111 11         112221 344678887


Q ss_pred             ccC--CchhHHHHHHHHHHhcCCCc-------hhHHHHhcCcHHHHHHHHHh
Q 015728          243 VHH--NSEASDAGVRAFSALCSTET-------NRKTLVQEGAINGLIAYISN  285 (401)
Q Consensus       243 L~~--~~~~~~~a~~aL~~Ls~~~~-------n~~~iv~~G~v~~Lv~lL~~  285 (401)
                      |+.  +.+.+..+...+-.|....+       -|..+...|.. .+++-|..
T Consensus       161 l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~-~il~~l~~  211 (343)
T d2bnxa1         161 LKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH-QVLQELRE  211 (343)
T ss_dssp             TSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH-HHHHHHTT
T ss_pred             HhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChH-HHHHHHHc
Confidence            843  33455555555555654433       25566667655 45666664

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.17  E-value=0.26  Score=33.59  Aligned_cols=49  Identities=20%  Similarity=0.146  Sum_probs=37.1

Q ss_pred             CcccccccccccC-----CceEc--CccccccHHhHHHHHHcCCCCCCCCcccCCC
Q 015728           11 HLFRCPISLDLFT-----DPVTL--CTGQTYDRSSIEKWLAAGNLTCPVTMQTLHD   59 (401)
Q Consensus        11 ~~~~C~iC~~~~~-----~Pv~~--~Cgh~fc~~Ci~~~~~~~~~~CP~c~~~~~~   59 (401)
                      ..-.|.||.+-.-     +|...  .|+--.|+.|++=-.+.+...||.|+..+..
T Consensus        15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr   70 (93)
T d1weoa_          15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             ccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence            3568999998552     34333  4888899999986677788999999987754

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.33  E-value=0.12  Score=43.50  Aligned_cols=58  Identities=9%  Similarity=0.023  Sum_probs=27.0

Q ss_pred             HHHHHHcc-CCchhHHHHHHHH-----HHhcCCCc--hhHHHHhcCcHHHHHHHHHhhccccchHHHHHH
Q 015728          237 REIISLVH-HNSEASDAGVRAF-----SALCSTET--NRKTLVQEGAINGLIAYISNALTRERSLAAIAM  298 (401)
Q Consensus       237 ~~Lv~lL~-~~~~~~~~a~~aL-----~~Ls~~~~--n~~~iv~~G~v~~Lv~lL~~~~~~~~~~~~~a~  298 (401)
                      +.|..+++ .+..++..++..|     ..|..+++  .|..+++. +.+.+++.|.   +++..+++.|+
T Consensus       165 ~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~---D~d~~VR~aA~  230 (233)
T d1lrva_         165 ESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELD---EPDPEVRLAIA  230 (233)
T ss_dssp             GGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCC---CCCHHHHHHHH
T ss_pred             HHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhC---CCCHHHHHHHH
Confidence            34444453 3444666665442     23333222  34444443 2344555565   55666666554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.87  E-value=0.24  Score=26.17  Aligned_cols=12  Identities=25%  Similarity=0.595  Sum_probs=7.6

Q ss_pred             cccccccccccC
Q 015728           12 LFRCPISLDLFT   23 (401)
Q Consensus        12 ~~~C~iC~~~~~   23 (401)
                      .|.||||++-|+
T Consensus         3 p~~cpic~qrfk   14 (32)
T d2epqa1           3 PYSCPVCGLRFK   14 (32)
T ss_dssp             SSEETTTTEECS
T ss_pred             CcccchHHHHhh
Confidence            456777766665