Citrus Sinensis ID: 015765

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
Protein Sequence
MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALPRQ
Secondary Structure (PSIPRED)
cccHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEEEEEEccc
Coil and Loop (DISEMBL)
MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKsesnpfrildiccgaslapespldRMAFSIAVSKLSQANHFNAISQLLEELktrpdlrqnerFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEfpkvygiepnsetYNKVIKSFCESGDSSSVYSILAEMRRksirpnatdFGLLLAGFYKEHKYEDVGKVLQMMEKCgiasgvnvYNIRIQSLCKLKRSEEAKALLDGMlsrgikpnldtyKHLIHGFGKEGNLEGAKKLFASmtnggcepdsycfFMFTYFLCQGGEYETALKVCRASmakgwvphfsTMKSLVTGLASISKVAEANELIGLMkkrfpksgdmwnaalprq
Flexible Loop (DISEMBL)
MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATiarlksesnpfriLDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEfpkvygiepnSETYNKVIKSFCESGDSSSVYSILAEMrrksirpnaTDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLmkkrfpksgdmwnaalprq
Low Complexity Region (SEG)
MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALPRQ
Disordered region (IsUnstruct)
**LLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKE**RATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK****************
Disordered Region (DISOPRED)
MALLYR*RTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALPRQ
Disordered Region (DISEMBL)
MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALPRQ
Disordered Region (DISPRO)
MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALPR*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALPRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	401	2.2.26 [Sep-21-2011]
Q8LE47	408	Pentatricopeptide repeat-	yes	no	0.995	0.977	0.540	1e-125
Q9SAB4	405	Pentatricopeptide repeat-	no	no	0.987	0.977	0.506	1e-108
Q9M065	412	Pentatricopeptide repeat-	no	no	0.847	0.825	0.337	2e-49
Q9ZU67	418	Pentatricopeptide repeat-	no	no	0.837	0.803	0.316	7e-43
Q8GW57	397	Pentatricopeptide repeat-	no	no	0.872	0.881	0.284	5e-42
Q9LK57	394	Pentatricopeptide repeat-	no	no	0.930	0.946	0.278	8e-41
Q9LK58	551	Pentatricopeptide repeat-	no	no	0.753	0.548	0.287	1e-39
Q9LG23	398	Pentatricopeptide repeat-	no	no	0.935	0.942	0.267	6e-39
Q8LDU5	466	Pentatricopeptide repeat-	no	no	0.867	0.746	0.265	1e-32
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.788	0.419	0.269	1e-28

>sp|Q8LE47|PPR87_ARATH Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/409 (54%), Positives = 306/409 (74%), Gaps = 10/409 (2%)

Query: 1   MALLYRLRTNFNL-----KTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNP 55
           MALL R+R++ +L      +   R+L+++S + + D    LT KEK +A ++ LKSE +P
Sbjct: 1   MALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDP 60

Query: 56  FRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFH 114
            RIL+IC  ASL P+  +DR+AFS AV  L++  HF+A+S LL+  ++ RPDL+ +ERF 
Sbjct: 61  DRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLK-SERFA 119

Query: 115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174
            H+IVLY QANM+DH+++ F +++K+ + ++V +LNALL  C+++K+Y+E KR++ E PK
Sbjct: 120 AHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 179

Query: 175 VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE 234
           +YGIEP+ ETYN++IK FCESG +SS YSI+AEM RK I+PN++ FGL+++GFY E K +
Sbjct: 180 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSD 239

Query: 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294
           +VGKVL MM+  G+  GV+ YNIRIQSLCK K+S+EAKALLDGMLS G+KPN  TY HLI
Sbjct: 240 EVGKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLI 299

Query: 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354
           HGF  E + E AKKLF  M N GC+PDS C+F   Y+LC+GG++ETAL +C+ SM K WV
Sbjct: 300 HGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWV 359

Query: 355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
           P FS MKSLV GLA  SKV EA ELIG +K++F ++ ++WN   AALP+
Sbjct: 360 PSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408

May be involved in translation through its association with polysomes. Could bind RNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1 SV=1

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/405 (50%), Positives = 290/405 (71%), Gaps = 9/405 (2%)

Query: 1   MALLYRLRTN-FNLKTVNYRNLATSSLLSAGDEAAALTIKEKK-RATIARLKSESNPFRI 58
           MA L+R+RT+ F L+      L +SS  S+     +LT K+KK R T++ LKSE+NP RI
Sbjct: 1   MAFLFRIRTSEFILQKATQFRLKSSS--SSIFTLKSLTSKQKKSRDTLSLLKSENNPDRI 58

Query: 59  LDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFHVHS 117
           L+IC   SL+P+  +DR+ FS+AV  L++  HF A+SQLL+  ++ +PD  ++E F V +
Sbjct: 59  LEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPD-PKSESFAVRA 117

Query: 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG 177
           I+LYG+ANM+D ++QTF  +++Y + ++V +LNALL  C+++K+Y+E  R++ E PK+YG
Sbjct: 118 IILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYG 177

Query: 178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
           IEP+ ETYN++I+  CESG +SS YSI+AEM RK I+P A  FGL++ GFYKE K+++V 
Sbjct: 178 IEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVR 237

Query: 238 KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
           KV++MM++ G+  GV  YNI IQ LCK K+S EAKAL+DG++S  ++PN  TY  LIHGF
Sbjct: 238 KVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGF 297

Query: 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
             E NL+ A  LF  M   G +PDS C+F   + LC+GG++ETAL +CR SM K WVP F
Sbjct: 298 CSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSF 357

Query: 358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALP 399
           S MK LV GLAS SKV EA ELI ++K++F ++ D+WN   AALP
Sbjct: 358 SVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 185/344 (53%), Gaps = 4/344 (1%)

Query: 49  LKSESNPFRILDICCGASLAPESPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRPDL 107
           L+ E +P + L I    S    SP+  R A  + V +L++   F+ I  L+E  K  P +
Sbjct: 40  LRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKI 99

Query: 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKR 167
           ++ E F+   I  YGQA+M +HAM+TFE+MD+YG  +S  + NALL  C+ SKN+++V +
Sbjct: 100 KE-EPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQ 158

Query: 168 IFTEFPKVYG-IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG 226
           +F E P+ Y  I P+  +Y  +IKS+C+SG       I+ +M+ K +      F  +L+ 
Sbjct: 159 LFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSS 218

Query: 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286
            YK+ + E    +   M K G       YN+RI S  K +  E  K L++ M S G+KP+
Sbjct: 219 LYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQK-ESPERVKELIEEMSSMGLKPD 277

Query: 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346
             +Y +L+  + + G L+ AKK++  +    C P++  F    + LC    YE    + +
Sbjct: 278 TISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFK 337

Query: 347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390
            S+    +P F+T+K LV GL    K  +A  LI  +KK+FP S
Sbjct: 338 KSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPS 381

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1

 Score =  175 bits (443), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 8/344 (2%)

Query: 47  ARLKSESNPFRILDICCGASLAPESPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRP 105
           ++L+   +P + L I    S    SPL  R A  + V +L+++  F+ I  L+E  K  P
Sbjct: 38  SKLRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNP 97

Query: 106 DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165
            ++  E F    I  YG+A+M DHAM+ FEEMDK G  ++V + NALL  C+ S  +E V
Sbjct: 98  KIK-TETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERV 156

Query: 166 KRIFTEFPKVY-GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLL 224
            ++F EFP+ Y  I P+  +Y  +IKS+C+SG       I+ +M  K +      F  +L
Sbjct: 157 PQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTIL 216

Query: 225 AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK 284
              YK    ++   +   M   G      VYN+R+ +  K +  E  K L++ M S G+K
Sbjct: 217 GSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAAK-ESPERVKELMEEMSSVGLK 275

Query: 285 PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKV 344
           P+  +Y +L+  +  +G +  AKK++     G  +P++  F    + LC  G Y+  L V
Sbjct: 276 PDTVSYNYLMTAYCVKGMMSEAKKVY----EGLEQPNAATFRTLIFHLCINGLYDQGLTV 331

Query: 345 CRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388
            + S     +P F T K L  GL   +++ +A  +  ++KK+FP
Sbjct: 332 FKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFP 375

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW57|PP134_ARATH Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2 SV=2

 Score =  172 bits (435), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 177/351 (50%), Gaps = 1/351 (0%)

Query: 38  IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQL 97
           +K  +   + +LKSE +P ++ ++    +       +R AF   VS+L+ A   + I  L
Sbjct: 34  LKPLEEPALVKLKSERDPEKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDL 93

Query: 98  LEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI 157
           LE  KT P  R+ E F V  I+LYG+A M   A+ TF  MD YG ++SV + NA L    
Sbjct: 94  LEHQKTLPQGRR-EGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLS 152

Query: 158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA 217
            + +   +     + P  YGI+ ++ ++N  IKSFCE G     Y  + EM +  + P+ 
Sbjct: 153 FNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDV 212

Query: 218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG 277
             +  L++  YK  +      +  +M   G    +  +N+RIQ L   +R+ +A  LL  
Sbjct: 213 VTYTTLISALYKHERCVIGNGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLL 272

Query: 278 MLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE 337
           M    ++P+  TY  +I GF      + A++++ +M   G +P+   +    ++LC+ G 
Sbjct: 273 MPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGN 332

Query: 338 YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388
           ++ A  +C+  M K W P+  T++ L+ GL    ++ +A  ++ L+ +R P
Sbjct: 333 FDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIMELVHRRVP 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1

 Score =  168 bits (425), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 185/380 (48%), Gaps = 7/380 (1%)

Query: 5   YRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCG 64
           + LR NF+  T   R   ++        AAA T    K + I  +  E +P  I +    
Sbjct: 7   FLLRGNFSFSTHTNRRFFSAVT------AAAATPSPPKPSLITLVNDERDPKFITEKFKK 60

Query: 65  ASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA 124
           A  A     +   +   V +L+ A  F  + ++LEE    P++ + E F    I LYG+ 
Sbjct: 61  ACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSK-EGFVARIINLYGRV 119

Query: 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET 184
            M ++A + F+EM +   +++  + NALL  C+ SK ++ V+ IF E P    IEP+  +
Sbjct: 120 GMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVAS 179

Query: 185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244
           YN +IK  C  G  +   +++ E+  K ++P+   F +LL   Y + K+E+  ++   M 
Sbjct: 180 YNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMV 239

Query: 245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304
           +  +   +  YN R+  L    +SEE  +L D +    +KP++ T+  +I GF  EG L+
Sbjct: 240 EKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLD 299

Query: 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364
            A   +  +   GC P  + F      +C+ G+ E+A ++C+   AK  +   + ++ +V
Sbjct: 300 EAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVV 359

Query: 365 TGLASISKVAEANELIGLMK 384
             L   SK  EA E++ L K
Sbjct: 360 DALVKGSKQDEAEEIVELAK 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 157/303 (51%), Gaps = 1/303 (0%)

Query: 78  FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEM 137
           +S  + +L +A  F+ I ++L+  K   D++ +E F +  ++LYG + M +HA + F+EM
Sbjct: 90  YSAFIRRLREAKKFSTIDEVLQYQKKFDDIK-SEDFVIRIMLLYGYSGMAEHAHKLFDEM 148

Query: 138 DKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197
            +    ++V + NALL   + SK  +E  + F E P+  GI P+  TYN +IK+ C  G 
Sbjct: 149 PELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGS 208

Query: 198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNI 257
              + SI  E+ +    P+   F  LL  FY+   + +  ++  +M+   ++  +  YN 
Sbjct: 209 MDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNS 268

Query: 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG 317
           R++ L + K+  +A  L+D M + GI P++ TY  LI  +  + NLE   K +  M   G
Sbjct: 269 RVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKG 328

Query: 318 CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377
             PD+  + M    LC+ G+ + A++V   ++    +   +  K +V  L    K+ EA 
Sbjct: 329 LTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEAT 388

Query: 378 ELI 380
           +L+
Sbjct: 389 QLV 391

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1

 Score =  161 bits (408), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 190/378 (50%), Gaps = 3/378 (0%)

Query: 7   LRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGAS 66
           LR  FN  T   R  ++++ + +   A    I   +++  + +  E NP RI++    A 
Sbjct: 8   LRGTFN--TCPIRRFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKAC 65

Query: 67  LAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126
            +     +   +   V +L  A   + + ++LEE K   D+ + E F    I LYG+A M
Sbjct: 66  ESERFRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSK-EGFAARIISLYGKAGM 124

Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
            ++A + FEEM     ++SV + NALL    LSK ++ V+ +F E P    I+P+  +YN
Sbjct: 125 FENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYN 184

Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
            +IK+ CE        ++L E+  K ++P+   F  LL   Y + ++E   ++   M + 
Sbjct: 185 TLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEK 244

Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
            +A  +  YN R+  L    +S+E   L   + + G+KP++ ++  +I G   EG ++ A
Sbjct: 245 NVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEA 304

Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
           +  +  +   G  PD   F +    +C+ G++E+A+++ + + +K ++   +T++ LV  
Sbjct: 305 EAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDE 364

Query: 367 LASISKVAEANELIGLMK 384
           L   SK  EA E++ + K
Sbjct: 365 LVKGSKREEAEEIVKIAK 382

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 167/354 (47%), Gaps = 6/354 (1%)

Query: 49  LKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLR 108
           + S+S+P    +I   AS  P     R +  I + KL +  +FN I  +L + ++     
Sbjct: 58  IASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPL 117

Query: 109 QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRI 168
             E F  + I +Y +A + +  + TF +M ++        LN +L   +  + Y  +++ 
Sbjct: 118 TGEIF-TYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGY--LQKA 174

Query: 169 FTEF--PKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG 226
           F  F   +++G+ PN+ +YN ++++FC + D S  Y +  +M  + + P+   + +L+ G
Sbjct: 175 FELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQG 234

Query: 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286
           F ++ +     ++L  M   G       Y   + SLC+  +  EA  LL  M  +G  P+
Sbjct: 235 FCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPD 294

Query: 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346
           L  Y  +I GF +E     A+K+   M + GC P+S  +      LC  G ++   K   
Sbjct: 295 LVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLE 354

Query: 347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIG-LMKKRFPKSGDMWNAALP 399
             ++KG+ PHFS    LV G  S  KV EA +++  +MK       D W   +P
Sbjct: 355 EMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIP 408

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 146/326 (44%), Gaps = 10/326 (3%)

Query: 56  FRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHV 115
             I+D+       P    D   ++  +S L +        ++L+++ TR D   N   + 
Sbjct: 315 IEIMDVMLQEGYDP----DVYTYNSVISGLCKLGEVKEAVEVLDQMITR-DCSPNTVTYN 369

Query: 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV 175
             I    + N ++ A +    +   G+   V   N+L+ G  L++N+     +F E  + 
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM-RS 428

Query: 176 YGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED 235
            G EP+  TYN +I S C  G      ++L +M       +   +  L+ GF K +K  +
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488

Query: 236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295
             ++   ME  G++     YN  I  LCK +R E+A  L+D M+  G KP+  TY  L+ 
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548

Query: 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG--W 353
            F + G+++ A  +  +MT+ GCEPD   +      LC+ G  E A K+ R+   KG   
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608

Query: 354 VPHFSTMKSLVTGLASISKVAEANEL 379
            PH      ++ GL    K  EA  L
Sbjct: 609 TPH--AYNPVIQGLFRKRKTTEAINL 632

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
449454724	405	PREDICTED: pentatricopeptide repeat-cont	0.995	0.985	0.603	1e-133
147767812	396	hypothetical protein VITISV_027645 [Viti	0.980	0.992	0.595	1e-128
359494840	396	PREDICTED: pentatricopeptide repeat-cont	0.980	0.992	0.595	1e-128
18407365	408	pentatricopeptide repeat-containing prot	0.995	0.977	0.540	1e-123
255554937	397	pentatricopeptide repeat-containing prot	0.967	0.977	0.572	1e-123
297837243	408	pentatricopeptide repeat-containing prot	0.995	0.977	0.535	1e-120
21553755	407	putative membrane-associated salt-induci	0.995	0.980	0.539	1e-117
356555650	388	PREDICTED: pentatricopeptide repeat-cont	0.942	0.974	0.558	1e-117
297849542	403	pentatricopeptide repeat-containing prot	0.990	0.985	0.507	1e-111
15221069	405	pentatricopeptide repeat-containing prot	0.987	0.977	0.506	1e-106

>gi|449454724|ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis sativus] gi|449471723|ref|XP_004153390.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis sativus] gi|449530564|ref|XP_004172264.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis sativus]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/406 (60%), Positives = 309/406 (76%), Gaps = 7/406 (1%)

Query: 1   MALLYRLRTNF--NLKTVNYR-NLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFR 57
           MALLYRLR+ F  N   +NYR +  + S + + D +  L+ K+K RA ++ LK+E NP R
Sbjct: 1   MALLYRLRSAFPSNSTYINYRLHYRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPER 60

Query: 58  ILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS 117
           I+DIC  ASL PE  LDR+AFS+A+SKLS+  HF+ I + LEELK+RPDL+ NERF  H+
Sbjct: 61  IIDICRAASLTPEFHLDRIAFSVAISKLSKFKHFDGIRRFLEELKSRPDLK-NERFACHA 119

Query: 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG 177
           IVLYGQANM+DHA++TF+++D+ G+R SV  LNALL  C L+K+Y+E+KR++ EFPK+YG
Sbjct: 120 IVLYGQANMLDHAIRTFKQIDELGVRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYG 179

Query: 178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
           IEP+ +TYN+VIK+F ESG SSSV SI+AEM RK ++PNAT F   LAG Y E K+EDV 
Sbjct: 180 IEPDIDTYNRVIKAFSESGSSSSVSSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVE 239

Query: 238 KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
           KVL +MEK G+  GV  YN RI+SLCKLKRS EAKAL DGMLSRG+ PN  TY  LIHGF
Sbjct: 240 KVLNLMEKYGVRRGVATYNARIRSLCKLKRSTEAKALFDGMLSRGMDPNSVTYCELIHGF 299

Query: 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
            KEGNL+ AK +F  M N GC+PDS C+F  TYFLC+GG+YETA K+C  SM KGWVP+F
Sbjct: 300 CKEGNLDEAKSIFKRMINSGCQPDSECYFTLTYFLCRGGDYETAFKICLESMKKGWVPNF 359

Query: 358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
           STMKSLV GL SISKV EA +LIG +K+RF K+ + W+   A LP+
Sbjct: 360 STMKSLVDGLVSISKVEEAKQLIGQIKERFSKNVEKWSEIEAGLPQ 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767812|emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/403 (59%), Positives = 303/403 (75%), Gaps = 10/403 (2%)

Query: 1   MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILD 60
           MA L RLR        ++R    SS+LS  D A  L+ KEK RA ++ LKSE +P RIL+
Sbjct: 1   MAFLSRLRP-----ISSHRCRFFSSILSP-DSATPLSSKEKSRAALSLLKSEQDPQRILE 54

Query: 61  ICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120
           IC  A+L PES LDR+AFS+A+SKL+ + HF++I   L+ELK RPDLR  ERF  H+IVL
Sbjct: 55  ICRAAALTPESHLDRVAFSVAISKLADSKHFDSIRHFLDELKARPDLR-TERFVSHAIVL 113

Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
           +GQA M++ A++TFE+M + G+ ++V +LNALL  CIL+KNY+E  RIF EFPK YGIE 
Sbjct: 114 FGQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIEL 173

Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
           N ++YN V+K+F ESG SSS YSILAEM RK ++PNAT FG+LLAGFY E KYEDVGKVL
Sbjct: 174 NLDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVL 233

Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
           +MME+  +  G++ YNIRIQSLCKLK+S EAKALLDG+L+R +KPN +TY HLIHGF KE
Sbjct: 234 KMMEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCKE 293

Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
           GNL+ AKKLF  M N GC+PDS C+F   YFLCQGG++E+AL+ C+  M KGW P+ STM
Sbjct: 294 GNLDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTM 353

Query: 361 KSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
            SLV GL SISKV EA ELIG +K++F ++ D WN   A LP+
Sbjct: 354 TSLVNGLVSISKVEEAQELIGQIKEKFSRNVDKWNEIEAGLPQ 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494840|ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Vitis vinifera]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/403 (59%), Positives = 303/403 (75%), Gaps = 10/403 (2%)

Query: 1   MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILD 60
           MA L RLR        ++R    SS+LS  D A  L+ KEK RA ++ LKSE +P RIL+
Sbjct: 1   MAFLSRLRP-----ISSHRCRFFSSILSP-DSATPLSSKEKSRAALSLLKSEQDPQRILE 54

Query: 61  ICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120
           IC  A+L PES LDR+AFS+A+SKL+ + HF++I   L+ELK RPDLR  ERF  H+IVL
Sbjct: 55  ICRAAALTPESHLDRVAFSVAISKLADSKHFDSIRHFLDELKARPDLR-TERFVSHAIVL 113

Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
           +GQA M++ A++TFE+M + G+ ++V +LNALL  CIL+KNY+E  RIF EFPK YGIE 
Sbjct: 114 FGQAGMLNDAVRTFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIEL 173

Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
           N ++YN V+K+F ESG SSS YSILAEM RK ++PNAT FG+LLAGFY E KYEDVGKVL
Sbjct: 174 NLDSYNTVLKAFSESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVL 233

Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
           +MME+  +  G++ YNIRIQSLCKLK+S EAKALLDG+L+R +KPN +TY HLIHGF KE
Sbjct: 234 KMMEEYKMQPGISTYNIRIQSLCKLKKSSEAKALLDGILARRMKPNSETYCHLIHGFCKE 293

Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
           GNL+ AKKLF  M N GC+PDS C+F   YFLCQGG++E+AL+ C+  M KGW P+ STM
Sbjct: 294 GNLDEAKKLFKDMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTM 353

Query: 361 KSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
            SLV GL SISKV EA ELIG +K++F ++ D WN   A LP+
Sbjct: 354 TSLVNGLVSISKVEEARELIGQIKEKFSRNVDKWNEIEAGLPQ 396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407365|ref|NP_564786.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806489|sp|Q8LE47.2|PPR87_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g61870, mitochondrial; AltName: Full=Protein PENTATRICOPEPTIDE REPEAT 336; Flags: Precursor gi|16226403|gb|AAL16159.1|AF428391_1 At1g61870/F8K4_8 [Arabidopsis thaliana] gi|3367521|gb|AAC28506.1| Similar to gb|U08285 membrane-associated salt-inducible protein from Nicotiana tabacum. ESTs gb|T44131 and gb|T04378 come from this gene [Arabidopsis thaliana] gi|17065564|gb|AAL32936.1| Unknown protein [Arabidopsis thaliana] gi|32815835|gb|AAP88326.1| At1g61870 [Arabidopsis thaliana] gi|332195777|gb|AEE33898.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/409 (54%), Positives = 306/409 (74%), Gaps = 10/409 (2%)

Query: 1   MALLYRLRTNFNL-----KTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNP 55
           MALL R+R++ +L      +   R+L+++S + + D    LT KEK +A ++ LKSE +P
Sbjct: 1   MALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDP 60

Query: 56  FRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFH 114
            RIL+IC  ASL P+  +DR+AFS AV  L++  HF+A+S LL+  ++ RPDL+ +ERF 
Sbjct: 61  DRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLK-SERFA 119

Query: 115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174
            H+IVLY QANM+DH+++ F +++K+ + ++V +LNALL  C+++K+Y+E KR++ E PK
Sbjct: 120 AHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 179

Query: 175 VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE 234
           +YGIEP+ ETYN++IK FCESG +SS YSI+AEM RK I+PN++ FGL+++GFY E K +
Sbjct: 180 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSD 239

Query: 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294
           +VGKVL MM+  G+  GV+ YNIRIQSLCK K+S+EAKALLDGMLS G+KPN  TY HLI
Sbjct: 240 EVGKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLI 299

Query: 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354
           HGF  E + E AKKLF  M N GC+PDS C+F   Y+LC+GG++ETAL +C+ SM K WV
Sbjct: 300 HGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWV 359

Query: 355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
           P FS MKSLV GLA  SKV EA ELIG +K++F ++ ++WN   AALP+
Sbjct: 360 PSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554937|ref|XP_002518506.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223542351|gb|EEF43893.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/409 (57%), Positives = 298/409 (72%), Gaps = 21/409 (5%)

Query: 1   MALLYRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILD 60
           MAL +RLR +  +K    R  +T+ L S          KE+ RA I+ LKSE NP +I++
Sbjct: 1   MALFFRLRIHSLIKV--RREFSTTPLSS----------KERTRAAISLLKSEENPQKIIE 48

Query: 61  ICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIV 119
           IC  ASL PE+ LDR+AFS+A++KLS++N+F+ I Q L++L+ +RPDLR +ERF  H+IV
Sbjct: 49  ICNSASLTPEAHLDRIAFSVAITKLSKSNNFSFIQQFLDDLRVSRPDLRTSERFAAHAIV 108

Query: 120 LYGQANMIDHAMQTFEE--MDKYGL--RQSVDALNALLLGCILSKNYEEVKRIFTEFPKV 175
           L+GQA M+DHA++TF+E   D  GL    SV   NALL  C L+K+Y EVKR+F EFPK 
Sbjct: 109 LFGQAAMVDHAVRTFKEYHTDVIGLGNNGSVKVFNALLFACYLAKDYSEVKRVFLEFPKN 168

Query: 176 YGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED 235
           Y IEPN ++YN VIKSFC+S  SSS +S+LAEM RK ++PNAT FG LLAGFYKE KYED
Sbjct: 169 YNIEPNLDSYNTVIKSFCDSESSSSGFSVLAEMDRKRLKPNATTFGHLLAGFYKEEKYED 228

Query: 236 VGKVLQMM-EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294
           VGKVL+MM +K GI  GV+ YNIRIQSLCKLK+S EAKALLDGMLSR +KPN  TY HLI
Sbjct: 229 VGKVLEMMKDKYGIRPGVSTYNIRIQSLCKLKKSAEAKALLDGMLSRQMKPNSVTYAHLI 288

Query: 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354
           HGF  EG+LEG K+LF  M N G +PDS C+F   ++LC+G ++ETAL++C+ S+ K WV
Sbjct: 289 HGFCNEGDLEGGKRLFKDMVNRGYQPDSACYFTLLHYLCKGQDFETALRICKESIGKDWV 348

Query: 355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMW---NAALPR 400
           P+ +TMKSLV GLA I KV EA ELI  +K++F K+   W    A LPR
Sbjct: 349 PNIATMKSLVNGLAGIGKVDEAKELIAKIKEKFTKNVSTWEEIEAGLPR 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837243|ref|XP_002886503.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332344|gb|EFH62762.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/409 (53%), Positives = 304/409 (74%), Gaps = 10/409 (2%)

Query: 1   MALLYRLRTNFNL-----KTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNP 55
           MALL R+R++ +L      +   R+L+++S + + D    LT KEK +A ++ LKSE +P
Sbjct: 1   MALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDP 60

Query: 56  FRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFH 114
            RIL+IC  ASL P+  +DR+AFS AV  L++  HF+A+S LL+  ++ R DL+ +ERF 
Sbjct: 61  DRILEICRAASLTPDCHIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRQDLK-SERFA 119

Query: 115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174
            H+IVLY QANM+DH+++ F +++K+ + ++V +LNALL  C+++K+Y+E KR++ E PK
Sbjct: 120 AHAIVLYAQANMLDHSLRVFRDLEKFEIPRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 179

Query: 175 VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE 234
           +YGIEP+ ETYN++IK FCESG +SS YSI+AEM RK I+PN++ FGL+++GFY E K +
Sbjct: 180 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYSEDKND 239

Query: 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294
           +VGKVL MM+  G+  GV+ YNIRIQSLCK K+S+EAKALLDGMLS G+KPN  TY HLI
Sbjct: 240 EVGKVLVMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLI 299

Query: 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354
            GF  E + E AKKLF  M N GC+PDS C+F   Y+LC+GG++ETAL +C+ SM K WV
Sbjct: 300 RGFCNEDDFEEAKKLFKVMVNRGCKPDSECYFTLIYYLCKGGDFETALVLCKESMEKNWV 359

Query: 355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
           P FS MKSLV GLA  SKV EA ELIG +K++F ++ ++WN   AALP+
Sbjct: 360 PSFSIMKSLVNGLAKDSKVDEAKELIGQVKEKFTRNVELWNEVEAALPQ 408

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553755|gb|AAM62848.1| putative membrane-associated salt-inducible protein [Arabidopsis thaliana]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/408 (53%), Positives = 302/408 (74%), Gaps = 9/408 (2%)

Query: 1   MALLYRLRTNFNL-----KTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNP 55
           MALL R+R++ +L      +   R+L+++S + A D    LT KEK +A ++ LKSE +P
Sbjct: 1   MALLSRIRSSTSLFRYLNASPQIRSLSSASTILAPDSKTPLTSKEKSKAALSLLKSEKDP 60

Query: 56  FRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHV 115
            RIL+IC  ASL P+  +DR+AFS AV  L++ NHF+A+S LL+       L+ +ERF  
Sbjct: 61  DRILEICRAASLTPDCHIDRIAFSAAVENLAEKNHFSAVSNLLDGFIENRHLK-SERFAA 119

Query: 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV 175
           H+IVLY QANM+DH+++ F +++K+ + ++V +LNALL  C+++K+Y+E KR++ E PK+
Sbjct: 120 HAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKM 179

Query: 176 YGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED 235
           YGIEP+ ETYN++IK FCESG +SS YSI+AEM RK I+PN++ FGL+++GFY E K ++
Sbjct: 180 YGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDE 239

Query: 236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295
           VGKVL MM+  G+  GV+ YNIRIQSLCK K+S+EAKALLDGMLS G+KPN  TY HLIH
Sbjct: 240 VGKVLAMMKARGVNIGVSTYNIRIQSLCKKKKSKEAKALLDGMLSAGMKPNTVTYSHLIH 299

Query: 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355
           GF  E + E AKKLF  M N GC+PDS C+F   Y+LC+GG++ETAL +C+ SM K WVP
Sbjct: 300 GFCNEDDFEEAKKLFKVMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVP 359

Query: 356 HFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
            FS MKSLV GLA  SKV EA ELIG +K++F ++ ++WN   AALP+
Sbjct: 360 SFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 407

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555650|ref|XP_003546143.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Glycine max]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/385 (55%), Positives = 280/385 (72%), Gaps = 7/385 (1%)

Query: 19  RNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAF 78
           R+ +T+S+LS  + +  LT K+K R+ I  LKSE+NP RILDIC  A+L P+S +DR AF
Sbjct: 8   RHYSTTSILSP-NSSTPLTSKQKTRSAIHLLKSETNPERILDICRAAALTPDSHIDRRAF 66

Query: 79  SIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMD 138
           S+AVSKL+ A+HF  I   L++LKTRPDLR NE+F  H+IVLYGQANM+DHA++TF E  
Sbjct: 67  SLAVSKLAAAHHFAGIRTFLDDLKTRPDLR-NEKFLSHAIVLYGQANMLDHAIRTFTE-- 123

Query: 139 KYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS 198
                +SV  LN+LL   +L+KNY+E+ RI+ EFPK Y I+PN +TYN VIK+F ESG +
Sbjct: 124 DLPSPRSVKTLNSLLFAALLAKNYKELTRIYLEFPKTYSIQPNLDTYNTVIKAFAESGST 183

Query: 199 SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR 258
           SSVYS+LAEM + +I PN T     L+GFY+E K++DVGKVL++MEK  +   ++ YN+R
Sbjct: 184 SSVYSVLAEMDKNNIAPNVTTLNNSLSGFYREKKFDDVGKVLKLMEKYSVFPSISTYNVR 243

Query: 259 IQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC 318
           IQSLCKLKRS EAKALL+GM+  G KPN  +Y  LIHGF KEG+LE AK+LF  M   G 
Sbjct: 244 IQSLCKLKRSSEAKALLEGMVCNGRKPNSVSYACLIHGFCKEGDLEEAKRLFRDMKRRGY 303

Query: 319 EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE 378
            PD  C+F   +FLC GGE+E AL+V +  M KGWVP+F+TMKSLV GLA   KV EA E
Sbjct: 304 LPDGECYFTLVHFLCCGGEFEAALEVAKECMGKGWVPNFTTMKSLVNGLAGALKVDEAKE 363

Query: 379 LIGLMKKRFPKSGDMWN---AALPR 400
           +I  +K++F +SGD W+   A LP+
Sbjct: 364 VIKQIKEKFAESGDKWDEIEAGLPQ 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849542|ref|XP_002892652.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338494|gb|EFH68911.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/406 (50%), Positives = 293/406 (72%), Gaps = 9/406 (2%)

Query: 1   MALLYRLRTNFNL-KTVNYRNLATSSLLSAGDEAAALTIKEKK-RATIARLKSESNPFRI 58
           MA L+R+RT+ +L + V    L +SS  S+     +LT K+KK RAT++ LKSE+NP RI
Sbjct: 1   MAFLFRIRTSESLVQNVTQFRLQSSS--SSIFTLNSLTSKQKKSRATLSLLKSENNPNRI 58

Query: 59  LDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFHVHS 117
           L+IC  ASL P+  +DR+ FS+AV  L++  HF A+SQLL+  ++ +PD + +E F V +
Sbjct: 59  LEICRSASLTPDYHVDRIIFSVAVVTLAKEKHFVAVSQLLDGFIQNQPDPK-SESFAVRA 117

Query: 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG 177
           I+LYG+ANM+D ++QTF ++++Y + ++V +LNALL  C+++K+Y+E  R++ E PK+YG
Sbjct: 118 IILYGRANMLDRSIQTFRDLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYG 177

Query: 178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
           IEP+ ETYN++I+  CESG +S  YSI+AEM RK ++P A+ FGL++ GFYKE K++DV 
Sbjct: 178 IEPDLETYNRMIRVLCESGSTSLSYSIVAEMERKWVKPTASSFGLMIDGFYKEEKFDDVR 237

Query: 238 KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
           KV++MM++ G+  GV  YNI IQ LCK K+S EAKAL+DG++S  ++PN  TY  LIHGF
Sbjct: 238 KVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGF 297

Query: 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
             E NL+ A  LF  M   G +PDS C+F     LC+GG++ETAL +CR SM K WVP F
Sbjct: 298 CSEENLDEAMNLFEVMVYSGYKPDSECYFTLIRCLCKGGDFETALILCRESMEKNWVPSF 357

Query: 358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
           S MK LV GLAS+SKV EA ELI  +K++F ++ D+WN   AALP+
Sbjct: 358 SIMKWLVNGLASVSKVDEAKELIAQVKEKFTRNVDLWNEVEAALPQ 403

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221069|ref|NP_172629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75200551|sp|Q9SAB4.1|PPR33_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11630, mitochondrial; Flags: Precursor gi|4835794|gb|AAD30260.1|AC007296_21 Strong similarity to gi|3367521 F8K4.8 from Arabidopsis thaliana BAC gb|AC004392 [Arabidopsis thaliana] gi|14326576|gb|AAK60332.1|AF385742_1 At1g11630/F25C20_22 [Arabidopsis thaliana] gi|19548051|gb|AAL87389.1| At1g11630/F25C20_22 [Arabidopsis thaliana] gi|21593339|gb|AAM65288.1| putative membrane-associated salt-inducible protein [Arabidopsis thaliana] gi|332190642|gb|AEE28763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/405 (50%), Positives = 290/405 (71%), Gaps = 9/405 (2%)

Query: 1   MALLYRLRTN-FNLKTVNYRNLATSSLLSAGDEAAALTIKEKK-RATIARLKSESNPFRI 58
           MA L+R+RT+ F L+      L +SS  S+     +LT K+KK R T++ LKSE+NP RI
Sbjct: 1   MAFLFRIRTSEFILQKATQFRLKSSS--SSIFTLKSLTSKQKKSRDTLSLLKSENNPDRI 58

Query: 59  LDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFHVHS 117
           L+IC   SL+P+  +DR+ FS+AV  L++  HF A+SQLL+  ++ +PD  ++E F V +
Sbjct: 59  LEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPD-PKSESFAVRA 117

Query: 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG 177
           I+LYG+ANM+D ++QTF  +++Y + ++V +LNALL  C+++K+Y+E  R++ E PK+YG
Sbjct: 118 IILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYG 177

Query: 178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
           IEP+ ETYN++I+  CESG +SS YSI+AEM RK I+P A  FGL++ GFYKE K+++V 
Sbjct: 178 IEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVR 237

Query: 238 KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
           KV++MM++ G+  GV  YNI IQ LCK K+S EAKAL+DG++S  ++PN  TY  LIHGF
Sbjct: 238 KVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGF 297

Query: 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
             E NL+ A  LF  M   G +PDS C+F   + LC+GG++ETAL +CR SM K WVP F
Sbjct: 298 CSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSF 357

Query: 358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALP 399
           S MK LV GLAS SKV EA ELI ++K++F ++ D+WN   AALP
Sbjct: 358 SVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	401
TAIR|locus:2036833	408	PPR336 "pentatricopeptide repe	0.995	0.977	0.542	7.9e-117
TAIR|locus:2027387	405	AT1G11630 [Arabidopsis thalian	0.987	0.977	0.506	5.4e-102
TAIR|locus:2115375	412	AT4G36680 [Arabidopsis thalian	0.847	0.825	0.337	2.3e-48
TAIR|locus:2046288	418	AT2G18520 [Arabidopsis thalian	0.892	0.856	0.305	1.7e-43
TAIR|locus:2016249	397	AT1G80150 "AT1G80150" [Arabido	0.867	0.876	0.294	2.6e-40
TAIR|locus:2090034	394	AT3G13160 [Arabidopsis thalian	0.927	0.944	0.286	4.2e-40
TAIR|locus:2012120	398	AT1G55890 [Arabidopsis thalian	0.945	0.952	0.276	6.8e-40
TAIR|locus:2090014	551	AT3G13150 "AT3G13150" [Arabido	0.753	0.548	0.287	3.7e-39
TAIR|locus:2089581	405	AT3G14580 "AT3G14580" [Arabido	0.688	0.681	0.296	1.6e-29
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.753	0.400	0.275	2.7e-29

TAIR|locus:2036833 PPR336 "pentatricopeptide repeat 336" [Arabidopsis thaliana (taxid:3702)]

 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 222/409 (54%), Positives = 308/409 (75%)

Query:     1 MALLYRLRTNFNL-KTVN----YRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNP 55
             MALL R+R++ +L + +N     R+L+++S + + D    LT KEK +A ++ LKSE +P
Sbjct:     1 MALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDP 60

Query:    56 FRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFH 114
              RIL+IC  ASL P+  +DR+AFS AV  L++  HF+A+S LL+  ++ RPDL+ +ERF 
Sbjct:    61 DRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLK-SERFA 119

Query:   115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174
              H+IVLY QANM+DH+++ F +++K+ + ++V +LNALL  C+++K+Y+E KR++ E PK
Sbjct:   120 AHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 179

Query:   175 VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE 234
             +YGIEP+ ETYN++IK FCESG +SS YSI+AEM RK I+PN++ FGL+++GFY E K +
Sbjct:   180 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSD 239

Query:   235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294
             +VGKVL MM+  G+  GV+ YNIRIQSLCK K+S+EAKALLDGMLS G+KPN  TY HLI
Sbjct:   240 EVGKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLI 299

Query:   295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354
             HGF  E + E AKKLF  M N GC+PDS C+F   Y+LC+GG++ETAL +C+ SM K WV
Sbjct:   300 HGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWV 359

Query:   355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
             P FS MKSLV GLA  SKV EA ELIG +K++F ++ ++WN   AALP+
Sbjct:   360 PSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IDA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

TAIR|locus:2027387 AT1G11630 [Arabidopsis thaliana (taxid:3702)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 205/405 (50%), Positives = 290/405 (71%)

Query:     1 MALLYRLRTN-FNLKTVNYRNLATSSLLSAGDEAAALTIKEKK-RATIARLKSESNPFRI 58
             MA L+R+RT+ F L+      L +SS  S+     +LT K+KK R T++ LKSE+NP RI
Sbjct:     1 MAFLFRIRTSEFILQKATQFRLKSSS--SSIFTLKSLTSKQKKSRDTLSLLKSENNPDRI 58

Query:    59 LDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFHVHS 117
             L+IC   SL+P+  +DR+ FS+AV  L++  HF A+SQLL+  ++ +PD + +E F V +
Sbjct:    59 LEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPDPK-SESFAVRA 117

Query:   118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG 177
             I+LYG+ANM+D ++QTF  +++Y + ++V +LNALL  C+++K+Y+E  R++ E PK+YG
Sbjct:   118 IILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYG 177

Query:   178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
             IEP+ ETYN++I+  CESG +SS YSI+AEM RK I+P A  FGL++ GFYKE K+++V 
Sbjct:   178 IEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVR 237

Query:   238 KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
             KV++MM++ G+  GV  YNI IQ LCK K+S EAKAL+DG++S  ++PN  TY  LIHGF
Sbjct:   238 KVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGF 297

Query:   298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
               E NL+ A  LF  M   G +PDS C+F   + LC+GG++ETAL +CR SM K WVP F
Sbjct:   298 CSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSF 357

Query:   358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALP 399
             S MK LV GLAS SKV EA ELI ++K++F ++ D+WN   AALP
Sbjct:   358 SVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115375 AT4G36680 [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 116/344 (33%), Positives = 185/344 (53%)

Query:    49 LKSESNPFRILDICCGASLAPESPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRPDL 107
             L+ E +P + L I    S    SP+  R A  + V +L++   F+ I  L+E  K  P +
Sbjct:    40 LRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKI 99

Query:   108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKR 167
             ++ E F+   I  YGQA+M +HAM+TFE+MD+YG  +S  + NALL  C+ SKN+++V +
Sbjct:   100 KE-EPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQ 158

Query:   168 IFTEFPKVYG-IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG 226
             +F E P+ Y  I P+  +Y  +IKS+C+SG       I+ +M+ K +      F  +L+ 
Sbjct:   159 LFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSS 218

Query:   227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286
              YK+ + E    +   M K G       YN+RI S  K +  E  K L++ M S G+KP+
Sbjct:   219 LYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQK-ESPERVKELIEEMSSMGLKPD 277

Query:   287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346
               +Y +L+  + + G L+ AKK++  +    C P++  F    + LC    YE    + +
Sbjct:   278 TISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFK 337

Query:   347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390
              S+    +P F+T+K LV GL    K  +A  LI  +KK+FP S
Sbjct:   338 KSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPS 381

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2046288 AT2G18520 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 115/376 (30%), Positives = 197/376 (52%)

Query:    19 RNLATSSLLSAGDEA--AALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLD-R 75
             R  +T++ + +   A   A+T+ + K    ++L+   +P + L I    S    SPL  R
Sbjct:    12 RRFSTATGIDSQTTAYPGAITMSKAK----SKLRKVQDPDKALAIYKSVSNNSTSPLSSR 67

Query:    76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFE 135
              A  + V +L+++  F+ I  L+E  K  P ++  E F    I  YG+A+M DHAM+ FE
Sbjct:    68 YAMELTVQRLAKSQRFSDIEALIESHKNNPKIK-TETFLSTLIRSYGRASMFDHAMKMFE 126

Query:   136 EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG-IEPNSETYNKVIKSFCE 194
             EMDK G  ++V + NALL  C+ S  +E V ++F EFP+ Y  I P+  +Y  +IKS+C+
Sbjct:   127 EMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFPQRYNNITPDKISYGMLIKSYCD 186

Query:   195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV-LQMMEK-CGIASGV 252
             SG       I+ +M  K +      F  +L   YK    ++   + ++M+ K C + +  
Sbjct:   187 SGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDN-- 244

Query:   253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
              VYN+R+ +  K +  E  K L++ M S G+KP+  +Y +L+  +  +G +  AKK++  
Sbjct:   245 TVYNVRLMNAAK-ESPERVKELMEEMSSVGLKPDTVSYNYLMTAYCVKGMMSEAKKVYEG 303

Query:   313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372
             +     +P++  F    + LC  G Y+  L V + S     +P F T K L  GL   ++
Sbjct:   304 LE----QPNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHKIPDFKTCKHLTEGLVKNNR 359

Query:   373 VAEANELIGLMKKRFP 388
             + +A  +  ++KK+FP
Sbjct:   360 MEDARGVARIVKKKFP 375

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2016249 AT1G80150 "AT1G80150" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 104/353 (29%), Positives = 182/353 (51%)

Query:    38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLD-RMAFSIAVSKLSQANHFNAISQ 96
             +K  +   + +LKSE +P ++ ++   A+      ++ R AF   VS+L+ A   + I  
Sbjct:    34 LKPLEEPALVKLKSERDPEKLYNLF-KANATNRLVIENRFAFEDTVSRLAGAGRLDFIED 92

Query:    97 LLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGC 156
             LLE  KT P  R+ E F V  I+LYG+A M   A+ TF  MD YG ++SV + NA L   
Sbjct:    93 LLEHQKTLPQGRR-EGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVL 151

Query:   157 ILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN 216
               + +   +     + P  YGI+ ++ ++N  IKSFCE G     Y  + EM +  + P+
Sbjct:   152 SFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPD 211

Query:   217 ATDFGLLLAGFYKEHKYEDVGKVL-QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL 275
                +  L++  YK H+   +G  L  +M   G    +  +N+RIQ L   +R+ +A  LL
Sbjct:   212 VVTYTTLISALYK-HERCVIGNGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLL 270

Query:   276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG 335
               M    ++P+  TY  +I GF      + A++++ +M   G +P+   +    ++LC+ 
Sbjct:   271 LLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKA 330

Query:   336 GEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388
             G ++ A  +C+  M K W P+  T++ L+ GL    ++ +A  ++ L+ +R P
Sbjct:   331 GNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIMELVHRRVP 383

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090034 AT3G13160 [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 109/381 (28%), Positives = 190/381 (49%)

Query:     5 YRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCG 64
             + LR NF+  T  + N    S ++A    AA T    K + I  +  E +P  I +    
Sbjct:     7 FLLRGNFSFST--HTNRRFFSAVTA----AAATPSPPKPSLITLVNDERDPKFITEKFKK 60

Query:    65 ASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA 124
             A  A     +   +   V +L+ A  F  + ++LEE    P++ + E F    I LYG+ 
Sbjct:    61 ACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSK-EGFVARIINLYGRV 119

Query:   125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET 184
              M ++A + F+EM +   +++  + NALL  C+ SK ++ V+ IF E P    IEP+  +
Sbjct:   120 GMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVAS 179

Query:   185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV-LQMM 243
             YN +IK  C  G  +   +++ E+  K ++P+   F +LL   Y + K+E+  ++  +M+
Sbjct:   180 YNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMV 239

Query:   244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNL 303
             EK  +   +  YN R+  L    +SEE  +L D +    +KP++ T+  +I GF  EG L
Sbjct:   240 EK-NVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKL 298

Query:   304 EGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL 363
             + A   +  +   GC P  + F      +C+ G+ E+A ++C+   AK  +   + ++ +
Sbjct:   299 DEAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEV 358

Query:   364 VTGLASISKVAEANELIGLMK 384
             V  L   SK  EA E++ L K
Sbjct:   359 VDALVKGSKQDEAEEIVELAK 379

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2012120 AT1G55890 [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 107/387 (27%), Positives = 199/387 (51%)

Query:     1 MALLYR-LRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRIL 59
             M+ L R LR  FN  T   R  ++++ + +   A    I   +++  + +  E NP RI+
Sbjct:     1 MSSLSRVLRGTFN--TCPIRRFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIV 58

Query:    60 DICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV 119
             +    A  +     +   +   V +L  A   + + ++LEE K   D+ + E F    I 
Sbjct:    59 EKFKKACESERFRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSK-EGFAARIIS 117

Query:   120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIE 179
             LYG+A M ++A + FEEM     ++SV + NALL    LSK ++ V+ +F E P    I+
Sbjct:   118 LYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIK 177

Query:   180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV 239
             P+  +YN +IK+ CE        ++L E+  K ++P+   F  LL   Y + ++E +G+ 
Sbjct:   178 PDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFE-LGEE 236

Query:   240 L--QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
             +  +M+EK  +A  +  YN R+  L    +S+E   L   + + G+KP++ ++  +I G 
Sbjct:   237 IWAKMVEK-NVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGS 295

Query:   298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
               EG ++ A+  +  +   G  PD   F +    +C+ G++E+A+++ + + +K ++   
Sbjct:   296 INEGKMDEAEAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQ 355

Query:   358 STMKSLVTGLASISKVAEANELIGLMK 384
             +T++ LV  L   SK  EA E++ + K
Sbjct:   356 TTLQQLVDELVKGSKREEAEEIVKIAK 382

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 87/303 (28%), Positives = 157/303 (51%)

Query:    78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEM 137
             +S  + +L +A  F+ I ++L+  K   D++ +E F +  ++LYG + M +HA + F+EM
Sbjct:    90 YSAFIRRLREAKKFSTIDEVLQYQKKFDDIK-SEDFVIRIMLLYGYSGMAEHAHKLFDEM 148

Query:   138 DKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197
              +    ++V + NALL   + SK  +E  + F E P+  GI P+  TYN +IK+ C  G 
Sbjct:   149 PELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGS 208

Query:   198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNI 257
                + SI  E+ +    P+   F  LL  FY+   + +  ++  +M+   ++  +  YN 
Sbjct:   209 MDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNS 268

Query:   258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG 317
             R++ L + K+  +A  L+D M + GI P++ TY  LI  +  + NLE   K +  M   G
Sbjct:   269 RVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKG 328

Query:   318 CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377
               PD+  + M    LC+ G+ + A++V   ++    +   +  K +V  L    K+ EA 
Sbjct:   329 LTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEAT 388

Query:   378 ELI 380
             +L+
Sbjct:   389 QLV 391

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089581 AT3G14580 "AT3G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 83/280 (29%), Positives = 143/280 (51%)

Query:    78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ-ANMIDHAMQTFEE 136
             +++ ++K  QA  ++ I +++  +K     R +E F  + + +YG  A  I+ A++    
Sbjct:    98 YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157

Query:   137 MDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196
             M  +G   S  + N +L   + +K ++E+ +IF   PK+ G+E ++   N +IK  CESG
Sbjct:   158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKL-GVEIDACCLNILIKGLCESG 216

Query:   197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYN 256
             +  +   +L E  ++  RPN   F  L+ GF  + K+E+  K+L+ MEK  I      +N
Sbjct:   217 NLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFN 276

Query:   257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF-GKEGNLEGAKKLFASMTN 315
             I I  L K  R EE   LL+ M  +G +PN  TY+ +++G   K+ NLE AK++ + M +
Sbjct:   277 ILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLE-AKEMMSQMIS 335

Query:   316 GGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355
              G  P    +      LC+         V R  +  G+VP
Sbjct:   336 WGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHGFVP 375

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 85/308 (27%), Positives = 141/308 (45%)

Query:    74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
             D   ++  +S L +        ++L+++ TR D   N   +   I    + N ++ A + 
Sbjct:   329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITR-DCSPNTVTYNTLISTLCKENQVEEATEL 387

Query:   134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
                +   G+   V   N+L+ G  L++N+     +F E  +  G EP+  TYN +I S C
Sbjct:   388 ARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM-RSKGCEPDEFTYNMLIDSLC 446

Query:   194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
               G      ++L +M       +   +  L+ GF K +K  +  ++   ME  G++    
Sbjct:   447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSV 506

Query:   254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
              YN  I  LCK +R E+A  L+D M+  G KP+  TY  L+  F + G+++ A  +  +M
Sbjct:   507 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAM 566

Query:   314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG--WVPHFSTMKSLVTGLASIS 371
             T+ GCEPD   +      LC+ G  E A K+ R+   KG    PH      ++ GL    
Sbjct:   567 TSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH--AYNPVIQGLFRKR 624

Query:   372 KVAEANEL 379
             K  EA  L
Sbjct:   625 KTTEAINL 632

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LE47	PPR87_ARATH	No assigned EC number	0.5403	0.9950	0.9779	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	401
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	4e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.001
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.002
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.004
pfam01535	31	pfam01535, PPR, PPR repeat	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 23/299 (7%)

Query: 96  QLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG 155
           +L++E   + D +     +   I    ++  +D   + F EM   G+  +V    AL+ G
Sbjct: 461 RLVQEAGLKADCK----LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516

Query: 156 CILSKNYEEVKRIFTEFPKVYGI------EPNSETYNKVIKSFCESGDSSSVYSILAEMR 209
           C  +    +V + F      YGI      +P+   +N +I +  +SG     + +LAEM+
Sbjct: 517 CARAG---QVAKAF----GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569

Query: 210 RKS--IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR 267
            ++  I P+    G L+       + +   +V QM+ +  I     VY I + S  +   
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629

Query: 268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD--SYCF 325
            + A ++ D M  +G+KP+   +  L+   G  G+L+ A ++       G +    SY  
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689

Query: 326 FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384
            M          ++ AL++     +    P  STM +L+T L   +++ +A E++  MK
Sbjct: 690 LMGA--CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 22/45 (48%), Positives = 25/45 (55%)

Query: 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299
           YN  I   CK  + EEA  L + M  RGIKPN+ TY  LI G  K
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 43/243 (17%), Positives = 96/243 (39%), Gaps = 16/243 (6%)

Query: 123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS 182
            A  +D A + ++ + +Y ++ + +     +  C    +++    I+ +  K  G++P+ 
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDE 649

Query: 183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM 242
             ++ ++     +GD    + IL + R++ I+     +  L+        ++   K L++
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK---KALEL 706

Query: 243 MEK---CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299
            E      +   V+  N  I +LC+  +  +A  +L  M   G+ PN  TY  L+    +
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766

Query: 300 EGNLEGAKKLFASMTNGGCEPD--------SYCFFMFTYFLCQGGEYETALKVCRASMAK 351
           + + +    L +     G +P+          C   F    C  GE   +    R  +  
Sbjct: 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKA-CALGEPVVSFDSGRPQIEN 825

Query: 352 GWV 354
            W 
Sbjct: 826 KWT 828

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.6 bits (117), Expect = 6e-08
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 285 PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY 330
           P++ TY  LI G+ K+G +E A KLF  M   G +P+ Y     TY
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVY-----TY 41

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK 229
           P+  TYN +I  +C+ G       +  EM+++ I+PN   + +L+ G  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 12/167 (7%)

Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
           YG       A++ FE M   G+  +     A+L  C  S   E+   IF    + + I+P
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460

Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV- 239
            +  Y  +I+     G     Y+++   RR   +P    +  LL    + HK  ++G++ 
Sbjct: 461 RAMHYACMIELLGREGLLDEAYAMI---RRAPFKPTVNMWAALLTA-CRIHKNLELGRLA 516

Query: 240 ---LQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI 283
              L  M    + + V + N+   S     R  EA  +++ +  +G+
Sbjct: 517 AEKLYGMGPEKLNNYVVLLNLYNSS----GRQAEAAKVVETLKRKGL 559

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.0 bits (100), Expect = 9e-06
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 281 RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
           +G+KP++ TY  LI G  + G ++ A +L   M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286
            YN  I  LCK  R EEA  L   M  RGI+P+
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS 322
           TY  LI G  K G +E A +LF  M   G EPD 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA 217
           TYN +I   C++G       +  EM+ + I P+ 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRP 215
           ETYN ++ +  ++GD     ++L EM+   ++P
Sbjct: 2   ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.2 bits (85), Expect = 0.001
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
           N L+ G       EE  ++F E  K  GI+PN  TY+ +I   C
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 11/164 (6%)

Query: 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL 222
           E+ + +F   P     E  +  +N ++  +   G S     +  EMR   +  +   F +
Sbjct: 276 EDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330

Query: 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL-CKLKRSEEAKALLDGMLSR 281
           ++  F +    E   +    + + G    + V N  +  L  K  R E+A+ + D M  +
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPRK 389

Query: 282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF 325
               NL ++  LI G+G  G    A ++F  M   G  P+   F
Sbjct: 390 ----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 48/226 (21%), Positives = 82/226 (36%), Gaps = 47/226 (20%)

Query: 105 PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE 164
           PDL +    H H +                    ++G    VD +NAL+   +   +   
Sbjct: 201 PDLARGREVHAHVV--------------------RFGFELDVDVVNALITMYVKCGDVVS 240

Query: 165 VKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDF---- 220
            + +F   P+   I     ++N +I  + E+G+      +   MR  S+ P+        
Sbjct: 241 ARLVFDRMPRRDCI-----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295

Query: 221 ---GLLL-AGFYKE-HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL 275
               LL      +E H Y         + K G A  V+V N  IQ    L    EA+ + 
Sbjct: 296 SACELLGDERLGREMHGY---------VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346

Query: 276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD 321
             M ++       ++  +I G+ K G  + A + +A M      PD
Sbjct: 347 SRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

Length = 857

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 34.4 bits (80), Expect = 0.004
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGC 318
           TY  LI G+ K G LE A +LF  M   G 
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	401
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.81
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
PRK14574	822	hmsH outer membrane protein; Provisional	99.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.74
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.74
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.74
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.7
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.68
KOG2076	895	consensus RNA polymerase III transcription factor	99.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.67
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.66
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.63
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.62
KOG1126	638	consensus DNA-binding cell division cycle control	99.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.6
KOG1126	638	consensus DNA-binding cell division cycle control	99.59
KOG2076	895	consensus RNA polymerase III transcription factor	99.58
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.58
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.56
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.55
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.53
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.52
KOG2003	840	consensus TPR repeat-containing protein [General f	99.52
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.51
KOG1129	478	consensus TPR repeat-containing protein [General f	99.51
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.51
PRK12370	553	invasion protein regulator; Provisional	99.49
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.46
PRK12370	553	invasion protein regulator; Provisional	99.45
KOG2003	840	consensus TPR repeat-containing protein [General f	99.45
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.45
KOG1129	478	consensus TPR repeat-containing protein [General f	99.42
PF13041	50	PPR_2: PPR repeat family	99.4
PF13041	50	PPR_2: PPR repeat family	99.39
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.36
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.36
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.36
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.35
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.35
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.35
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.32
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.29
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.27
PRK11189	296	lipoprotein NlpI; Provisional	99.27
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.26
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.26
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.26
PRK11189	296	lipoprotein NlpI; Provisional	99.25
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.23
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.11
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.11
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.11
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.1
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.1
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.09
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.07
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.05
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.04
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.02
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.01
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.99
PRK04841	903	transcriptional regulator MalT; Provisional	98.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.93
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.9
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.87
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.86
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.85
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.85
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.84
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.83
KOG1125	579	consensus TPR repeat-containing protein [General f	98.83
PLN02789	320	farnesyltranstransferase	98.83
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.82
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.81
PLN02789	320	farnesyltranstransferase	98.81
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.81
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.8
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.8
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.8
PF12854	34	PPR_1: PPR repeat	98.8
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.78
PRK04841	903	transcriptional regulator MalT; Provisional	98.77
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.75
PF12854	34	PPR_1: PPR repeat	98.74
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.73
PRK15359	144	type III secretion system chaperone protein SscB;	98.73
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.72
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.72
KOG1125	579	consensus TPR repeat-containing protein [General f	98.72
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.68
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.65
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.62
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.59
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.58
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.58
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.56
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.56
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.55
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.55
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.48
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.43
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.39
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.39
PRK15359	144	type III secretion system chaperone protein SscB;	98.38
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.36
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.26
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.25
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.24
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.24
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.22
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.22
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.22
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.2
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.19
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.14
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.09
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.06
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.98
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.96
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.96
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.94
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.91
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.91
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.9
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.88
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.87
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.85
KOG0553	304	consensus TPR repeat-containing protein [General f	97.85
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.84
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.83
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.82
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.81
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.8
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.76
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.74
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.73
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.72
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.71
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.71
PRK10803	263	tol-pal system protein YbgF; Provisional	97.67
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.66
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.64
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.63
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.58
PRK10803	263	tol-pal system protein YbgF; Provisional	97.58
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.57
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.53
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.51
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.5
PF12688	120	TPR_5: Tetratrico peptide repeat	97.49
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.48
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.47
KOG0553	304	consensus TPR repeat-containing protein [General f	97.44
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.41
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.39
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.36
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.3
PF12688	120	TPR_5: Tetratrico peptide repeat	97.29
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.25
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.25
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.24
PF13371	73	TPR_9: Tetratricopeptide repeat	97.24
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.23
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.16
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	97.04
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.98
PF13371	73	TPR_9: Tetratricopeptide repeat	96.97
PF13428	44	TPR_14: Tetratricopeptide repeat	96.96
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.92
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.92
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.86
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.78
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.72
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.71
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.67
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.63
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.61
PRK15331	165	chaperone protein SicA; Provisional	96.59
PRK15331	165	chaperone protein SicA; Provisional	96.58
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.58
PF13512	142	TPR_18: Tetratricopeptide repeat	96.52
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.47
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.44
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.43
PF13512	142	TPR_18: Tetratricopeptide repeat	96.42
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.4
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.39
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.38
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.35
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.32
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.26
KOG3941	406	consensus Intermediate in Toll signal transduction	96.25
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.19
KOG1585	308	consensus Protein required for fusion of vesicles	96.19
KOG3941	406	consensus Intermediate in Toll signal transduction	96.04
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.02
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.97
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.96
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.95
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	95.91
KOG4555	175	consensus TPR repeat-containing protein [Function	95.85
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.82
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.77
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.75
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.71
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.69
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.68
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.66
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.62
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.61
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.58
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	95.5
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	95.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.38
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.17
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	95.01
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.0
KOG4555	175	consensus TPR repeat-containing protein [Function	94.99
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.99
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.96
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.95
PF13428	44	TPR_14: Tetratricopeptide repeat	94.94
PRK11906	458	transcriptional regulator; Provisional	94.91
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.85
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.81
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.54
KOG1585	308	consensus Protein required for fusion of vesicles	94.53
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.46
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.46
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.43
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.26
KOG4570	418	consensus Uncharacterized conserved protein [Funct	94.24
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.11
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.99
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.93
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.85
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.6
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.13
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.1
PF13929	292	mRNA_stabil: mRNA stabilisation	92.76
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.68
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.6
KOG1258	577	consensus mRNA processing protein [RNA processing	92.52
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.32
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.25
PRK11906	458	transcriptional regulator; Provisional	92.13
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.1
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.04
KOG4234	271	consensus TPR repeat-containing protein [General f	91.78
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.77
PF13431	34	TPR_17: Tetratricopeptide repeat	91.67
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.38
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.37
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.31
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.31
KOG1258	577	consensus mRNA processing protein [RNA processing	91.2
PF13431	34	TPR_17: Tetratricopeptide repeat	91.13
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.02
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.95
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	89.93
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	89.76
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.6
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.22
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.99
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.8
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.61
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.45
KOG4648	536	consensus Uncharacterized conserved protein, conta	88.18
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	88.02
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.99
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	87.79
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	87.4
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.2
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	86.98
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.84
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.53
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	86.27
PF13929	292	mRNA_stabil: mRNA stabilisation	86.13
COG3947	361	Response regulator containing CheY-like receiver a	86.09
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.04
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.02
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	85.9
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.51
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.82
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.63
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.47
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	84.21
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	84.21
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	84.12
KOG4507	886	consensus Uncharacterized conserved protein, conta	83.93
PRK09687	280	putative lyase; Provisional	83.41
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	83.39
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	83.34
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	83.11
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.0
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	82.87
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	82.49
PRK09687	280	putative lyase; Provisional	82.08
PRK11619	644	lytic murein transglycosylase; Provisional	81.99
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	81.9
KOG1586	288	consensus Protein required for fusion of vesicles	81.87
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	81.81
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.39
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	81.34
KOG4234	271	consensus TPR repeat-containing protein [General f	81.26
COG5159	421	RPN6 26S proteasome regulatory complex component [	81.19
PF13762	145	MNE1: Mitochondrial splicing apparatus component	81.1
KOG0687	393	consensus 26S proteasome regulatory complex, subun	80.97
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.94

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-56  Score=433.45  Aligned_cols=360  Identities=14%  Similarity=0.169  Sum_probs=334.6

Q ss_pred             chhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHH
Q 015765           37 TIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH  116 (401)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  116 (401)
                      +....++.+++.+.+.++.+.|.++|+.+... +..||..+|+.+|.+|++.|++++|.++|++|... +..+|..+|+.
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTyna  512 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGA  512 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence            45667888899999999999999999998776 58889999999999999999999999999999854 45667999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh-cCCCCCHHhHHHHHHHHHhc
Q 015765          117 SIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV-YGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~  195 (401)
                      +|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. .|+.||..+|++++.+|++.
T Consensus       513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~  592 (1060)
T PLN03218        513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA  592 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999643 57899999999999999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL  275 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  275 (401)
                      |++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015765          276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP  355 (401)
Q Consensus       276 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  355 (401)
                      ++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus       673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P  752 (1060)
T PLN03218        673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP  752 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCcccchhcC
Q 015765          356 HFSTMKSLVTGLASISKVAEANELIGLMKKR-FPKSGDMWNAAL  398 (401)
Q Consensus       356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ll  398 (401)
                      |..+|+.++.+|++.|++++|.+++++|.+. ..+|..+|++|+
T Consensus       753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI  796 (1060)
T PLN03218        753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT  796 (1060)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            9999999999999999999999999999887 778888898875

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-55  Score=424.94  Aligned_cols=360  Identities=18%  Similarity=0.277  Sum_probs=328.8

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCC-------------------------------CccHhHHHHHHHHHH
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPES-------------------------------PLDRMAFSIAVSKLS   86 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~   86 (401)
                      +......++..+.+.|+.+.|+++|++|...+-.                               .||..+|+.++.+|+
T Consensus       369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~  448 (1060)
T PLN03218        369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA  448 (1060)
T ss_pred             CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3344455555555666666666666665543211                               168889999999999


Q ss_pred             hCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015765           87 QANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVK  166 (401)
Q Consensus        87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  166 (401)
                      +.|+++.|.++|+.|... +..+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus       449 k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl  527 (1060)
T PLN03218        449 SSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF  527 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            999999999999999854 5667799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015765          167 RIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR--KSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME  244 (401)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  244 (401)
                      ++|++|. ..|+.||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus       528 ~lf~~M~-~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~  606 (1060)
T PLN03218        528 GAYGIMR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH  606 (1060)
T ss_pred             HHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999995 459999999999999999999999999999999976  6789999999999999999999999999999999


Q ss_pred             HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhh
Q 015765          245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYC  324 (401)
Q Consensus       245 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  324 (401)
                      +.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+
T Consensus       607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t  686 (1060)
T PLN03218        607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS  686 (1060)
T ss_pred             HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCcccchhcCC
Q 015765          325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR-FPKSGDMWNAALP  399 (401)
Q Consensus       325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ll~  399 (401)
                      |+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. ..||..+|+++|.
T Consensus       687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999887 7899999999874

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.5e-52  Score=398.81  Aligned_cols=347  Identities=17%  Similarity=0.214  Sum_probs=269.9

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCC-----------
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQ-----------  109 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------  109 (401)
                      .++..+..+...+++++|+++|+++....+..||..+|+.++.+|++.++++.+.+++..|...+ ..+           
T Consensus        89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~  167 (697)
T PLN03081         89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLM  167 (697)
T ss_pred             eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence            67888999999999999999999987655556666666666666666666666666666655332 222           


Q ss_pred             --------------------chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH----------------------
Q 015765          110 --------------------NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVD----------------------  147 (401)
Q Consensus       110 --------------------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------  147 (401)
                                          |..+|+.++.+|++.|++++|+++|++|.+.|+.|+..                      
T Consensus       168 y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~  247 (697)
T PLN03081        168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH  247 (697)
T ss_pred             HhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence                                34456666666666666666666666665555444433                      


Q ss_pred             -------------HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 015765          148 -------------ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIR  214 (401)
Q Consensus       148 -------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  214 (401)
                                   +++.|+++|++.|++++|.++|++|.     ++|..+||.++.+|++.|++++|.++|++|.+.|+.
T Consensus       248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence                         34555666666667777777776664     467788888888888888888888888888888888


Q ss_pred             CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015765          215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI  294 (401)
Q Consensus       215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li  294 (401)
                      ||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.    .||..+||+||
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI  398 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALI  398 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888885    35888888888


Q ss_pred             HHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCH
Q 015765          295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA-KGWVPHFSTMKSLVTGLASISKV  373 (401)
Q Consensus       295 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~  373 (401)
                      .+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++
T Consensus       399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~  478 (697)
T PLN03081        399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL  478 (697)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence            88888888888888888888888888888888888888888888888888888876 48888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCCCcccchhcCC
Q 015765          374 AEANELIGLMKKRFPKSGDMWNAALP  399 (401)
Q Consensus       374 ~~a~~~~~~~~~~~~~~~~~~~~ll~  399 (401)
                      ++|.+++++|.  ..|+..+|++||.
T Consensus       479 ~eA~~~~~~~~--~~p~~~~~~~Ll~  502 (697)
T PLN03081        479 DEAYAMIRRAP--FKPTVNMWAALLT  502 (697)
T ss_pred             HHHHHHHHHCC--CCCCHHHHHHHHH
Confidence            88888887763  5577788888763

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.5e-50  Score=391.47  Aligned_cols=349  Identities=15%  Similarity=0.187  Sum_probs=299.3

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS  117 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  117 (401)
                      ....++.++..+.+.|+.+.|..+|+.+..     +|..+|+.+|.+|++.|++++|.++|++|... +..||..+|+.+
T Consensus       221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~l  294 (857)
T PLN03077        221 DVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSV  294 (857)
T ss_pred             ccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHH
Confidence            344677888999999999999999998853     47788999999999999999999999999854 466678899999


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      +.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.     .||..+|++++.+|++.|+
T Consensus       295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~  369 (857)
T PLN03077        295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGL  369 (857)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999985     5788899999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 015765          198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG  277 (401)
Q Consensus       198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  277 (401)
                      +++|.++|++|.+.|+.||..||+.++.+|++.|+++++.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++
T Consensus       370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~  449 (857)
T PLN03077        370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN  449 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999888889999999999988888888888888888888888888888888888888877777777777766


Q ss_pred             HHHC------------------------------CC--------------------------------------------
Q 015765          278 MLSR------------------------------GI--------------------------------------------  283 (401)
Q Consensus       278 ~~~~------------------------------~~--------------------------------------------  283 (401)
                      |.+.                              ++                                            
T Consensus       450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na  529 (857)
T PLN03077        450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA  529 (857)
T ss_pred             CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence            5432                              12                                            


Q ss_pred             ---------------------CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765          284 ---------------------KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL  342 (401)
Q Consensus       284 ---------------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  342 (401)
                                           .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~  609 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL  609 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence                                 34556677888888888899999999999998899999999999999999999999999


Q ss_pred             HHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcCC
Q 015765          343 KVCRASM-AKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALP  399 (401)
Q Consensus       343 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll~  399 (401)
                      ++|+.|. +.|+.|+..+|+.++.+|++.|++++|.+++++|.  ..||..+|++||.
T Consensus       610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~  665 (857)
T PLN03077        610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLN  665 (857)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHH
Confidence            9999998 56889999999999999999999999999999884  5688888988864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.6e-49  Score=379.07  Aligned_cols=345  Identities=16%  Similarity=0.175  Sum_probs=317.9

Q ss_pred             chhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-----------
Q 015765           37 TIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRP-----------  105 (401)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------  105 (401)
                      +....++.++..+.+.|+.+.|.++|+.+..     ||..+|+.++.+|++.|++++|.++|++|...+           
T Consensus       156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l  230 (697)
T PLN03081        156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM  230 (697)
T ss_pred             cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence            5566788899999999999999999999853     478899999999999999999999999997432           


Q ss_pred             -----------------------CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 015765          106 -----------------------DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY  162 (401)
Q Consensus       106 -----------------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  162 (401)
                                             +..++..+++.+|.+|++.|++++|.++|++|.    .+|..+||.++.+|++.|++
T Consensus       231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~  306 (697)
T PLN03081        231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS  306 (697)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCH
Confidence                                   223456677889999999999999999999997    56899999999999999999


Q ss_pred             HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 015765          163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM  242 (401)
Q Consensus       163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  242 (401)
                      ++|.++|++|. ..|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|.++|++
T Consensus       307 ~eA~~lf~~M~-~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~  385 (697)
T PLN03081        307 EEALCLYYEMR-DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR  385 (697)
T ss_pred             HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence            99999999995 55999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh-CCCCCC
Q 015765          243 MEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN-GGCEPD  321 (401)
Q Consensus       243 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~  321 (401)
                      |.+    ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+
T Consensus       386 m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~  461 (697)
T PLN03081        386 MPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR  461 (697)
T ss_pred             CCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence            964    688999999999999999999999999999999999999999999999999999999999999986 599999


Q ss_pred             HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015765          322 SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAAL  398 (401)
Q Consensus       322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll  398 (401)
                      ..+|+.++.+|++.|++++|.+++++|   ++.|+..+|++++.+|...|+++.|.++++++.+..|.+..+|+.|+
T Consensus       462 ~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~  535 (697)
T PLN03081        462 AMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL  535 (697)
T ss_pred             ccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence            999999999999999999999998765   67899999999999999999999999999999888888888887765

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.7e-49  Score=386.58  Aligned_cols=341  Identities=16%  Similarity=0.210  Sum_probs=316.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      ..+.++..+.+.|+.+.|.++|+.+..     +|..+|+.+|.+|++.|++++|+++|++|... +..||..+|+.++.+
T Consensus       123 ~~n~li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~  196 (857)
T PLN03077        123 LGNAMLSMFVRFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRT  196 (857)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHH
Confidence            446777888899999999999998853     47889999999999999999999999999854 567779999999999


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS  200 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (401)
                      |+..++++.+.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|.     .||..+||++|.+|++.|++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~e  271 (857)
T PLN03077        197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLE  271 (857)
T ss_pred             hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHH
Confidence            99999999999999999999999999999999999999999999999999996     6899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765          201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  280 (401)
                      |+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. 
T Consensus       272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-  350 (857)
T PLN03077        272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-  350 (857)
T ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             CCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 015765          281 RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM  360 (401)
Q Consensus       281 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  360 (401)
                         .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..++
T Consensus       351 ---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~  427 (857)
T PLN03077        351 ---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA  427 (857)
T ss_pred             ---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence               46889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcCC
Q 015765          361 KSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALP  399 (401)
Q Consensus       361 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll~  399 (401)
                      +.|+.+|++.|++++|.++|++|.+   +|..+||++|.
T Consensus       428 n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~  463 (857)
T PLN03077        428 NALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIA  463 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHH
Confidence            9999999999999999999999865   57788888874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=9e-23  Score=203.97  Aligned_cols=342  Identities=14%  Similarity=0.043  Sum_probs=225.1

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY  121 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  121 (401)
                      +......+...+++++|.+.|..+...  .+.+...+..+...+...|++++|.+.++.+....  +.+...+..+...+
T Consensus       468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~  543 (899)
T TIGR02917       468 HNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLY  543 (899)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence            333444555556666666666555432  22234455555566666666666666666655221  23345556666666


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHH
Q 015765          122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSV  201 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  201 (401)
                      .+.|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++.+.+.  .+.+...|..+...+.+.|++++|
T Consensus       544 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A  620 (899)
T TIGR02917       544 LRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKA  620 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            66666666666666665554 345555666666666677777777777666543  244556677777777777777777


Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      ...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+..++..+...+...|++++|.++++.+.+.
T Consensus       621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  698 (899)
T TIGR02917       621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ  698 (899)
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            77777776543 3355566667777777777777777777776653 334566777777777777777777777777666


Q ss_pred             CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 015765          282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMK  361 (401)
Q Consensus       282 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  361 (401)
                      + ..+...+..+...+...|++++|.+.|+.+.+.+  |+..++..++.++.+.|++++|.+.++++.+.. +.+...+.
T Consensus       699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~  774 (899)
T TIGR02917       699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT  774 (899)
T ss_pred             C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            4 3355667777777777888888888888777653  444666777777778888888888887777654 55677777


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          362 SLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       362 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      .+...|...|++++|.+.|+++.+..|.+...++.
T Consensus       775 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  809 (899)
T TIGR02917       775 ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN  809 (899)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            78888888888888888888888877777666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=2.4e-22  Score=200.97  Aligned_cols=336  Identities=12%  Similarity=0.049  Sum_probs=187.4

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM  126 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  126 (401)
                      ..+...++.+.|+..+..+...  .+.+...+..++..+.+.|++++|.++++.+....  +.+...+..+..+|...|+
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~  616 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGD  616 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCC
Confidence            3334444445555544444322  12233344445555555555555555555544221  2223455555555555555


Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 015765          127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILA  206 (401)
Q Consensus       127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  206 (401)
                      +++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.+..  +.+..++..+...+...|++++|.++++
T Consensus       617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~  693 (899)
T TIGR02917       617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAK  693 (899)
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555555555443 3344445555555555555555555555554321  2334455555555555555555555555


Q ss_pred             HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015765          207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN  286 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  286 (401)
                      .+.+.+ +.+...+..+...+...|++++|.+.++.+...+  |+..++..+..++.+.|++++|.+.++++.+.. +.+
T Consensus       694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~  769 (899)
T TIGR02917       694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND  769 (899)
T ss_pred             HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence            555443 3344555555566666666666666666665543  333455556666666666666666666666553 235


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG  366 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  366 (401)
                      ...+..+...|...|++++|.++|+++.+.. +.+...+..+...+...|+ ++|..+++++.+.. +.+..++..+..+
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~  846 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWL  846 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            5666666666666677777777777666553 3455566666666666666 55666666666543 3344556666667


Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          367 LASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      +...|++++|.++++++.+..|.+..++..
T Consensus       847 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  876 (899)
T TIGR02917       847 LVEKGEADRALPLLRKAVNIAPEAAAIRYH  876 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence            777777777777777777776666655543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=6.3e-22  Score=178.53  Aligned_cols=296  Identities=9%  Similarity=0.058  Sum_probs=225.6

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHh
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS---VDALNALLLGCIL  158 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  158 (401)
                      ...+...|++++|+..|+++....  +.+..++..+...+...|++++|..+++.+.+.+..++   ...+..+...|.+
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            344567788888999998888432  34456788888888888999999998888877532221   2456777888888


Q ss_pred             cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChH
Q 015765          159 SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA----TDFGLLLAGFYKEHKYE  234 (401)
Q Consensus       159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~  234 (401)
                      .|++++|..+|+++.+.  .+.+..++..++..+.+.|++++|.+.++.+.+.+..+..    ..+..+...+.+.|+++
T Consensus       120 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  197 (389)
T PRK11788        120 AGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD  197 (389)
T ss_pred             CCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence            89999999999888653  2456678888888888899999999999888776433221    23456667778888999


Q ss_pred             HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765          235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       235 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~  314 (401)
                      +|...++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.
T Consensus       198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  276 (389)
T PRK11788        198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL  276 (389)
T ss_pred             HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999998887764 334567777888888899999999999988876433234667888888888999999999998888


Q ss_pred             hCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhc
Q 015765          315 NGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS---ISKVAEANELIGLMKKR  386 (401)
Q Consensus       315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~  386 (401)
                      +.  .|+...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.+++..+++++.++
T Consensus       277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            75  466666788888888899999999999888765  5777788877777664   55888888888888765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=2e-22  Score=181.76  Aligned_cols=330  Identities=15%  Similarity=0.108  Sum_probs=264.7

Q ss_pred             HHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCC--chhHHHHHHHHHHhcC
Q 015765           48 RLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQ--NERFHVHSIVLYGQAN  125 (401)
Q Consensus        48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~  125 (401)
                      .+...++++.|+..|..+...  .+.+..++..+...+...|++++|..+++.+...+....  ....+..+...|.+.|
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            345678899999999998765  344677899999999999999999999999986544332  1246788899999999


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---HHhHHHHHHHHHhcCChhHHH
Q 015765          126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---SETYNKVIKSFCESGDSSSVY  202 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~  202 (401)
                      ++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.....+.   ...+..+...+.+.|++++|.
T Consensus       122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999998764 567888999999999999999999999999764211111   123556777888999999999


Q ss_pred             HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015765          203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG  282 (401)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  282 (401)
                      +.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+. 
T Consensus       201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  278 (389)
T PRK11788        201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-  278 (389)
T ss_pred             HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            9999998763 34566788888999999999999999999987643333467889999999999999999999999887 


Q ss_pred             CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHH
Q 015765          283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ---GGEYETALKVCRASMAKGWVPHFST  359 (401)
Q Consensus       283 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~  359 (401)
                       .|+...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.+++..++++|.+.++.|++. 
T Consensus       279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-  354 (389)
T PRK11788        279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-  354 (389)
T ss_pred             -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC-
Confidence             466667788999999999999999999999875  6898899988887764   568999999999999988877776 


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015765          360 MKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAAL  398 (401)
Q Consensus       360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll  398 (401)
                           ..|.++|.......       ...|+..+|.++.
T Consensus       355 -----~~c~~cg~~~~~~~-------~~c~~c~~~~~~~  381 (389)
T PRK11788        355 -----YRCRNCGFTARTLY-------WHCPSCKAWETIK  381 (389)
T ss_pred             -----EECCCCCCCCccce-------eECcCCCCccCcC
Confidence                 34666665432211       1345666666653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=3.8e-20  Score=175.28  Aligned_cols=337  Identities=12%  Similarity=-0.002  Sum_probs=272.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      -...++..+-+.|+++.|+.++......  .+.+...+..++.+....|++++|++.++++....  |.+...+..+...
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~  119 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASV  119 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence            4556677888899999999999888755  33345567777788888999999999999998432  3445678888999


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS  200 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (401)
                      +...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+....  +.+...+..+ ..+.+.|++++
T Consensus       120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~e  195 (656)
T PRK15174        120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPE  195 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHH
Confidence            999999999999999998874 5567888899999999999999999999886542  2233334333 45788999999


Q ss_pred             HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH----HHHHHH
Q 015765          201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE----AKALLD  276 (401)
Q Consensus       201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~  276 (401)
                      |...++.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++    |...|+
T Consensus       196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~  274 (656)
T PRK15174        196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR  274 (656)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence            99999998776433445555666788899999999999999998875 4467788889999999999986    899999


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 015765          277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH  356 (401)
Q Consensus       277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  356 (401)
                      +..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++...+  |+
T Consensus       275 ~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~  350 (656)
T PRK15174        275 HALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GV  350 (656)
T ss_pred             HHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc
Confidence            9988743 257889999999999999999999999999864 3345667788899999999999999999998764  44


Q ss_pred             H-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          357 F-STMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       357 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      . ..+..+..++...|+.++|...|++..+..|.+
T Consensus       351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            3 344456778899999999999999998886654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=5.5e-18  Score=160.67  Aligned_cols=307  Identities=10%  Similarity=0.090  Sum_probs=251.3

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG  155 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  155 (401)
                      .-...++..+.+.|++++|..+++......  +.+...+..++.+....|+++.|...|+++.+.. +.+...+..+...
T Consensus        43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~  119 (656)
T PRK15174         43 QNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASV  119 (656)
T ss_pred             cCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            345567888899999999999999988433  3334567777788888999999999999999876 5677888889999


Q ss_pred             HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 015765          156 CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED  235 (401)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  235 (401)
                      +...|++++|...+++..+..  +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++
T Consensus       120 l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~e  195 (656)
T PRK15174        120 LLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPE  195 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHH
Confidence            999999999999999997642  44566788899999999999999999998876532 233344333 34788999999


Q ss_pred             HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH----HHHHHH
Q 015765          236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG----AKKLFA  311 (401)
Q Consensus       236 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~  311 (401)
                      |...++.+.+....++...+..+..++.+.|++++|...+++..+... .+...+..+...+...|++++    |...++
T Consensus       196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~  274 (656)
T PRK15174        196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWR  274 (656)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence            999999987764334445556667888999999999999999998753 357788889999999999986    899999


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          312 SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       312 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      +..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++.+..|.+.
T Consensus       275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence            998763 3356788899999999999999999999999875 44567788899999999999999999999998877664


Q ss_pred             c
Q 015765          392 D  392 (401)
Q Consensus       392 ~  392 (401)
                      .
T Consensus       353 ~  353 (656)
T PRK15174        353 K  353 (656)
T ss_pred             H
Confidence            4

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=3e-17  Score=156.03  Aligned_cols=332  Identities=11%  Similarity=-0.003  Sum_probs=188.1

Q ss_pred             HHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh
Q 015765           44 ATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ  123 (401)
Q Consensus        44 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  123 (401)
                      ..-..+...++++.|+..|..+...   .|+...|..+..++.+.|++++|++.++......  |.+...+..+..+|..
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence            3445667788999999999987643   2356788889999999999999999999988432  3446677788888888


Q ss_pred             cCChHHHHHHHHHHhhC---------------------------------------------------------------
Q 015765          124 ANMIDHAMQTFEEMDKY---------------------------------------------------------------  140 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~---------------------------------------------------------------  140 (401)
                      .|++++|+..|......                                                               
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL  286 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence            88888886544332111                                                               


Q ss_pred             -------------------------------------C-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC
Q 015765          141 -------------------------------------G-L-RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN  181 (401)
Q Consensus       141 -------------------------------------~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  181 (401)
                                                           + . +.....++.+...+...|++++|+..|++..+.   .|+
T Consensus       287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~  363 (615)
T TIGR00990       287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL---DPR  363 (615)
T ss_pred             ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC
Confidence                                                 0 0 011122333333444455555555555555432   222


Q ss_pred             -HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015765          182 -SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ  260 (401)
Q Consensus       182 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  260 (401)
                       ...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~  441 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV  441 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence             3344555555555555555555555554432 2234455555555555666666666665555543 223444555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHc
Q 015765          261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY------CFFMFTYFLCQ  334 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~  334 (401)
                      ++.+.|++++|...|++..+.. +-+...|+.+...+...|++++|.+.|++..+.....+..      .++.....+..
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~  520 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW  520 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence            5556666666666666555442 1134555555666666666666666666655432110000      11111122233


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          335 GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      .|++++|.+++++..... +.+...+..+...+...|++++|.+.|++..+..
T Consensus       521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            466666666666655543 2233445666666666666666666666665543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=1.3e-16  Score=161.41  Aligned_cols=334  Identities=11%  Similarity=0.036  Sum_probs=232.9

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCchhHH-----------
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQNERFH-----------  114 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~-----------  114 (401)
                      ..+...+++++|+..|+.+...  .|.+...+..+..++.+.|++++|+..|++.... +.... ...+           
T Consensus       277 ~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        277 LAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHHHHHHHhhhHHH
Confidence            4456678999999999988754  3346788999999999999999999999998843 32221 1111           


Q ss_pred             -HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHH-----
Q 015765          115 -VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV-----  188 (401)
Q Consensus       115 -~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-----  188 (401)
                       ......+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|++..+..  +.+...+..+     
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence             122446778999999999999998875 5567788888999999999999999999987542  2223233222     


Q ss_pred             -------------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 015765          189 -------------------------------------IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH  231 (401)
Q Consensus       189 -------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  231 (401)
                                                           ...+...|++++|.+.|++..+.. +-+...+..+...|.+.|
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence                                                 233446788888888888887753 335566777888888889


Q ss_pred             ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------
Q 015765          232 KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR------------------------------  281 (401)
Q Consensus       232 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------------------  281 (401)
                      ++++|...++++.+.. +.+...+..+...+...++.++|...++.+...                              
T Consensus       510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            9999988888887643 222332322222333344444444433322110                              


Q ss_pred             ---------CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          282 ---------GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       282 ---------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                               ..+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|.+.++...+..
T Consensus       589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~  667 (1157)
T PRK11447        589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA  667 (1157)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence                     012344556667777888888888888888888753 3356778888888888888888888888777543


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          353 WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                       +.+......+..++...|++++|.++++++.+..+.+
T Consensus       668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~  704 (1157)
T PRK11447        668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ  704 (1157)
T ss_pred             -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence             3345566777788888888999998888888765443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=2.5e-16  Score=152.53  Aligned_cols=343  Identities=10%  Similarity=0.015  Sum_probs=224.5

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY  121 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  121 (401)
                      ...+...+...++++.|+++++.....  .|.+...+..+...+...|++++|+..++++....  |.+.. +..+..++
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l  126 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVY  126 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHH
Confidence            455566778888888888888886544  33355667777888888888888888888887442  33344 77777788


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc-----------------------------
Q 015765          122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF-----------------------------  172 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------------------  172 (401)
                      ...|++++|+..++++.+.. +.+...+..+..++...+..+.|++.++..                             
T Consensus       127 ~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~  205 (765)
T PRK10049        127 KRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSE  205 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccCh
Confidence            88888888888888888765 445556666666666666666555444432                             


Q ss_pred             -----------------hhhcCCCCCHH-hH----HHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHc
Q 015765          173 -----------------PKVYGIEPNSE-TY----NKVIKSFCESGDSSSVYSILAEMRRKSIR-PNATDFGLLLAGFYK  229 (401)
Q Consensus       173 -----------------~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~  229 (401)
                                       .+.....|+.. .+    ...+..+...|++++|+..|+++.+.+.+ |+. .-..+..+|..
T Consensus       206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~  284 (765)
T PRK10049        206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLK  284 (765)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHh
Confidence                             21111112211 11    01123345667788888888887766422 222 22224667778


Q ss_pred             cCChHHHHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CcC---HHHHHH
Q 015765          230 EHKYEDVGKVLQMMEKCGIAS---GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI-----------KPN---LDTYKH  292 (401)
Q Consensus       230 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~  292 (401)
                      .|++++|+..|+.+.+.....   .......+..++...|++++|..+++.+.....           .|+   ...+..
T Consensus       285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~  364 (765)
T PRK10049        285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL  364 (765)
T ss_pred             cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence            888888888888776543111   123345556667778888888888887776521           122   123455


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015765          293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK  372 (401)
Q Consensus       293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  372 (401)
                      +...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.+++..... +.+...+...+..+...|+
T Consensus       365 ~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~  442 (765)
T PRK10049        365 LSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQE  442 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCC
Confidence            6667777888888888888877653 3446677777777888888888888888777654 3345666677777778888


Q ss_pred             HHHHHHHHHHHHhcCCCCccc
Q 015765          373 VAEANELIGLMKKRFPKSGDM  393 (401)
Q Consensus       373 ~~~a~~~~~~~~~~~~~~~~~  393 (401)
                      +++|..+++++.+..|.+..+
T Consensus       443 ~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        443 WRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHHH
Confidence            888888888888877776543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.83  E-value=3.6e-16  Score=158.17  Aligned_cols=337  Identities=9%  Similarity=-0.001  Sum_probs=243.2

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHH------------HHHHHHHHhCCCchHHHHHHHHhhhCCCCC
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAF------------SIAVSKLSQANHFNAISQLLEELKTRPDLR  108 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  108 (401)
                      .+......+...+++++|++.|+.+....+..+....|            ......+.+.|++++|++.|+++....  |
T Consensus       305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P  382 (1157)
T PRK11447        305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--N  382 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence            34445577788899999999998876432222222222            122456778999999999999998443  3


Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH------------------------------------
Q 015765          109 QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL------------------------------------  152 (401)
Q Consensus       109 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------  152 (401)
                      .+...+..+...+...|++++|++.|++..+.. +.+...+..+                                    
T Consensus       383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~  461 (1157)
T PRK11447        383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN  461 (1157)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            445677788899999999999999999988764 3333333322                                    


Q ss_pred             ------HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 015765          153 ------LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG  226 (401)
Q Consensus       153 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  226 (401)
                            ...+...|++++|++.|++..+..  +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~  538 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLY  538 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence                  233456788999999999887652  3345677788899999999999999999987653 2233333333333


Q ss_pred             HHccCChHHHHHHHHHHHHc---------------------------------------CCCCCchhHHHHHHHHHhcCC
Q 015765          227 FYKEHKYEDVGKVLQMMEKC---------------------------------------GIASGVNVYNIRIQSLCKLKR  267 (401)
Q Consensus       227 ~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~ll~~~~~~~~  267 (401)
                      +...++.++|...++.+...                                       ..+.+...+..+...+.+.|+
T Consensus       539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~  618 (1157)
T PRK11447        539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD  618 (1157)
T ss_pred             HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence            34444444444443322100                                       124455667788899999999


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      +++|+..|++..+... .+...+..+...|...|++++|.+.++...+.. +.+...+..+..++...|++++|.+++++
T Consensus       619 ~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~  696 (1157)
T PRK11447        619 YAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR  696 (1157)
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999999998743 367889999999999999999999999887642 23455667788889999999999999999


Q ss_pred             HHHCCC--CC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          348 SMAKGW--VP---HFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       348 ~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      +.....  +|   +...+..+...+...|++++|++.|++...
T Consensus       697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            887532  22   234666778889999999999999999875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=6.9e-16  Score=149.47  Aligned_cols=344  Identities=12%  Similarity=0.074  Sum_probs=255.5

Q ss_pred             HHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHH
Q 015765           40 EKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV  119 (401)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  119 (401)
                      ..+..-+.+....|+.++|++++......  .+.+...+..+...+.+.|++++|.++|++.....  |.+...+..+..
T Consensus        16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~   91 (765)
T PRK10049         16 NQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLIL   91 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            34455678889999999999999988652  23456679999999999999999999999987442  333557778888


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      .+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+..  +.+...+..+...+...+..+
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChH
Confidence            9999999999999999998874 55666 8888899999999999999999998652  334445555666665555555


Q ss_pred             HHHH----------------------------------------------HHHHHHhC-CCCCCHH-hHH----HHHHHH
Q 015765          200 SVYS----------------------------------------------ILAEMRRK-SIRPNAT-DFG----LLLAGF  227 (401)
Q Consensus       200 ~a~~----------------------------------------------~~~~~~~~-~~~~~~~-~~~----~ll~~~  227 (401)
                      .|++                                              .++.+.+. ...|+.. .+.    ..+..+
T Consensus       168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L  247 (765)
T PRK10049        168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL  247 (765)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence            4443                                              33344322 1112211 111    113345


Q ss_pred             HccCChHHHHHHHHHHHHcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHhcCCCh
Q 015765          228 YKEHKYEDVGKVLQMMEKCGIA-SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP---NLDTYKHLIHGFGKEGNL  303 (401)
Q Consensus       228 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~  303 (401)
                      ...|++++|+..|+.+.+.+.+ |+ .....+..+|...|++++|...|+++.+.....   .......+..++...|++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            6778999999999999887532 22 122335778999999999999999987653211   134566677788899999


Q ss_pred             HHHHHHHHHHHhCC-----------CCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015765          304 EGAKKLFASMTNGG-----------CEPDS---YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS  369 (401)
Q Consensus       304 ~~a~~~~~~m~~~~-----------~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (401)
                      ++|.++++.+.+..           -.|+.   ..+..+...+...|+.++|+++++++.... +.+...+..+...+..
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            99999999988652           11231   245567778889999999999999998764 5678889999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCccc
Q 015765          370 ISKVAEANELIGLMKKRFPKSGDM  393 (401)
Q Consensus       370 ~g~~~~a~~~~~~~~~~~~~~~~~  393 (401)
                      .|++++|++.+++..+..|.+...
T Consensus       406 ~g~~~~A~~~l~~al~l~Pd~~~l  429 (765)
T PRK10049        406 RGWPRAAENELKKAEVLEPRNINL  429 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCChHH
Confidence            999999999999999998887543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=1.8e-17  Score=145.14  Aligned_cols=340  Identities=14%  Similarity=0.076  Sum_probs=242.1

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIV  119 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~  119 (401)
                      .+.-....++..|+.+.|+..++.+...  .+.....|..+..++...|+.+.|.+.|.+... .|...   -+...+..
T Consensus       118 ~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~---ca~s~lgn  192 (966)
T KOG4626|consen  118 AYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLY---CARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchh---hhhcchhH
Confidence            3444557889999999999999988754  333567888899999999999998888877662 22211   12222333


Q ss_pred             HHHhcCChHHH----------------------------------HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015765          120 LYGQANMIDHA----------------------------------MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV  165 (401)
Q Consensus       120 ~~~~~~~~~~a----------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  165 (401)
                      ..-..|++++|                                  ++.|++..+.+ +.-...|..|...|...+.++.|
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHH
Confidence            33334444444                                  44444444432 11234455555555555555555


Q ss_pred             HHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015765          166 KRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME  244 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  244 (401)
                      ...|.+....   .|+ ...+..+...|...|+++.|+..|++..+.. +--...|+.+..++-..|++.+|.+.+.+..
T Consensus       272 vs~Y~rAl~l---rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  272 VSCYLRALNL---RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             HHHHHHHHhc---CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            5555554322   333 3345555555666777777777777776642 2235678888888888899999999888887


Q ss_pred             HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-H
Q 015765          245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-S  322 (401)
Q Consensus       245 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~  322 (401)
                      ... +......+.+...|...|.+++|.++|....+-  .|. ...++.|...|.+.|++++|+..|++.++  ++|+ .
T Consensus       348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA  422 (966)
T KOG4626|consen  348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA  422 (966)
T ss_pred             HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence            763 335677888888999999999999999887764  444 46788899999999999999999999887  5676 4


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          323 YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      ..|+.+...|-..|+.+.|.+.+.+++..+ +.-.+.++.|...|-..|++.+|+.-+++.++..|.-+..|-.
T Consensus       423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN  495 (966)
T KOG4626|consen  423 DALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN  495 (966)
T ss_pred             HHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH
Confidence            678899999999999999999999988764 2235678899999999999999999999999987766655543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.81  E-value=1e-15  Score=145.50  Aligned_cols=307  Identities=12%  Similarity=-0.003  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGC  156 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  156 (401)
                      .+......+.+.|++++|+..|++.....   ++...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~  204 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            35566778889999999999999988432   235688899999999999999999999999875 55678899999999


Q ss_pred             HhcCCHHHHHHHHHhchhhcCC---------------------------CC-CHHhHHHH--------------------
Q 015765          157 ILSKNYEEVKRIFTEFPKVYGI---------------------------EP-NSETYNKV--------------------  188 (401)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~~~~~---------------------------~~-~~~~~~~l--------------------  188 (401)
                      ...|++++|+..|.......+.                           .| +...+..+                    
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            9999999998766443211000                           11 10000000                    


Q ss_pred             ----------HHHH------HhcCChhHHHHHHHHHHhCC-CCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 015765          189 ----------IKSF------CESGDSSSVYSILAEMRRKS-IRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS  250 (401)
Q Consensus       189 ----------~~~~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  250 (401)
                                +..+      ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+.. +.
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~  363 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR  363 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence                      0000      11257889999999998764 223 45567888888899999999999999998864 33


Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765          251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY  330 (401)
Q Consensus       251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  330 (401)
                      ....|..+...+...|++++|...|++..+... .+...|..+...+...|++++|...|++.++.. +.+...+..+..
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~  441 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV  441 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence            456788888999999999999999999988742 357889999999999999999999999999864 335667788888


Q ss_pred             HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      .+.+.|++++|+..+++..+.. +.+...+..+..++...|++++|++.|++..+..|.+.
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~  501 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK  501 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc
Confidence            9999999999999999998763 55678899999999999999999999999998876543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=1e-16  Score=140.51  Aligned_cols=308  Identities=13%  Similarity=0.082  Sum_probs=195.5

Q ss_pred             ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH----
Q 015765           73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDA----  148 (401)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----  148 (401)
                      .-..+|..+...+-..|++++|+.+++.+.+..  +.....|..+..++...|+.+.|.+.|.+.++.+  |+...    
T Consensus       114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~  189 (966)
T KOG4626|consen  114 QGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSD  189 (966)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcc
Confidence            356789999999999999999999999998432  3335688999999999999999999999988753  43322    


Q ss_pred             -------------------------------HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcC
Q 015765          149 -------------------------------LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESG  196 (401)
Q Consensus       149 -------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  196 (401)
                                                     |..|...+-.+|+...|+..|++..+   +.|+ ...|-.|...|-..+
T Consensus       190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~  266 (966)
T KOG4626|consen  190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEAR  266 (966)
T ss_pred             hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHh
Confidence                                           22222233334444445555544442   2333 234555555555555


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015765          197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD  276 (401)
Q Consensus       197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  276 (401)
                      .+++|...|.+..... +.....+..+...|...|..|.|+..+++..+.. +.-...|+.+..++-..|++.+|.+.+.
T Consensus       267 ~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn  344 (966)
T KOG4626|consen  267 IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN  344 (966)
T ss_pred             cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence            5555555555554431 2234445555555566666666666666666543 2224567777777777777777777777


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015765          277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP  355 (401)
Q Consensus       277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  355 (401)
                      +..... .-.....+.|...|...|.++.|..+|....+-  .|. ....+.|...|-+.|++++|+..+++.+.-  .|
T Consensus       345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P  419 (966)
T KOG4626|consen  345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KP  419 (966)
T ss_pred             HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cc
Confidence            666652 113456666777777777777777777766653  333 345666777777777777777777776643  34


Q ss_pred             C-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccc
Q 015765          356 H-FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMW  394 (401)
Q Consensus       356 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  394 (401)
                      + ...|+.+...|-..|+...|.+-+.+.....|.-....
T Consensus       420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh  459 (966)
T KOG4626|consen  420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH  459 (966)
T ss_pred             hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence            3 34566677777777777777777777766655443333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=1.7e-14  Score=137.76  Aligned_cols=340  Identities=13%  Similarity=0.067  Sum_probs=211.2

Q ss_pred             HHHHhcCCChhHHHHHhhhccCCCCCCccH-hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhc
Q 015765           46 IARLKSESNPFRILDICCGASLAPESPLDR-MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA  124 (401)
Q Consensus        46 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  124 (401)
                      .-...+.|+++.|++.|..+....  |.+. ..+ .++..+...|+.++|+..+++.. .+...+ ......+...|...
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~-~~~llalA~ly~~~  115 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNIS-SRGLASAARAYRNE  115 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCC-HHHHHHHHHHHHHc
Confidence            344556777889999998887442  2221 233 77788888899999999999987 332222 33444446688888


Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 015765          125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI  204 (401)
Q Consensus       125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  204 (401)
                      |++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.+.   .|+...+..++..+...++..+|++.
T Consensus       116 gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        116 KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHH
Confidence            99999999999998876 456777778888889999999999999998754   56655554444444445566568888


Q ss_pred             HHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH---------------------------------------------
Q 015765          205 LAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV---------------------------------------------  239 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~---------------------------------------------  239 (401)
                      ++++.+.. +-+...+..+..++.+.|-...|.++                                             
T Consensus       192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a  270 (822)
T PRK14574        192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA  270 (822)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence            88887763 33444545555555444433222222                                             


Q ss_pred             ---HHHHHHc-CC-CCCchhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHH
Q 015765          240 ---LQMMEKC-GI-ASGVNVY----NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF  310 (401)
Q Consensus       240 ---~~~~~~~-~~-~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~  310 (401)
                         ++.+... +. ++....|    -=.+-++...|++.++++.|+.+...|.+....+-.++..+|...+.+++|..+|
T Consensus       271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~  350 (822)
T PRK14574        271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL  350 (822)
T ss_pred             HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence               1222111 01 1111111    1123445566777777777777776665444456666677777777777777777


Q ss_pred             HHHHhCC-----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHccC
Q 015765          311 ASMTNGG-----CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW-----------VPHF---STMKSLVTGLASIS  371 (401)
Q Consensus       311 ~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g  371 (401)
                      +.+....     ..++......|..+|...+++++|..+++++.+...           .|+.   ..+..++..+...|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g  430 (822)
T PRK14574        351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN  430 (822)
T ss_pred             HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence            7765432     112233345667777777777777777777666210           1221   22334455566677


Q ss_pred             CHHHHHHHHHHHHhcCCCCcccch
Q 015765          372 KVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       372 ~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      +..+|++.++++....|.|...+.
T Consensus       431 dl~~Ae~~le~l~~~aP~n~~l~~  454 (822)
T PRK14574        431 DLPTAQKKLEDLSSTAPANQNLRI  454 (822)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            777777777777766666665544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.77  E-value=2.3e-14  Score=136.80  Aligned_cols=338  Identities=11%  Similarity=0.057  Sum_probs=189.7

Q ss_pred             HHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh
Q 015765           44 ATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ  123 (401)
Q Consensus        44 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  123 (401)
                      ..+.++...|+.++|+..++.+. .+ .+........+...+...|++++|+++|+++....  |.+...+..++..+..
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~-~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~  148 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ-SS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQAD  148 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhh
Confidence            44566667788888888888876 22 23334444444667788888888888888887432  3334566677788888


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH---
Q 015765          124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS---  200 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---  200 (401)
                      .++.++|++.++++...  .|+...+..++..+...++..+|++.++++.+..  +-+...+..+.....+.|-...   
T Consensus       149 ~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~  224 (822)
T PRK14574        149 AGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALR  224 (822)
T ss_pred             cCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence            88888888888888765  4555555444444444555555888888876542  2223333333333333332222   


Q ss_pred             ---------------------------------------------HHHHHHHHHhC-CCCCCH-Hh----HHHHHHHHHc
Q 015765          201 ---------------------------------------------VYSILAEMRRK-SIRPNA-TD----FGLLLAGFYK  229 (401)
Q Consensus       201 ---------------------------------------------a~~~~~~~~~~-~~~~~~-~~----~~~ll~~~~~  229 (401)
                                                                   |+.-++.+... +..|.. ..    ..-.+-++..
T Consensus       225 l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~  304 (822)
T PRK14574        225 LAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV  304 (822)
T ss_pred             HHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence                                                         22222222221 111111 11    1122334555


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHHHHHHHHHHhcCCChH
Q 015765          230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG-----IKPNLDTYKHLIHGFGKEGNLE  304 (401)
Q Consensus       230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~~~~~  304 (401)
                      .|++.++++.++.+...+.+....+-..+..+|...+++++|..+++.+....     ..++......|.-+|...++++
T Consensus       305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~  384 (822)
T PRK14574        305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD  384 (822)
T ss_pred             hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence            66666666666666665544344455566666666666666666666664432     1122333455666666666666


Q ss_pred             HHHHHHHHHHhCCC-----------CCC--H-hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015765          305 GAKKLFASMTNGGC-----------EPD--S-YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI  370 (401)
Q Consensus       305 ~a~~~~~~m~~~~~-----------~~~--~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  370 (401)
                      +|..+++.+.+.-.           .||  - ..+..++..+.-.|+..+|++.++++.... +-|......+...+...
T Consensus       385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~R  463 (822)
T PRK14574        385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLAR  463 (822)
T ss_pred             HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            66666666665210           122  1 223334455556666666666666665543 44566666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCCC
Q 015765          371 SKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       371 g~~~~a~~~~~~~~~~~~~~  390 (401)
                      |.+.+|++.++......|.+
T Consensus       464 g~p~~A~~~~k~a~~l~P~~  483 (822)
T PRK14574        464 DLPRKAEQELKAVESLAPRS  483 (822)
T ss_pred             CCHHHHHHHHHHHhhhCCcc
Confidence            66666666665555544444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.75  E-value=1.1e-13  Score=135.06  Aligned_cols=306  Identities=11%  Similarity=0.011  Sum_probs=227.2

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCC---hHHHHHH----------------
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANM---IDHAMQT----------------  133 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~----------------  133 (401)
                      +......+--...+.|+.++|.++++.... .++...+......++..|.+.+.   ..++..+                
T Consensus       375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  454 (987)
T PRK09782        375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL  454 (987)
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence            444555555556788999999999998874 22222234566678888887766   3333333                


Q ss_pred             ------HH---HHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015765          134 ------FE---EMDKYGLRQ--SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY  202 (401)
Q Consensus       134 ------~~---~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  202 (401)
                            ++   ...... ++  +...|..+..++.. ++.++|...+.+....   .|+......+...+...|++++|.
T Consensus       455 ~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi  529 (987)
T PRK09782        455 PGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATAL  529 (987)
T ss_pred             hhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHH
Confidence                  11   111111 33  67777878777776 7888899988887655   566554444455556899999999


Q ss_pred             HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015765          203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG  282 (401)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  282 (401)
                      ..|+++...  +|+...+..+..++.+.|+.++|...++...+.+ +.+...+..+.....+.|++++|...+++..+. 
T Consensus       530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-  605 (987)
T PRK09782        530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-  605 (987)
T ss_pred             HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-
Confidence            999997654  4455556677788899999999999999998864 223333333444455669999999999999886 


Q ss_pred             CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015765          283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS  362 (401)
Q Consensus       283 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (401)
                       .|+...|..+..++.+.|++++|.+.+++..+.. +.+...+..+..++...|+.++|...+++..+.. +-+...+..
T Consensus       606 -~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~n  682 (987)
T PRK09782        606 -APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQ  682 (987)
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence             4578888999999999999999999999999864 3356677888889999999999999999998875 557788999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          363 LVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      +..++...|++++|...+++..+..|.+.
T Consensus       683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        683 LAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999998877654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.74  E-value=1.9e-13  Score=133.38  Aligned_cols=334  Identities=10%  Similarity=0.025  Sum_probs=249.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccC-CCCCCccHhHHHHHHHHHHhCCC---chHHHHH-------------------
Q 015765           41 KKRATIARLKSESNPFRILDICCGASL-APESPLDRMAFSIAVSKLSQANH---FNAISQL-------------------   97 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~-------------------   97 (401)
                      .+.++.-.+.++|+.++|.++++.... +++..++...-..++..+.+.+.   ..++..+                   
T Consensus       378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  457 (987)
T PRK09782        378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI  457 (987)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence            444455566677889999999998865 33344455556678888888766   3333222                   


Q ss_pred             ---HHHhh-hCCCCCC--chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 015765           98 ---LEELK-TRPDLRQ--NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTE  171 (401)
Q Consensus        98 ---~~~~~-~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  171 (401)
                         ++... ..+..+.  +...+..+..++.. +++++|...+.+....  .|+......+...+...|++++|...|++
T Consensus       458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk  534 (987)
T PRK09782        458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQK  534 (987)
T ss_pred             hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               22222 1222334  56778888877776 8999999988887766  46655444445556789999999999998


Q ss_pred             chhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 015765          172 FPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG  251 (401)
Q Consensus       172 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  251 (401)
                      +...   +|+...+..+...+.+.|++++|...+++..+.. +.+...+..+.......|++++|...+++..+..  |+
T Consensus       535 a~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~  608 (987)
T PRK09782        535 ISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PS  608 (987)
T ss_pred             Hhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CC
Confidence            8543   5666667777888999999999999999998764 3333344444445556799999999999999864  56


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765          252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF  331 (401)
Q Consensus       252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  331 (401)
                      ...+..+..++.+.|++++|...+++....... +...++.+...+...|++++|.+.+++..+.. +-+...+..+..+
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~a  686 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYV  686 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            888999999999999999999999999988432 56788888889999999999999999999863 3456788999999


Q ss_pred             HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          332 LCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       332 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      +...|++++|...+++..+.. +-+..+.........+..+++.|.+-+++....
T Consensus       687 l~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~  740 (987)
T PRK09782        687 NQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF  740 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999764 223355556666666777777777777666543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=2.4e-14  Score=120.52  Aligned_cols=307  Identities=16%  Similarity=0.202  Sum_probs=220.3

Q ss_pred             CccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 015765           72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNA  151 (401)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  151 (401)
                      |.+..+|..+|.++++--..+.|.+++++.....+ ..+..+|+.+|.+-.-    ..-.+++.+|....+.||..|+|+
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNa  278 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNA  278 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHH
Confidence            44677999999999999999999999999884433 3447788888866432    223788999999999999999999


Q ss_pred             HHHHHHhcCCHHH----HHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH-HHHHHHHHHh----CCCC----CCHH
Q 015765          152 LLLGCILSKNYEE----VKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS-VYSILAEMRR----KSIR----PNAT  218 (401)
Q Consensus       152 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~  218 (401)
                      ++.+..+.|+++.    |.+++.+| ++.|+.|...+|..+|..+++.++..+ +..++.++..    ..++    .|..
T Consensus       279 lL~c~akfg~F~~ar~aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~  357 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK  357 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence            9999999998765    56677788 677999999999999999999888754 4555555433    2222    3556


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcC----CCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCG----IASG---VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK  291 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~  291 (401)
                      .|...|..|.+..+.+.|.++..-+....    +.|+   ..-|..+..+.|+....+.....|+.|.-.-+-|+..+..
T Consensus       358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~  437 (625)
T KOG4422|consen  358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI  437 (625)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence            77888999999999988888776554321    2222   2335667778888888999999999998887788888888


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CH--------H-----HHHHH-------HHHHHH
Q 015765          292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG-EY--------E-----TALKV-------CRASMA  350 (401)
Q Consensus       292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~a~~~-------~~~~~~  350 (401)
                      .++++....|.++-.-+++.+++..|..-+...-.-++..+++.. ..        .     -|..+       -.++.+
T Consensus       438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~  517 (625)
T KOG4422|consen  438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA  517 (625)
T ss_pred             HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            999998888999888888888887775444444444444444332 10        0     01111       122333


Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          351 KGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       351 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      ..  ......+..+-.+.+.|+.++|.+++..+.++
T Consensus       518 ~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~  551 (625)
T KOG4422|consen  518 QD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRK  551 (625)
T ss_pred             cc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence            33  33445666666777888888888888877554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.74  E-value=5e-14  Score=126.24  Aligned_cols=285  Identities=13%  Similarity=0.089  Sum_probs=216.7

Q ss_pred             CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 015765           88 ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN--ALLLGCILSKNYEEV  165 (401)
Q Consensus        88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a  165 (401)
                      .|+++.|.+.+.......+.+.  -.+........+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPV--VNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            6999999988887654433222  22333344557899999999999999875  45543332  336788899999999


Q ss_pred             HHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHccCChHHHHH
Q 015765          166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA-------TDFGLLLAGFYKEHKYEDVGK  238 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~  238 (401)
                      .+.++++.+..  +-+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...+
T Consensus       173 l~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        173 RHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999997653  445677888999999999999999999999987654322       133334444444555666667


Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015765          239 VLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC  318 (401)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  318 (401)
                      +++.+.+. .+.+......+...+...|+.++|.+++++..+.  .|+....  ++.+....++.+++.+..+...+.. 
T Consensus       251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-  324 (398)
T PRK10747        251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-  324 (398)
T ss_pred             HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence            77766443 3457778888999999999999999999999885  4454322  3444456699999999999988763 


Q ss_pred             CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          319 EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      +-|...+..+...|.+.|++++|.+.|+.+.+.  .|+...+..+..++.+.|+.++|.+++++....
T Consensus       325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345566888999999999999999999999976  689999999999999999999999999988654

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=6e-14  Score=126.45  Aligned_cols=292  Identities=12%  Similarity=0.012  Sum_probs=212.0

Q ss_pred             HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015765           86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV  165 (401)
Q Consensus        86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  165 (401)
                      ...|+++.|.+.+.........+  ...+-....++...|+++.|.+.+.+..+....+.....-.....+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~--~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEP--VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            46799999999998876433211  3344455677788899999999999987653222223444457888899999999


Q ss_pred             HHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHH---HccCChHHHHHHHH
Q 015765          166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFG-LLLAGF---YKEHKYEDVGKVLQ  241 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~  241 (401)
                      .+.++.+.+..  +-+......+...+.+.|++++|.+.+..+.+.+.. +...+. .-..++   ...+..+++.+.+.
T Consensus       173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999997663  445667889999999999999999999999988754 333332 111211   22233333334454


Q ss_pred             HHHHcCC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH---HHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765          242 MMEKCGI---ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT---YKHLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       242 ~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                      .+.+...   +.+...+..+...+...|+.++|.+++++..+..  ||...   ...........++.+.+.+.++...+
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            4444321   2377888889999999999999999999999873  34331   11122223345788889999988876


Q ss_pred             CCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          316 GGCEPDS---YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       316 ~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      .  .|+.   ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++....
T Consensus       328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5  4443   4567889999999999999999996555455789999999999999999999999999987654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.71  E-value=5.4e-17  Score=139.06  Aligned_cols=185  Identities=14%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCCHHHHH
Q 015765          194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIRIQSLCKLKRSEEAK  272 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~  272 (401)
                      ..+++++|.+++....+.  .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.
T Consensus        89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  166 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL  166 (280)
T ss_dssp             -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred             cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            444444444444433222  1233333444444444444444444444443221 1233444444455555555555555


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          273 ALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       273 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      +.+++..+.... |......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|..++++..+..
T Consensus       167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence            555555544211 24444455555555555555555554444332 2333344455555555555555555555555432


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          353 WVPHFSTMKSLVTGLASISKVAEANELIGLM  383 (401)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  383 (401)
                       +.|+.+...+..++...|+.++|.++..+.
T Consensus       245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  245 -PDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             -TT-HHHHHHHHHHHT---------------
T ss_pred             -cccccccccccccccccccccccccccccc
Confidence             334555555555555555555555555444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.70  E-value=2.4e-16  Score=135.07  Aligned_cols=259  Identities=13%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      ...+.+.|++++|.++++........+.+..++..+...+...++++.|.+.++++...+ +-+...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence            444445555555555553322111112223344444444444555555555555554443 2233344444444 34455


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHHHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVGKVL  240 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~  240 (401)
                      +++|.+++....+.   .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus        93 ~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   93 PEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55555554443322   2333344444444555555555555555543321 2234444444445555555555555555


Q ss_pred             HHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015765          241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP  320 (401)
Q Consensus       241 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  320 (401)
                      ++..+.. +.+....+.++..+...|+.+++..+++...+.. ..|...+..+..+|...|+.++|..++++..+.. +.
T Consensus       170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~  246 (280)
T PF13429_consen  170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD  246 (280)
T ss_dssp             HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence            5554442 2234444445555555555555444444444332 2233334444555555555555555555544431 22


Q ss_pred             CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          321 DSYCFFMFTYFLCQGGEYETALKVCRAS  348 (401)
Q Consensus       321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~  348 (401)
                      |......+..++...|+.++|.++.+++
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             -HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            4444444555555555555555554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.70  E-value=2.3e-13  Score=122.01  Aligned_cols=287  Identities=12%  Similarity=0.070  Sum_probs=219.5

Q ss_pred             CCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHH
Q 015765           52 ESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAM  131 (401)
Q Consensus        52 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  131 (401)
                      .|+++.|.+.+.......+.  ....|.....+..+.|+++.|.+.++++........ ..........+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-LPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHCCCHHHHH
Confidence            68999999888765443222  123344445566899999999999999884332111 112223367888999999999


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH------HhHHHHHHHHHhcCChhHHHHHH
Q 015765          132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS------ETYNKVIKSFCESGDSSSVYSIL  205 (401)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~  205 (401)
                      +.++++.+.. +-+......+...|.+.|++++|.+++..+.+.....++.      .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999887 6678889999999999999999999999997653332221      12333444444555667777777


Q ss_pred             HHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 015765          206 AEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP  285 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  285 (401)
                      +.+.+. .+.+......+...+...|+.++|.+++++..+.  +++..  -.++.+....++.+++.+..+...+... -
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P-~  326 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHG-D  326 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCC-C
Confidence            776543 3557888899999999999999999999999884  44442  2234445566999999999999988742 2


Q ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      |...+..+.+.|.+.+++++|.+.|+...+.  .|+...+..+...+.+.|+.++|.+++++...
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5677889999999999999999999999985  69999999999999999999999999998754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=8.4e-13  Score=107.45  Aligned_cols=288  Identities=10%  Similarity=0.087  Sum_probs=189.6

Q ss_pred             hCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHhcC
Q 015765           87 QANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS------VDALNALLLGCILSK  160 (401)
Q Consensus        87 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~  160 (401)
                      -+++.++|+++|-+|... + +....+..++...|.+.|..|.|+++.+.+.+.   ||      ....-.|..-|...|
T Consensus        47 Ls~Q~dKAvdlF~e~l~~-d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG  121 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQE-D-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG  121 (389)
T ss_pred             hhcCcchHHHHHHHHHhc-C-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence            356677777777777732 2 222556667777777888888888887777653   33      223344556677778


Q ss_pred             CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChHHH
Q 015765          161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA----TDFGLLLAGFYKEHKYEDV  236 (401)
Q Consensus       161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a  236 (401)
                      -++.|+++|..+.++.  ..-..+...|+..|-...+|++|+++-+++.+.+-.+..    ..|.-+...+....+.+.|
T Consensus       122 l~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A  199 (389)
T COG2956         122 LLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA  199 (389)
T ss_pred             hhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence            8888888887776532  223445667777787888888888887777776544332    2344555556666777888


Q ss_pred             HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                      ...+.+..+.+ +..+..--.+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+.
T Consensus       200 ~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         200 RELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            88888777664 23444444556777778888888888888887754444566777888888888888888888887765


Q ss_pred             CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhc
Q 015765          317 GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS---ISKVAEANELIGLMKKR  386 (401)
Q Consensus       317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~  386 (401)
                      .  ++...-..+........-.+.|..++.+-...  .|+...+..++..-..   .|...+...++.+|...
T Consensus       279 ~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         279 N--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             c--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            3  44444445555555555666676666665554  5788888888776543   34556666666666543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.67  E-value=1.3e-12  Score=119.79  Aligned_cols=337  Identities=12%  Similarity=0.115  Sum_probs=259.7

Q ss_pred             hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHH
Q 015765           39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSI  118 (401)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  118 (401)
                      .+.+..+-.++.+ |+.+.|.+++.+..+.  .|.....|..+...|-..|+.+++...+-.....  .|.|...|..+.
T Consensus       140 ~~ll~eAN~lfar-g~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~la  214 (895)
T KOG2076|consen  140 RQLLGEANNLFAR-GDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLA  214 (895)
T ss_pred             HHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence            4456666666666 8999999999999876  5567889999999999999999999887666532  244457899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH----hHHHHHHHHHh
Q 015765          119 VLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE----TYNKVIKSFCE  194 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~  194 (401)
                      ....+.|+++.|.-.|.+.++.. +++....---...|-+.|+...|.+-|.++....+ +.|..    ....+++.+..
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~  292 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFIT  292 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986 56666666677889999999999999999976531 12222    22345666777


Q ss_pred             cCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC--------------------------
Q 015765          195 SGDSSSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG--------------------------  247 (401)
Q Consensus       195 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------------  247 (401)
                      .++-+.|.+.++...+.+ -..+...++.++..+.+...++.+......+....                          
T Consensus       293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~  372 (895)
T KOG2076|consen  293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK  372 (895)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence            787899999998886632 34456678888999999999999988777665511                          


Q ss_pred             -CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhh
Q 015765          248 -IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG--IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYC  324 (401)
Q Consensus       248 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  324 (401)
                       +.++..++ -++-++...+..+....+...+.+..  +.-+...|.-+..+|...|++.+|+.+|..+......-+...
T Consensus       373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v  451 (895)
T KOG2076|consen  373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV  451 (895)
T ss_pred             CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence             12222221 12233444455555555555566655  333567888999999999999999999999998765667889


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      |-.+..+|...|.+++|.+.+++.+... +.+...-..|...+.+.|+.++|.+.++.+.
T Consensus       452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999999999999999999999875 4566777888899999999999999999875

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=3.9e-13  Score=109.38  Aligned_cols=293  Identities=14%  Similarity=0.145  Sum_probs=222.1

Q ss_pred             CCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhH--HHHHHHHHHhcCChHH
Q 015765           52 ESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERF--HVHSIVLYGQANMIDH  129 (401)
Q Consensus        52 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~  129 (401)
                      .+++++|.++|-++...  .+-+..+.-++.+.|.+.|..+.|+.+.+.+...|+.+.+...  ...+..-|...|-+|.
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            35689999999988764  4446677788889999999999999999999988887764433  3455677899999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH---hHHHHHHHHHhcCChhHHHHHHH
Q 015765          130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE---TYNKVIKSFCESGDSSSVYSILA  206 (401)
Q Consensus       130 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~  206 (401)
                      |+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+..+-+.+..   .|.-+...+....+.+.|..++.
T Consensus       126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999999866 45667788899999999999999999998865432222221   24455556666789999999999


Q ss_pred             HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015765          207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN  286 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  286 (401)
                      +..+.. +.....--.+.+.....|++..|.+.++.+.+.+..--..+...+..+|...|+.++....+..+.+...  +
T Consensus       205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g  281 (389)
T COG2956         205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G  281 (389)
T ss_pred             HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence            988763 2234444456688899999999999999999987555567788999999999999999999999988743  3


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCC
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ---GGEYETALKVCRASMAKG  352 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~  352 (401)
                      ...-..+-..-....-.+.|..++.+-+..  +|+...+..+|..-..   .|...+-...++.|....
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~  348 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ  348 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence            333344444444445556666666555543  7999999999987643   455677777777777653

>TIGR00540 hemY_coli hemY protein

Probab=99.66  E-value=8.7e-13  Score=118.94  Aligned_cols=292  Identities=12%  Similarity=0.031  Sum_probs=210.3

Q ss_pred             HhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChH
Q 015765           49 LKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMID  128 (401)
Q Consensus        49 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  128 (401)
                      ....|+++.|.+.+.......+  -....+-....+....|+++.|.+.++.......... ..+.......+...|+++
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRILLAQNELH  170 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHHHHCCCHH
Confidence            3567899999999877654321  1234455556788889999999999999873321111 123344578888999999


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH-HHHH---HHHhcCChhHHHHH
Q 015765          129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN-KVIK---SFCESGDSSSVYSI  204 (401)
Q Consensus       129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~  204 (401)
                      .|...++.+.+.. +.+..++..+...+...|++++|.+++..+.+. ++. +...+. .-..   .....+..++..+.
T Consensus       171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~  247 (409)
T TIGR00540       171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDG  247 (409)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999986 567888999999999999999999999999655 332 322221 1111   12333333333445


Q ss_pred             HHHHHhCC---CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHH
Q 015765          205 LAEMRRKS---IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV---YNIRIQSLCKLKRSEEAKALLDGM  278 (401)
Q Consensus       205 ~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~  278 (401)
                      +..+.+..   .+.+...+..+...+...|+.++|.+++++..+..  |+...   ...........++.+.+.+.++..
T Consensus       248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~  325 (409)
T TIGR00540       248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ  325 (409)
T ss_pred             HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence            55444331   12378888899999999999999999999998864  33321   122222234457888999999888


Q ss_pred             HHCCCCc-CH--HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          279 LSRGIKP-NL--DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       279 ~~~~~~p-~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      .+.  .| |.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       326 lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       326 AKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            776  33 34  566788999999999999999999544434579999999999999999999999999998644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=2.3e-12  Score=108.88  Aligned_cols=254  Identities=15%  Similarity=0.189  Sum_probs=135.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                      ..++..+|.+.++--..+.|.+++++..+...+.+..+||.+|.+-.-..+    .+++.+|..+ .+.||..|+|++++
T Consensus       207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km~Pnl~TfNalL~  281 (625)
T KOG4422|consen  207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KMTPNLFTFNALLS  281 (625)
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hcCCchHhHHHHHH
Confidence            345666666666666666666666666555555666666666554332222    4455555433 55666666666666


Q ss_pred             HHHhcCChhH----HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH-HHHHHHHHH----cCCCC----CchhHHH
Q 015765          191 SFCESGDSSS----VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV-GKVLQMMEK----CGIAS----GVNVYNI  257 (401)
Q Consensus       191 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~----~~~~~----~~~~~~~  257 (401)
                      +..+.|+++.    |.+++.+|.+.|+.|...+|..+|..+++.++..+. ..++..+..    +.++|    +...|..
T Consensus       282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~  361 (625)
T KOG4422|consen  282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS  361 (625)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence            6666665443    445556666666666666666666666666655432 222222221    11221    2344455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCC----CCcC---HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRG----IKPN---LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY  330 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~----~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  330 (401)
                      .+..|.+..+.+.|.++-.-+....    +.|+   ..-|..+....|+....+.-...|+.|+-.-.-|+..+...+++
T Consensus       362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr  441 (625)
T KOG4422|consen  362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR  441 (625)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence            5555556666666665554443221    1222   12233444455555556666666666665544556666666666


Q ss_pred             HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015765          331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS  369 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (401)
                      +....|.++-.-++|..++..|...+.....-++..+++
T Consensus       442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~  480 (625)
T KOG4422|consen  442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR  480 (625)
T ss_pred             HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence            666666666666666666665544444444444444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.62  E-value=1.5e-11  Score=103.24  Aligned_cols=295  Identities=12%  Similarity=0.105  Sum_probs=229.7

Q ss_pred             HHHHHHH--hCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015765           80 IAVSKLS--QANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI  157 (401)
Q Consensus        80 ~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  157 (401)
                      .+.++..  ..|+|.+|+++..+-.+.+..|  .-.|...+.+.-..|+.+.+-.++.+..+.--.++....-.......
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll  164 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL  164 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            3444443  3699999999998866444333  34455556777788999999999999988633566777777888899


Q ss_pred             hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHcc
Q 015765          158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA-------TDFGLLLAGFYKE  230 (401)
Q Consensus       158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~  230 (401)
                      ..|+.+.|..-++++.+..  +-+.........+|.+.|++.....++.+|.+.|.-.+.       .+|..+++-....
T Consensus       165 ~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~  242 (400)
T COG3071         165 NRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD  242 (400)
T ss_pred             hCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999998886542  556677889999999999999999999999999866554       4577777777777


Q ss_pred             CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHH
Q 015765          231 HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF  310 (401)
Q Consensus       231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~  310 (401)
                      +..+.-...++..... ...+...-..++.-+.++|+.++|.++.++..+++..|+   ... .-.+.+-++.+.-.+..
T Consensus       243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~  317 (400)
T COG3071         243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAA  317 (400)
T ss_pred             ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHH
Confidence            7777766677666443 344566677888889999999999999999999876655   222 23445777888777777


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      +.-.+.. +.++..+..+...|.+.+.+.+|...|+...+.  .|+..+|..+..++.+.|+.++|.++.++..-.
T Consensus       318 e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         318 EKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            7665441 334478889999999999999999999987766  689999999999999999999999999987754

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=4e-13  Score=119.39  Aligned_cols=265  Identities=12%  Similarity=0.010  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhchhhcCCCCCHHhHHHH
Q 015765          112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYG--LRQSVDALNALLLGCILSKNY-EEVKRIFTEFPKVYGIEPNSETYNKV  188 (401)
Q Consensus       112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l  188 (401)
                      .+...+..+|...+++++|.++|+.+.+..  ..-+..+|.+.+..+-+.-.. -.|.++.+..      +-...+|.++
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~------~~sPesWca~  427 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD------PNSPESWCAL  427 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC------CCCcHHHHHh
Confidence            445555555666666666666665554432  012344455444433211100 0112222111      2234456666


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015765          189 IKSFCESGDSSSVYSILAEMRRKSIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR  267 (401)
Q Consensus       189 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  267 (401)
                      .++|.-+++.+.|++.|++..+.  .| ...+|+.+..-+.....+|+|...|+...... +.+-..|.-+...|.+.++
T Consensus       428 GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek  504 (638)
T KOG1126|consen  428 GNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEK  504 (638)
T ss_pred             cchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccch
Confidence            66666666666666666555443  22 44555555555555555666666655554431 1112223334445555666


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      ++.|+-.|++..+-+.. +.+....+...+.+.|+.++|++++++....+ ..|+..-...+..+...+++++|.+.+++
T Consensus       505 ~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             hhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence            66666666555554322 34444445555555566666666666555443 22233333334444455566666666665


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765          348 SMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  388 (401)
                      +++. ++.+..++..+...|.+.|+.+.|+.-|.-+.+..|
T Consensus       583 Lk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  583 LKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            5543 233334455555556566666666655555555444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=2.2e-11  Score=102.25  Aligned_cols=292  Identities=12%  Similarity=0.062  Sum_probs=234.3

Q ss_pred             cCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHH
Q 015765           51 SESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHA  130 (401)
Q Consensus        51 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  130 (401)
                      ..|++.+|..+........+.  ....|...+.+....|+.+.+-.++.+..+.++... ....-+........|+++.|
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~-l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT-LAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHhCCCchhH
Confidence            467999999998887655432  345677778888999999999999999986644444 56677778889999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH-------HhHHHHHHHHHhcCChhHHHH
Q 015765          131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS-------ETYNKVIKSFCESGDSSSVYS  203 (401)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~  203 (401)
                      ..-++++.+.+ +.++........+|.+.|++.....++.++.+. +.-.|.       .+|..+++-....+..+.-..
T Consensus       173 ~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~  250 (400)
T COG3071         173 RENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT  250 (400)
T ss_pred             HHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            99999999887 667888999999999999999999999999665 544443       467788887777777777777


Q ss_pred             HHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015765          204 ILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI  283 (401)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  283 (401)
                      .+++.... .+-+...-..++.-+.+.|+.++|.++.++..+.+..|+    -...-.+.+-++.+.-.+..++-.+. .
T Consensus       251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h  324 (400)
T COG3071         251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-H  324 (400)
T ss_pred             HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-C
Confidence            78776544 455677777888889999999999999999998877665    12223455678888877777776655 2


Q ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015765          284 KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP  355 (401)
Q Consensus       284 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  355 (401)
                      +-++..+.+|...|.+.+.+.+|.+.|+...+.  .|+..+|+.+..++.+.|+..+|.++.++....-.+|
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence            224578899999999999999999999988775  7999999999999999999999999999877543333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=8.3e-13  Score=117.45  Aligned_cols=284  Identities=12%  Similarity=0.040  Sum_probs=221.2

Q ss_pred             ChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHH
Q 015765           54 NPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQ  132 (401)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  132 (401)
                      ..++|+..|......  +..+......+..+|-..+++++|..+|+.+. ..|-...+..+|.+.+-..-+    +-++.
T Consensus       334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls  407 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS  407 (638)
T ss_pred             HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence            567888888874332  44455778888899999999999999999998 455566667888887755432    22333


Q ss_pred             HH-HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765          133 TF-EEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       133 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                      ++ +.+.+.. +..+.+|.++.++|.-+++.+.|++.|++..+-   .| ...+|+.+.+-+.....+|.|...|+..+.
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG  483 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence            33 3344433 567899999999999999999999999998744   55 678899999999999999999999998765


Q ss_pred             CCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 015765          211 KSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTY  290 (401)
Q Consensus       211 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  290 (401)
                      .. +.+-..|--+...|.+.++++.|+-.|+++.+.+ +.+.+....+...+-+.|+.++|++++++......+ |+..-
T Consensus       484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~  560 (638)
T KOG1126|consen  484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK  560 (638)
T ss_pred             CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence            31 1233345556788999999999999999999876 446666777788888999999999999999887655 55555


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          291 KHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      ...+..+...+++++|++.++++.+.  .|+ ...|..+...|-+.|+.+.|+.-|.-+.+..
T Consensus       561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            55566777889999999999999985  555 5567888889999999999999998888664

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.58  E-value=2.8e-11  Score=111.35  Aligned_cols=339  Identities=14%  Similarity=0.112  Sum_probs=257.3

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      ++..+-..+.+.|+.++++..+-.+..-  .|.|...|..+.....+.|.+++|.-.|.+..+..  |++...+-.-+..
T Consensus       175 ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L  250 (895)
T KOG2076|consen  175 AYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSL  250 (895)
T ss_pred             hHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHH
Confidence            5666778888999999998876554322  34466899999999999999999999999998543  4445667777888


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNA----LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG  196 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  196 (401)
                      |-+.|+...|..-|.++.....+.|..-+..    .+..+...++-+.|.+.++......+-..+...+++++..+.+..
T Consensus       251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~  330 (895)
T KOG2076|consen  251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK  330 (895)
T ss_pred             HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH
Confidence            9999999999999999998753333332333    355566777779999999888775555666778999999999999


Q ss_pred             ChhHHHHHHHHHHhCCCCC---------------------------CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC-
Q 015765          197 DSSSVYSILAEMRRKSIRP---------------------------NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI-  248 (401)
Q Consensus       197 ~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-  248 (401)
                      .++.+......+......+                           +..++ -++-++.+.+..+....+...+.+.+. 
T Consensus       331 q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~  409 (895)
T KOG2076|consen  331 QSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVW  409 (895)
T ss_pred             HHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCC
Confidence            9999999988887622222                           22221 222334455555556666666666653 


Q ss_pred             -CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 015765          249 -ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM  327 (401)
Q Consensus       249 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  327 (401)
                       .-+...|.-+..+|...|++.+|.++|..+......-+...|-.+.++|...|.+++|.+.|...+... +-+...-..
T Consensus       410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~  488 (895)
T KOG2076|consen  410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARIT  488 (895)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhh
Confidence             335677888999999999999999999999987555568899999999999999999999999999753 223445667


Q ss_pred             HHHHHHccCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          328 FTYFLCQGGEYETALKVCRASM--------AKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       328 li~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      |...+.+.|+.++|.+.+..+.        ..++.|+..........+...|+.++=..+...|+.
T Consensus       489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD  554 (895)
T ss_pred             HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            7788899999999999999843        335677778888888999999998886666555544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.58  E-value=6.7e-11  Score=105.24  Aligned_cols=341  Identities=12%  Similarity=0.043  Sum_probs=232.5

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS  117 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  117 (401)
                      ....+..+..+-+..|..+....+|..+...  .|.....|-......-..|+...|..++.......  +.+..++...
T Consensus       549 k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaa  624 (913)
T KOG0495|consen  549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAA  624 (913)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence            3445666666666777667666666666544  44445566666666666777777777777766332  2346677777


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESG  196 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  196 (401)
                      +..-.....++.|..+|.+....  .|+..+|.--+..---.++.++|.+++++..+.   -|+ ...|-.+.+.+-+.+
T Consensus       625 vKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~  699 (913)
T KOG0495|consen  625 VKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQME  699 (913)
T ss_pred             HHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHH
Confidence            77777777777777777776654  466666666666666667777777777777665   333 334566666677777


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015765          197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD  276 (401)
Q Consensus       197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  276 (401)
                      +++.|.+.|..=.+. ++-....|..+.+.=-+.|.+-.|..+++...-.+ +.+...|-..|.+-.+.|+.+.|..++.
T Consensus       700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence            777777777654433 34445556666666666777777777777776665 4466777777777777777777777777


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 015765          277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH  356 (401)
Q Consensus       277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  356 (401)
                      +..+. ++.+...|..-|....+.++-......+++     ..-|+.....+...+....++++|.+.|.+..+.+ +.+
T Consensus       778 kALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~  850 (913)
T KOG0495|consen  778 KALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN  850 (913)
T ss_pred             HHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence            76665 343556666666665555554444333322     34566777788888888999999999999999876 445


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          357 FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       357 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      -.+|..+...+..+|.-++-.++++....-.|.....|-+
T Consensus       851 GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a  890 (913)
T KOG0495|consen  851 GDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA  890 (913)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence            6788888899999999999999999988888887777754

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.56  E-value=2.4e-10  Score=101.75  Aligned_cols=348  Identities=12%  Similarity=0.040  Sum_probs=279.8

Q ss_pred             HHHHHHHHHHhcCCChhHHHHHhhhcc---CCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCC-CCchhHHH
Q 015765           40 EKKRATIARLKSESNPFRILDICCGAS---LAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDL-RQNERFHV  115 (401)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  115 (401)
                      ..+-.+..+-..+|+.+....+++...   ...++..+...|-.-...|-..|..-.+..+......-+.- .....++.
T Consensus       441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~  520 (913)
T KOG0495|consen  441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL  520 (913)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence            455566666777777777777766543   33467788888888888888889988888888877722211 11245777


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      .-...|.+.+.++-|..+|...++.- +-+...|......=-..|..+....+|++....  ++.....|-.....+...
T Consensus       521 ~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~a  597 (913)
T KOG0495|consen  521 DDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKA  597 (913)
T ss_pred             hhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhc
Confidence            78888999999999999999988764 556777877777667788999999999998764  245556677777888889


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL  275 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  275 (401)
                      |++..|..++....+.. +-+...|..-+..-....+++.|..+|.+....  .++..+|.--+...--.++.++|.+++
T Consensus       598 gdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll  674 (913)
T KOG0495|consen  598 GDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL  674 (913)
T ss_pred             CCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence            99999999999988763 447788999999999999999999999998775  567777877777777789999999999


Q ss_pred             HHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 015765          276 DGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV  354 (401)
Q Consensus       276 ~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  354 (401)
                      ++..+.  -|+ ...|..+.+.+.+.++++.|.+.|..-.+. ++-....|..+...-.+.|.+-+|..++++..-.+ +
T Consensus       675 Ee~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P  750 (913)
T KOG0495|consen  675 EEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P  750 (913)
T ss_pred             HHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence            988886  445 467888888999999999999998776654 33445678888888888999999999999988876 5


Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765          355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       355 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  397 (401)
                      -+...|...|+.-.+.|+.+.|..++.+.++..|.+...|..-
T Consensus       751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa  793 (913)
T KOG0495|consen  751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA  793 (913)
T ss_pred             CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence            6888999999999999999999999999999999999998754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2.5e-11  Score=103.63  Aligned_cols=200  Identities=11%  Similarity=0.024  Sum_probs=157.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015765          182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS  261 (401)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  261 (401)
                      ..|+.++.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|....+...|.+-++..++.+ +.|-..|-.+.++
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa  407 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA  407 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence            3456667777778888899999999988764 3456778888888999999999999999998875 5578889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 015765          262 LCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       262 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  341 (401)
                      |.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|.+.|......| ..+...+..+.+.|-+.++.++|
T Consensus       408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence            999999999999999888763 3367899999999999999999999999988776 44667889999999999999999


Q ss_pred             HHHHHHHHHC----CC-CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          342 LKVCRASMAK----GW-VP-HFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       342 ~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      .+.+++.++.    |. .| .......|..-+.+.+++++|..+......
T Consensus       486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            9988876653    32 22 223334466667778888887776655543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.5e-10  Score=98.99  Aligned_cols=259  Identities=12%  Similarity=0.103  Sum_probs=195.9

Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCC-CCHHhHHHHHHHHHhcCCh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIE-PNSETYNKVIKSFCESGDS  198 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  198 (401)
                      ++....+.+++.+-.+.....|++.+...-+-...+.....++++|+.+|+++.+..... -|..+|..++-.  +..+ 
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~-  312 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK-  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh-
Confidence            344455666777777777777766555555555555666778888888888886642111 134455554432  2221 


Q ss_pred             hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015765          199 SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGM  278 (401)
Q Consensus       199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  278 (401)
                       ..+.++-+-...--+--+.|...+.+-|.-.++.++|...|+...+.+ +.....|+.+..-|...++...|..-++..
T Consensus       313 -skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  313 -SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             -HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence             112222211111113345677777888888899999999999999986 446788999999999999999999999999


Q ss_pred             HHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 015765          279 LSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFS  358 (401)
Q Consensus       279 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  358 (401)
                      .+-. +-|-..|..|.++|.-.+.+.-|+-+|++..+.. +.|...|..|..+|.+.++.++|++.|.+....| ..+..
T Consensus       391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~  467 (559)
T KOG1155|consen  391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS  467 (559)
T ss_pred             HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence            9875 3488999999999999999999999999999863 4478899999999999999999999999999887 44668


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          359 TMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      .+..|.+.|-+.++.++|...+++.++.
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            8999999999999999999999988774

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.52  E-value=3.4e-11  Score=111.63  Aligned_cols=328  Identities=13%  Similarity=0.076  Sum_probs=233.7

Q ss_pred             hhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh----hCCCCCCchhHHHHHHHHHHhcCChHHH
Q 015765           55 PFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK----TRPDLRQNERFHVHSIVLYGQANMIDHA  130 (401)
Q Consensus        55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a  130 (401)
                      .+.|..++......  .+.|...|-.+...+-...- ..++..|....    ......| ..+.+.+...+...|++..|
T Consensus       396 ~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip-~E~LNNvaslhf~~g~~~~A  471 (1018)
T KOG2002|consen  396 RDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIP-PEVLNNVASLHFRLGNIEKA  471 (1018)
T ss_pred             HHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCC-HHHHHhHHHHHHHhcChHHH
Confidence            35666666665544  34577777777666654443 33366665544    2233333 67888888888899999999


Q ss_pred             HHHHHHHhhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh-HHHHHHHHHhcCChhH
Q 015765          131 MQTFEEMDKY---GLRQSV------DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET-YNKVIKSFCESGDSSS  200 (401)
Q Consensus       131 ~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~  200 (401)
                      ...|......   ...++.      .+-..+..++-..++.+.|.+.|..+.+.   .|+-+. |--++......+...+
T Consensus       472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~e  548 (1018)
T KOG2002|consen  472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYE  548 (1018)
T ss_pred             HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHH
Confidence            9988887654   112222      12333555556667888999999988876   455433 3333333334567888


Q ss_pred             HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHh------------cCC
Q 015765          201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIRIQSLCK------------LKR  267 (401)
Q Consensus       201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~------------~~~  267 (401)
                      |...+....... ..+...++.+...+.+..++..|.+-|....+.- ..+|+.+.-.|...|.+            .+.
T Consensus       549 a~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~  627 (1018)
T KOG2002|consen  549 ASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH  627 (1018)
T ss_pred             HHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence            888888887653 4466677777778888888888888776665432 22455544445454432            245


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      .++|+.+|.++.+...+ |...-|-+.-.++..|++..|..+|.+..+.. .-...+|..+..+|...|++..|+++|+.
T Consensus       628 ~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~  705 (1018)
T KOG2002|consen  628 QEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYEN  705 (1018)
T ss_pred             HHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence            77899999999887543 77777888888899999999999999999875 23456888999999999999999999998


Q ss_pred             HHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcc
Q 015765          348 SMAK-GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGD  392 (401)
Q Consensus       348 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  392 (401)
                      ..+. .-..++.+...|.+++.+.|.+.+|.+.+...+...|.|..
T Consensus       706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~  751 (1018)
T KOG2002|consen  706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS  751 (1018)
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence            7665 44568889999999999999999999999999988887754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=1.4e-11  Score=104.97  Aligned_cols=197  Identities=12%  Similarity=0.052  Sum_probs=152.2

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 015765          195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL  274 (401)
Q Consensus       195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  274 (401)
                      .|++++|.+.|.+.....-.-....|+. .-.+-..|+.++|+..|-++... +..+..+...+...|....+...|+++
T Consensus       503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~  580 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL  580 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence            5677888888888776532222223332 23456778899999888877554 234667777888888888999999998


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 015765          275 LDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV  354 (401)
Q Consensus       275 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  354 (401)
                      +.+.... ++.|+.....|...|-+.|+-..|.+.+-+--+- ++-|..+...|...|....-+++++.+|++..  -+.
T Consensus       581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liq  656 (840)
T KOG2003|consen  581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQ  656 (840)
T ss_pred             HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcC
Confidence            8777655 4557888999999999999999999887654433 45678888888889999999999999999765  357


Q ss_pred             CCHHHHHHHHHHH-HccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765          355 PHFSTMKSLVTGL-ASISKVAEANELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       355 ~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  397 (401)
                      |+..-|..++..| .+.|++.+|.+++++..+++|.|......|
T Consensus       657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl  700 (840)
T KOG2003|consen  657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL  700 (840)
T ss_pred             ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence            9999999888766 568999999999999999999998766554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.51  E-value=3.3e-11  Score=100.51  Aligned_cols=200  Identities=12%  Similarity=0.078  Sum_probs=124.8

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 015765          183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL  262 (401)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  262 (401)
                      ..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            345555556666666666666666655432 2234455555666666666666666666665543 22344555566666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 015765          263 CKLKRSEEAKALLDGMLSRGIK-PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       263 ~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  341 (401)
                      ...|++++|.+.+++....... .....+..+...+...|++++|.+.+.+..+.. +.+...+..+...+...|++++|
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence            6667777777777666654211 123455556666777777777777777776643 22345666777777777888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      ...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            8777777665 2445566666777777778888887777776554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.51  E-value=9.8e-12  Score=101.52  Aligned_cols=238  Identities=11%  Similarity=0.057  Sum_probs=196.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 015765          145 SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLL  224 (401)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  224 (401)
                      |..--+-+..+|.+.|.+.+|++.++.-.++   .|-+.||-.|-+.|.+..++..|+.+|.+-.+. ++-|+....-+.
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A  297 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA  297 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence            3333456788999999999999999988776   788889999999999999999999999988765 344444455667


Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChH
Q 015765          225 AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE  304 (401)
Q Consensus       225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~  304 (401)
                      +.+-..++.+++.++++...+.. +.++.....+...|.-.++++.|.++++++.+.|+. +...|+.+.-+|.-.+.++
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence            78888899999999999998864 446666777778888899999999999999999976 7888888888888999999


Q ss_pred             HHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015765          305 GAKKLFASMTNGGCEPD--SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGL  382 (401)
Q Consensus       305 ~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  382 (401)
                      -++.-|.+....--.|+  ...|-.+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..+++.
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~  454 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA  454 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence            99999998886543444  3467777777788999999999999888775 45678899888888899999999999999


Q ss_pred             HHhcCCC
Q 015765          383 MKKRFPK  389 (401)
Q Consensus       383 ~~~~~~~  389 (401)
                      .....|.
T Consensus       455 A~s~~P~  461 (478)
T KOG1129|consen  455 AKSVMPD  461 (478)
T ss_pred             hhhhCcc
Confidence            8877654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.51  E-value=3.4e-11  Score=100.40  Aligned_cols=196  Identities=12%  Similarity=0.066  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      +..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+..  +.+...+..+...+.
T Consensus        34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Confidence            3333444444444444444444443332 2223334444444444444444444444443221  222233344444444


Q ss_pred             hcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 015765          194 ESGDSSSVYSILAEMRRKSI-RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK  272 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  272 (401)
                      ..|++++|.+.+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence            44444444444444433211 1122233334444455555555555555544432 122334444555555555555555


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765          273 ALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       273 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~  314 (401)
                      ..+++..+. ...+...+..+...+...|+.++|..+.+.+.
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            555555444 12233444444455555555555555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.49  E-value=1.6e-10  Score=108.38  Aligned_cols=250  Identities=12%  Similarity=0.024  Sum_probs=159.9

Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI---------LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      +.+++|.+.|++..+.. +.+...|..+..++.         ..+++++|...+++..+..  +-+..++..+...+...
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence            34678888888887764 334555655554443         2244778888888876542  34566677777778888


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL  275 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  275 (401)
                      |++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|...+
T Consensus       352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence            88888888888887763 335666777778888888888888888888776422 2223334444566678888888888


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-C
Q 015765          276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKG-W  353 (401)
Q Consensus       276 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~  353 (401)
                      ++..+....-+...+..+..++...|+.++|.+.+.++...  .|+ ....+.+...|...|  ++|...++++.+.. -
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~  505 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR  505 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence            88776532223455666777777888888888888876654  333 333444555566666  47777666665541 1


Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          354 VPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       354 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      .+....+  +...|.-.|+.+.+... +++.+.
T Consensus       506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             hhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence            2222222  33344445666666554 666554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.46  E-value=6.1e-10  Score=101.21  Aligned_cols=294  Identities=15%  Similarity=0.128  Sum_probs=204.9

Q ss_pred             HHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--
Q 015765           81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL--  158 (401)
Q Consensus        81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  158 (401)
                      ....+...|++++|++.++.-.  ..+.....+.......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-  
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence            4456688899999999987754  3445546778888888999999999999999999885 3344444444444422  


Q ss_pred             ---cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChH
Q 015765          159 ---SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS-SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE  234 (401)
Q Consensus       159 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  234 (401)
                         ..+.+...++|+++...   -|.......+.-.+.....+ ..+..++..+...|++   .+|..+-..|....+.+
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA  160 (517)
T ss_pred             ccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence               23577888888888654   34444333333222222233 3455666777777765   34555656666555555


Q ss_pred             HHHHHHHHHHHc----C----------CCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 015765          235 DVGKVLQMMEKC----G----------IASGV--NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGF  297 (401)
Q Consensus       235 ~a~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~  297 (401)
                      -..+++......    +          -+|+.  .++..+.+.|...|++++|..++++..+.  .|+ +..|..-.+.+
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil  238 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL  238 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence            555555554322    1          12333  24466678888999999999999999887  455 67788888999


Q ss_pred             hcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHc
Q 015765          298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM--------KSLVTGLAS  369 (401)
Q Consensus       298 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~  369 (401)
                      -+.|++.+|.+.++..++.+ .-|...-+..+..+.+.|++++|.+++......+..|.....        .....+|.+
T Consensus       239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r  317 (517)
T PF12569_consen  239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR  317 (517)
T ss_pred             HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999865 346666677788889999999999999988777654433222        445678899


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 015765          370 ISKVAEANELIGLMKKR  386 (401)
Q Consensus       370 ~g~~~~a~~~~~~~~~~  386 (401)
                      .|++..|++.|..+.+.
T Consensus       318 ~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  318 QGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HhhHHHHHHHHHHHHHH
Confidence            99999999988887766

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12370 invasion protein regulator; Provisional

Probab=99.45  E-value=9.7e-11  Score=109.77  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=131.2

Q ss_pred             CCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765          160 KNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFC---------ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK  229 (401)
Q Consensus       160 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (401)
                      ++.++|.+.|++..+.   .|+ ...|..+..++.         ..+++++|...+++..+.. +-+...+..+...+..
T Consensus       275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~  350 (553)
T PRK12370        275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI  350 (553)
T ss_pred             HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            3567777777777643   443 334444444333         1234677777777776653 3355666666667777


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHH
Q 015765          230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL  309 (401)
Q Consensus       230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  309 (401)
                      .|++++|...+++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|.+.
T Consensus       351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence            777777777777777764 334556666777777777777777777777776432 222233334345556777777777


Q ss_pred             HHHHHhCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          310 FASMTNGGCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       310 ~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      ++++.+.. .| +...+..+..++...|+.++|...+.++.... +.+....+.+...|...|  ++|...++.+.+.
T Consensus       429 ~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        429 GDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES  502 (553)
T ss_pred             HHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence            77766543 23 33345566666777777777777777665442 222333444555556666  3666666665543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.4e-10  Score=99.02  Aligned_cols=276  Identities=11%  Similarity=0.055  Sum_probs=206.8

Q ss_pred             HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHH-h-cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           84 KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG-Q-ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      .+.+.|+++.|+++++.+........ ...-+.+-..+. + ..++..|.++-+...... .-+......-.+.....|+
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~-saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd  505 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTA-SAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD  505 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhh-HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence            46789999999999988874443333 223333333332 2 346788888877776543 3344444333344456789


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYN---KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGK  238 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  238 (401)
                      +++|.+.|++...     .|...-.   .+.-.+-..|++++|++.|-++... +..+..+...+.+.|-...+...|++
T Consensus       506 ~dka~~~ykeal~-----ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  506 LDKAAEFYKEALN-----NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             HHHHHHHHHHHHc-----CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence            9999999998863     2333222   2333467789999999999888654 34467788888899999999999999


Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015765          239 VLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC  318 (401)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  318 (401)
                      ++.+.... ++.|..+.+-+...|-+.|+-..|.+..-+-.+- ++-+..+...|...|....-++++..+|++..-  +
T Consensus       580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i  655 (840)
T KOG2003|consen  580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I  655 (840)
T ss_pred             HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence            99887665 5678889999999999999999998877655443 455788888899999999999999999998765  5


Q ss_pred             CCCHhhHHHHHHHH-HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015765          319 EPDSYCFFMFTYFL-CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK  372 (401)
Q Consensus       319 ~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  372 (401)
                      .|+..-|..++..| .+.|++++|..+++....+ ++.|...+..|++.+...|-
T Consensus       656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            89999999888665 5789999999999987764 67899999999999887764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.45  E-value=8.9e-10  Score=102.48  Aligned_cols=334  Identities=13%  Similarity=0.050  Sum_probs=221.0

Q ss_pred             ChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCC-CCchhHHHHHHHHHHhcCChHHHHH
Q 015765           54 NPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDL-RQNERFHVHSIVLYGQANMIDHAMQ  132 (401)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~  132 (401)
                      ....++.++..+....  +.++.+.+.+...+.-.|+++.++.+...+...... +.-...|-.+.++|-..|++++|..
T Consensus       251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~  328 (1018)
T KOG2002|consen  251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK  328 (1018)
T ss_pred             HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            4455666666554432  235567777888888888888888888887733211 1113346678888888888888888


Q ss_pred             HHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC----ChhHHHHHHH
Q 015765          133 TFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG----DSSSVYSILA  206 (401)
Q Consensus       133 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~  206 (401)
                      .|.+..+..  ++  ...+.-+...+++.|+.+.+...|+.+.+..  +-+..+..++...|...+    ..+.|..++.
T Consensus       329 yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~  404 (1018)
T KOG2002|consen  329 YYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLG  404 (1018)
T ss_pred             HHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence            888877653  33  3334456778888888888888888887653  444556666666666654    4566777777


Q ss_pred             HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH----HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 015765          207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM----EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR-  281 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-  281 (401)
                      +.... .+.|...|-.+...+-...-+.. +..+..+    ...+..+.....|.+.......|+++.|...|+..... 
T Consensus       405 K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~  482 (1018)
T KOG2002|consen  405 KVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL  482 (1018)
T ss_pred             HHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence            76655 35567777777776665544333 5555443    34444566778888888888889999998888877654 


Q ss_pred             --CCCcCH------HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          282 --GIKPNL------DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS-YCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       282 --~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                        ...+|.      .+-..+...+-..++.+.|.+.|..+.+.  .|+. ..|..+.......+...+|...+......+
T Consensus       483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d  560 (1018)
T KOG2002|consen  483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID  560 (1018)
T ss_pred             hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence              112222      23334556666778888899999888875  3543 334445434445577888888888877654


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015765          353 WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAAL  398 (401)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll  398 (401)
                       ..++..+..+...+.+...+..|.+-|+.+.+.-.....+|..+=
T Consensus       561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia  605 (1018)
T KOG2002|consen  561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA  605 (1018)
T ss_pred             -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence             456666766777888888888888877777666333345555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.42  E-value=5.7e-11  Score=97.13  Aligned_cols=233  Identities=11%  Similarity=0.031  Sum_probs=197.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH-HHHH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY-NKVI  189 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~  189 (401)
                      ...-+.+..+|.+.|.+.+|.+-|+.-++.  .|-+.||..|-..|.+..+++.|+.++.+-.+.   .|-.+|+ .-+.
T Consensus       223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~A  297 (478)
T KOG1129|consen  223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQA  297 (478)
T ss_pred             HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhH
Confidence            445577889999999999999999998876  678888999999999999999999999998865   4555554 5577


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 015765          190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE  269 (401)
Q Consensus       190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  269 (401)
                      ..+-..++.++|.++|+...+.. +.+......+...|.-.++++.|+..++.+.+.|+. +...|+.+.-+|...++++
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence            78888899999999999998763 557777888888899999999999999999999965 6788888988999999999


Q ss_pred             HHHHHHHHHHHCCCCcC--HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          270 EAKALLDGMLSRGIKPN--LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       270 ~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      -++.-|.+....--.|+  ...|..+.......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|..++..
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~  454 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA  454 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence            99999999887644444  3567778888889999999999999988764 44567899998888999999999999998


Q ss_pred             HHHC
Q 015765          348 SMAK  351 (401)
Q Consensus       348 ~~~~  351 (401)
                      ....
T Consensus       455 A~s~  458 (478)
T KOG1129|consen  455 AKSV  458 (478)
T ss_pred             hhhh
Confidence            7755

>PF13041 PPR_2: PPR repeat family

Probab=99.40  E-value=1.2e-12  Score=79.35  Aligned_cols=49  Identities=43%  Similarity=0.617  Sum_probs=22.9

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015765          250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG  298 (401)
Q Consensus       250 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  298 (401)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            3444444444444444444444444444444444444444444444443

>PF13041 PPR_2: PPR repeat family

Probab=99.39  E-value=1.2e-12  Score=79.39  Aligned_cols=50  Identities=42%  Similarity=0.771  Sum_probs=35.8

Q ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 015765          285 PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ  334 (401)
Q Consensus       285 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  334 (401)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56677777777777777777777777777777777777777777776653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=5.1e-08  Score=84.17  Aligned_cols=200  Identities=11%  Similarity=0.096  Sum_probs=122.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-------hHHHHHHHH---HccCChHHHHHHHHHHHHcCCCCCc
Q 015765          183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT-------DFGLLLAGF---YKEHKYEDVGKVLQMMEKCGIASGV  252 (401)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~  252 (401)
                      .+|-..+..-...|+.+...++|++.... ++|-..       .|..+=-++   ....+.+.+.++++...+. ++...
T Consensus       323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk  400 (677)
T KOG1915|consen  323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK  400 (677)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence            34444444444455555566666555543 333111       111110111   1334555556666655553 33344


Q ss_pred             hhHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 015765          253 NVYNIRIQSL----CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMF  328 (401)
Q Consensus       253 ~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  328 (401)
                      .||.-+=-.|    .++.++..|.+++....  |.-|-..+|...|..=.+.++++.+..+|++.++.+ +-|..+|...
T Consensus       401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky  477 (677)
T KOG1915|consen  401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY  477 (677)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence            4444332222    34566777777776554  346677777777777778888888888888888764 3456677777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          329 TYFLCQGGEYETALKVCRASMAKG-WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       329 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      ...=...|+.+.|..+|.-+++.. +......|.+.|+--...|.++.|..+++.+++..
T Consensus       478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            777778888888888888777653 22334556666666677888999999988888763

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.36  E-value=5e-09  Score=95.35  Aligned_cols=297  Identities=13%  Similarity=0.106  Sum_probs=207.5

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY  121 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  121 (401)
                      +.--.+++...|++++|++.+......  +......+......+.+.|+.++|..+|..+...+  |.|...|..+..+.
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence            334457889999999999999876443  55566778888999999999999999999999543  55567777777776


Q ss_pred             Hhc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          122 GQA-----NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYE-EVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       122 ~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      .-.     ...+...++|+++.+.-  |.......+.-.+..-..+. .+...+..+.+. |+|   .+|+.+-..|...
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvP---slF~~lk~Ly~d~  156 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVP---SLFSNLKPLYKDP  156 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCc---hHHHHHHHHHcCh
Confidence            332     35778888999887653  43333332322222212232 344444444433 443   2466666666655


Q ss_pred             CChhHHHHHHHHHHhC----C----------CCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHH
Q 015765          196 GDSSSVYSILAEMRRK----S----------IRPNA--TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI  259 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  259 (401)
                      ...+-..+++......    +          -+|+.  .++..+...|-..|++++|++.+++.++.. +..+..|..-.
T Consensus       157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka  235 (517)
T PF12569_consen  157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA  235 (517)
T ss_pred             hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            5555555555554332    1          12333  244566778889999999999999999974 33467888889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH--------HHHHHH
Q 015765          260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF--------FMFTYF  331 (401)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------~~li~~  331 (401)
                      ..+-+.|++.+|.+.++........ |...-+..+..+.++|++++|.+++....+.+..|-...+        .....+
T Consensus       236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a  314 (517)
T PF12569_consen  236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA  314 (517)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888543 7777788888999999999999999999877654432222        334577


Q ss_pred             HHccCCHHHHHHHHHHHHH
Q 015765          332 LCQGGEYETALKVCRASMA  350 (401)
Q Consensus       332 ~~~~g~~~~a~~~~~~~~~  350 (401)
                      |.+.|++..|++.|....+
T Consensus       315 ~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  315 YLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            8899999888887765544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=6.2e-09  Score=88.12  Aligned_cols=301  Identities=12%  Similarity=0.006  Sum_probs=219.4

Q ss_pred             HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015765           84 KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYE  163 (401)
Q Consensus        84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  163 (401)
                      +.+..++-..|.+++--+.....++.|......+...+...|+.++|...|++....+ +-+........-.+.+.|+.+
T Consensus       205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e  283 (564)
T KOG1174|consen  205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCE  283 (564)
T ss_pred             HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHh
Confidence            3344566666666665555566778888889999999999999999999999887543 222222233334456778888


Q ss_pred             HHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          164 EVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       164 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      ....+...+....  ......|..-.......+++..|+.+-++.++.. +.+...+-.-...+...|+.++|.-.|+..
T Consensus       284 ~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A  360 (564)
T KOG1174|consen  284 QDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA  360 (564)
T ss_pred             hHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence            8777776664321  2333445555555667788999999988877653 335556666667888999999999999988


Q ss_pred             HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHh-cCCChHHHHHHHHHHHhCCCCCC
Q 015765          244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI-HGFG-KEGNLEGAKKLFASMTNGGCEPD  321 (401)
Q Consensus       244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~m~~~~~~~~  321 (401)
                      +... +-+...|.-++.+|...|++.+|.-.-+...+. +..+..+.+.+. ..|. ...--++|.++++...+.  .|+
T Consensus       361 q~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~  436 (564)
T KOG1174|consen  361 QMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPI  436 (564)
T ss_pred             Hhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCc
Confidence            8763 457789999999999999999988777666554 233455555442 2222 233457888888887764  465


Q ss_pred             -HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccc
Q 015765          322 -SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMW  394 (401)
Q Consensus       322 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  394 (401)
                       ....+.+...|...|..+.++.++++....  .||....+.|.+.+...+.+.+|.+.|.......|.|..+.
T Consensus       437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence             345677788899999999999999988865  68999999999999999999999999999998888876543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=1.2e-08  Score=87.99  Aligned_cols=330  Identities=11%  Similarity=0.100  Sum_probs=222.0

Q ss_pred             hcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHH
Q 015765           50 KSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDH  129 (401)
Q Consensus        50 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  129 (401)
                      .++++..+|..+|+.+...  ...+...|-..+.+=.+...++.|.-+|+.....  .|.-..++..-+..=-..|++..
T Consensus        84 esq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~g  159 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAG  159 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHH
Confidence            4556778899999888755  2335668888899999999999999999998732  33435566666666667899999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015765          130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMR  209 (401)
Q Consensus       130 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  209 (401)
                      |.++|+.-.+.  .|+...|++.|+.=.+.+.++.|..+|+..+   -+.|++.+|--....=-+.|....+..+|+...
T Consensus       160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi  234 (677)
T KOG1915|consen  160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYERAI  234 (677)
T ss_pred             HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            99999998875  8999999999999999999999999999997   447999998888887788888888888888765


Q ss_pred             hCCCCCCHH----hHHHHHHHHHccCChHHHHHHHHHHHH----------------------------------------
Q 015765          210 RKSIRPNAT----DFGLLLAGFYKEHKYEDVGKVLQMMEK----------------------------------------  245 (401)
Q Consensus       210 ~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------------------------------  245 (401)
                      +. +. |..    .|.+....=.+...++.|.-+|+...+                                        
T Consensus       235 e~-~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE  312 (677)
T KOG1915|consen  235 EF-LG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE  312 (677)
T ss_pred             HH-hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence            53 11 221    222222211222233333333332222                                        


Q ss_pred             ----cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHH-----HHH---hcCCChHHHHHHHH
Q 015765          246 ----CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL--DTYKHLI-----HGF---GKEGNLEGAKKLFA  311 (401)
Q Consensus       246 ----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~li-----~~~---~~~~~~~~a~~~~~  311 (401)
                          .+ +-|-.+|--.+..-...|+.+...++|++.... ++|-.  ..|...|     -++   ....+.+.+.++|+
T Consensus       313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                11 334455666666666778888888888887765 33321  1121111     111   23567777777777


Q ss_pred             HHHhCCCCCCHhhHHHHHHH----HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          312 SMTNGGCEPDSYCFFMFTYF----LCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       312 ~m~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      ..++. ++...+||..+--.    -.+..++..|.+++..++  |.-|...+|...|..-.+.+.++....++++.++-.
T Consensus       391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~  467 (677)
T KOG1915|consen  391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS  467 (677)
T ss_pred             HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            77662 33334454443322    345667777777777666  556777777777777777777777777777777777


Q ss_pred             CCCcccch
Q 015765          388 PKSGDMWN  395 (401)
Q Consensus       388 ~~~~~~~~  395 (401)
                      |.|..+|.
T Consensus       468 Pe~c~~W~  475 (677)
T KOG1915|consen  468 PENCYAWS  475 (677)
T ss_pred             hHhhHHHH
Confidence            77776664

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=5.8e-09  Score=90.12  Aligned_cols=326  Identities=10%  Similarity=0.017  Sum_probs=172.4

Q ss_pred             HHhcCCChhHHHHHhhhccCCCCCCcc-HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015765           48 RLKSESNPFRILDICCGASLAPESPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM  126 (401)
Q Consensus        48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  126 (401)
                      -+-+++.++.|++.+.++..-   .|| +.-|.....+|...|+|++.++.-.+..+..  |.....+..-..++-..|+
T Consensus       124 ~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~  198 (606)
T KOG0547|consen  124 KFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGK  198 (606)
T ss_pred             hhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhcc
Confidence            345667899999999998753   234 6788899999999999999888877766332  3334555555666777777


Q ss_pred             hHHHHH----------------------HHHHH---------hhCC--CCCCHHHHHHHHHHHHh---------------
Q 015765          127 IDHAMQ----------------------TFEEM---------DKYG--LRQSVDALNALLLGCIL---------------  158 (401)
Q Consensus       127 ~~~a~~----------------------~~~~~---------~~~~--~~~~~~~~~~l~~~~~~---------------  158 (401)
                      +++|+.                      +++..         .+.+  +-|+.....+....+..               
T Consensus       199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa  278 (606)
T KOG0547|consen  199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA  278 (606)
T ss_pred             HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence            766654                      11110         0011  11333322222222210               


Q ss_pred             ----------cC---CHHHHHHHH-----------------------------------------------HhchhhcCC
Q 015765          159 ----------SK---NYEEVKRIF-----------------------------------------------TEFPKVYGI  178 (401)
Q Consensus       159 ----------~~---~~~~a~~~~-----------------------------------------------~~~~~~~~~  178 (401)
                                .+   .+..|.+.+                                               +..++..  
T Consensus       279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--  356 (606)
T KOG0547|consen  279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--  356 (606)
T ss_pred             hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence                      00   111111111                                               1111100  


Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 015765          179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR  258 (401)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  258 (401)
                      +.+...|--+...|....+.++..+.|++..+.. +-+..+|..-.+...-.+++++|..-|++.+... +.+...|-.+
T Consensus       357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl  434 (606)
T KOG0547|consen  357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL  434 (606)
T ss_pred             cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence            0011113333334444444444444444444432 2233344444444444455555555555555543 2244455555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC-----CCCCHhhHHH-HHHHH
Q 015765          259 IQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG-----CEPDSYCFFM-FTYFL  332 (401)
Q Consensus       259 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~-li~~~  332 (401)
                      ..+..+.++++++...|++..++ ++-.+..|+-....+...++++.|.+.|+..++..     +..+...+.. .+-.+
T Consensus       435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~  513 (606)
T KOG0547|consen  435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL  513 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence            55556666777777777776665 23345666667777777777777777777666431     1112211111 11111


Q ss_pred             HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          333 CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      .=.+++..|..+++++++.+ +-....|..|...-...|++++|+++|++..
T Consensus       514 qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  514 QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            12366777777777776654 2234557777777777777777777777654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.6e-09  Score=93.78  Aligned_cols=274  Identities=8%  Similarity=-0.077  Sum_probs=209.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                      ......-..-|...+++.++.++++...+.. ++....+..-|.++...|+..+-..+=.++++.+  |-...+|-++.-
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~  320 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGC  320 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHH
Confidence            3444555666778899999999999988876 6777777777888888998887777777777654  566778999998


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765          191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE  270 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  270 (401)
                      -|.-.|+..+|.+.|.+..... +.-...|-.....|.-.|..|+|...+...-+.= +-..--+--+.--|.+.++.+.
T Consensus       321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence            8888899999999999876542 1134578888889999999999998887765531 1111112334445677899999


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC------CCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 015765          271 AKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG------GCEPDSYCFFMFTYFLCQGGEYETALKV  344 (401)
Q Consensus       271 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~  344 (401)
                      |.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..+..      ...-...+++.|..+|.+.+.+++|+..
T Consensus       399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            999999887763 336777777777777788999999999887622      1112456788888899999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          345 CRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      +++.+... +.+..++.++.-.|...|+++.|.+.|.+.+-..|.|.
T Consensus       478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            99988775 66888999999999999999999999999888777663

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.34  E-value=1.1e-10  Score=107.14  Aligned_cols=247  Identities=14%  Similarity=0.142  Sum_probs=172.1

Q ss_pred             CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 015765           70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDAL  149 (401)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  149 (401)
                      |+.|+..+|..+|.-|+..|+++.|- +|.-|. ....+.+...++.++.+....++.+.+.           .|...+|
T Consensus        20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty   86 (1088)
T KOG4318|consen   20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY   86 (1088)
T ss_pred             cCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence            68889999999999999999999999 998888 4456667889999999999988877665           6788999


Q ss_pred             HHHHHHHHhcCCHHH---HHHHHHhchhh---cCCCCCH--------------HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015765          150 NALLLGCILSKNYEE---VKRIFTEFPKV---YGIEPNS--------------ETYNKVIKSFCESGDSSSVYSILAEMR  209 (401)
Q Consensus       150 ~~l~~~~~~~~~~~~---a~~~~~~~~~~---~~~~~~~--------------~~~~~l~~~~~~~~~~~~a~~~~~~~~  209 (401)
                      ..|..+|...||...   ..+.+..+...   .|+-...              ..-...+....-.|-++.+++++..+.
T Consensus        87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P  166 (1088)
T KOG4318|consen   87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP  166 (1088)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999998654   33322222111   1110000              011122333334455555555555442


Q ss_pred             hCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 015765          210 RKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT  289 (401)
Q Consensus       210 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  289 (401)
                      ..... .  .+..+++-+...  ....+++........-.++..+|.+++.+-...|+.+.|..++.+|.+.|+..+..-
T Consensus       167 vsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy  241 (1088)
T KOG4318|consen  167 VSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY  241 (1088)
T ss_pred             ccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence            21100 0  111124433332  233344444333322258889999999999999999999999999999999888887


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 015765          290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE  337 (401)
Q Consensus       290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  337 (401)
                      |..|+-+   .++...+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus       242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            7777765   78888899999999999999999999988888888665

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.32  E-value=5.6e-08  Score=86.73  Aligned_cols=308  Identities=10%  Similarity=-0.014  Sum_probs=193.2

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNA-  151 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  151 (401)
                      ....|..+...+...|+.+.+.+.+..... .+...............+...|++++|.+.+++..+.. +.+...+.. 
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~   83 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH   83 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence            345666777777777888887777766552 22222212333333445678899999999999988764 445545442 


Q ss_pred             --HHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 015765          152 --LLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFY  228 (401)
Q Consensus       152 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (401)
                        ........+..+.+.+.+....   ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~  159 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE  159 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence              1222223455566666665432   12333 3344566678889999999999999998864 445677888889999


Q ss_pred             ccCChHHHHHHHHHHHHcCCC-CCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH-H--HHHHHHhcCC
Q 015765          229 KEHKYEDVGKVLQMMEKCGIA-SGV--NVYNIRIQSLCKLKRSEEAKALLDGMLSRGI-KPNLDTY-K--HLIHGFGKEG  301 (401)
Q Consensus       229 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~~  301 (401)
                      ..|++++|...+++..+.... ++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|
T Consensus       160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  239 (355)
T cd05804         160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG  239 (355)
T ss_pred             HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence            999999999999988775321 222  2355678889999999999999999864432 1222211 1  2333344445


Q ss_pred             ChHHHHHH--HHHHHhCCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHc
Q 015765          302 NLEGAKKL--FASMTNGGC--EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV--------PHFSTMKSLVTGLAS  369 (401)
Q Consensus       302 ~~~~a~~~--~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~  369 (401)
                      ....+.++  +........  ............++...|+.++|..+++.+......        ...........++..
T Consensus       240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~  319 (355)
T cd05804         240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA  319 (355)
T ss_pred             CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence            43333333  211111110  111222235667788899999999999987764221        112233334445668


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 015765          370 ISKVAEANELIGLMKKR  386 (401)
Q Consensus       370 ~g~~~~a~~~~~~~~~~  386 (401)
                      .|+.++|.+.+......
T Consensus       320 ~g~~~~A~~~L~~al~~  336 (355)
T cd05804         320 EGNYATALELLGPVRDD  336 (355)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            99999999999988765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.29  E-value=3e-09  Score=95.75  Aligned_cols=243  Identities=15%  Similarity=0.109  Sum_probs=178.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh----cCC-CCCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 015765          143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKV----YGI-EPNSET-YNKVIKSFCESGDSSSVYSILAEMRRK-----  211 (401)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----  211 (401)
                      +.-..+...+...|...|+++.|+.+++...+.    .|. .|...+ .+.+...|...+++++|..+|+++...     
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            334556667889999999999999999887654    221 233333 445778889999999999999998653     


Q ss_pred             C-CCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 015765          212 S-IRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-----GI-ASG-VNVYNIRIQSLCKLKRSEEAKALLDGMLSR-  281 (401)
Q Consensus       212 ~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-  281 (401)
                      | ..| -..+++.|..+|++.|++++|...++...+.     +. .+. ...++.+...++..+++++|..++.+..+. 
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            2 111 2346777778899999999999888776432     11 111 234566777888999999999999876542 


Q ss_pred             --CCCcC----HHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          282 --GIKPN----LDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCE--P-DSYCFFMFTYFLCQGGEYETALKVCRAS  348 (401)
Q Consensus       282 --~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~  348 (401)
                        -+.++    ..+++.|...|...|++++|.++++..+..    +.+  + ....++.+...|.+.+++.+|.++|.+.
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence              12222    367899999999999999999999987743    111  2 2456788889999999999999998875


Q ss_pred             HHC----CC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          349 MAK----GW--VPHFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       349 ~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      ..-    |.  +-...+|..|...|...|+++.|.++.+.+..
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            432    32  22346789999999999999999999988763

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.27  E-value=2.5e-08  Score=86.31  Aligned_cols=83  Identities=8%  Similarity=0.045  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 015765           78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS-VDALNALLLGC  156 (401)
Q Consensus        78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~  156 (401)
                      +-....-|-+.|.+++|++.|.+.......  .+.+|.....+|...|+++++.+.-.+.++.+  |+ ...+..-..++
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH  193 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence            334456678899999999999999843221  15689999999999999999999888887753  33 23333333444


Q ss_pred             HhcCCHHH
Q 015765          157 ILSKNYEE  164 (401)
Q Consensus       157 ~~~~~~~~  164 (401)
                      -..|++++
T Consensus       194 E~lg~~~e  201 (606)
T KOG0547|consen  194 EQLGKFDE  201 (606)
T ss_pred             HhhccHHH
Confidence            44455444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.27  E-value=4.8e-09  Score=90.25  Aligned_cols=220  Identities=9%  Similarity=0.053  Sum_probs=151.2

Q ss_pred             hcCChHHHHHHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          123 QANMIDHAMQTFEEMDKYG-LRQ--SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      ..+..+.++.-+.+++... ..|  ....|..+...|...|+.++|...|++..+..  +.+...|+.+...+...|+++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~  115 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFD  115 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHH
Confidence            4466788888888887543 122  24557777788889999999999999887642  445678899999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      +|.+.|++..+.. +-+..++..+..++...|++++|.+.++...+..  |+..........+...++.++|...|++..
T Consensus       116 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        116 AAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            9999999988753 3356777888888889999999999999988764  433322222333445678999999997655


Q ss_pred             HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---CC--CC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---GC--EP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      ... .|+...+ .+..  ...|+...+ +.+..+.+.   ..  .| ....|..+...+.+.|++++|...|++..+.+
T Consensus       193 ~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        193 EKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             hhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            432 2232222 2222  234555444 344444422   11  11 23578888888999999999999999988776

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.26  E-value=5e-10  Score=94.97  Aligned_cols=153  Identities=18%  Similarity=0.233  Sum_probs=72.1

Q ss_pred             HHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH----HhcCC
Q 015765          226 GFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG----FGKEG  301 (401)
Q Consensus       226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~----~~~~~  301 (401)
                      .+...|++++|++++...      .+.......+..|.+.++++.|.+.++.|.+.+  .| .+...+..+    +...+
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence            344455555555554321      233444455555555666666666665555432  12 222222222    22223


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHH
Q 015765          302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV-AEANELI  380 (401)
Q Consensus       302 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~  380 (401)
                      .+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-++.++..++-+....|+. +.+.+++
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            455566666665433 33455555555555556666666666655555443 33444555555555555554 4455555


Q ss_pred             HHHHhcCCC
Q 015765          381 GLMKKRFPK  389 (401)
Q Consensus       381 ~~~~~~~~~  389 (401)
                      +++.+..|.
T Consensus       260 ~qL~~~~p~  268 (290)
T PF04733_consen  260 SQLKQSNPN  268 (290)
T ss_dssp             HHCHHHTTT
T ss_pred             HHHHHhCCC
Confidence            555554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=4.8e-08  Score=82.87  Aligned_cols=308  Identities=9%  Similarity=-0.001  Sum_probs=225.2

Q ss_pred             cchhhchhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCc
Q 015765           32 EAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQN  110 (401)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~  110 (401)
                      .++..+..+.|..+.......... .|...+-........+.+......+.+.+...|+.++|+..|++... .|.... 
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs-~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~-  267 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHS-DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE-  267 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccc-hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh-
Confidence            345567777887777666555533 33333333333444777999999999999999999999999999872 222222 


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                        ....-...+.+.|+++....+...+.... ..+...|..-.......++++.|+.+-++.++..  +.+...+-.-..
T Consensus       268 --~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~  342 (564)
T KOG1174|consen  268 --AMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGR  342 (564)
T ss_pred             --hHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccH
Confidence              22222334567899999988888877643 3455566666666677889999999988887542  334455555566


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHH-HHHH-hcCCH
Q 015765          191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI-QSLC-KLKRS  268 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~  268 (401)
                      .+...++.++|.-.|+...... +-+...|.-++.+|...|++.+|.-+-++..+. ++.+..+.+.+. ..+. ...--
T Consensus       343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r  420 (564)
T KOG1174|consen  343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR  420 (564)
T ss_pred             HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence            7788999999999999987652 457889999999999999999998877766554 344555555442 2222 22345


Q ss_pred             HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          269 EEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       269 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      ++|.++++.-...  .|+ ....+.+...|...|..+.+..+++.....  .||....+.+...+...+.+++|+..|..
T Consensus       421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~  496 (564)
T KOG1174|consen  421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK  496 (564)
T ss_pred             HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            7888888877765  455 456777888899999999999999998874  78999999999999999999999999998


Q ss_pred             HHHCC
Q 015765          348 SMAKG  352 (401)
Q Consensus       348 ~~~~~  352 (401)
                      +...+
T Consensus       497 ALr~d  501 (564)
T KOG1174|consen  497 ALRQD  501 (564)
T ss_pred             HHhcC
Confidence            88664

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.26  E-value=1.1e-08  Score=92.23  Aligned_cols=243  Identities=19%  Similarity=0.245  Sum_probs=177.6

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhchhhc----
Q 015765          108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY-----GL-RQSV-DALNALLLGCILSKNYEEVKRIFTEFPKVY----  176 (401)
Q Consensus       108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----  176 (401)
                      |.-..+...+...|...|+++.|..+++...+.     |. .|.. ...+.+...|...+++++|..+|+++....    
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            333566777889999999999999999987764     21 2222 234457778899999999999999885421    


Q ss_pred             CC-CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCH-HhHHHHHHHHHccCChHHHHHHHHHHHHc-
Q 015765          177 GI-EPN-SETYNKVIKSFCESGDSSSVYSILAEMRRK-----SI-RPNA-TDFGLLLAGFYKEHKYEDVGKVLQMMEKC-  246 (401)
Q Consensus       177 ~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-  246 (401)
                      |- .|. ..+++.|...|++.|++++|...+++..+.     |. .|.. ..++.+...|+..+++++|..+++...+. 
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            21 122 346788888999999999998888776432     11 1222 23666778889999999999998876442 


Q ss_pred             --CCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCcC-HHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765          247 --GIASG----VNVYNIRIQSLCKLKRSEEAKALLDGMLSR-----G-IKPN-LDTYKHLIHGFGKEGNLEGAKKLFASM  313 (401)
Q Consensus       247 --~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m  313 (401)
                        -+.++    ..+++.+...|...|++++|.+++++....     | ..+. ...++.|...|.+.+++.+|.++|.+.
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence              12222    367899999999999999999999987653     1 1222 356788888999999999999888764


Q ss_pred             H----hCCC-CC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          314 T----NGGC-EP-DSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       314 ~----~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      .    ..|. .| ...+|..|...|.+.|+++.|.++.+....
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            3    3332 22 246789999999999999999999887663

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=1.9e-08  Score=86.63  Aligned_cols=218  Identities=17%  Similarity=0.114  Sum_probs=132.3

Q ss_pred             CCchHHHHHHHHhhhCCCCCC--chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015765           89 NHFNAISQLLEELKTRPDLRQ--NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVK  166 (401)
Q Consensus        89 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  166 (401)
                      +..+.++.-+.++.......+  ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            345556666666653222211  13456666667777788888888888777765 456777777878888888888888


Q ss_pred             HHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765          167 RIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK  245 (401)
Q Consensus       167 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  245 (401)
                      +.|++..+.   .| +..+|..+...+...|++++|.+.|++..+..  |+..........+...++.++|...+++...
T Consensus       119 ~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        119 EAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            888877643   34 35566777777777888888888888777652  3322222222233456677888888766543


Q ss_pred             cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--Cc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015765          246 CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR---GI--KP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG  317 (401)
Q Consensus       246 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  317 (401)
                      .. .++... ..+.  ....|+...+ ..++.+.+.   .+  .| ....|..+...+.+.|++++|...|++..+.+
T Consensus       194 ~~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        194 KL-DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             hC-CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            32 222221 1222  2234554443 244444322   11  11 23567778888888888888888888888754

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2e-08  Score=88.47  Aligned_cols=285  Identities=13%  Similarity=0.066  Sum_probs=220.0

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +......-.+-+-..+++.+..++.+.+.....+.  ...+..-|..+...|+..+-..+=.++.+.- +..+.+|-++.
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh--~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg  319 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFH--LPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG  319 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCC--cchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence            45556666777888999999999999988544333  3456666668888899888888888887764 66788899998


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK  232 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  232 (401)
                      --|.-.|...+|.+.|.+..   .+.|. ...|-.+.+.|.-.|..++|+..|...-+. ++-...-+--+.--|.+.+.
T Consensus       320 ~YYl~i~k~seARry~SKat---~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n  395 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKAT---TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN  395 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHh---hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence            88888899999999998875   22333 457888999999999999999999887553 11122223334455778899


Q ss_pred             hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CC-cCHHHHHHHHHHHhcCCChHHH
Q 015765          233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----G-IK-PNLDTYKHLIHGFGKEGNLEGA  306 (401)
Q Consensus       233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~-p~~~~~~~li~~~~~~~~~~~a  306 (401)
                      .+.|.+.|.+..... +.|....+-+.-.....+.+.+|..+|+.....    + -+ .-..+++.|..+|.+.+.+++|
T Consensus       396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            999999999988863 557777887777777889999999999887632    1 11 1345688899999999999999


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015765          307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS  369 (401)
Q Consensus       307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (401)
                      +..++..+... +.+..++.++.-.|...|+++.|.+.|.+...  +.|+..+...++..+..
T Consensus       475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence            99999988763 56788999999999999999999999998874  57888777777765543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.25  E-value=1.9e-08  Score=78.72  Aligned_cols=203  Identities=14%  Similarity=0.084  Sum_probs=148.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh
Q 015765          185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK  264 (401)
Q Consensus       185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  264 (401)
                      ..-+.-.|.+.|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..... +.+..+.|..-..+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            3445667778888888888888887763 3356677777788888888888888888877764 3456677778888888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 015765          265 LKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALK  343 (401)
Q Consensus       265 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  343 (401)
                      .|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            888888888888777652111 24567777777778888888888888887753 2234566777777788888888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          344 VCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      +++.....+. ++..+....|+.-...|+-+.+.++=.++...+|...
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~  241 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE  241 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence            8887776653 7777777777777788888888777777777676554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.23  E-value=2.7e-08  Score=77.94  Aligned_cols=197  Identities=11%  Similarity=0.008  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      ...+...|...|++..|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+..  +-+-.+.|.....+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC  114 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHH
Confidence            3344455566666666666666666554 3445556666666666666666666666655331  223344555555566


Q ss_pred             hcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 015765          194 ESGDSSSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK  272 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  272 (401)
                      ..|++++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++..+.. +....+.-.+.....+.|++..|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence            6666666666666654432 11223455555555556666666666666655543 223334445555555566666666


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765          273 ALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       273 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                      ..++.....+. ++..+.-..|+.-...|+.+.+-++=..+.+
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            66666555543 4555555555555555665555555444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=5e-08  Score=79.31  Aligned_cols=329  Identities=13%  Similarity=0.096  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHH
Q 015765           40 EKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV  119 (401)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  119 (401)
                      +.+..++..+-+..++..|++++......  .+.+......+..+|-+..++..|...++++...  .|.-...--.-..
T Consensus        11 Geftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ   86 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ   86 (459)
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence            34556666666666777777777665443  2335666777777777777777777777776522  1221222222344


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG--CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      ...+.+.+.+|+++...|.+.   ++...-..-+.+  ....+++..+..++++.+.    +-+..+.+.......+.|+
T Consensus        87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----en~Ad~~in~gCllykegq  159 (459)
T KOG4340|consen   87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----ENEADGQINLGCLLYKEGQ  159 (459)
T ss_pred             HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC----CCccchhccchheeecccc
Confidence            455667777777777777542   222222222222  2345667777777777642    2233344444444566777


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc-------------------------
Q 015765          198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV-------------------------  252 (401)
Q Consensus       198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------------  252 (401)
                      ++.|.+-|+...+-|.--....|+..+.. .+.|+++.|++...++.++|+....                         
T Consensus       160 yEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S  238 (459)
T KOG4340|consen  160 YEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS  238 (459)
T ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence            77777777777664433345556655543 4556777777777777777664211                         


Q ss_pred             ---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 015765          253 ---NVYNIRIQSLCKLKRSEEAKALLDGMLSRG-IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMF  328 (401)
Q Consensus       253 ---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  328 (401)
                         ..+|.-...+.+.|+++.|.+.+-.|--+. ...|++|...+.-.- ..+++....+-+.-+.+.+ +-...||..+
T Consensus       239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl  316 (459)
T KOG4340|consen  239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL  316 (459)
T ss_pred             HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence               112222333455667777766666664321 233555554443221 2344555555555455443 2345577777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 015765          329 TYFLCQGGEYETALKVCRASMAKGWV-PHFSTMKSLVTGLA-SISKVAEANELIGLM  383 (401)
Q Consensus       329 i~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~  383 (401)
                      +-.||+..-++.|..++.+-...-.. .+...|+ |++++. -.-..++|.+-++.+
T Consensus       317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence            77777777777777766542222111 1222232 333333 234566666655554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.11  E-value=1.2e-08  Score=86.60  Aligned_cols=252  Identities=12%  Similarity=0.047  Sum_probs=144.9

Q ss_pred             HHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 015765           83 SKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY  162 (401)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  162 (401)
                      +-.-..|.+..++.-.+ .. .............+.+++...|+++.++   .++.... .|.......+...+...++-
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LK-SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CH-TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHhhhHHHHHHHhh-cc-CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence            44456677777775555 22 1111222344455667777777766544   3333322 55555555554444443455


Q ss_pred             HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 015765          163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM  242 (401)
Q Consensus       163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  242 (401)
                      +.+..-+++.........+..........+...|++++|++++..-      .+.......+..+.+.++++.|.+.++.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555544332111122222222334455667888888777542      3556666777888888888888888888


Q ss_pred             HHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015765          243 MEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC  318 (401)
Q Consensus       243 ~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  318 (401)
                      |.+.+  .| .+...+..++..    .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ 
T Consensus       157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-  231 (290)
T PF04733_consen  157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-  231 (290)
T ss_dssp             HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred             HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence            87653  23 334444444332    34688888888887665 45677778888888888888888888888877653 


Q ss_pred             CCCHhhHHHHHHHHHccCCH-HHHHHHHHHHHHC
Q 015765          319 EPDSYCFFMFTYFLCQGGEY-ETALKVCRASMAK  351 (401)
Q Consensus       319 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~  351 (401)
                      +-+..+...++.+....|+. +.+.+++.++...
T Consensus       232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            33455666667766677766 6677777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.11  E-value=4.2e-07  Score=81.10  Aligned_cols=267  Identities=13%  Similarity=0.042  Sum_probs=150.9

Q ss_pred             HHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHH---HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015765           80 IAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH---SIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGC  156 (401)
Q Consensus        80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  156 (401)
                      .....+...|++++|.+++++....  .|.+...+..   ........+..+.+.+.+..... ..+........+...+
T Consensus        48 ~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~  124 (355)
T cd05804          48 VEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHH
Confidence            3344566778888888888887633  2333333332   11112234555555555554211 1122334444556677


Q ss_pred             HhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HhHHHHHHHHHccCCh
Q 015765          157 ILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSI-RPNA--TDFGLLLAGFYKEHKY  233 (401)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~~~~  233 (401)
                      ...|++++|...+++..+..  +.+...+..+...+...|++++|...+++...... .++.  ..|..+...+...|++
T Consensus       125 ~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~  202 (355)
T cd05804         125 EEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY  202 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence            78888888888888887542  44456677778888888888888888888766421 1222  2345677778888888


Q ss_pred             HHHHHHHHHHHHcCC-CCCchhH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CcCHHHHHHHHHHHhcCCChHH
Q 015765          234 EDVGKVLQMMEKCGI-ASGVNVY-N--IRIQSLCKLKRSEEAKAL--L-DGMLSRGI-KPNLDTYKHLIHGFGKEGNLEG  305 (401)
Q Consensus       234 ~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~~~~~~~~~a~~~--~-~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~  305 (401)
                      ++|..++++...... .+..... +  .++.-+...|....+.+.  + ........ ............++...|+.+.
T Consensus       203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  282 (355)
T cd05804         203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA  282 (355)
T ss_pred             HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence            888888888754322 1111111 1  223333334433333322  1 11111100 1111222355667778888888


Q ss_pred             HHHHHHHHHhCCCC------C--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          306 AKKLFASMTNGGCE------P--DSYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       306 a~~~~~~m~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      |..+++.+......      .  .........-++...|+.++|.+.+......
T Consensus       283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888887653211      1  1122223334456788999998888877665

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.10  E-value=2.1e-08  Score=92.69  Aligned_cols=317  Identities=13%  Similarity=0.116  Sum_probs=202.1

Q ss_pred             hchhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHH
Q 015765           36 LTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHV  115 (401)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  115 (401)
                      .|.+..+...|..+...|+.+.|- +|..|..+ ..+.+...++.++......++.+.+.            .+...+|.
T Consensus        22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt   87 (1088)
T KOG4318|consen   22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK------------EPLADTYT   87 (1088)
T ss_pred             CCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC------------CCchhHHH
Confidence            344567888899999999998887 77777654 35667778888888878887766554            22267899


Q ss_pred             HHHHHHHhcCChHH---HHHHHHHHh----hCCCCCCHH--------------HHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765          116 HSIVLYGQANMIDH---AMQTFEEMD----KYGLRQSVD--------------ALNALLLGCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       116 ~li~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~~~~  174 (401)
                      .+..+|...|+...   +.+.+..+.    ..|+.-...              .-...+......|.++.+++++..++.
T Consensus        88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv  167 (1088)
T KOG4318|consen   88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV  167 (1088)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            99999999988544   333222221    122211111              112234445566778888888877764


Q ss_pred             hcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh
Q 015765          175 VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV  254 (401)
Q Consensus       175 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  254 (401)
                      .....|...    +++-+..  ++....++.+......-.|++.+|..++..-...|+.+.|..++.+|.+.|++.+..-
T Consensus       168 sa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy  241 (1088)
T KOG4318|consen  168 SAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY  241 (1088)
T ss_pred             ccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence            432222222    2443332  2333444444333321268999999999999999999999999999999999888776


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ  334 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  334 (401)
                      |-.++-+   .++...+..++.-|.+.|+.|+..|+...+..+..+|....+        +.| .+....+.+-...-.-
T Consensus       242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAavrsaa~  309 (1088)
T KOG4318|consen  242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAVRSAAC  309 (1088)
T ss_pred             chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHHHHHHh
Confidence            6666655   788999999999999999999999999888888776552222        222 2333333333332222


Q ss_pred             cC-----CHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          335 GG-----EYET-----ALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       335 ~g-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      .|     +.+.     ....+.+..-.|+.....+|....+ ...+|+-++..++...+..
T Consensus       310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~n  369 (1088)
T KOG4318|consen  310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLN  369 (1088)
T ss_pred             cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcC
Confidence            33     1111     1222222223366666644444444 4457999999999888754

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=1.2e-06  Score=77.94  Aligned_cols=343  Identities=15%  Similarity=0.069  Sum_probs=199.8

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      .+-.-+......+++++|+.........  .+.|...+..-+-++.+.++|++|+.+.+.-   +....+..++-.-..+
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFFFEKAYC   88 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhhHHHHHH
Confidence            3444456777788999999988887665  4556777888888889999999999766552   2212211121222334


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcC-----------------------
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG-----------------------  177 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------  177 (401)
                      ..+.++.|+|+..++-..    +.+..+...-...+.+.|++++|.++|+.+.+...                       
T Consensus        89 ~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~  164 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL  164 (652)
T ss_pred             HHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence            457888999988888332    22333555556778888999999999888843210                       


Q ss_pred             ----CCCCHHhHHHHH---HHHHhcCChhHHHHHHHHHHhCCC------CCC-------HH-hHHHHHHHHHccCChHHH
Q 015765          178 ----IEPNSETYNKVI---KSFCESGDSSSVYSILAEMRRKSI------RPN-------AT-DFGLLLAGFYKEHKYEDV  236 (401)
Q Consensus       178 ----~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~------~~~-------~~-~~~~ll~~~~~~~~~~~a  236 (401)
                          ..| ..+|..+.   ..+...|++.+|+++++...+.+.      .-+       .. .-..+.-.+...|+..+|
T Consensus       165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence                111 12333333   345667999999999988733210      001       11 112344456678888888


Q ss_pred             HHHHHHHHHcCCCCCch----hHHHH-----------------------------------------------HHHHHh-
Q 015765          237 GKVLQMMEKCGIASGVN----VYNIR-----------------------------------------------IQSLCK-  264 (401)
Q Consensus       237 ~~~~~~~~~~~~~~~~~----~~~~l-----------------------------------------------l~~~~~-  264 (401)
                      ..++......+. +|..    .-|.+                                               +..|.. 
T Consensus       244 ~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk  322 (652)
T KOG2376|consen  244 SSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK  322 (652)
T ss_pred             HHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            888887766542 2211    00111                                               111100 


Q ss_pred             -------------------------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHH--
Q 015765          265 -------------------------------LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA--  311 (401)
Q Consensus       265 -------------------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~--  311 (401)
                                                     ......+..++...-+....-.....-.++......|+++.|.+++.  
T Consensus       323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~  402 (652)
T KOG2376|consen  323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF  402 (652)
T ss_pred             HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                                           01122233333333222111123344556666778899999999988  


Q ss_pred             ------HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHccCCHHHHHHH
Q 015765          312 ------SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK--GWVPHFS----TMKSLVTGLASISKVAEANEL  379 (401)
Q Consensus       312 ------~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~g~~~~a~~~  379 (401)
                            .+.+.+..|  .+...+...+.+.++.+.|..++.+....  .-.+...    ++.-++..-.+.|+.++|..+
T Consensus       403 ~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~  480 (652)
T KOG2376|consen  403 LESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL  480 (652)
T ss_pred             hhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence                  444444334  45556666677777766666666665543  1111112    233333344567999999999


Q ss_pred             HHHHHhcCCCCcccchh
Q 015765          380 IGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       380 ~~~~~~~~~~~~~~~~~  396 (401)
                      ++++.+.+|+|..+.-.
T Consensus       481 leel~k~n~~d~~~l~~  497 (652)
T KOG2376|consen  481 LEELVKFNPNDTDLLVQ  497 (652)
T ss_pred             HHHHHHhCCchHHHHHH
Confidence            99999988888765443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.09  E-value=2e-06  Score=77.45  Aligned_cols=131  Identities=10%  Similarity=0.061  Sum_probs=87.4

Q ss_pred             HhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChH
Q 015765           49 LKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMID  128 (401)
Q Consensus        49 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  128 (401)
                      +...|+.++|.+..+...+.  ...+...|+.+.-.+....++++|++.|.......  +.|.+++..+...-++.|+++
T Consensus        51 L~~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             hhcccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhh
Confidence            45566777888777766543  44466788888888888888999999988877332  555677777776666777777


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh
Q 015765          129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET  184 (401)
Q Consensus       129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  184 (401)
                      .....-..+.+.. +.....|..+..++.-.|+...|..++++..+.....|+...
T Consensus       127 ~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~  181 (700)
T KOG1156|consen  127 GYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED  181 (700)
T ss_pred             hHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence            7766666666553 334445666666666677777777777777554332344443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.07  E-value=1.7e-06  Score=71.99  Aligned_cols=307  Identities=11%  Similarity=0.032  Sum_probs=190.4

Q ss_pred             ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-H
Q 015765           73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN-A  151 (401)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~  151 (401)
                      .+..-.--+-..+...|++..|+.-|......  .|.+-..+-.-...|...|+-.-|+.-+...++.  +||-..-. -
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ  111 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ  111 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence            34444555566666777777777777766522  2332333333345566677777777777776665  45533221 1


Q ss_pred             HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH----h------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 015765          152 LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE----T------------YNKVIKSFCESGDSSSVYSILAEMRRKSIRP  215 (401)
Q Consensus       152 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  215 (401)
                      -...+.+.|.++.|..=|+.+.+.   .|+..    .            ....+..+.-.|+...|++.+..+.+. .+.
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~W  187 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPW  187 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccc
Confidence            223456777777777777777654   33211    1            112333455567888888888887776 356


Q ss_pred             CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH----HH
Q 015765          216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT----YK  291 (401)
Q Consensus       216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~  291 (401)
                      |...+..-..+|...|++..|+.-++...+.. ..++.++--+-..+...|+.+.++...++..+.  .||...    |.
T Consensus       188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK  264 (504)
T KOG0624|consen  188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK  264 (504)
T ss_pred             hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence            77777777788888888888887777766653 334555556667777778888887777777665  344322    11


Q ss_pred             HH---------HHHHhcCCChHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 015765          292 HL---------IHGFGKEGNLEGAKKLFASMTNGGCEPDSYC---FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST  359 (401)
Q Consensus       292 ~l---------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  359 (401)
                      .+         +......+++.++.+..+...+.........   +..+-.++...|++.+|++...+.++.. +.|+.+
T Consensus       265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~  343 (504)
T KOG0624|consen  265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQV  343 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHH
Confidence            11         1223456777777777777766532212222   2334455566778888888888877653 334777


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          360 MKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      +.--..+|.-...++.|+.-|+...+..+.|.
T Consensus       344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            87778888888888888888888877766554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.05  E-value=1.5e-06  Score=78.16  Aligned_cols=336  Identities=10%  Similarity=0.017  Sum_probs=193.9

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-----CCCCchh
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRP-----DLRQNER  112 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~  112 (401)
                      ....+...+..+.+.+-|+-++.+++....-     ++..-+-.|..++..+++++|.+.+.....++     ..+++..
T Consensus       137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~q  211 (835)
T KOG2047|consen  137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQ  211 (835)
T ss_pred             hccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhh
Confidence            3445777888888888888888888876543     34446667888899999999999988877322     1244456


Q ss_pred             HHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765          113 FHVHSIVLYGQANMI---DHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK  187 (401)
Q Consensus       113 ~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  187 (401)
                      .|..+-....+.-+.   -.+..++..+...  -+|  ...|.+|.+-|++.|.+++|.++|++....   .....-|..
T Consensus       212 lw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~  286 (835)
T KOG2047|consen  212 LWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQ  286 (835)
T ss_pred             HHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHH
Confidence            666665555544332   2233344444332  123  356888999999999999999999888654   344444555


Q ss_pred             HHHHHHhcC----------------------ChhHHHHHHHHHHhCC-----------CCCCHHhHHHHHHHHHccCChH
Q 015765          188 VIKSFCESG----------------------DSSSVYSILAEMRRKS-----------IRPNATDFGLLLAGFYKEHKYE  234 (401)
Q Consensus       188 l~~~~~~~~----------------------~~~~a~~~~~~~~~~~-----------~~~~~~~~~~ll~~~~~~~~~~  234 (401)
                      +.++|++-.                      +++-.+..|+.+...+           -+-+...|..-+.  ...|+..
T Consensus       287 ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~  364 (835)
T KOG2047|consen  287 IFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAA  364 (835)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChH
Confidence            555554321                      1222333344433321           0112222322222  2345566


Q ss_pred             HHHHHHHHHHHcCCCC------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHhcCCChHH
Q 015765          235 DVGKVLQMMEKCGIAS------GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN---LDTYKHLIHGFGKEGNLEG  305 (401)
Q Consensus       235 ~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~~~~~~  305 (401)
                      +...++.++.+. +.|      -...|..+...|-..|+++.|..+|++..+-..+--   ..+|..-...=.+..+++.
T Consensus       365 ~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~  443 (835)
T KOG2047|consen  365 EQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA  443 (835)
T ss_pred             HHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence            666777666553 222      134577777888888888888888887776533211   2344444444456667777


Q ss_pred             HHHHHHHHHhCCCC----------C-------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015765          306 AKKLFASMTNGGCE----------P-------DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA  368 (401)
Q Consensus       306 a~~~~~~m~~~~~~----------~-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (401)
                      |+++++.....--.          |       +...|...++.-...|-++....+++++++..+. ++.........+-
T Consensus       444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLE  522 (835)
T KOG2047|consen  444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLE  522 (835)
T ss_pred             HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence            77777766532100          0       1233444455555566777777777777666532 2333333333344


Q ss_pred             ccCCHHHHHHHHHHHHhcC
Q 015765          369 SISKVAEANELIGLMKKRF  387 (401)
Q Consensus       369 ~~g~~~~a~~~~~~~~~~~  387 (401)
                      .+.-++++.+++++-...|
T Consensus       523 eh~yfeesFk~YErgI~LF  541 (835)
T KOG2047|consen  523 EHKYFEESFKAYERGISLF  541 (835)
T ss_pred             hhHHHHHHHHHHHcCCccC
Confidence            4555666666666655553

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=3.8e-07  Score=74.33  Aligned_cols=292  Identities=13%  Similarity=0.115  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-HHH
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL-LLG  155 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~  155 (401)
                      -+++.+..+.+..++++|++++....+..  +.+..-...+..+|.+..++..|...++++-..  -|...-|... ...
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            46667777788889999999888766433  323456777788888889999999999988765  4555555433 456


Q ss_pred             HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765          156 CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS--FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY  233 (401)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  233 (401)
                      +.+.+.+.+|+.+...|.+    .++...-..-+.+  ....+|+..+..++++....|   +..+.........+.|++
T Consensus        88 LY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy  160 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY  160 (459)
T ss_pred             HHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence            7778888899999888853    2333322222222  345678888888888876443   445555555566788999


Q ss_pred             HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------cCH-------------
Q 015765          234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK-------------PNL-------------  287 (401)
Q Consensus       234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~-------------  287 (401)
                      +.|.+-|+...+.+.-.....||..+.-| +.|+++.|++...++.++|++             ||+             
T Consensus       161 EaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa  239 (459)
T KOG4340|consen  161 EAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA  239 (459)
T ss_pred             HHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence            99999998887765444566777666544 568899999999988887653             121             


Q ss_pred             --HHHHHHHHHHhcCCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015765          288 --DTYKHLIHGFGKEGNLEGAKKLFASMTNG-GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV  364 (401)
Q Consensus       288 --~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  364 (401)
                        ..+|.-...+.+.|+++.|.+-+.+|.-. .-..|+.|...+.-.= ..+++-+..+-+.-+...+ +....||..++
T Consensus       240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL  317 (459)
T KOG4340|consen  240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLL  317 (459)
T ss_pred             HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence              12455566778889999999888888633 2344556655443221 2344444455455555554 34567888888


Q ss_pred             HHHHccCCHHHHHHHHHH
Q 015765          365 TGLASISKVAEANELIGL  382 (401)
Q Consensus       365 ~~~~~~g~~~~a~~~~~~  382 (401)
                      -.||+..-++.|-.++-+
T Consensus       318 llyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  318 LLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHhhhHHHhHHHHHHhh
Confidence            889998888888877654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.02  E-value=3e-07  Score=89.15  Aligned_cols=227  Identities=15%  Similarity=0.108  Sum_probs=129.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH
Q 015765          112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQ-----SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN  186 (401)
Q Consensus       112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  186 (401)
                      ..|-.-|..+...++.+.|.+++++.+.. +.+     -...|.++++.-...|.-+...++|++..+-   --....|.
T Consensus      1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~~ 1534 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVHL 1534 (1710)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHHH
Confidence            35555555666666666666666665542 111     1234555666555566666666666666321   11123456


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCchhHHHHHHHHHhc
Q 015765          187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA-SGVNVYNIRIQSLCKL  265 (401)
Q Consensus       187 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~  265 (401)
                      .|...|.+.+..++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-.. .......-.+..-.+.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            6666666666777777777776554 2334556666666666666666666666666554111 1233344445555566


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCHHHHHH
Q 015765          266 KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS--YCFFMFTYFLCQGGEYETALK  343 (401)
Q Consensus       266 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~  343 (401)
                      |+.+++..+|+.....-.+ -...|+..++.-.++|+.+.+..+|++....++.|-.  +.|...+..=-+.|+-+.++.
T Consensus      1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence            7777777777766655322 3556666777666777777777777777766655542  345555554444455444333


Q ss_pred             H
Q 015765          344 V  344 (401)
Q Consensus       344 ~  344 (401)
                      +
T Consensus      1693 V 1693 (1710)
T KOG1070|consen 1693 V 1693 (1710)
T ss_pred             H
Confidence            3

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=2.6e-06  Score=71.26  Aligned_cols=126  Identities=10%  Similarity=0.062  Sum_probs=79.7

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHccCCHHHHH
Q 015765          264 KLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF-FMFTYFLCQGGEYETAL  342 (401)
Q Consensus       264 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~  342 (401)
                      -..++++.+-.++.+..--..-|... ..+.++++..|++.+|+++|-.+....++. ..+| ..+.++|.+.+.++.|.
T Consensus       371 L~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn-~~~Y~s~LArCyi~nkkP~lAW  448 (557)
T KOG3785|consen  371 LSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKN-KILYKSMLARCYIRNKKPQLAW  448 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhh-hHHHHHHHHHHHHhcCCchHHH
Confidence            33445555555554444322222222 346778888899999999997776554443 4455 45668889999999998


Q ss_pred             HHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765          343 KVCRASMAKGWVPHF-STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       343 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      .++-++.   -+.+. .....+..-|.+.+.+--|-+.|+.+.. ..|++..|.
T Consensus       449 ~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~pEnWe  498 (557)
T KOG3785|consen  449 DMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPTPENWE  498 (557)
T ss_pred             HHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCCccccC
Confidence            8765443   22222 2344556778899998888888887754 445566563

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.99  E-value=1.8e-05  Score=72.93  Aligned_cols=138  Identities=14%  Similarity=0.030  Sum_probs=107.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLC  333 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~  333 (401)
                      |......+.+.++.++|...+.+.... .......|......+...|..++|.+.|......  .|+ ......+..++.
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence            444556667777788887777766554 2335566777777788889999999999888864  454 567889999999


Q ss_pred             ccCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc-ccchh
Q 015765          334 QGGEYETALK--VCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG-DMWNA  396 (401)
Q Consensus       334 ~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~  396 (401)
                      +.|+..-|..  ++..+.+.+ +.+...|..+...+.+.|+.++|.+-|....+..+.++ ..|..
T Consensus       730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~  794 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSN  794 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccccc
Confidence            9998888888  999999887 56889999999999999999999999999888754443 33443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.94  E-value=1.1e-05  Score=81.32  Aligned_cols=310  Identities=8%  Similarity=-0.041  Sum_probs=189.3

Q ss_pred             HHHHHHhCCCchHHHHHHHHhhhC-CCC----CC--chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHH
Q 015765           81 AVSKLSQANHFNAISQLLEELKTR-PDL----RQ--NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV----DAL  149 (401)
Q Consensus        81 l~~~~~~~~~~~~a~~~~~~~~~~-~~~----~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~  149 (401)
                      ....+...|+++++..+++..... ...    .+  .......+...+...|++++|...+++..+.-...+.    ...
T Consensus       415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~  494 (903)
T PRK04841        415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT  494 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            344556778888888888776521 110    11  1122222334556788999999988887653111121    234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhchhhcCC--CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHH
Q 015765          150 NALLLGCILSKNYEEVKRIFTEFPKVYGI--EP--NSETYNKVIKSFCESGDSSSVYSILAEMRRK----SIR--P-NAT  218 (401)
Q Consensus       150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~  218 (401)
                      +.+...+...|++++|...+++......-  .+  ...++..+...+...|+++.|...+++....    +..  + ...
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~  574 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF  574 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence            55556677789999988888877542110  11  1234455666778889999998888776442    211  1 122


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcC--CCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHH--HH
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCG--IAS--GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG--IKPNLD--TY  290 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~--~~  290 (401)
                      .+..+...+...|++++|...+++.....  ..+  ....+..+...+...|++++|...+++.....  ......  ..
T Consensus       575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~  654 (903)
T PRK04841        575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN  654 (903)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence            34455566777799999988887765421  111  12334445667778899999988888775421  111110  00


Q ss_pred             --HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 015765          291 --KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS---YCFFMFTYFLCQGGEYETALKVCRASMAK----GWVP-HFSTM  360 (401)
Q Consensus       291 --~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~  360 (401)
                        ...+..+...|+.+.|.+++............   ..+..+..++...|+.++|...+++....    |... ...+.
T Consensus       655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~  734 (903)
T PRK04841        655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL  734 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence              11224445578888888887765542211111   11345667788899999999999887664    3222 23456


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          361 KSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       361 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      ..+..++.+.|+.++|...+.+..+...+.
T Consensus       735 ~~la~a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        735 ILLNQLYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            677788899999999999999998875443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4.4e-06  Score=73.66  Aligned_cols=334  Identities=12%  Similarity=0.073  Sum_probs=219.3

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcC
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQAN  125 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~  125 (401)
                      ....+.|+++.|+..|-.+..-  .|++-..|..-..+++..|++++|.+=-.+-.. .|..   ..-|.....++.-.|
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w---~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW---AKGYSRKGAALFGLG   84 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch---hhHHHHhHHHHHhcc
Confidence            3456788999999999887644  344788999999999999999999887766653 3322   457889999999999


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CC-----------------------------------------
Q 015765          126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILS---KN-----------------------------------------  161 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-----------------------------------------  161 (401)
                      ++++|+.-|.+-++.. +.+...+.-+..++...   ++                                         
T Consensus        85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             cHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            9999999999988765 44555555555554111   00                                         


Q ss_pred             -------HHHHHHHHHhch----hh-------cCCCC------------CH----------HhHHHHHHHHHhcCChhHH
Q 015765          162 -------YEEVKRIFTEFP----KV-------YGIEP------------NS----------ETYNKVIKSFCESGDSSSV  201 (401)
Q Consensus       162 -------~~~a~~~~~~~~----~~-------~~~~~------------~~----------~~~~~l~~~~~~~~~~~~a  201 (401)
                             +..+.-.+....    ..       .+..|            |.          .-..-+.++..+..+++.|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                   000111100000    00       00011            00          1133455556666777777


Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHH-------HHHHhcCCHHHHHHH
Q 015765          202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI-------QSLCKLKRSEEAKAL  274 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-------~~~~~~~~~~~a~~~  274 (401)
                      .+-+.......  -+..-++....+|...|.+..+...-....+.|.. ...-|+.+.       .+|.+.++++.+...
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY  320 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence            77777776653  34555566667777888777777666666555432 222333333       355556778888888


Q ss_pred             HHHHHHCCCCcCHHHH-------------------------HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 015765          275 LDGMLSRGIKPNLDTY-------------------------KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFT  329 (401)
Q Consensus       275 ~~~~~~~~~~p~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  329 (401)
                      |.+....-..|+..+=                         ..=...+.+.|++..|+..|.++++.. +-|...|....
T Consensus       321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA  399 (539)
T KOG0548|consen  321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA  399 (539)
T ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence            8776554333333221                         111344667889999999999988875 45677888888


Q ss_pred             HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          330 YFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      -+|.+.|.+..|.+-.+..++.+ ++....|..-..++....++++|.+.|++.++..|.+.
T Consensus       400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~  460 (539)
T KOG0548|consen  400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA  460 (539)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence            99999999999998888877764 44455566666667777889999999999888776654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.90  E-value=1.6e-05  Score=71.88  Aligned_cols=337  Identities=15%  Similarity=0.142  Sum_probs=203.0

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      .+..++..+.. +++..-+.+.+......+-.++  +.....-.+...|+-++|.+...... .++... ...|..+.-.
T Consensus        10 lF~~~lk~yE~-kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~gl-r~d~~S-~vCwHv~gl~   84 (700)
T KOG1156|consen   10 LFRRALKCYET-KQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGL-RNDLKS-HVCWHVLGLL   84 (700)
T ss_pred             HHHHHHHHHHH-HHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHh-ccCccc-chhHHHHHHH
Confidence            45555555543 3456666666555543223233  44444445567789999999988877 344444 6678888888


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS  200 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (401)
                      +....++++|++.|......+ +.|...|.-+.-.-++.|+++.......++.+..  +.....|..+..++.-.|+...
T Consensus        85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999887 6688888888777788889988888877776541  3344567888888888999999


Q ss_pred             HHHHHHHHHhCC-CCCCHHhHHHHH------HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 015765          201 VYSILAEMRRKS-IRPNATDFGLLL------AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA  273 (401)
Q Consensus       201 a~~~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  273 (401)
                      |.+++++..+.. ..|+...+.-..      ......|..++|.+.+..-... +......-.+-...+.+.+++++|..
T Consensus       162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence            999999987764 245655544322      2233445555555444433222 11111112223344445555555555


Q ss_pred             HHHHHHHCCCCcCHHHHHHHHH-HHhcCCC-----------------------------------hHHHHHHHHHHHhCC
Q 015765          274 LLDGMLSRGIKPNLDTYKHLIH-GFGKEGN-----------------------------------LEGAKKLFASMTNGG  317 (401)
Q Consensus       274 ~~~~~~~~~~~p~~~~~~~li~-~~~~~~~-----------------------------------~~~a~~~~~~m~~~~  317 (401)
                      ++..+...  .||..-|..... ++.+..+                                   .+..-+++..+.+.|
T Consensus       241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg  318 (700)
T KOG1156|consen  241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG  318 (700)
T ss_pred             HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence            55555544  233332221111 1110000                                   000011111111111


Q ss_pred             C----------------------------------------------CCCHhhH--HHHHHHHHccCCHHHHHHHHHHHH
Q 015765          318 C----------------------------------------------EPDSYCF--FMFTYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       318 ~----------------------------------------------~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~  349 (401)
                      +                                              +|....|  ..++..+-..|+++.|..+++.++
T Consensus       319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI  398 (700)
T KOG1156|consen  319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI  398 (700)
T ss_pred             CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence            1                                              3343333  345666778899999999998888


Q ss_pred             HCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          350 AKGWVPH-FSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       350 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      ++  .|+ +..|..-.+.+...|++++|...+++..+...+|
T Consensus       399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD  438 (700)
T KOG1156|consen  399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD  438 (700)
T ss_pred             cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence            65  444 3556666788888899999999998888765444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.87  E-value=4e-06  Score=70.18  Aligned_cols=328  Identities=9%  Similarity=0.015  Sum_probs=168.4

Q ss_pred             HHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC
Q 015765           46 IARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN  125 (401)
Q Consensus        46 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  125 (401)
                      +.-+-...|+..|+.+++.......-. ...+---+..++-+.|++++|...+..+.... .++ ......+.-++.-.|
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EE-E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~-~el~vnLAcc~FyLg  105 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREE-EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAP-AELGVNLACCKFYLG  105 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhh-hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCC-cccchhHHHHHHHHH
Confidence            455566778888888887654322111 11222335567788999999999999887533 333 456666776677778


Q ss_pred             ChHHHHHHHHHHhhC--------------CCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC
Q 015765          126 MIDHAMQTFEEMDKY--------------GLR-----------QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP  180 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~--------------~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  180 (401)
                      .+.+|..+-....+.              |-.           .+...--+|.......-.+++|+++|......   .|
T Consensus       106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~  182 (557)
T KOG3785|consen  106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NP  182 (557)
T ss_pred             HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Ch
Confidence            888888766554321              000           00111112222222233567888888887644   56


Q ss_pred             CHHhHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH--------------HHH
Q 015765          181 NSETYNKVI-KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM--------------MEK  245 (401)
Q Consensus       181 ~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------------~~~  245 (401)
                      +-...|.-+ -+|.+..-++-+.+++.-..+. ++.+....+.......+.=.-..|++-.++              +.+
T Consensus       183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r  261 (557)
T KOG3785|consen  183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR  261 (557)
T ss_pred             hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence            666665544 4456666677777777766554 333333333333222221111111111111              111


Q ss_pred             cCC------------CCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-----HhcCCCh
Q 015765          246 CGI------------ASG-----VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-----FGKEGNL  303 (401)
Q Consensus       246 ~~~------------~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-----~~~~~~~  303 (401)
                      .++            -|.     ...--.++-.|.+.+++.+|..+.+++.-.  .|-......++.+     .......
T Consensus       262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHl  339 (557)
T KOG3785|consen  262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHL  339 (557)
T ss_pred             cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHH
Confidence            110            000     112233444567778888888877665432  2222222222111     1111122


Q ss_pred             HHHHHHHHHHHhCCC------------------------------------CCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          304 EGAKKLFASMTNGGC------------------------------------EPDSYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       304 ~~a~~~~~~m~~~~~------------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      .-|.+.|+..-+++.                                    ..|.+. -.+..+.+..|++.+|+++|-.
T Consensus       340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~  418 (557)
T KOG3785|consen  340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIR  418 (557)
T ss_pred             HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhh
Confidence            233333333222221                                    122222 2345677778888888888866


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          348 SMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM  383 (401)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  383 (401)
                      .....++.+..-...|.+.|.+.+.++-|..++-++
T Consensus       419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~  454 (557)
T KOG3785|consen  419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT  454 (557)
T ss_pred             hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence            554444444444456667778888888777665443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.86  E-value=3.8e-06  Score=81.90  Aligned_cols=245  Identities=13%  Similarity=0.077  Sum_probs=179.7

Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH---HhHHHHHHHHHhcCChhHHHHHH
Q 015765          129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS---ETYNKVIKSFCESGDSSSVYSIL  205 (401)
Q Consensus       129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~  205 (401)
                      .|.+. +...... +.+...|-..|......++.++|.++.++.....++.-..   ..|.++++.-..-|.-+...++|
T Consensus      1443 saeDf-erlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDF-ERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CHHHH-HHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            34443 3333332 5567778888888999999999999999887654333322   35666666666667778888999


Q ss_pred             HHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 015765          206 AEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP  285 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  285 (401)
                      +++.+.  ......|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..++.+..+.-.+-
T Consensus      1521 eRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1521 ERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            998775  223566888899999999999999999999776 33567789999999999999999999999887762221


Q ss_pred             -CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 015765          286 -NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF--STMKS  362 (401)
Q Consensus       286 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~  362 (401)
                       ........+..-.+.|+.+++..+|+..+..- +--...|+..|+.-.+.|+.+.+..+|++.+..++.|--  ..|..
T Consensus      1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred             hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence             12334444555568899999999999888763 234568999999999999999999999999998876643  45666


Q ss_pred             HHHHHHccCCHHHHHHH
Q 015765          363 LVTGLASISKVAEANEL  379 (401)
Q Consensus       363 l~~~~~~~g~~~~a~~~  379 (401)
                      .+..--.+|+-+.+..+
T Consensus      1677 wLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHHHHhcCchhhHHHH
Confidence            66665666765544443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.85  E-value=9.4e-07  Score=73.78  Aligned_cols=189  Identities=14%  Similarity=0.090  Sum_probs=128.0

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc--h
Q 015765          179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN---ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV--N  253 (401)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~  253 (401)
                      +.....+..+...+.+.|+++.|...|+++.... +.+   ..++..+..++...|++++|...++.+.+.......  .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            3455667778888889999999999999887652 222   246677788888999999999999998876422111  1


Q ss_pred             hHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhh
Q 015765          254 VYNIRIQSLCKL--------KRSEEAKALLDGMLSRGIKPNL-DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYC  324 (401)
Q Consensus       254 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  324 (401)
                      ++..+..++...        |++++|.+.|+.+.+..  |+. ..+..+.....    ...       ..       ...
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~-------~~-------~~~  168 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN-------RL-------AGK  168 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH-------HH-------HHH
Confidence            344445555543        67788888888887663  332 22222211100    000       00       011


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765          325 FFMFTYFLCQGGEYETALKVCRASMAKG--WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  388 (401)
                      ...+...+.+.|++++|...+++..+..  -+.....+..+..++.+.|++++|..+++.+...+|
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            1245667889999999999999988763  123457888999999999999999999999988775

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.85  E-value=1.9e-06  Score=78.60  Aligned_cols=221  Identities=13%  Similarity=0.050  Sum_probs=175.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 015765          143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL  222 (401)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (401)
                      +|-...-..+...+...|-...|..+|+++.          .|.-++.+|+..|+..+|..+..+..+  -+||...|..
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~  462 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL  462 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence            4444455567778889999999999998873          377789999999999999999988877  3788999998


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCC
Q 015765          223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN  302 (401)
Q Consensus       223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~  302 (401)
                      +.+.....--+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.. ..-..+|.....+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            888877777788888888765433       11112222334789999999998877663 2356788888888889999


Q ss_pred             hHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 015765          303 LEGAKKLFASMTNGGCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIG  381 (401)
Q Consensus       303 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  381 (401)
                      +..|.+.|..-...  .| +...|+.+-.+|.+.|+-.+|...+.+..+.+ .-+..+|...+....+.|.+++|++.+.
T Consensus       535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            99999999988864  45 46789999999999999999999999999987 5566778888888889999999999999


Q ss_pred             HHHhc
Q 015765          382 LMKKR  386 (401)
Q Consensus       382 ~~~~~  386 (401)
                      ++...
T Consensus       612 rll~~  616 (777)
T KOG1128|consen  612 RLLDL  616 (777)
T ss_pred             HHHHh
Confidence            88654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1.5e-05  Score=75.48  Aligned_cols=230  Identities=15%  Similarity=0.158  Sum_probs=131.7

Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      .+...+-+++|..+|++.-     .+....+.|+.-   -+..+.|.+.-++..       ....|..+..+-.+.|.+.
T Consensus      1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchH
Confidence            3444455566666655542     244444444432   345555555554442       2346888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      +|.+-|-+.      .|...|..+++...+.|.+++..+.+....+..-.|..  -+.++-+|++.++..+.++++.   
T Consensus      1122 dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred             HHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---
Confidence            888777552      36778888999999999999998888888777655544  4568888888888877665542   


Q ss_pred             HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC--------------------CCCCCHhhHHHHHHHHHccCCHH
Q 015765          280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG--------------------GCEPDSYCFFMFTYFLCQGGEYE  339 (401)
Q Consensus       280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~~~~~~~~~li~~~~~~g~~~  339 (401)
                          -||......+..-|...|.++.|.-+|......                    ....+..||..+-.+|...+.+.
T Consensus      1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred             ----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence                344444444455555555555554444322100                    00112233433333333333222


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      -|     .|...++.....-..-++..|-..|-+++.+.+++...
T Consensus      1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            11     12222333344555666677777777777766666544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.83  E-value=8.9e-07  Score=73.92  Aligned_cols=188  Identities=11%  Similarity=0.009  Sum_probs=122.3

Q ss_pred             CccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---H
Q 015765           72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV---D  147 (401)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~  147 (401)
                      ......+......+...|+++.|...|+++.. .|..+.....+..+..++...|++++|...++++.+... .+.   .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHH
Confidence            34556777788888889999999999988873 333232234667778888899999999999999887542 122   2


Q ss_pred             HHHHHHHHHHhc--------CCHHHHHHHHHhchhhcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 015765          148 ALNALLLGCILS--------KNYEEVKRIFTEFPKVYGIEPNS-ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT  218 (401)
Q Consensus       148 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  218 (401)
                      ++..+..++...        |+.++|.+.|+.+.+.   .|+. ..+..+.....    ...      ..        ..
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~------~~--------~~  167 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRN------RL--------AG  167 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHH------HH--------HH
Confidence            344455555544        6788888888888765   3443 22222211100    000      00        00


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGI--ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      ....+...+.+.|++++|...++...+...  +.....+..+..++.+.|++++|..+++.+...
T Consensus       168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            112455667888889999888888877521  123467778888888899999998888887765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.83  E-value=1.7e-06  Score=76.90  Aligned_cols=252  Identities=12%  Similarity=0.058  Sum_probs=180.9

Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      -+.+.|++.+|.-.|+..++.+ +-+...|..|...-...++-..|+..+.+..+-.  +-|....-.|.-.|...|.-.
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence            3457888999999999888876 6678899988888888888888998888887542  445567788888899999888


Q ss_pred             HHHHHHHHHHhCCCC--------CCHHhHHHHHHHHHccCChHHHHHHHHHH-HHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765          200 SVYSILAEMRRKSIR--------PNATDFGLLLAGFYKEHKYEDVGKVLQMM-EKCGIASGVNVYNIRIQSLCKLKRSEE  270 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~  270 (401)
                      .|++.++..+....+        ++...-..  ..+..........++|-++ ...+..+|..+...|--.|.-.|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999887554211        00000000  1112222334445555444 444545677788888888889999999


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          271 AKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS-YCFFMFTYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       271 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~  349 (401)
                      |.+.|+....... -|...||.|...++...+.++|+..|++.++.  +|+- ....-|.-.|...|.+++|.+.|-.++
T Consensus       449 aiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  449 AVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            9999999888632 25788999999999999999999999999984  6763 344556677889999999999887655


Q ss_pred             HCC---------CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 015765          350 AKG---------WVPHFSTMKSLVTGLASISKVAEANEL  379 (401)
Q Consensus       350 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~  379 (401)
                      ...         ..++..+|..|=.++.-.++.+-+.++
T Consensus       526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            431         122345777777777777777655544

>PLN02789 farnesyltranstransferase

Probab=98.83  E-value=8.6e-06  Score=70.32  Aligned_cols=142  Identities=8%  Similarity=-0.026  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       115 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      ..+-..+...++.++|+.+++++++.. +-+..+|+.-..++...| ++++++..++++.+..  +.+..+|+.....+.
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~  117 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHH
Confidence            333344455566666666666666553 333444554444444444 4566666666665432  333344544433334


Q ss_pred             hcCCh--hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015765          194 ESGDS--SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS  261 (401)
Q Consensus       194 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  261 (401)
                      +.|+.  ++++.+++++.+.. +-+..+|+...-++...|+++++++.++++.+.+. .+...|+....+
T Consensus       118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~v  185 (320)
T PLN02789        118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFV  185 (320)
T ss_pred             HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHH
Confidence            44432  44555555555442 23455555555555555555555555555555442 233344444333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.82  E-value=5.5e-05  Score=69.82  Aligned_cols=343  Identities=13%  Similarity=0.058  Sum_probs=192.9

Q ss_pred             HHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHH-hcCC
Q 015765           48 RLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG-QANM  126 (401)
Q Consensus        48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~  126 (401)
                      .+...|+++.+.+.|+....  ........|..+...+...|.-..|+.+++........+++...+...-..|. +.+.
T Consensus       332 al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~  409 (799)
T KOG4162|consen  332 ALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL  409 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence            33444555555555555432  23334456666666666666666666666655422222332333333333343 3455


Q ss_pred             hHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015765          127 IDHAMQTFEEMDKY--GL--RQSVDALNALLLGCILS-----------KNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS  191 (401)
Q Consensus       127 ~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  191 (401)
                      .++++++-.+....  +.  ......|..+.-+|...           ....++++.+++..+..+..|+..-  .+.--
T Consensus       410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if--~lalq  487 (799)
T KOG4162|consen  410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIF--YLALQ  487 (799)
T ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHH--HHHHH
Confidence            55555555555441  10  11222333333333211           1134566666666544333343332  33344


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015765          192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA  271 (401)
Q Consensus       192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  271 (401)
                      |+..++++.|.+...+..+-+...+...|..+.-.+...+++.+|+.+.+...+.- +.|......-+..-...++.+++
T Consensus       488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~  566 (799)
T KOG4162|consen  488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEA  566 (799)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHH
Confidence            56678888888888888887666678888888888888888888888887664431 11100000001111111222222


Q ss_pred             HHHHHHHH---------------------------------------------------HCC-----------CCcC---
Q 015765          272 KALLDGML---------------------------------------------------SRG-----------IKPN---  286 (401)
Q Consensus       272 ~~~~~~~~---------------------------------------------------~~~-----------~~p~---  286 (401)
                      ......+.                                                   ..|           ..|+   
T Consensus       567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~  646 (799)
T KOG4162|consen  567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW  646 (799)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence            11111110                                                   000           0111   


Q ss_pred             ---HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015765          287 ---LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL  363 (401)
Q Consensus       287 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  363 (401)
                         ...|......+.+.++.++|...+.+..+.. ......|......+...|..++|.+.|......+ +-++....++
T Consensus       647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Al  724 (799)
T KOG4162|consen  647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTAL  724 (799)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence               1123344555667777788877777766542 3345566666677888999999999999888765 4466788899


Q ss_pred             HHHHHccCCHHHHHH--HHHHHHhcCCCCcccchhc
Q 015765          364 VTGLASISKVAEANE--LIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       364 ~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l  397 (401)
                      ...+.+.|+..-|..  ++..+.+..|.+...|-.|
T Consensus       725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L  760 (799)
T KOG4162|consen  725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL  760 (799)
T ss_pred             HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            999999998777777  9999999999999988643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=4.2e-05  Score=68.45  Aligned_cols=196  Identities=8%  Similarity=0.067  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015765           78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI  157 (401)
Q Consensus        78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  157 (401)
                      .-+=++.+...|++++|++...++....  |.+...+..-+.+..+.++|++|+.+.+.-...  ..+..-+..=..+..
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence            3344577889999999999999998443  555677788888889999999999666543321  111111112233445


Q ss_pred             hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----------------------
Q 015765          158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRP----------------------  215 (401)
Q Consensus       158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------  215 (401)
                      +.+..++|+..++-..     +-+..+...-...+.+.|++++|+.+|+.+.+.+.+.                      
T Consensus        91 rlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            7899999999998542     3344466667788899999999999999986653221                      


Q ss_pred             -----CHHhHHHHH---HHHHccCChHHHHHHHHHHHHcC--------CC-----CCc-hhHHHHHHHHHhcCCHHHHHH
Q 015765          216 -----NATDFGLLL---AGFYKEHKYEDVGKVLQMMEKCG--------IA-----SGV-NVYNIRIQSLCKLKRSEEAKA  273 (401)
Q Consensus       216 -----~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~-~~~~~ll~~~~~~~~~~~a~~  273 (401)
                           ...+|..+.   ..+...|++.+|+++++...+.+        ..     ... .+--.+..++-..|+.++|..
T Consensus       166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS  245 (652)
T ss_pred             hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence                 112344333   34567799999999998883221        01     011 123345566778899999999


Q ss_pred             HHHHHHHCC
Q 015765          274 LLDGMLSRG  282 (401)
Q Consensus       274 ~~~~~~~~~  282 (401)
                      ++..+.+..
T Consensus       246 iy~~~i~~~  254 (652)
T KOG2376|consen  246 IYVDIIKRN  254 (652)
T ss_pred             HHHHHHHhc
Confidence            999988774

>PLN02789 farnesyltranstransferase

Probab=98.81  E-value=1.6e-05  Score=68.60  Aligned_cols=207  Identities=5%  Similarity=-0.052  Sum_probs=101.2

Q ss_pred             HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--
Q 015765           85 LSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN-MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN--  161 (401)
Q Consensus        85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  161 (401)
                      +...++.++|+.+.+++....  |.+..+|+.--.++...| ++++++..++++.+.. +.+..+|+.....+.+.|.  
T Consensus        47 l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence            344455555555555555221  222234443333344444 3566666666655544 3344455544434444443  


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc---CCh----H
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE---HKY----E  234 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~----~  234 (401)
                      .++++.+++++.+..  +-|..+|+...-.+.+.|+++++++.++++++.+. -|...|+.....+.+.   |+.    +
T Consensus       124 ~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e  200 (320)
T PLN02789        124 ANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRD  200 (320)
T ss_pred             hHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHH
Confidence            244555555555432  34455566555555566666666666666665532 2444444444333332   111    3


Q ss_pred             HHHHHHHHHHHcCCCCCchhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 015765          235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKL----KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK  299 (401)
Q Consensus       235 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  299 (401)
                      +......++.... +.+...|+.+...+...    ++..+|.+.+.+..+.++ .+......|+..|+.
T Consensus       201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~  267 (320)
T PLN02789        201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence            4444454555443 34556666666666552    233456666666554432 244555555555553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.81  E-value=1.9e-06  Score=69.19  Aligned_cols=120  Identities=9%  Similarity=0.073  Sum_probs=68.1

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhcCCC--hHHH
Q 015765          230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-FGKEGN--LEGA  306 (401)
Q Consensus       230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~--~~~a  306 (401)
                      .++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            445555555555555543 345556666666666666666666666666665322 44555555554 244454  3666


Q ss_pred             HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      .+++++..+.+ +-+...+..+...+...|++++|...|+++.+..
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            66666666543 2244555555666666666666666666666553

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1.5e-05  Score=64.28  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=37.3

Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCC
Q 015765          227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN  302 (401)
Q Consensus       227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~  302 (401)
                      +.+..+.+-|.+.++.|.+..   +..|.+.+..++.+    .+.+.+|.-+|++|-++ ..|+..+.+-...++...|+
T Consensus       147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence            334444444444444444421   23333333333332    23344444444444433 23444444444444444444


Q ss_pred             hHHHHHHHHHHHhC
Q 015765          303 LEGAKKLFASMTNG  316 (401)
Q Consensus       303 ~~~a~~~~~~m~~~  316 (401)
                      +++|..++++.+..
T Consensus       223 ~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  223 YEEAESLLEEALDK  236 (299)
T ss_pred             HHHHHHHHHHHHhc
Confidence            44444444444443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.80  E-value=8.9e-05  Score=65.81  Aligned_cols=156  Identities=10%  Similarity=0.049  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHH
Q 015765          233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFA  311 (401)
Q Consensus       233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~  311 (401)
                      .+....+++++...-...-..+|-.++....+..-++.|..+|.+..+.+..+ ++..+++++..|| .++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            33444444444333212223467778888888888999999999999988776 7788899999886 578999999998


Q ss_pred             HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 015765          312 SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPK  389 (401)
Q Consensus       312 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  389 (401)
                      --++. ...++.--...+..+...++-..+..+|++....++.++  ...|..++.-=..-|+.+.+.++-+++...+|.
T Consensus       426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~  504 (656)
T KOG1914|consen  426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA  504 (656)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence            86654 123344446678888889999999999999999866554  478999999999999999999999998888774


Q ss_pred             C
Q 015765          390 S  390 (401)
Q Consensus       390 ~  390 (401)
                      +
T Consensus       505 ~  505 (656)
T KOG1914|consen  505 D  505 (656)
T ss_pred             h
Confidence            3

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=1.1e-05  Score=64.87  Aligned_cols=255  Identities=16%  Similarity=0.173  Sum_probs=153.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      ++-+.-.|.+..++..-......  +.+...-.-+.++|...|++....   .++..  |-.|.......+.......++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~--~~~~~lqAvr~~a~~~~~e~~   87 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKE--GKATPLQAVRLLAEYLELESN   87 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccc--ccCChHHHHHHHHHHhhCcch
Confidence            34455567777776655554332  123333344556677677654433   33321  214444444444444444444


Q ss_pred             hhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015765          198 SSSVY-SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD  276 (401)
Q Consensus       198 ~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  276 (401)
                      .++-. ++.+.+.......+......-...|++.|++++|++......      +....-.=+..+.+..+++.|.+.++
T Consensus        88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk  161 (299)
T KOG3081|consen   88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK  161 (299)
T ss_pred             hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433 344444444333333444444556788888888888776521      22233333455567778888888888


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          277 GMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       277 ~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      +|.+-.   +..|.+-|..++.+    .+.+..|.-+|++|-+. ..|+..+.+....++...|++++|..++++...+.
T Consensus       162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            888752   55666666655543    45688888888888764 46888888888888888888888888888888875


Q ss_pred             CCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhcCCCC
Q 015765          353 WVPHFSTMKSLVTGLASISKV-AEANELIGLMKKRFPKS  390 (401)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~  390 (401)
                       ..++.+...++-.-...|.. +-..+.+.++....|..
T Consensus       238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence             34566666666555555654 44456677776655543

>PF12854 PPR_1: PPR repeat

Probab=98.80  E-value=7.8e-09  Score=56.24  Aligned_cols=31  Identities=39%  Similarity=0.721  Sum_probs=13.1

Q ss_pred             CCcCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765          283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASM  313 (401)
Q Consensus       283 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m  313 (401)
                      +.||..||++||.+|++.|++++|.++|++|
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3444444444444444444444444444433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.78  E-value=4.1e-05  Score=69.27  Aligned_cols=327  Identities=10%  Similarity=0.038  Sum_probs=171.9

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM  126 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  126 (401)
                      +.+..+++..+....|+.+...-++..-...|...+.-....|-++.++.+++......     +..-+--|..++..++
T Consensus       110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~eeyie~L~~~d~  184 (835)
T KOG2047|consen  110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEAREEYIEYLAKSDR  184 (835)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHHHHHHHHHhccc
Confidence            44444444444444444443332222223345555555555566666666666555221     1224445556666666


Q ss_pred             hHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCCHH---HHHHHHHhchhhcCCCCCH--HhHHHHHHHHHhc
Q 015765          127 IDHAMQTFEEMDKYG------LRQSVDALNALLLGCILSKNYE---EVKRIFTEFPKVYGIEPNS--ETYNKVIKSFCES  195 (401)
Q Consensus       127 ~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~  195 (401)
                      +++|.+.+.......      .+.+...|.-+-+...+.-+.-   ....+++.+...   -+|.  ..|.+|.+-|.+.
T Consensus       185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~  261 (835)
T KOG2047|consen  185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRS  261 (835)
T ss_pred             hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHh
Confidence            666666666554311      1334445555544444332221   223333333322   3443  3577888888888


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC----------------------ChHHHHHHHHHHHHcCC-----
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH----------------------KYEDVGKVLQMMEKCGI-----  248 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~~-----  248 (401)
                      |.+++|..+|++....  ..+..-|..+.++|+.-.                      +++-...-|+.+.+.+.     
T Consensus       262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs  339 (835)
T KOG2047|consen  262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS  339 (835)
T ss_pred             hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence            8888888888887654  223334444444443211                      11222233333333210     


Q ss_pred             ------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------CHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          249 ------ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP------NLDTYKHLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       249 ------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                            +.++..|..-+.  ...|+..+-...+.+..+. +.|      -...|..+...|-..|+.+.|..+|++..+-
T Consensus       340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V  416 (835)
T KOG2047|consen  340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV  416 (835)
T ss_pred             HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence                  112222322222  2345666667777766654 222      1245677777788888888888888887764


Q ss_pred             CCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHccCCHHHH
Q 015765          317 GCEPD---SYCFFMFTYFLCQGGEYETALKVCRASMAKGWV-----------------PHFSTMKSLVTGLASISKVAEA  376 (401)
Q Consensus       317 ~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~a  376 (401)
                      ..+--   ..+|......=.+..+++.|.++++++...--.                 .+...|..+++.--..|-++..
T Consensus       417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest  496 (835)
T KOG2047|consen  417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST  496 (835)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence            32221   345555555556677788888877765432111                 1234555666666667778888


Q ss_pred             HHHHHHHHhc
Q 015765          377 NELIGLMKKR  386 (401)
Q Consensus       377 ~~~~~~~~~~  386 (401)
                      ..+++++.+.
T Consensus       497 k~vYdriidL  506 (835)
T KOG2047|consen  497 KAVYDRIIDL  506 (835)
T ss_pred             HHHHHHHHHH
Confidence            8888887765

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.77  E-value=6.2e-05  Score=76.07  Aligned_cols=340  Identities=12%  Similarity=0.033  Sum_probs=206.0

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY  121 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  121 (401)
                      ...+...+...+++..|+.........   ..-..............|+++.+..+++.+.... ...+..........+
T Consensus       344 h~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~  419 (903)
T PRK04841        344 HRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLA  419 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHH
Confidence            344455566677777777665544221   1111222233344566788888888877653110 011122333445556


Q ss_pred             HhcCChHHHHHHHHHHhhCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHH
Q 015765          122 GQANMIDHAMQTFEEMDKYGL------RQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVI  189 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~  189 (401)
                      ...|+++++..++....+.--      .+.  ......+...+...|++++|...+++..+... ..+    ....+.+.
T Consensus       420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg  498 (903)
T PRK04841        420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLG  498 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHH
Confidence            688999999999987754210      111  11222233456688999999999988754311 111    12445666


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCC---CCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC---CchhHHH
Q 015765          190 KSFCESGDSSSVYSILAEMRRKSI---RPN--ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GIAS---GVNVYNI  257 (401)
Q Consensus       190 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~  257 (401)
                      ..+...|++++|...+++.....-   .+.  ..++..+...+...|++++|...+++....    +...   ....+..
T Consensus       499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  578 (903)
T PRK04841        499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI  578 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            677889999999999988764211   111  234455667788999999999998876542    2111   1233445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCC--CCc--CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCC-CCHhhH-----HH
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRG--IKP--NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCE-PDSYCF-----FM  327 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~--~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~-----~~  327 (401)
                      +...+...|++++|...+.+.....  ..+  ....+..+...+...|++++|.+.+......... .....+     ..
T Consensus       579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~  658 (903)
T PRK04841        579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV  658 (903)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence            5666777899999999998875531  112  2344555666778899999999999887542101 111111     11


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          328 FTYFLCQGGEYETALKVCRASMAKGWVPH---FSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       328 li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      .+..+...|+.+.|.+++...........   ...+..+..++...|+.++|...+++....
T Consensus       659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            22444568999999999876554321111   112456777888999999999999988765

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.75  E-value=1.7e-06  Score=78.93  Aligned_cols=239  Identities=11%  Similarity=-0.014  Sum_probs=174.6

Q ss_pred             CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 015765           70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDAL  149 (401)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  149 (401)
                      ..+|--..-..+...+...|-...|..+++.+.          .+..+|.+|...|+-.+|..+..+..+.  +|+...|
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly  460 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY  460 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence            344444455566778888899999999998864          5777889999999999999988887773  7889999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765          150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK  229 (401)
Q Consensus       150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (401)
                      ..+.+......-+++|.++.+.....        +-..+.....+.++++++.+.|+.-.+.. +....+|-....+..+
T Consensus       461 c~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq  531 (777)
T KOG1128|consen  461 CLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ  531 (777)
T ss_pred             HHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence            98888887777788888888776432        22222223344688888888888876653 4466778888888888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHH
Q 015765          230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL  309 (401)
Q Consensus       230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  309 (401)
                      .+++..+.+.|....... +-+...||.+-.+|.+.|+..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.
T Consensus       532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A  609 (777)
T KOG1128|consen  532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA  609 (777)
T ss_pred             HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence            888888888888877653 3356788999999999999999999998888776 33455566666666788899999988


Q ss_pred             HHHHHhCC-CCCCHhhHHHHHHH
Q 015765          310 FASMTNGG-CEPDSYCFFMFTYF  331 (401)
Q Consensus       310 ~~~m~~~~-~~~~~~~~~~li~~  331 (401)
                      +.++.... ..-|......++..
T Consensus       610 ~~rll~~~~~~~d~~vl~~iv~~  632 (777)
T KOG1128|consen  610 YHRLLDLRKKYKDDEVLLIIVRT  632 (777)
T ss_pred             HHHHHHhhhhcccchhhHHHHHH
Confidence            88877541 11244444444443

>PF12854 PPR_1: PPR repeat

Probab=98.74  E-value=1.4e-08  Score=55.18  Aligned_cols=32  Identities=34%  Similarity=0.829  Sum_probs=15.6

Q ss_pred             CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765          177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEM  208 (401)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  208 (401)
                      |+.||..+|++||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444445555555555555555555444444

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.73  E-value=5.8e-06  Score=75.71  Aligned_cols=263  Identities=14%  Similarity=0.131  Sum_probs=142.5

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015765           78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI  157 (401)
Q Consensus        78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  157 (401)
                      -.+.+.++...|+-++|-++-+.   .++       -...|..|.+.|.+..|.+....=..  +..|......+..+++
T Consensus       592 k~sy~q~l~dt~qd~ka~elk~s---dgd-------~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali  659 (1636)
T KOG3616|consen  592 KRSYLQALMDTGQDEKAAELKES---DGD-------GLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI  659 (1636)
T ss_pred             HHHHHHHHHhcCchhhhhhhccc---cCc-------cHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH
Confidence            33445555555555555443211   111       23457778888887777665432211  1345555666666666


Q ss_pred             hcCCHHHHHHHHHhchhh------------c---------CCCCCHHhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 015765          158 LSKNYEEVKRIFTEFPKV------------Y---------GIEPNSETY-NKVIKSFCESGDSSSVYSILAEMRRKSIRP  215 (401)
Q Consensus       158 ~~~~~~~a~~~~~~~~~~------------~---------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  215 (401)
                      +..-+++|-++|+++..-            +         ..+..+.+. ......+...|+++.|...|-+..      
T Consensus       660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------  733 (1636)
T KOG3616|consen  660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------  733 (1636)
T ss_pred             hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------
Confidence            665666666666655310            0         000000000 011112222333333333332211      


Q ss_pred             CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015765          216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH  295 (401)
Q Consensus       216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  295 (401)
                         .....+.+......|.+|+.+++.+.+...  -..-|..+.+-|+..|+++.|.++|-+.-         .++-.|.
T Consensus       734 ---~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~  799 (1636)
T KOG3616|consen  734 ---CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAID  799 (1636)
T ss_pred             ---hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHH
Confidence               011234445566677777777777776542  23346677777888888888887775432         2344567


Q ss_pred             HHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 015765          296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAE  375 (401)
Q Consensus       296 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  375 (401)
                      .|.+.|+++.|.++-.+..  |.......|..-..-+-+.|++.+|.+++-..   | .|+.     -|..|-+.|..++
T Consensus       800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~dd  868 (1636)
T KOG3616|consen  800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDD  868 (1636)
T ss_pred             HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchH
Confidence            7788888888877765543  22334455655566667777777777776432   2 3432     3677888888888


Q ss_pred             HHHHHHHH
Q 015765          376 ANELIGLM  383 (401)
Q Consensus       376 a~~~~~~~  383 (401)
                      .+++.++-
T Consensus       869 mirlv~k~  876 (1636)
T KOG3616|consen  869 MIRLVEKH  876 (1636)
T ss_pred             HHHHHHHh
Confidence            87776653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.73  E-value=8e-07  Score=67.50  Aligned_cols=101  Identities=13%  Similarity=-0.043  Sum_probs=51.6

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015765          292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS  371 (401)
Q Consensus       292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  371 (401)
                      .+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++....+ +.+...+..+..++...|
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            33444455555555555555555432 2234445555555555555555555555555443 334455555555555555


Q ss_pred             CHHHHHHHHHHHHhcCCCCcccc
Q 015765          372 KVAEANELIGLMKKRFPKSGDMW  394 (401)
Q Consensus       372 ~~~~a~~~~~~~~~~~~~~~~~~  394 (401)
                      ++++|...|+...+..|.+...|
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHH
Confidence            55555555555555554444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.72  E-value=0.0001  Score=61.82  Aligned_cols=300  Identities=12%  Similarity=0.093  Sum_probs=212.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIV  119 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~  119 (401)
                      ....+-..+...++...|+..+..+..-  .|.+-.++..-...|...|+-..|+.=+..... .|++..   ....-..
T Consensus        40 khlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~---ARiQRg~  114 (504)
T KOG0624|consen   40 KHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA---ARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH---HHHHhch
Confidence            3344556667778888999998887543  333444555556788899999999998888773 333222   1122234


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCC--HH------------HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQS--VD------------ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY  185 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  185 (401)
                      .+.+.|.++.|..-|+..++......  ..            .....+..+...|+...|+.....+.+-.  +-|...+
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~  192 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLR  192 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHH
Confidence            57799999999999999988642111  11            12233455677899999999999997642  4567778


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh----HHHH---
Q 015765          186 NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV----YNIR---  258 (401)
Q Consensus       186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---  258 (401)
                      ..-..+|...|++..|+.-+....+.. ..+..++--+-..+...|+.+.++...++..+.  .|+...    |..+   
T Consensus       193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv  269 (504)
T KOG0624|consen  193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV  269 (504)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence            888899999999999998888776543 345666667778888999999999999888875  355422    2111   


Q ss_pred             ------HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHH
Q 015765          259 ------IQSLCKLKRSEEAKALLDGMLSRGIKPNL---DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMF  328 (401)
Q Consensus       259 ------l~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l  328 (401)
                            +......+++.++..-.+...+.......   ..+..+-.++...+++.+|++...+.++.  .|+ ..++.--
T Consensus       270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dR  347 (504)
T KOG0624|consen  270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDR  347 (504)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence                  12234457788888888887776433222   33455667778889999999999999875  454 7788888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHCC
Q 015765          329 TYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       329 i~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      ..+|.-...++.|+.-|+.+.+.+
T Consensus       348 AeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  348 AEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcC
Confidence            889998899999999988887654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=1.8e-06  Score=79.75  Aligned_cols=233  Identities=11%  Similarity=0.097  Sum_probs=161.6

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCC-------CCchhHHHHHHH
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDL-------RQNERFHVHSIV  119 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~li~  119 (401)
                      +.+...|+-+.|..-++.+.       +...|..+..+|.+..+++-|.-.+..|....+.       ..+...-.....
T Consensus       736 SfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv  808 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV  808 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH
Confidence            44455666666666555442       4458999999999999999998888777622110       000122233344


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      .....|.+++|+.+|.+-.+.         ..|-..|-..|.|++|.++-+.= ++.   -=..||......+-..+|.+
T Consensus       809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~-DRi---HLr~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK-DRI---HLRNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc-cce---ehhhhHHHHHHHHHhhccHH
Confidence            456789999999999998753         33445677889999999987654 321   12345666666677788899


Q ss_pred             HHHHHHHHH----------HhCC---------CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015765          200 SVYSILAEM----------RRKS---------IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ  260 (401)
Q Consensus       200 ~a~~~~~~~----------~~~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  260 (401)
                      .|++.|++.          ....         -..|...|......+-..|+++.|+.+|....+         |-.++.
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr  946 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR  946 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence            998888763          2111         123455666666777778888888888877655         556777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765          261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~  314 (401)
                      ..|-.|+.++|-++-++-   |   |......+.+.|...|++.+|..+|.+..
T Consensus       947 I~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  947 IKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             eEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            778889999988876543   2   66777888999999999999999998765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=4e-06  Score=74.55  Aligned_cols=255  Identities=12%  Similarity=0.086  Sum_probs=176.4

Q ss_pred             HHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 015765           83 SKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY  162 (401)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  162 (401)
                      ..+.+.|++.+|.-.|+......  |.+...|..|....+..++-..|+..+.+..+.. +.+..+...|.-.|...|.-
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence            44567888888888888877332  4557788888888888888888888888888876 55677788888888888888


Q ss_pred             HHHHHHHHhchhhc-----CCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHH-HhCCCCCCHHhHHHHHHHHHccCChH
Q 015765          163 EEVKRIFTEFPKVY-----GIE--PNSETYNKVIKSFCESGDSSSVYSILAEM-RRKSIRPNATDFGLLLAGFYKEHKYE  234 (401)
Q Consensus       163 ~~a~~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~  234 (401)
                      ..|.+.++......     -..  ++...-..  ..+.....+....++|-++ ...+..+|......|.-.|.-.|+++
T Consensus       370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            88888887764431     000  00000000  1222333445556666555 34444577777888888888889999


Q ss_pred             HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765          235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASM  313 (401)
Q Consensus       235 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m  313 (401)
                      +|...|+.+.... +.|...||.|...++...+.++|+..|.+..+.  +|+ +.....|.-+|...|.+++|.+.|-..
T Consensus       448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999888764 557788999999888888999999999988886  454 344445566677889999988887665


Q ss_pred             HhC---------CCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 015765          314 TNG---------GCEPDSYCFFMFTYFLCQGGEYETALKVC  345 (401)
Q Consensus       314 ~~~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~~  345 (401)
                      +..         +..++...|..|=.++.-.++.|.+.+..
T Consensus       525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            421         12234567777766677777777555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.70  E-value=1.3e-05  Score=77.33  Aligned_cols=151  Identities=10%  Similarity=0.048  Sum_probs=84.6

Q ss_pred             CccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 015765           72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNA  151 (401)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  151 (401)
                      +.+...+..++..+...+++++|.++.+......  |....+|..+...+.+.++.+++..+                 .
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~   88 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------N   88 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence            3455677788888878888888888887665332  22223444444466666664444443                 2


Q ss_pred             HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 015765          152 LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH  231 (401)
Q Consensus       152 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  231 (401)
                      ++.......++..+..+...+.+-   .-+..++..+..+|-+.|+.+++..+|+++.+.. +-|..+.+.+.-.|... 
T Consensus        89 ~l~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-  163 (906)
T PRK14720         89 LIDSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-  163 (906)
T ss_pred             hhhhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence            223333333443333333333221   2333456666666666677777777777666654 34556666666666666 


Q ss_pred             ChHHHHHHHHHHHHc
Q 015765          232 KYEDVGKVLQMMEKC  246 (401)
Q Consensus       232 ~~~~a~~~~~~~~~~  246 (401)
                      +.++|.+++.+....
T Consensus       164 dL~KA~~m~~KAV~~  178 (906)
T PRK14720        164 DKEKAITYLKKAIYR  178 (906)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            666666666655443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.68  E-value=7.6e-06  Score=65.84  Aligned_cols=156  Identities=9%  Similarity=0.039  Sum_probs=75.8

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015765           79 SIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL  158 (401)
Q Consensus        79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  158 (401)
                      ...-..+.-.|+-+....+.......  .+.+.......+....+.|++..|...|.+..... ++|..+|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence            33344444455555555544443311  12223344445555555555555555555555443 4555555555555555


Q ss_pred             cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHH
Q 015765          159 SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGK  238 (401)
Q Consensus       159 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  238 (401)
                      .|+.++|..-|.+..+-.  +-+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++.|..
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         147 LGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             ccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence            555555555555554332  2223334445555555555555555555554432 2244444445555555555555554


Q ss_pred             HH
Q 015765          239 VL  240 (401)
Q Consensus       239 ~~  240 (401)
                      +.
T Consensus       224 i~  225 (257)
T COG5010         224 IA  225 (257)
T ss_pred             hc
Confidence            44

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.7e-05  Score=68.87  Aligned_cols=303  Identities=13%  Similarity=0.103  Sum_probs=200.9

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS-VDALNALLLGCILSK  160 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  160 (401)
                      -.+....|+++.|+.+|.+....  .|+|...|..-..+|+..|++++|++--.+-.+.  .|+ ...|+-...++.-.|
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence            34567889999999999998733  2446788999999999999999999988877776  444 567888999999999


Q ss_pred             CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc---CC----------------------------------------
Q 015765          161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES---GD----------------------------------------  197 (401)
Q Consensus       161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----------------------------------------  197 (401)
                      ++++|+.-|.+-.+..  +.|...++-+..++...   ++                                        
T Consensus        85 ~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l  162 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL  162 (539)
T ss_pred             cHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence            9999999998877542  33333444444444111   00                                        


Q ss_pred             -----hhHHHHHHHHHHh--------CC-------CCC------------C----------HHhHHHHHHHHHccCChHH
Q 015765          198 -----SSSVYSILAEMRR--------KS-------IRP------------N----------ATDFGLLLAGFYKEHKYED  235 (401)
Q Consensus       198 -----~~~a~~~~~~~~~--------~~-------~~~------------~----------~~~~~~ll~~~~~~~~~~~  235 (401)
                           .+...+..-.+..        .|       ..|            |          ..-...+.++..+..+++.
T Consensus       163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~  242 (539)
T KOG0548|consen  163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET  242 (539)
T ss_pred             hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence                 0000000000000        00       001            0          0113345556666667777


Q ss_pred             HHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-------HHHHHHhcCCChHHHHH
Q 015765          236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK-------HLIHGFGKEGNLEGAKK  308 (401)
Q Consensus       236 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-------~li~~~~~~~~~~~a~~  308 (401)
                      +.+-+....+..  .+..-++....+|...|.+.++...-+...+.|-. ...-|+       .+..+|.+.++++.|..
T Consensus       243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~  319 (539)
T KOG0548|consen  243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK  319 (539)
T ss_pred             HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence            777777776654  45556677777888888888877777666655422 122222       23346667788889999


Q ss_pred             HHHHHHhCCCCCCHhhH-------------------------HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015765          309 LFASMTNGGCEPDSYCF-------------------------FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL  363 (401)
Q Consensus       309 ~~~~m~~~~~~~~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  363 (401)
                      .|.+.+.....|+...=                         ..-...+.+.|++..|++.+.++++.. +-|...|..-
T Consensus       320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR  398 (539)
T KOG0548|consen  320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR  398 (539)
T ss_pred             HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence            88887655434433111                         112345678899999999999999887 6688889999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCcccc
Q 015765          364 VTGLASISKVAEANELIGLMKKRFPKSGDMW  394 (401)
Q Consensus       364 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  394 (401)
                      .-+|.+.|.+..|++=.+...+..|+....|
T Consensus       399 Aac~~kL~~~~~aL~Da~~~ieL~p~~~kgy  429 (539)
T KOG0548|consen  399 AACYLKLGEYPEALKDAKKCIELDPNFIKAY  429 (539)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence            9999999999999988888877766654443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.65  E-value=1.4e-05  Score=64.29  Aligned_cols=119  Identities=11%  Similarity=0.154  Sum_probs=70.8

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH-HhcCC--HHHH
Q 015765          195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL-CKLKR--SEEA  271 (401)
Q Consensus       195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a  271 (401)
                      .++.+++...++...... +.|...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            445555555555555442 4456666666666666666666666666666653 33455555555543 45455  3666


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                      ..++++..+.+.. +...+..+...+.+.|++++|...|+++.+.
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666666665432 4556666666666666666666666666654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.62  E-value=1.1e-05  Score=74.02  Aligned_cols=188  Identities=16%  Similarity=0.172  Sum_probs=83.3

Q ss_pred             HhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 015765          157 ILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV  236 (401)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  236 (401)
                      ....+|.+|+.+++.+.++   +.-..-|..+...|...|+++.|.++|-+.         ..++-.|..|.+.|+|+.|
T Consensus       743 i~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence            3444555555555555322   222223444555555555555555555432         1233344555555555555


Q ss_pred             HHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                      .++-.+...  .......|-+-..-+-+.|++.+|.+++-.+.    .|+.     .|..|-+.|..+..+++..+-...
T Consensus       811 ~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d  879 (1636)
T KOG3616|consen  811 FKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD  879 (1636)
T ss_pred             HHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence            554443321  22233333333344444455544444443221    1221     234444444444444444332211


Q ss_pred             CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 015765          317 GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANEL  379 (401)
Q Consensus       317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  379 (401)
                         .-..|-..+..-|...|+.+.|..-|-+.-         -|.+-++.|...+-|++|.++
T Consensus       880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri  930 (1636)
T KOG3616|consen  880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI  930 (1636)
T ss_pred             ---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence               112344445555666666666666553322         233344455555555555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.62  E-value=0.00023  Score=62.62  Aligned_cols=147  Identities=16%  Similarity=0.152  Sum_probs=101.8

Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHH
Q 015765          227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEG  305 (401)
Q Consensus       227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~  305 (401)
                      +...|++++|+..++.+... .+.|........+.+.+.++.++|.+.++.+...  .|+ ....-.+..+|.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            44667777888887777665 2445555666677777788888888888877776  444 4555566777777888888


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       306 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      |..+++...... +-|+..|..|..+|...|+..++..-..                  +.|...|++++|+..+....+
T Consensus       393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence            888877777653 5566778888888887777766655433                  445566777777777777777


Q ss_pred             cCCCCcccch
Q 015765          386 RFPKSGDMWN  395 (401)
Q Consensus       386 ~~~~~~~~~~  395 (401)
                      ....+...|-
T Consensus       454 ~~~~~~~~~a  463 (484)
T COG4783         454 QVKLGFPDWA  463 (484)
T ss_pred             hccCCcHHHH
Confidence            7666665553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.62  E-value=3e-05  Score=74.79  Aligned_cols=222  Identities=14%  Similarity=0.067  Sum_probs=124.2

Q ss_pred             chhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CC----------
Q 015765           37 TIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT-RP----------  105 (401)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------  105 (401)
                      .....+..++..+...+++++|.++++......+-.+....+..  ..+...++.+++..+  .+.. .+          
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G--~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISG--ILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHH--HHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            45567888999999999999999999977655433333333333  366666666665554  2221 00          


Q ss_pred             ------CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCC
Q 015765          106 ------DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIE  179 (401)
Q Consensus       106 ------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  179 (401)
                            ..+.+...+..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|... +.++|++++.+....    
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----  178 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----  178 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence                  111122345555666666677777777777776666 45666666666666666 677777666666432    


Q ss_pred             CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCchhHHHH
Q 015765          180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASGVNVYNIR  258 (401)
Q Consensus       180 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l  258 (401)
                                  +...+++..+.++|.++.... +                .+.+.-.++.+.+... |..--..++--+
T Consensus       179 ------------~i~~kq~~~~~e~W~k~~~~~-~----------------~d~d~f~~i~~ki~~~~~~~~~~~~~~~l  229 (906)
T PRK14720        179 ------------FIKKKQYVGIEEIWSKLVHYN-S----------------DDFDFFLRIERKVLGHREFTRLVGLLEDL  229 (906)
T ss_pred             ------------HHhhhcchHHHHHHHHHHhcC-c----------------ccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence                        334445555555555554431 1                1122222222222221 222223344445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015765          259 IQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG  298 (401)
Q Consensus       259 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  298 (401)
                      -..|-..++++++..+++.+.+...+ |.....-++.+|.
T Consensus       230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            55566666677777777776665433 4455555555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.59  E-value=2.6e-05  Score=62.81  Aligned_cols=28  Identities=11%  Similarity=0.241  Sum_probs=10.5

Q ss_pred             CHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          216 NATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      |...|+.+.-+|-+.|+.+.|..-|.+.
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qA  160 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQA  160 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence            3333333333333333333333333333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=0.00017  Score=68.82  Aligned_cols=258  Identities=17%  Similarity=0.188  Sum_probs=177.8

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCC-CCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPD-LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL  152 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  152 (401)
                      |+..-.....++...+-..+.+++++++.-.+. +..+...-+.++-... .-+...+.+..+++-..+ .|+      +
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------H
Confidence            555666777888888888888888888884433 3333444444444333 346677777777776554 233      2


Q ss_pred             HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 015765          153 LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK  232 (401)
Q Consensus       153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  232 (401)
                      ...+...+-+++|..+|++.      ..+..+.+.|+.   .-+..+.|.++-++..      ....|+.+..+-.+.|.
T Consensus      1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence            34556677889999999877      346666666665   3456777777766532      45789999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015765          233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS  312 (401)
Q Consensus       233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  312 (401)
                      ..+|++-|-+.      .|...|.-+++...+.|.+++-.+++....++.-.|...  +.||-+|++.++..+.++++  
T Consensus      1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred             hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence            99888766432      356679999999999999999999998887776555544  56888999999888776654  


Q ss_pred             HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 015765          313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE  378 (401)
Q Consensus       313 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  378 (401)
                           ..||......+.+-|...|.++.|.-++..         +..|..|...+...|++..|..
T Consensus      1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred             -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence                 247777777777777777777777766653         2234444444555555544443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=4.6e-05  Score=61.04  Aligned_cols=190  Identities=15%  Similarity=0.168  Sum_probs=136.4

Q ss_pred             hcCCHHHHHHHHHhchhhc--C-CCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765          158 LSKNYEEVKRIFTEFPKVY--G-IEPNSE-TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY  233 (401)
Q Consensus       158 ~~~~~~~a~~~~~~~~~~~--~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  233 (401)
                      ...+.++..+++.++....  | ..++.. .|..++-+....|+.+-|...++.+..+ ++-+..+-..-.-.+-..|.+
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence            3457888888888875432  2 344543 3455666677788999999999998776 333333333333345567889


Q ss_pred             HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765          234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM  313 (401)
Q Consensus       234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m  313 (401)
                      ++|+++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99999999998876 556777777777777778888888888887776 4558899999999999999999999999998


Q ss_pred             HhCCCCC-CHhhHHHHHHHHHccC---CHHHHHHHHHHHHHCC
Q 015765          314 TNGGCEP-DSYCFFMFTYFLCQGG---EYETALKVCRASMAKG  352 (401)
Q Consensus       314 ~~~~~~~-~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~  352 (401)
                      +-.  .| ++..+..+...+.-.|   +.+.+.+++.+..+..
T Consensus       181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            864  44 4455556666554433   5667888888887653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.56  E-value=3.5e-05  Score=67.55  Aligned_cols=116  Identities=10%  Similarity=0.034  Sum_probs=64.0

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHH
Q 015765          123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSV  201 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a  201 (401)
                      ..|+++.|++.++.+...- +.|...+......+.+.++.++|.+.++++...   .|+ ....-.+..++.+.|++++|
T Consensus       318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHH
Confidence            4556666666666655442 334444444455566666666666666666543   344 33344455556666666666


Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      ..+++..... .+-|...|..|..+|...|+..++..-..+.
T Consensus       394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            6666665544 2445556666666666666665555544443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.56  E-value=3e-05  Score=73.89  Aligned_cols=147  Identities=11%  Similarity=0.054  Sum_probs=107.1

Q ss_pred             CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 015765          213 IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKH  292 (401)
Q Consensus       213 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  292 (401)
                      ...+...+..|.....+.|.+++|+.+++...+.. +.+......+...+.+.+++++|...+++....... +......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence            45567778888888888888888888888887763 334566677777888888888888888888777432 4566677


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015765          293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL  363 (401)
Q Consensus       293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  363 (401)
                      +..++.+.|++++|..+|+++...+ .-+...+..+..++...|+.++|...|++..+.. .+...-|+.+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR  228 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence            7777888888888888888888732 2346777788888888888888888888877753 3444444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.55  E-value=1.8e-05  Score=75.43  Aligned_cols=177  Identities=10%  Similarity=0.006  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHHhcCCChhHHHH---HhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHH
Q 015765           39 KEKKRATIARLKSESNPFRILD---ICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHV  115 (401)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  115 (401)
                      ++...++-+.+.+.+....+.+   -.....++  ++.+...+-.+.....+.|.+++|..+++.+...  .|.+.....
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~  124 (694)
T PRK15179         49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFI  124 (694)
T ss_pred             HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHH
Confidence            3455566666666664443332   22222232  6667889999999999999999999999999843  355577888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      .+...+.+.+++++|+..+++..+.. +-+....+.+..++.+.|++++|..+|+++...  .+-+..++..+...+-..
T Consensus       125 ~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        125 LMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRR  201 (694)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHc
Confidence            89999999999999999999999886 557778888889999999999999999999763  134477889999999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLL  223 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l  223 (401)
                      |+.++|...|++..+. ..+....|+..
T Consensus       202 G~~~~A~~~~~~a~~~-~~~~~~~~~~~  228 (694)
T PRK15179        202 GALWRARDVLQAGLDA-IGDGARKLTRR  228 (694)
T ss_pred             CCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence            9999999999998765 23344444433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.55  E-value=0.00071  Score=63.89  Aligned_cols=228  Identities=16%  Similarity=0.169  Sum_probs=140.0

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHH--HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSK--LSQANHFNAISQLLEELKTRPDLRQNERFHVHSI  118 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  118 (401)
                      .++++...+.+ ++++.|+........+.+..    .|..++.+  ..+.|+.++|..+++.....+  ++|..+...+-
T Consensus        12 r~rpi~d~ld~-~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~   84 (932)
T KOG2053|consen   12 RLRPIYDLLDS-SQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQ   84 (932)
T ss_pred             HHhHHHHHhhh-HHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHH
Confidence            44555555544 45788888877776553322    24444444  357788888888888776333  33677888888


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015765          119 VLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE----VKRIFTEFPKVYGIEPNSETYNKVIKSFCE  194 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  194 (401)
                      ..|.+.|+.++|..+|++....  -|+......+..+|++.+++.+    |.++++..      +-+...|=.+++.+.+
T Consensus        85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilq  156 (932)
T KOG2053|consen   85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQ  156 (932)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHH
Confidence            8888888888888888888765  4667777777778888777654    44444433      3344444455555443


Q ss_pred             cC-Ch---------hHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHHHHHH-HHHHcCCCCCchhHHHHHHHH
Q 015765          195 SG-DS---------SSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVGKVLQ-MMEKCGIASGVNVYNIRIQSL  262 (401)
Q Consensus       195 ~~-~~---------~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~  262 (401)
                      .- ..         .-|.+.++.+.+.+ .--+..-.......+-..|++++|..++. ...+.-..-+...-+.-+..+
T Consensus       157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll  236 (932)
T KOG2053|consen  157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL  236 (932)
T ss_pred             hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            21 11         23555556655443 22222233334445556777888888873 333332233344445667777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCC
Q 015765          263 CKLKRSEEAKALLDGMLSRGI  283 (401)
Q Consensus       263 ~~~~~~~~a~~~~~~~~~~~~  283 (401)
                      ...+++.+..++-.++..+|.
T Consensus       237 k~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  237 KLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHhcChHHHHHHHHHHHHhCC
Confidence            778888888888888887753

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=0.00022  Score=57.26  Aligned_cols=163  Identities=11%  Similarity=0.034  Sum_probs=76.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      +..++.+....|+.+.|...++++.+.- +.+..+-..-.-.+-..|++++|+++|+.+.+..  +.|..++---+...-
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHH
Confidence            3444444445555566665555554432 2222222111112233455566666666555432  334444444444444


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC---CHHH
Q 015765          194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK---RSEE  270 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~  270 (401)
                      ..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.++++.-.. |.+...+..+...+.-.|   +.+.
T Consensus       132 a~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~  209 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLEL  209 (289)
T ss_pred             HcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHH
Confidence            445555555555555444 44455566666666666666666655555555432 222223333333332222   3444


Q ss_pred             HHHHHHHHHHC
Q 015765          271 AKALLDGMLSR  281 (401)
Q Consensus       271 a~~~~~~~~~~  281 (401)
                      +.++|.+..+.
T Consensus       210 arkyy~~alkl  220 (289)
T KOG3060|consen  210 ARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHh
Confidence            55555555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.47  E-value=7.4e-06  Score=61.75  Aligned_cols=98  Identities=15%  Similarity=0.086  Sum_probs=46.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015765          291 KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI  370 (401)
Q Consensus       291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  370 (401)
                      ..+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+...|...
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence            333444444555555555555544432 2233444444445555555555555555444432 33344444444555555


Q ss_pred             CCHHHHHHHHHHHHhcCCCC
Q 015765          371 SKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       371 g~~~~a~~~~~~~~~~~~~~  390 (401)
                      |++++|.+.++...+..|.+
T Consensus        99 g~~~~A~~~~~~al~~~p~~  118 (135)
T TIGR02552        99 GEPESALKALDLAIEICGEN  118 (135)
T ss_pred             CCHHHHHHHHHHHHHhcccc
Confidence            55555555555555544433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.43  E-value=2.2e-05  Score=59.83  Aligned_cols=128  Identities=13%  Similarity=0.050  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHH
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNAL  152 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l  152 (401)
                      ..|..++..+ ..++...+...++.+... ++.+-.......+...+...|++++|...|+...+....+.  ......+
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            3455555555 367777777777776632 22212123333344566677777777777777776542222  1233345


Q ss_pred             HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 015765          153 LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE  207 (401)
Q Consensus       153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  207 (401)
                      ...+...|++++|+..++.....   ......+......|.+.|++++|...|+.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            56667777777777777665321   33444556666777777777777777765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.39  E-value=0.00011  Score=69.94  Aligned_cols=88  Identities=9%  Similarity=-0.060  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          304 EGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM  383 (401)
Q Consensus       304 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  383 (401)
                      ..|...+...++.. ..+..+|+.|.-. ...|++.-|...|-+-.... +....+|..+.-.+.+..+++.|...|...
T Consensus       800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~  876 (1238)
T KOG1127|consen  800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV  876 (1238)
T ss_pred             HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence            35666666665542 3344555555443 55566666666665544443 445667777777788888888888888888


Q ss_pred             HhcCCCCcccc
Q 015765          384 KKRFPKSGDMW  394 (401)
Q Consensus       384 ~~~~~~~~~~~  394 (401)
                      +...|.|...|
T Consensus       877 qSLdP~nl~~W  887 (1238)
T KOG1127|consen  877 QSLDPLNLVQW  887 (1238)
T ss_pred             hhcCchhhHHH
Confidence            88788777666

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.39  E-value=0.00018  Score=68.55  Aligned_cols=183  Identities=12%  Similarity=0.013  Sum_probs=123.6

Q ss_pred             chHHHHHHHH-hhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015765           91 FNAISQLLEE-LKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIF  169 (401)
Q Consensus        91 ~~~a~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  169 (401)
                      ...|...|=+ ++..+...   ..|..|...|+...+...|.+.|+...+.+ ..+...+....+.|++..+++.|..+.
T Consensus       474 ~~~al~ali~alrld~~~a---paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLA---PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             HHHHHHHHHHHHhcccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence            4444444433 33333333   378888888888888889999999988876 557788888899999999999998884


Q ss_pred             HhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 015765          170 TEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA  249 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  249 (401)
                      -...+......-...|....-.|.+.++...|..-|+...... +.|...|..++.+|...|++..|.++|.+....+  
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--  626 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--  626 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence            4432211111111223333444667788888888888877653 4477788899999999999999999998887753  


Q ss_pred             CC-chhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765          250 SG-VNVYNIRIQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       250 ~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  280 (401)
                      |+ ...---..-.-+..|.+.++...+..+..
T Consensus       627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            32 22222223344567888888888877654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.38  E-value=2.6e-05  Score=59.21  Aligned_cols=90  Identities=12%  Similarity=-0.023  Sum_probs=42.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      ...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+..  +.+...+..+..++.+.|+
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCC
Confidence            334444455555555555544443 3344444444445555555555555555544321  2333444444444555555


Q ss_pred             hhHHHHHHHHHHh
Q 015765          198 SSSVYSILAEMRR  210 (401)
Q Consensus       198 ~~~a~~~~~~~~~  210 (401)
                      +++|.+.|+...+
T Consensus       108 ~~eAi~~~~~Al~  120 (144)
T PRK15359        108 PGLAREAFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.36  E-value=0.0014  Score=58.53  Aligned_cols=136  Identities=13%  Similarity=0.088  Sum_probs=92.6

Q ss_pred             CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015765           71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN  150 (401)
Q Consensus        71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  150 (401)
                      .|-|..+|..+|.-+... .++++.+.++++.  +.+|.....|..-|..-....+++.++++|.+-+..  ..+...|.
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~   90 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLV--NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK   90 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence            455899999999988766 9999999999998  345555678888899999999999999999988765  34566676


Q ss_pred             HHHHHHHh-cCCH----HHHHHHHHhchhhcCCCCCH-HhHHHHHHH---------HHhcCChhHHHHHHHHHHhC
Q 015765          151 ALLLGCIL-SKNY----EEVKRIFTEFPKVYGIEPNS-ETYNKVIKS---------FCESGDSSSVYSILAEMRRK  211 (401)
Q Consensus       151 ~l~~~~~~-~~~~----~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~  211 (401)
                      ..+.--.+ .|+.    +...+.|+-..+..|+.+-. ..|+..+..         +....+++...++|+++...
T Consensus        91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t  166 (656)
T KOG1914|consen   91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT  166 (656)
T ss_pred             HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence            66653332 2222    33444455555555543322 234444433         33444667778888887654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.34  E-value=2.6e-05  Score=68.76  Aligned_cols=122  Identities=19%  Similarity=0.189  Sum_probs=73.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 015765          257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG  336 (401)
Q Consensus       257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  336 (401)
                      .++..+...++++.|..+|+++.+..  |+  ....+++.+...++-.+|.+++++.++.. +-+......-...|.+.+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            34445555566666777777666652  33  23335555555666666666666666442 234455555556666777


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          337 EYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      +++.|.++.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus       249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            7777777777766553 3344567777777777777777776666554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.33  E-value=3.5e-05  Score=58.05  Aligned_cols=92  Identities=16%  Similarity=0.176  Sum_probs=40.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      .+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...+++..+..  +.+...+..+...+...
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLLAL   98 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHc
Confidence            33344444444444444444444433 2344444444444444444444444444443221  22333344444444444


Q ss_pred             CChhHHHHHHHHHHh
Q 015765          196 GDSSSVYSILAEMRR  210 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~  210 (401)
                      |++++|...|+...+
T Consensus        99 g~~~~A~~~~~~al~  113 (135)
T TIGR02552        99 GEPESALKALDLAIE  113 (135)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            444444444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=0.00015  Score=67.56  Aligned_cols=240  Identities=11%  Similarity=0.087  Sum_probs=155.1

Q ss_pred             cHhHHHHHHH--HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCC---------C
Q 015765           74 DRMAFSIAVS--KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYG---------L  142 (401)
Q Consensus        74 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~  142 (401)
                      |..+-.++++  .|...|+.+.|.+-.+-++.       ..+|..+...|.+..+.|-|.--+..|....         -
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q  797 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ  797 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence            4455555553  45667999999888777652       3578999999999998888876666654310         0


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 015765          143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL  222 (401)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (401)
                      .++ .+-....-.....|.+++|+.+|.+.. +         |..|=+.|-..|.|++|+++-+.-....+   ..||..
T Consensus       798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ck-R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~  863 (1416)
T KOG3617|consen  798 NGE-EDEAKVAVLAIELGMLEEALILYRQCK-R---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN  863 (1416)
T ss_pred             CCc-chhhHHHHHHHHHhhHHHHHHHHHHHH-H---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence            121 222223334567899999999999984 3         45566677788999999998765322222   345555


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcC-------------------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 015765          223 LLAGFYKEHKYEDVGKVLQMMEKCG-------------------IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI  283 (401)
Q Consensus       223 ll~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  283 (401)
                      ....+-..+|.+.|++.|++.....                   -..|...|.-....+...|+.+.|+.+|....+   
T Consensus       864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---  940 (1416)
T KOG3617|consen  864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---  940 (1416)
T ss_pred             HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence            6666666777887777766531110                   122334444445555566777777777765543   


Q ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          284 KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       284 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  349 (401)
                            |..+++..|-.|+.++|-++-++      .-|....-.+.+.|...|++.+|..+|.++.
T Consensus       941 ------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                  45566777777888888777654      2344555667788888888888888887654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.26  E-value=3.6e-05  Score=56.40  Aligned_cols=106  Identities=19%  Similarity=0.164  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHH
Q 015765          289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD----SYCFFMFTYFLCQGGEYETALKVCRASMAKGW--VPHFSTMKS  362 (401)
Q Consensus       289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~  362 (401)
                      ++..+...+.+.|++++|.+.+..+.+..  |+    ...+..+..++.+.|++++|...++.+.....  +.....+..
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            44555666667777777777777776542  22    23555677777777888888888877766421  112455666


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          363 LVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      +..++.+.|++++|.+.++++.+.+|.+.....+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            7777777788888888888887777776655443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.25  E-value=2.2e-06  Score=47.24  Aligned_cols=32  Identities=53%  Similarity=0.856  Sum_probs=14.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN  286 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  286 (401)
                      ||++|.+|++.|++++|.++|++|.+.|++||
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            44444444444444444444444444444443

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.24  E-value=2.1e-06  Score=47.34  Aligned_cols=33  Identities=48%  Similarity=0.779  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC
Q 015765          289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD  321 (401)
Q Consensus       289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  321 (401)
                      +|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566777777777777777777777777666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.24  E-value=8.4e-05  Score=56.64  Aligned_cols=126  Identities=15%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC--HhhHHHHHH
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKP--NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD--SYCFFMFTY  330 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~  330 (401)
                      |..++..+ ..++...+...++.+......-  .....-.+...+...|++++|...|+........|+  ......+..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            44444444 3566666666666666652211  012223344556667777777777777776542222  123344556


Q ss_pred             HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM  383 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  383 (401)
                      .+...|++++|...++.....  ......+....++|.+.|++++|...|+..
T Consensus        94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            666777777777777553322  234445566667777777777777776653

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.22  E-value=2.8e-06  Score=46.49  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=13.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 015765          254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIK  284 (401)
Q Consensus       254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  284 (401)
                      +|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~   33 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK   33 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3444444444444444444444444444443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.22  E-value=5.9e-05  Score=66.57  Aligned_cols=124  Identities=13%  Similarity=0.061  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF  192 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  192 (401)
                      ....++..+...++++.|..+|+++.+..  |+  ....++..+...++-.+|.+++.+..+..  +.+......-...+
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            34444555555666666666666666542  33  23335555555566666666666665432  33444444555555


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      .+.++++.|+++.+++... .+-+..+|..|..+|.+.|+++.|+..++.+
T Consensus       245 l~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            6666666666666666554 1223446666666666666666666655544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.22  E-value=0.0013  Score=62.10  Aligned_cols=224  Identities=10%  Similarity=0.095  Sum_probs=150.6

Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCCh
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG--CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS  198 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  198 (401)
                      ....+++..|++...++.+.  .|+.. |..++.+  ..+.|..++|..+++..... + ..|..|...+-.+|.+.++.
T Consensus        19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~-~~D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGL-K-GTDDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccC-C-CCchHHHHHHHHHHHHHhhh
Confidence            44678999999999988775  45544 3333443  45789999999888887432 2 23788899999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC----------CH
Q 015765          199 SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK----------RS  268 (401)
Q Consensus       199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~  268 (401)
                      ++|..+|++....  -|+......+..+|.+.+.+.+-.++--++-+. .+.....+-.+++.+.+.-          -.
T Consensus        94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l  170 (932)
T KOG2053|consen   94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILL  170 (932)
T ss_pred             hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhH
Confidence            9999999998765  566777777888888888877655554444443 3445555555665555431          12


Q ss_pred             HHHHHHHHHHHHCC-CCcCHHHHHHHHHHHhcCCChHHHHHHHH-HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 015765          269 EEAKALLDGMLSRG-IKPNLDTYKHLIHGFGKEGNLEGAKKLFA-SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR  346 (401)
Q Consensus       269 ~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  346 (401)
                      .-|.+.++.+.+.+ .--+..-...-...+...|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++..
T Consensus       171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~  250 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS  250 (932)
T ss_pred             HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence            34666777776654 11122222222334456788999999884 34443333344455667778888899999999998


Q ss_pred             HHHHCC
Q 015765          347 ASMAKG  352 (401)
Q Consensus       347 ~~~~~~  352 (401)
                      ++...|
T Consensus       251 ~Ll~k~  256 (932)
T KOG2053|consen  251 RLLEKG  256 (932)
T ss_pred             HHHHhC
Confidence            888886

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.20  E-value=5.1e-05  Score=67.32  Aligned_cols=133  Identities=14%  Similarity=0.105  Sum_probs=106.4

Q ss_pred             HHHhchhhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          168 IFTEFPKVY--GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS--IRPNATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       168 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      ++..|.+.+  +.+.+.....++++.+....+++.+..++.+.+...  ...-..|.+++++.|.+.|..+.+..+++.=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            445543332  335566778888888888888999999999887652  2233456679999999999999999999999


Q ss_pred             HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcC
Q 015765          244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE  300 (401)
Q Consensus       244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  300 (401)
                      ...|+-||..++|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus       130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998887777777777767666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.19  E-value=3.3e-06  Score=46.19  Aligned_cols=33  Identities=33%  Similarity=0.643  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP  320 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  320 (401)
                      .+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666655

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.14  E-value=4.4e-05  Score=67.69  Aligned_cols=124  Identities=17%  Similarity=0.154  Sum_probs=91.7

Q ss_pred             CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 015765          212 SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT  289 (401)
Q Consensus       212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  289 (401)
                      +.+.+......+++.+....+.+.+..++-+....  ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            44567777777888887777888888877777654  2222234556888888888888888888888778888888888


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 015765          290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG  335 (401)
Q Consensus       290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  335 (401)
                      +|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888888888877776666666666666665554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.13  E-value=4.7e-05  Score=53.00  Aligned_cols=74  Identities=14%  Similarity=0.263  Sum_probs=41.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765          260 QSLCKLKRSEEAKALLDGMLSRGI-KPNLDTYKHLIHGFGKEG--------NLEGAKKLFASMTNGGCEPDSYCFFMFTY  330 (401)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~li~  330 (401)
                      ..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+..        ++...+.+|++|+..+++|+..+|+.++.
T Consensus        33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~  112 (120)
T PF08579_consen   33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG  112 (120)
T ss_pred             HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence            333344555555555555555555 555555555555544321        23345566666666666666666666666


Q ss_pred             HHH
Q 015765          331 FLC  333 (401)
Q Consensus       331 ~~~  333 (401)
                      .+.
T Consensus       113 ~Ll  115 (120)
T PF08579_consen  113 SLL  115 (120)
T ss_pred             HHH
Confidence            554

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.10  E-value=7.1e-05  Score=51.99  Aligned_cols=93  Identities=15%  Similarity=0.129  Sum_probs=50.4

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015765          292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS  371 (401)
Q Consensus       292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  371 (401)
                      .+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence            34444555556666666665555432 1222444555555555666666666666555543 223345555556666666


Q ss_pred             CHHHHHHHHHHHHhc
Q 015765          372 KVAEANELIGLMKKR  386 (401)
Q Consensus       372 ~~~~a~~~~~~~~~~  386 (401)
                      ++++|...++...+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            666666666665544

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.09  E-value=5.8e-05  Score=52.55  Aligned_cols=75  Identities=21%  Similarity=0.434  Sum_probs=42.4

Q ss_pred             HHHHHccCChHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015765          224 LAGFYKEHKYEDVGKVLQMMEKCGI-ASGVNVYNIRIQSLCKLK--------RSEEAKALLDGMLSRGIKPNLDTYKHLI  294 (401)
Q Consensus       224 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~li  294 (401)
                      |..+...+++.....+|+.+...|+ .|+..+|+.++.+.++..        +.-..+.+|+.|...+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3334444555555555555555555 555555555555554432        2334566666777667777777777776


Q ss_pred             HHHh
Q 015765          295 HGFG  298 (401)
Q Consensus       295 ~~~~  298 (401)
                      ..+.
T Consensus       112 ~~Ll  115 (120)
T PF08579_consen  112 GSLL  115 (120)
T ss_pred             HHHH
Confidence            6654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.06  E-value=0.00022  Score=52.12  Aligned_cols=95  Identities=16%  Similarity=0.052  Sum_probs=39.1

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHH
Q 015765           79 SIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR--QSVDALNALLLG  155 (401)
Q Consensus        79 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~  155 (401)
                      ......+.+.|++++|.+.|+.+.. .++.+.....+..+..++.+.|+++.|.+.|+.+......  .....+..+..+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            3334444444555555555544442 1111111223333444444445555555555444432100  012333344444


Q ss_pred             HHhcCCHHHHHHHHHhch
Q 015765          156 CILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~  173 (401)
                      +.+.|+.++|...++++.
T Consensus        86 ~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHhCChHHHHHHHHHHH
Confidence            444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.98  E-value=0.0002  Score=61.07  Aligned_cols=129  Identities=16%  Similarity=0.147  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK-LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF  297 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  297 (401)
                      +|..+|+..-+.+..+.|..+|.+..+.+ ..+..+|-.....-.. .++.+.|.++|+...+. +..+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34445555555555555555555554322 1122233322222112 23444455555554443 222444444444555


Q ss_pred             hcCCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          298 GKEGNLEGAKKLFASMTNGGCEPD---SYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       298 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      ...|+.+.|..+|++.... +.++   ...|...+..=.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555433 1111   12444444444444555555555444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.96  E-value=0.00018  Score=49.90  Aligned_cols=91  Identities=15%  Similarity=0.164  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      .+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+..  +.+..++..+...+...
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence            33444444555555555555554432 2223444444445555555555555555543321  22223444444455555


Q ss_pred             CChhHHHHHHHHHH
Q 015765          196 GDSSSVYSILAEMR  209 (401)
Q Consensus       196 ~~~~~a~~~~~~~~  209 (401)
                      |+++.|...+....
T Consensus        82 ~~~~~a~~~~~~~~   95 (100)
T cd00189          82 GKYEEALEAYEKAL   95 (100)
T ss_pred             HhHHHHHHHHHHHH
Confidence            55555555554443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.96  E-value=0.0017  Score=55.64  Aligned_cols=26  Identities=12%  Similarity=0.192  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhh
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELK  102 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~  102 (401)
                      .|......|...|++++|.+.|.+..
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa   62 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAA   62 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHH
Confidence            45555556666666666666665554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.94  E-value=1.1e-05  Score=42.89  Aligned_cols=25  Identities=40%  Similarity=0.713  Sum_probs=9.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHH
Q 015765          290 YKHLIHGFGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       290 ~~~li~~~~~~~~~~~a~~~~~~m~  314 (401)
                      |+.++++|++.|++++|.++|++|.
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            3333333333333333333333333

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.91  E-value=1.8e-05  Score=42.09  Aligned_cols=29  Identities=41%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015765          254 VYNIRIQSLCKLKRSEEAKALLDGMLSRG  282 (401)
Q Consensus       254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  282 (401)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56666666666666666666666666654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.91  E-value=0.00026  Score=62.67  Aligned_cols=103  Identities=15%  Similarity=0.030  Sum_probs=81.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE  337 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  337 (401)
                      -...+...|++++|+..|++..+.... +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            345566789999999999999887533 67788888889999999999999999998864 3356778888899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015765          338 YETALKVCRASMAKGWVPHFSTMKSLV  364 (401)
Q Consensus       338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~  364 (401)
                      +++|...|++.++.+  |+...+...+
T Consensus        86 ~~eA~~~~~~al~l~--P~~~~~~~~l  110 (356)
T PLN03088         86 YQTAKAALEKGASLA--PGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            999999999988764  4444433333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.90  E-value=0.0037  Score=52.03  Aligned_cols=180  Identities=12%  Similarity=0.074  Sum_probs=91.5

Q ss_pred             HHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015765           80 IAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL  158 (401)
Q Consensus        80 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  158 (401)
                      .....+...|++++|++.|+.+.. .|..+.-....-.++.+|.+.++++.|...+++..+.........+...+.+.+.
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            344455667788888888887773 2222221222244556677778888888888777765322222222222322221


Q ss_pred             --c---------------CC---HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 015765          159 --S---------------KN---YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT  218 (401)
Q Consensus       159 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  218 (401)
                        .               .|   ..+|+..|+++++.   -|+.             .-..+|...+..+...    =..
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~----la~  176 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDR----LAK  176 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHH----HHH
Confidence              1               11   23444555555544   2332             1223333333222211    000


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIASGVNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      .--.+...|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|..+...+.
T Consensus       177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            1113455567777777777777777664  112223445566677777777777777665543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.88  E-value=0.0004  Score=54.79  Aligned_cols=86  Identities=23%  Similarity=0.357  Sum_probs=46.2

Q ss_pred             CHHhHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc----------------CCHHHHHHH
Q 015765          216 NATDFGLLLAGFYK-----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL----------------KRSEEAKAL  274 (401)
Q Consensus       216 ~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~~~~a~~~  274 (401)
                      +..+|..+++.|.+     .|..+-....++.|.+.|+..|..+|+.|++.+=+.                .+-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            44555555555442     244555555556666666666666666666554331                123345556


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765          275 LDGMLSRGIKPNLDTYKHLIHGFGKEG  301 (401)
Q Consensus       275 ~~~~~~~~~~p~~~~~~~li~~~~~~~  301 (401)
                      +++|+..|+-||..++..+++.+.+.+
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            666666666666666666666554443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.87  E-value=0.00098  Score=52.48  Aligned_cols=92  Identities=11%  Similarity=0.087  Sum_probs=62.7

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL  152 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  152 (401)
                      ....+..+...+...|++++|...|++.... ++.+.....+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            4556777777788888888888888887733 2222123567777788888888888888888887754 3355666666


Q ss_pred             HHHHHhcCCHHHHH
Q 015765          153 LLGCILSKNYEEVK  166 (401)
Q Consensus       153 ~~~~~~~~~~~~a~  166 (401)
                      ...+...|+...+.
T Consensus       113 g~~~~~~g~~~~a~  126 (172)
T PRK02603        113 AVIYHKRGEKAEEA  126 (172)
T ss_pred             HHHHHHcCChHhHh
Confidence            66776666644433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.85  E-value=3.3e-05  Score=52.55  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=41.8

Q ss_pred             cCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015765          124 ANMIDHAMQTFEEMDKYGLR-QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY  202 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  202 (401)
                      .|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+..  +.+....-.+..++.+.|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence            35666666666666654321 1333344456666666666666666665 2221  112233334456666666666666


Q ss_pred             HHHHH
Q 015765          203 SILAE  207 (401)
Q Consensus       203 ~~~~~  207 (401)
                      ++|++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.85  E-value=0.00013  Score=60.16  Aligned_cols=94  Identities=21%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHH
Q 015765          263 CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       263 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a  341 (401)
                      .+.+++.+|+..|.+..+.... |.+-|..=..+|.+.|.++.|++=.+..+..  .|. ..+|..|..+|...|++++|
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence            3445566666666655554221 4444444555555666666655555555542  232 34555555556666666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHH
Q 015765          342 LKVCRASMAKGWVPHFSTMK  361 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~  361 (401)
                      ++.|++.++.  .|+-.+|.
T Consensus       169 ~~aykKaLel--dP~Ne~~K  186 (304)
T KOG0553|consen  169 IEAYKKALEL--DPDNESYK  186 (304)
T ss_pred             HHHHHhhhcc--CCCcHHHH
Confidence            6655555532  44444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.84  E-value=0.0095  Score=49.62  Aligned_cols=58  Identities=7%  Similarity=0.146  Sum_probs=43.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          327 MFTYFLCQGGEYETALKVCRASMAK--GWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       327 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      .+.+.|.+.|.+..|..-++.+++.  +.+........++.+|.+.|..++|.++...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            4566678888888888888888876  444455667778888888888888888776654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.83  E-value=8.4e-05  Score=50.57  Aligned_cols=80  Identities=15%  Similarity=0.147  Sum_probs=33.9

Q ss_pred             CCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015765           89 NHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRI  168 (401)
Q Consensus        89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  168 (401)
                      |+++.|+.+++++.......++...+..+..+|.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            455555555555552211111233333345555555555555555554 2211 11223333334455555555555555


Q ss_pred             HH
Q 015765          169 FT  170 (401)
Q Consensus       169 ~~  170 (401)
                      |+
T Consensus        81 l~   82 (84)
T PF12895_consen   81 LE   82 (84)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.82  E-value=0.0001  Score=47.31  Aligned_cols=62  Identities=16%  Similarity=0.116  Sum_probs=45.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          328 FTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       328 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      +...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+..|.+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3456677888888888888887765 4466777777788888888888888888887777665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.81  E-value=0.00052  Score=58.59  Aligned_cols=133  Identities=14%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH-HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL-YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL  154 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  154 (401)
                      .+|..++..+.+.+..+.|.++|.+....+...  ..+|...... |...++.+.|.++|+...+. ++.+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence            357777777777777788888888777433322  3344444444 33345666688888777664 3556677777777


Q ss_pred             HHHhcCCHHHHHHHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015765          155 GCILSKNYEEVKRIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRRK  211 (401)
Q Consensus       155 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  211 (401)
                      .+.+.|+.+.|..+|++......... ....|...+..=.+.|+++.+.++.+++.+.
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            77777888888888877765421111 1236777777666777777777777776653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.81  E-value=0.018  Score=49.70  Aligned_cols=309  Identities=12%  Similarity=0.087  Sum_probs=179.8

Q ss_pred             ChhHHHHHhhhccCCCCCCccHhHHHHHHHHHH--hCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH--HHhcCChHH
Q 015765           54 NPFRILDICCGASLAPESPLDRMAFSIAVSKLS--QANHFNAISQLLEELKTRPDLRQNERFHVHSIVL--YGQANMIDH  129 (401)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~  129 (401)
                      .|..+-..|+...++.       -|..+-.++.  -.|+-..|.++-.+..  +-+..|..-+-.++.+  -.-.|+++.
T Consensus        68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~  138 (531)
T COG3898          68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYED  138 (531)
T ss_pred             CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHH
Confidence            4566667777665543       2555554443  3567777777766544  1222223334444443  335688899


Q ss_pred             HHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 015765          130 AMQTFEEMDKYGLRQSVDALN--ALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE  207 (401)
Q Consensus       130 a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  207 (401)
                      |.+-|+.|..   .|......  .|.-..-+.|+.+.|..+-+......  +.=...+...+...|..|+|+.|+++++.
T Consensus       139 Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~  213 (531)
T COG3898         139 ARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDA  213 (531)
T ss_pred             HHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence            9999988875   23332221  12222346788888887777664331  22345677888888888999999988887


Q ss_pred             HHhCC-CCCCHHh--HHHHHHHHH---ccCChHHHHHHHHHHHHcCCCCCch-hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765          208 MRRKS-IRPNATD--FGLLLAGFY---KEHKYEDVGKVLQMMEKCGIASGVN-VYNIRIQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       208 ~~~~~-~~~~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~  280 (401)
                      -+... +.++..-  -..|+.+-.   -..+...|...-.+..+.  .|+.. .--.-..++.+.|+..++-.+++.+-+
T Consensus       214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK  291 (531)
T COG3898         214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWK  291 (531)
T ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence            65432 3444321  222332211   123455555555555443  44432 223345677888888888888888888


Q ss_pred             CCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 015765          281 RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG-GCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFS  358 (401)
Q Consensus       281 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  358 (401)
                      ....|+.  +.  +..+.+.|+.  +..-+++..+. .++| +......+..+-...|++..|..--+....  ..|...
T Consensus       292 ~ePHP~i--a~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres  363 (531)
T COG3898         292 AEPHPDI--AL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRES  363 (531)
T ss_pred             cCCChHH--HH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhh
Confidence            7555543  22  2223445543  33333333221 1334 455666667777788888877776665553  367777


Q ss_pred             HHHHHHHHHHc-cCCHHHHHHHHHHHHhc
Q 015765          359 TMKSLVTGLAS-ISKVAEANELIGLMKKR  386 (401)
Q Consensus       359 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~  386 (401)
                      .|..|.+.-.. .||-.++...+-+..+.
T Consensus       364 ~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         364 AYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            88777776644 48888888887777654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.80  E-value=0.0018  Score=50.90  Aligned_cols=94  Identities=7%  Similarity=0.031  Sum_probs=67.5

Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH
Q 015765          109 QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN  186 (401)
Q Consensus       109 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  186 (401)
                      .....+..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+++..+..  +-+...+.
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  110 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALN  110 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHH
Confidence            3355677777888889999999999998876542222  4577788888899999999999998887542  33455666


Q ss_pred             HHHHHHHhcCChhHHHHH
Q 015765          187 KVIKSFCESGDSSSVYSI  204 (401)
Q Consensus       187 ~l~~~~~~~~~~~~a~~~  204 (401)
                      .+...+...|+...+..-
T Consensus       111 ~lg~~~~~~g~~~~a~~~  128 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGD  128 (172)
T ss_pred             HHHHHHHHcCChHhHhhC
Confidence            677777777765444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.80  E-value=0.019  Score=49.70  Aligned_cols=106  Identities=15%  Similarity=0.099  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015765          254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC  333 (401)
Q Consensus       254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  333 (401)
                      +.+..|.-+...|+...|.++-.+..    -|+..-|...+.+++..++|++-.++...      +-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            45555666677888888888766653    46888888889999999999887776432      223467888889999


Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 015765          334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANEL  379 (401)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  379 (401)
                      +.|+..+|..++.+     ++     +..-+..|.+.|++.+|.+.
T Consensus       249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence            99999888888876     11     24456777888888888665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.76  E-value=0.0018  Score=48.82  Aligned_cols=101  Identities=9%  Similarity=0.019  Sum_probs=75.9

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +....-.+...+...|++++|..+|+-+....  +.+...|-.|..++-..|++++|+..|......+ +.++..+-.+.
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag  110 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence            34455556666778888888888888877332  3445677778888888888888888888887776 46777788888


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcC
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYG  177 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~  177 (401)
                      .++...|+.+.|.+.|+..+...+
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhc
Confidence            888888888888888887765543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.76  E-value=0.0011  Score=58.78  Aligned_cols=91  Identities=9%  Similarity=0.038  Sum_probs=60.9

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      ...+...|++++|++.|++.....  +.+...+..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            445556677777777777776332  3335566666777777777777777777777664 4456666667777777777


Q ss_pred             HHHHHHHHHhchhh
Q 015765          162 YEEVKRIFTEFPKV  175 (401)
Q Consensus       162 ~~~a~~~~~~~~~~  175 (401)
                      +++|+..|++..+.
T Consensus        86 ~~eA~~~~~~al~l   99 (356)
T PLN03088         86 YQTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777777543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.75  E-value=0.001  Score=52.09  Aligned_cols=64  Identities=8%  Similarity=-0.065  Sum_probs=37.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQ--SVDALNALLLGCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  174 (401)
                      ...+..+...+...|++++|+..|++.......+  ...++..+...+...|++++|+..+++..+
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555556666666677666666665442111  123556666666666666666666666653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.74  E-value=0.00026  Score=45.85  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=41.4

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHH
Q 015765          123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV  188 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  188 (401)
                      ..|++++|+++|+++.+.. +.+...+..+..+|.+.|++++|.++++++...   .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence            5677777777777776664 446666777777777777777777777777654   5554444433

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.73  E-value=0.0013  Score=49.50  Aligned_cols=95  Identities=11%  Similarity=-0.043  Sum_probs=63.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ  334 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  334 (401)
                      .-.+..-+...|++++|.++|+.+...... +..-|..|..++...|++++|+..|....... +-|+..+-.+..++..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence            334444555667777777777777665322 45566667777777777777777777777654 3456666777777777


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 015765          335 GGEYETALKVCRASMAK  351 (401)
Q Consensus       335 ~g~~~~a~~~~~~~~~~  351 (401)
                      .|+.+.|.+.|+..+..
T Consensus       116 lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        116 CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            77777777777766554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.72  E-value=0.026  Score=48.95  Aligned_cols=126  Identities=12%  Similarity=0.135  Sum_probs=93.5

Q ss_pred             HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 015765          217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG  296 (401)
Q Consensus       217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  296 (401)
                      ..+.+..|.-+...|+...|.++-.+.   . .|+...|...+.+++..++|++..++-..   +   -++..|..++.+
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~  246 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA  246 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence            345666677778889988888776655   2 47888999999999999999988876432   1   245788999999


Q ss_pred             HhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015765          297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA  368 (401)
Q Consensus       297 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (401)
                      |.+.|+..+|..+...+          .+..-+..|.+.|++.+|.+.-.+.      -|...+..+...+-
T Consensus       247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~~  302 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRCP  302 (319)
T ss_pred             HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHCC
Confidence            99999999999888762          2356678889999999998875432      24455555554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.71  E-value=0.0066  Score=46.69  Aligned_cols=161  Identities=10%  Similarity=0.038  Sum_probs=111.4

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY  121 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  121 (401)
                      -+.+...+++.-||++.+.-......   ..|+..--..+..++.+.|+..+|...|++.. .+.+..|......+.++.
T Consensus        59 a~~~~~a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aq  134 (251)
T COG4700          59 AHTLLMALQQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQ  134 (251)
T ss_pred             hHHHHHHHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHH
Confidence            34455566666677776554433322   33466667778889999999999999999988 555666788888888888


Q ss_pred             HhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015765          122 GQANMIDHAMQTFEEMDKYGL-RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS  200 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (401)
                      ...+++..|...++.+-+... ..++.+.-.+.+.+...|...+|+.-|+....-   -|+...-......+.+.|+.++
T Consensus       135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~e  211 (251)
T COG4700         135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLRE  211 (251)
T ss_pred             HhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhH
Confidence            899999999999998877531 012233445677888889999999999888644   5665544444455567776666


Q ss_pred             HHHHHHHHH
Q 015765          201 VYSILAEMR  209 (401)
Q Consensus       201 a~~~~~~~~  209 (401)
                      +..-+.++.
T Consensus       212 a~aq~~~v~  220 (251)
T COG4700         212 ANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHH
Confidence            655544443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.71  E-value=0.0025  Score=54.63  Aligned_cols=32  Identities=6%  Similarity=-0.142  Sum_probs=22.7

Q ss_pred             hhhchhHHHHHHHHHHhcCCChhHHHHHhhhc
Q 015765           34 AALTIKEKKRATIARLKSESNPFRILDICCGA   65 (401)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~   65 (401)
                      ..-.....+..+...++..+++++|.+.|..+
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kA   61 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKA   61 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            34455667888888888888888888777654

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.71  E-value=0.0012  Score=52.22  Aligned_cols=104  Identities=12%  Similarity=0.128  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 015765          143 RQSVDALNALLLGCIL-----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA  217 (401)
Q Consensus       143 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  217 (401)
                      ..+..+|..+++.|.+     .|.++-....+..| .++|+.-|..+|+.|++.+=+ |.+- -..+|+.+--       
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------  113 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------  113 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc-------
Confidence            4566777777777653     35666666666676 556777777777777766543 2211 0111111100       


Q ss_pred             HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 015765          218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK  266 (401)
Q Consensus       218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  266 (401)
                              -  .-.+-+-|++++++|...|+-||..++..+++.+++.+
T Consensus       114 --------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  114 --------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             --------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence                    0  11234566777777777777777777777777776554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.67  E-value=0.0011  Score=55.60  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 015765          290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS----YCFFMFTYFLCQGGEYETALKVCRASMAKG--WVPHFSTMKSL  363 (401)
Q Consensus       290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l  363 (401)
                      |...+..+.+.|++++|...|+.+++.  .|+.    ..+..+...|...|++++|...|+.+.+..  -+.....+..+
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            444443334456666666666666654  2332    345556666666666666666666666541  11223444445


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          364 VTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       364 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      ...+...|+.++|.++++++.+.+|.+.
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            5556666777777777777766666543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.66  E-value=7e-05  Score=48.57  Aligned_cols=56  Identities=18%  Similarity=0.283  Sum_probs=32.2

Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      +.|++++|.++++++.... +-+......+..+|.+.|++++|.++++++....|.+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            4566666666666665543 3355555566666666666666666666666555544

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.64  E-value=0.0029  Score=49.58  Aligned_cols=97  Identities=10%  Similarity=0.030  Sum_probs=71.1

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRP-DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNAL  152 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  152 (401)
                      ....|..+...+...|++++|...|+...... +......++..+...+...|++++|++.++...+.. +....++..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence            45567888888889999999999999987332 222224578888999999999999999999988764 4445666666


Q ss_pred             HHHHH-------hcCCHHHHHHHHHh
Q 015765          153 LLGCI-------LSKNYEEVKRIFTE  171 (401)
Q Consensus       153 ~~~~~-------~~~~~~~a~~~~~~  171 (401)
                      ...+.       ..|+++.|...+++
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            66666       66676655444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.64  E-value=0.00029  Score=45.79  Aligned_cols=66  Identities=17%  Similarity=0.168  Sum_probs=44.9

Q ss_pred             HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcCC
Q 015765          322 SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS-KVAEANELIGLMKKRFP  388 (401)
Q Consensus       322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~  388 (401)
                      ...|..+...+...|++++|+..|++.++.+ +.+...+..+..+|...| ++++|++.+++..+..|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4566666777777777777777777777664 345666677777777777 57777777777666543

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.63  E-value=0.036  Score=51.51  Aligned_cols=231  Identities=6%  Similarity=0.011  Sum_probs=139.2

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH----
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS----  117 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----  117 (401)
                      ++....++...| .+.|.++.+.       .|-+..|..+.......-.++.|...|-.....+++.. ..-...+    
T Consensus       667 lrD~~~Lve~vg-ledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~  737 (1189)
T KOG2041|consen  667 LRDVMNLVEAVG-LEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKE  737 (1189)
T ss_pred             hhhHHHHHHHhc-hHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHH
Confidence            344444444444 5566666543       23456888888888888888888888877665444422 1111111    


Q ss_pred             ---HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015765          118 ---IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE  194 (401)
Q Consensus       118 ---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  194 (401)
                         ...-+--|+|++|.++|-+|-++++         .+..+.+.|+|-.+.++++.--....-.--..+|+.+...+..
T Consensus       738 ~q~aei~~~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~  808 (1189)
T KOG2041|consen  738 QQRAEISAFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE  808 (1189)
T ss_pred             HHhHhHhhhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH
Confidence               1122234889999999988875432         3667778899988888876532110011223578888888888


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 015765          195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL  274 (401)
Q Consensus       195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  274 (401)
                      ...|++|.+.|..-..         -...+.++.+..++++.+.+...+     +.+....-.+.+++.+.|.-++|.+.
T Consensus       809 ~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a  874 (1189)
T KOG2041|consen  809 MMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEA  874 (1189)
T ss_pred             HHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHH
Confidence            8889999988876322         123566666666666655554443     33455566677777777777777666


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765          275 LDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM  313 (401)
Q Consensus       275 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m  313 (401)
                      +-+-.    .|     .+.+..|...+++.+|.++-+..
T Consensus       875 ~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~  904 (1189)
T KOG2041|consen  875 YLRRS----LP-----KAAVHTCVELNQWGEAVELAQRF  904 (1189)
T ss_pred             HHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence            53321    11     12345556666666666665543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.58  E-value=0.056  Score=50.34  Aligned_cols=51  Identities=6%  Similarity=0.036  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 015765          147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE  207 (401)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  207 (401)
                      ...-.+..++.+.|.-++|.+.|-+..     .|.     ..+..|...++|.+|.++-+.
T Consensus       853 ~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  853 ELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             chHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence            344445555556666666555554432     111     233445555555555555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.58  E-value=0.0021  Score=54.00  Aligned_cols=101  Identities=12%  Similarity=0.057  Sum_probs=67.7

Q ss_pred             HhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHH
Q 015765           75 RMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL--RQSVDALNA  151 (401)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~  151 (401)
                      ...|...+....+.|++++|+..|+.+.. .|+.+-....+..+...|...|++++|...|+.+.+.-.  +.....+..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34566666555667888888888887773 343332245667777788888888888888888775421  112444555


Q ss_pred             HHHHHHhcCCHHHHHHHHHhchhh
Q 015765          152 LLLGCILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       152 l~~~~~~~~~~~~a~~~~~~~~~~  175 (401)
                      +...+...|+.++|..+|+++.+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            566677788888888888888765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0059  Score=50.92  Aligned_cols=104  Identities=12%  Similarity=0.073  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015765          286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG---GEYETALKVCRASMAKGWVPHFSTMKS  362 (401)
Q Consensus       286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (401)
                      |...|..|...|...|+++.|..-|.+..+.. .+|...+..+..++...   ....++..+|+++...+ +-|+.....
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence            56677777777777777777777777666542 23444444444443322   23456677777776654 445666666


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          363 LVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      |...+...|++.+|...|+.|.+..|++.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            66777777777777777777777665543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.53  E-value=0.01  Score=55.25  Aligned_cols=140  Identities=10%  Similarity=-0.003  Sum_probs=78.7

Q ss_pred             CCCCchhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcC--------CChHHHHHHHHHH
Q 015765          248 IASGVNVYNIRIQSLCKL-----KRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKE--------GNLEGAKKLFASM  313 (401)
Q Consensus       248 ~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------~~~~~a~~~~~~m  313 (401)
                      .+.+...|...+.+....     ++...|..+|++..+.  .|+ ...|..+..++...        .+...+.+.....
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            344556666666664432     2255677777777765  333 23333332222211        1122333333333


Q ss_pred             HhC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          314 TNG-GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       314 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      ... ....+...|..+.-.....|++++|...++++.+.+  |+...|..+...+...|+.++|.+.+++.....|.+.
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            222 123344566666555556677777777777777664  5667777777777777777777777777776655433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.51  E-value=0.026  Score=43.53  Aligned_cols=125  Identities=19%  Similarity=0.159  Sum_probs=62.2

Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC---CCCCHhhH
Q 015765          249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG---CEPDSYCF  325 (401)
Q Consensus       249 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~  325 (401)
                      .|+...--.+..+....|+..+|...|++...--..-|....-.+.++....+++..|...++++.+..   -.||  +.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence            344444455555555556666665555555443233344445555555555555555555555555432   1122  23


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015765          326 FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN  377 (401)
Q Consensus       326 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  377 (401)
                      ..+.+.+...|...+|+.-|+...+.  -|+...-......+.+.|+.+++.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence            34445555556665566655555544  234433333444455555444443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.50  E-value=0.03  Score=45.31  Aligned_cols=59  Identities=15%  Similarity=0.200  Sum_probs=31.8

Q ss_pred             HHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015765           82 VSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY  140 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  140 (401)
                      ...+...|++.+|++.|+.+. ..|..+.-....-.++.++.+.|+++.|...+++..+.
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344456666666666666666 33333333444555556666666666666666665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.49  E-value=0.011  Score=42.81  Aligned_cols=90  Identities=14%  Similarity=0.057  Sum_probs=54.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---H-HhHHHHHH
Q 015765          117 SIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---S-ETYNKVIK  190 (401)
Q Consensus       117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~-~~~~~l~~  190 (401)
                      ...++-..|+.++|+.+|++..+.|....  ...+..+...+...|++++|+.++++...+   .|+   . .....+..
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHH
Confidence            44456667777777777777777665433  234445556677777777777777777654   233   1 22222334


Q ss_pred             HHHhcCChhHHHHHHHHHH
Q 015765          191 SFCESGDSSSVYSILAEMR  209 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~  209 (401)
                      ++...|+.++|++.+-...
T Consensus        84 ~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            5566677777777765544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.48  E-value=0.024  Score=45.92  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=10.2

Q ss_pred             HHHHhcCCChHHHHHHHHHHHh
Q 015765          294 IHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       294 i~~~~~~~~~~~a~~~~~~m~~  315 (401)
                      ...|.+.|.+..|..-++.+++
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~  169 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIE  169 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHH
Confidence            3344455555555555555444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.47  E-value=0.00073  Score=43.22  Aligned_cols=54  Identities=19%  Similarity=0.080  Sum_probs=26.6

Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765          119 VLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      ..+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++.
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33445555555555555555443 2344445555555555555555555555554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.44  E-value=0.0026  Score=52.77  Aligned_cols=95  Identities=16%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015765           85 LSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE  164 (401)
Q Consensus        85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  164 (401)
                      +.+.+++++|++.|.+.+..  .|.|...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            44555666666666665522  23444555555666666666666666665555543 3334555566666666666666


Q ss_pred             HHHHHHhchhhcCCCCCHHhH
Q 015765          165 VKRIFTEFPKVYGIEPNSETY  185 (401)
Q Consensus       165 a~~~~~~~~~~~~~~~~~~~~  185 (401)
                      |++.|++..   .+.|+..+|
T Consensus       168 A~~aykKaL---eldP~Ne~~  185 (304)
T KOG0553|consen  168 AIEAYKKAL---ELDPDNESY  185 (304)
T ss_pred             HHHHHHhhh---ccCCCcHHH
Confidence            666665554   235555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.022  Score=49.51  Aligned_cols=88  Identities=14%  Similarity=0.063  Sum_probs=48.3

Q ss_pred             hcCCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 015765          298 GKEGNLEGAKKLFASMTNG---GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVA  374 (401)
Q Consensus       298 ~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  374 (401)
                      .+.|++..|.+.|.+.+..   .++|+...|.....+..+.|+.++|+.-.++..+.+ ..-...+..-..++...++|+
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777766643   344555556555666666677777776666655432 001112222223344456666


Q ss_pred             HHHHHHHHHHhc
Q 015765          375 EANELIGLMKKR  386 (401)
Q Consensus       375 ~a~~~~~~~~~~  386 (401)
                      +|.+-+++..+.
T Consensus       339 ~AV~d~~~a~q~  350 (486)
T KOG0550|consen  339 EAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHhh
Confidence            666666666554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.39  E-value=0.018  Score=53.58  Aligned_cols=143  Identities=10%  Similarity=0.044  Sum_probs=92.8

Q ss_pred             CCCCHHhHHHHHHHHHccC-----ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 015765          213 IRPNATDFGLLLAGFYKEH-----KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL--------KRSEEAKALLDGML  279 (401)
Q Consensus       213 ~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~  279 (401)
                      .+.+...|...+++.....     +...|..+|++..+.. +-....|..+..++...        ++...+.+...+..
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            4556777877777654322     2567888888888763 22334444433333221        12233444444333


Q ss_pred             HC-CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 015765          280 SR-GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFS  358 (401)
Q Consensus       280 ~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  358 (401)
                      .. ....+...|.++.......|++++|...++++.+.+  |+...|..+...+...|+.++|.+.++++...+  |...
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence            32 123345677777666667899999999999998864  688889999999999999999999999887663  4444


Q ss_pred             HH
Q 015765          359 TM  360 (401)
Q Consensus       359 ~~  360 (401)
                      +|
T Consensus       488 t~  489 (517)
T PRK10153        488 TL  489 (517)
T ss_pred             hH
Confidence            43

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.022  Score=46.51  Aligned_cols=155  Identities=14%  Similarity=0.030  Sum_probs=93.4

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      +..+......+.-+.+|++=.        ..+.+.++..+.-.|.+.-...++++.++...+.++.....|.+.-.+.||
T Consensus       156 i~~~e~~~~~ESsv~lW~KRl--------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD  227 (366)
T KOG2796|consen  156 LANLEQGLAEESSIRLWRKRL--------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD  227 (366)
T ss_pred             HHHHHhccchhhHHHHHHHHH--------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc
Confidence            333333333355666666533        234555566666667777777777777776655666777777777777788


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHH-----HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKV-----IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV  236 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  236 (401)
                      .+.|...|++..+..+ ..|..+++.+     ...|.-.+++..|...+.+..... +.|....|.-.-+..-.|+..+|
T Consensus       228 ~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DA  305 (366)
T KOG2796|consen  228 IKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDA  305 (366)
T ss_pred             HHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHH
Confidence            8777777776644322 3343333333     233455667777777777765543 23444445444444556777777


Q ss_pred             HHHHHHHHHc
Q 015765          237 GKVLQMMEKC  246 (401)
Q Consensus       237 ~~~~~~~~~~  246 (401)
                      .+.++.|.+.
T Consensus       306 iK~~e~~~~~  315 (366)
T KOG2796|consen  306 LKQLEAMVQQ  315 (366)
T ss_pred             HHHHHHHhcc
Confidence            7777777775

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.07  Score=43.69  Aligned_cols=131  Identities=9%  Similarity=0.105  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH----
Q 015765          149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLL----  224 (401)
Q Consensus       149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll----  224 (401)
                      .+.++.++...|.+.-..+++.+..+. ..+.+......+++.-.+.||.+.|..+|++..+..-+.|..+++.++    
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            344555555566666666666666543 223445555666666666777777777777665543344444444333    


Q ss_pred             -HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          225 -AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       225 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                       ..+.-.+++..+...+.++...+ +.+....|.-.-+..-.|+..+|.+.++.|...
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             23344455566666665555543 233444444444444456666666666666655

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.29  E-value=0.024  Score=41.17  Aligned_cols=54  Identities=7%  Similarity=0.065  Sum_probs=25.9

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765          192 FCESGDSSSVYSILAEMRRKSIRPN--ATDFGLLLAGFYKEHKYEDVGKVLQMMEK  245 (401)
Q Consensus       192 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  245 (401)
                      +-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..+++....
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344555555555555555443322  12333344445555555555555555444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.25  E-value=0.12  Score=45.67  Aligned_cols=134  Identities=15%  Similarity=0.207  Sum_probs=103.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH-HHHHH
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRG-IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF-FMFTY  330 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~  330 (401)
                      .+|...+.+..+..-++.|..+|-+..+.| +.+++..+++++..++ .|+..-|..+|+--...  -||...| ...+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            456667777777888999999999999988 6788899999999875 57888999999875554  3554444 55677


Q ss_pred             HHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          331 FLCQGGEYETALKVCRASMAKGWVPH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      .+...++-+.|..+|+..... +..+  ...|..++.--..-|+...+..+=+.+.+.+|..
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            778889999999999965543 1222  4688899998888999999988888888877643

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.25  E-value=0.0061  Score=44.68  Aligned_cols=55  Identities=13%  Similarity=0.105  Sum_probs=41.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          141 GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       141 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      ...|+..+..+++.+|+..|++..|.++.+.+.+.++++-+...|..|+.-....
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            3567788888888888888888888888888888888777777777777655433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.24  E-value=0.014  Score=44.49  Aligned_cols=58  Identities=16%  Similarity=0.305  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765          149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEM  208 (401)
Q Consensus       149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  208 (401)
                      ...++..+...|++++|..+.+.+....  +.|...|..+|.+|...|+...|.+.|+++
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3344444555555555555555554432  334445555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.24  E-value=0.0017  Score=42.64  Aligned_cols=59  Identities=19%  Similarity=0.129  Sum_probs=32.7

Q ss_pred             HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      .|.+.+++++|.++++++...+ +.++..+......+.+.|++++|.+.++...+..|.+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~   62 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD   62 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence            4455556666666666555553 3344555555555556666666666666665554433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.23  E-value=0.0048  Score=53.41  Aligned_cols=133  Identities=11%  Similarity=0.003  Sum_probs=82.8

Q ss_pred             HhHHHHHHHHHccCChHHHHHHHHHH----HHcCCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CcCH
Q 015765          218 TDFGLLLAGFYKEHKYEDVGKVLQMM----EKCGIA-SGVNVYNIRIQSLCKLKRSEEAKALLDGMLS----RGI-KPNL  287 (401)
Q Consensus       218 ~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~p~~  287 (401)
                      ..|..+.+.|.-.|+++.|+...+.-    .+.|-. .-...+..+..++.-.|+++.|.+.|+.-..    .|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            45666777777778888887665432    222211 1224566677777778888888887775432    221 1233


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHh----C-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASMTN----G-GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      .+..+|...|.-..++++|+.++.+-+.    . ...-....+.+|..++...|..++|+.+.+.-.+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4566677777777778888877765332    1 1122345677788888888888888877665443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.19  E-value=0.12  Score=45.46  Aligned_cols=94  Identities=6%  Similarity=0.018  Sum_probs=55.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015765          187 KVIKSFCESGDSSSVYSILAEMRRKS---IRPNATDFGLLLAGFYK---EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ  260 (401)
Q Consensus       187 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  260 (401)
                      .++-.|....+++...++++.+....   +.-....-....-++.+   .|+.++|.+++..+....-.++..+|..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            44445777788888888888886642   11122222233445555   7788888888877555545667777777766


Q ss_pred             HHHhc---------CCHHHHHHHHHHHHH
Q 015765          261 SLCKL---------KRSEEAKALLDGMLS  280 (401)
Q Consensus       261 ~~~~~---------~~~~~a~~~~~~~~~  280 (401)
                      .|-..         ...++|...|.+.-+
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            65321         124455555554444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.16  E-value=0.0024  Score=41.36  Aligned_cols=59  Identities=20%  Similarity=0.186  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhc
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK-NYEEVKRIFTEF  172 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~  172 (401)
                      ++..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            33444444444444444444444444433 223344444444444444 344444444443

...

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=97.04  E-value=0.069  Score=38.71  Aligned_cols=65  Identities=12%  Similarity=0.165  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW  353 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  353 (401)
                      ......+......|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            334445566666777777777777766432 56666667777777777777777777777777764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.03  E-value=0.0047  Score=45.26  Aligned_cols=85  Identities=16%  Similarity=0.112  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---------------GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      |..++..+|.++++.|+.+....+++..-.-               ...|+..+..+++.+|+..|++..|+++++...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            4567888888888999988888888765321               2346667777777777777777777777776655


Q ss_pred             C-CCCCCHHHHHHHHHHHHcc
Q 015765          351 K-GWVPHFSTMKSLVTGLASI  370 (401)
Q Consensus       351 ~-~~~~~~~~~~~l~~~~~~~  370 (401)
                      . +++.+..+|..|++-....
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHHHh
Confidence            5 5666667777777655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.025  Score=47.28  Aligned_cols=101  Identities=8%  Similarity=-0.010  Sum_probs=73.7

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhchhhcCCCCCHHh
Q 015765          108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK---NYEEVKRIFTEFPKVYGIEPNSET  184 (401)
Q Consensus       108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~  184 (401)
                      |.|..-|-.|..+|...|+++.|...|.+..+.. +++...+..+..++..+.   ...++..+|+++.+..  +-|+.+
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ira  229 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRA  229 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHH
Confidence            4445678888888888888888888888887765 556777777766655432   4567888888887542  445556


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015765          185 YNKVIKSFCESGDSSSVYSILAEMRRK  211 (401)
Q Consensus       185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  211 (401)
                      ...|...+...|++.+|...|+.|.+.
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            666777788888888888888888876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.97  E-value=0.0063  Score=39.87  Aligned_cols=54  Identities=13%  Similarity=0.068  Sum_probs=28.0

Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  174 (401)
                      .|.+.+++++|.++++.+.+.+ +.+...+.....++...|++++|.+.|+...+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3445555555555555555543 33444444455555555555555555555543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.96  E-value=0.0015  Score=37.89  Aligned_cols=40  Identities=18%  Similarity=0.265  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765          358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  397 (401)
                      .++..+..+|...|++++|.++++++++..|.|...|..|
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            3567788888888999999999998888888888877665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.93  E-value=0.011  Score=45.03  Aligned_cols=57  Identities=19%  Similarity=0.222  Sum_probs=27.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          291 KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRAS  348 (401)
Q Consensus       291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  348 (401)
                      ..++..+...|++++|.++.+.+.... +-+...|..+|.+|...|+...|.++|+++
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            334444445555555555555555432 234445555555555555555555555543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.92  E-value=0.036  Score=45.78  Aligned_cols=101  Identities=17%  Similarity=0.236  Sum_probs=47.9

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH
Q 015765          289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGC--EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG--WVPHFSTMKSLV  364 (401)
Q Consensus       289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~  364 (401)
                      .|+.-+..+ +.|++..|.+.|...++...  .-....+-.|..++...|+++.|..+|..+.+.-  -+--+..+-.|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            344444333 34445555555555554310  0112233444555555555555555555554431  111234444555


Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          365 TGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       365 ~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      ....+.|+.++|..+|+++.+.+|..
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            55555555666666666655555544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.92  E-value=0.24  Score=43.12  Aligned_cols=289  Identities=11%  Similarity=0.064  Sum_probs=185.7

Q ss_pred             CCChhHHHHHhhhccCCCCCCccHhHHHHHHHH--HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHH
Q 015765           52 ESNPFRILDICCGASLAPESPLDRMAFSIAVSK--LSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDH  129 (401)
Q Consensus        52 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  129 (401)
                      .||...|..+-.....  -..-|...+..++.+  -.-.|+++.|.+-|+.|...|....  --+..|....-+.|..+.
T Consensus        97 AGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRl--lGLRgLyleAqr~Garea  172 (531)
T COG3898          97 AGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRL--LGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             cCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHH--HhHHHHHHHHHhcccHHH
Confidence            4466666666544431  133344445555544  3457999999999999986554322  112233333457899999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH--HHHHHHHHh---cCChhHHHHH
Q 015765          130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY--NKVIKSFCE---SGDSSSVYSI  204 (401)
Q Consensus       130 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~---~~~~~~a~~~  204 (401)
                      |.++-+...+.- +.-...+...+...+..|+|+.|+++++.-....-+.++..--  ..|+.+-..   ..+...|...
T Consensus       173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            999888877654 4456788889999999999999999999886655566665432  233333221   2345556555


Q ss_pred             HHHHHhCCCCCCHH-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 015765          205 LAEMRRKSIRPNAT-DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR-G  282 (401)
Q Consensus       205 ~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~  282 (401)
                      -.+..+  +.||.. .-..-..++.+.|+..++-.+++.+=+....|+  .+  .+..+.+.|+.  +..-+++..+. .
T Consensus       252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~s  323 (531)
T COG3898         252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLES  323 (531)
T ss_pred             HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHh
Confidence            544433  455543 233445788899999999999999977654443  33  22333455543  33333333322 1


Q ss_pred             CCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-ccCCHHHHHHHHHHHHHCCCCC
Q 015765          283 IKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC-QGGEYETALKVCRASMAKGWVP  355 (401)
Q Consensus       283 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~  355 (401)
                      ++|| ..+-..+.++-...|++..|..--+....  ..|....|..|.+.-. ..|+-.++...+.+..+.--.|
T Consensus       324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            3444 56677778888889999988877666665  3688888888877654 4599999999998888764344

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.89  E-value=0.27  Score=43.27  Aligned_cols=29  Identities=7%  Similarity=-0.118  Sum_probs=18.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      ..+.+++.++.-.|+.++|.+..++|.+.
T Consensus       306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  306 WDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            34455666666666666666666666655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.86  E-value=0.4  Score=44.64  Aligned_cols=201  Identities=15%  Similarity=0.075  Sum_probs=98.5

Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH-----HHHHHHHhcCChhHHHHHHH
Q 015765          132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN-----KVIKSFCESGDSSSVYSILA  206 (401)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~  206 (401)
                      .-++++.+.|-.|+...   +...++-.|.+.+|-++|.+--.+   ..-...|+     -..+-+...|+.++-..+.+
T Consensus       621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~R  694 (1081)
T KOG1538|consen  621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIR  694 (1081)
T ss_pred             HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence            34566777776666643   344555667777777777655211   00001111     12233334444433333332


Q ss_pred             HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH------HHHHHcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 015765          207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL------QMMEKCGIAS---GVNVYNIRIQSLCKLKRSEEAKALLDG  277 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~------~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~  277 (401)
                      +-.+  ...+..-=......+...|+.++|..+.      +.+.+.+-+.   +..+...+...+-+...+..|-++|..
T Consensus       695 KRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k  772 (1081)
T KOG1538|consen  695 KRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK  772 (1081)
T ss_pred             HHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence            2111  0001111112334455678888877653      2222222222   233444444445555667777777777


Q ss_pred             HHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHh-----------hHHHHHHHHHccCCHHHHHHHHH
Q 015765          278 MLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY-----------CFFMFTYFLCQGGEYETALKVCR  346 (401)
Q Consensus       278 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~  346 (401)
                      |-+.         ..+++.....+++++|..+-+...+.  .||..           -|...-.+|.+.|+-.+|.++++
T Consensus       773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe  841 (1081)
T KOG1538|consen  773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE  841 (1081)
T ss_pred             hccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence            6542         34566777888888888877765543  33321           12222345555566666666665


Q ss_pred             HHHHC
Q 015765          347 ASMAK  351 (401)
Q Consensus       347 ~~~~~  351 (401)
                      ++...
T Consensus       842 QLtnn  846 (1081)
T KOG1538|consen  842 QLTNN  846 (1081)
T ss_pred             Hhhhh
Confidence            55443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.78  E-value=0.034  Score=48.46  Aligned_cols=134  Identities=14%  Similarity=0.046  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHh----CC-CCCCH
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGML----SRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTN----GG-CEPDS  322 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~  322 (401)
                      ..|..+-..|.-.|+++.|+..-+.-.    +-|-+. ....+..+..++.-.|+++.|.+.|+....    .| -....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            346666666777789999877654322    223221 235677788888889999999999886542    22 12334


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          323 YCFFMFTYFLCQGGEYETALKVCRASMAK-----GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      .+.-+|.+.|.-..++++|+.++.+=...     ...-....+.+|..+|...|..++|+.+.+.-.+.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            55667788888888899999988753221     12235678899999999999999999888776554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.76  E-value=0.0068  Score=40.34  Aligned_cols=61  Identities=8%  Similarity=0.056  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCC-chhHHHHHHHHHHhcCChHHHHHHHHHH
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQ-NERFHVHSIVLYGQANMIDHAMQTFEEM  137 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~  137 (401)
                      +|+.+...+...|++++|++.|++...    .+...+ ...++..+..+|...|++++|++.+++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455555555555555555555555441    111111 1333444444555555555555555443

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.72  E-value=0.077  Score=48.31  Aligned_cols=160  Identities=16%  Similarity=0.168  Sum_probs=95.9

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      .+...-.++++++.++.+.-.-.|.+|  ....+.++..+-+.|..+.|+++...-         .+   -.....+.|+
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~~---rFeLAl~lg~  333 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP---------DH---RFELALQLGN  333 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------HH---HHHHHHHCT-
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------HH---HhHHHHhcCC
Confidence            344556777888777665222223333  345677777777888888887764432         11   2344566788


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ  241 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  241 (401)
                      ++.|.++.++..       +...|..|.....+.|+++-|.+.|.+..         -|..++-.|.-.|+.+...++.+
T Consensus       334 L~~A~~~a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~  397 (443)
T PF04053_consen  334 LDIALEIAKELD-------DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAK  397 (443)
T ss_dssp             HHHHHHHCCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHH
Confidence            888877765552       55678888888888888888888887743         24556666777777777777777


Q ss_pred             HHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 015765          242 MMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG  277 (401)
Q Consensus       242 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  277 (401)
                      .....|-      +|....++...|+.++..+++.+
T Consensus       398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  398 IAEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666541      55566666667787777777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.71  E-value=0.0049  Score=41.04  Aligned_cols=62  Identities=18%  Similarity=0.178  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          324 CFFMFTYFLCQGGEYETALKVCRASMAK----GW-VPH-FSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      +|+.+...|...|++++|+..+++..+.    |- .|+ ..++..+...|...|++++|++++++..+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4555555566666666666666554433    10 111 34455566666666666666666666544

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.67  E-value=0.2  Score=46.34  Aligned_cols=178  Identities=20%  Similarity=0.170  Sum_probs=118.5

Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCC-----chhHHHHHHHHHh----cCCHHHH
Q 015765          202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASG-----VNVYNIRIQSLCK----LKRSEEA  271 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~ll~~~~~----~~~~~~a  271 (401)
                      .-+|+-+.+. +||   .+..++....-.||-+.+++.+.+..+.+ +...     .-.|+.++..++.    ..+.+.|
T Consensus       177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a  252 (468)
T PF10300_consen  177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA  252 (468)
T ss_pred             HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence            4444444443 333   34556777778899999999998876543 2111     1234444444443    4578889


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHH-HHHHhcCCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          272 KALLDGMLSRGIKPNLDTYKHL-IHGFGKEGNLEGAKKLFASMTNGG---CEPDSYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       272 ~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      .++++.+.+.  -|+...|... .+.+...|++++|.+.|+......   .+.....+--+...+.-.+++++|.+.|.+
T Consensus       253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~  330 (468)
T PF10300_consen  253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR  330 (468)
T ss_pred             HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence            9999999987  6776666543 455677899999999999766421   122344566667778889999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHH-HccCCH-------HHHHHHHHHHHhc
Q 015765          348 SMAKGWVPHFSTMKSLVTGL-ASISKV-------AEANELIGLMKKR  386 (401)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~-~~~g~~-------~~a~~~~~~~~~~  386 (401)
                      +.+.. ..+..+|..+..+| ...|+.       ++|.+++.++...
T Consensus       331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            99874 33455555444443 456777       8888888877654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.65  Score=44.03  Aligned_cols=315  Identities=13%  Similarity=0.071  Sum_probs=175.3

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCC---chHHHHHHHHhhhCCCCCCchhHHHHHH
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANH---FNAISQLLEELKTRPDLRQNERFHVHSI  118 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li  118 (401)
                      ...++..+...+.+..|+++..++...- .. ....|.....-+.+..+   -+.+..+-+++. .+ ..+ .-.|..+.
T Consensus       440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls-~~-~~~-~iSy~~iA  514 (829)
T KOG2280|consen  440 EEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS-AK-LTP-GISYAAIA  514 (829)
T ss_pred             hhhhhHHHHhcchhHHHHHHHHHhCCcc-cc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc-cc-CCC-ceeHHHHH
Confidence            3445677777778888888888875331 11 13455555555555532   222333444443 32 223 34566667


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcC----------CCCCHHh
Q 015765          119 VLYGQANMIDHAMQTFEEMDKYGLR----QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG----------IEPNSET  184 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~  184 (401)
                      .....+|+++.|..+++.=...+..    .+..-+...+.-+...|+.+....++-.+..+..          .+.....
T Consensus       515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~l  594 (829)
T KOG2280|consen  515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSL  594 (829)
T ss_pred             HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHH
Confidence            6667889999999888764443311    1222344556667778888887777776643210          0111111


Q ss_pred             HHHHHH--------HHHhcCChhHHHHHHH--HHHhCC-CCCCHHhHHHHHHHHHccCChHHH----------HHHHHHH
Q 015765          185 YNKVIK--------SFCESGDSSSVYSILA--EMRRKS-IRPNATDFGLLLAGFYKEHKYEDV----------GKVLQMM  243 (401)
Q Consensus       185 ~~~l~~--------~~~~~~~~~~a~~~~~--~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a----------~~~~~~~  243 (401)
                      |.-+++        .+.+.++-..+...|.  ...... +.+-........+.+.+.....-.          .++.+.+
T Consensus       595 Y~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L  674 (829)
T KOG2280|consen  595 YRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL  674 (829)
T ss_pred             HHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            221111        0111111111111111  100000 111112223334444444432211          1222222


Q ss_pred             HH-cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH
Q 015765          244 EK-CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS  322 (401)
Q Consensus       244 ~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  322 (401)
                      .. .|.....-+.+--+.-+...|+..+|.++-.+.+    -||...|-.=+.+++..+++++-+++-+.+.      .+
T Consensus       675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sP  744 (829)
T KOG2280|consen  675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SP  744 (829)
T ss_pred             HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CC
Confidence            22 2322333445555666677799999988877664    5688888888999999999988877765543      24


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 015765          323 YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELI  380 (401)
Q Consensus       323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  380 (401)
                      .-|.-+..+|.+.|+.++|.+++-+.-     +..    -.+.+|.+.|++.+|.++-
T Consensus       745 IGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  745 IGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             CCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence            568888999999999999999987532     111    5678888889988887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.23  Score=47.44  Aligned_cols=179  Identities=17%  Similarity=0.176  Sum_probs=117.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS  191 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  191 (401)
                      ...-+....+...++.|+.+-+.--   ..++  ........+-+.+.|++++|...|-+-...  +.|.     .++.-
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~k  406 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKK  406 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHH
Confidence            4555677777888888887765532   1222  222333445566789999998888766531  2332     35666


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015765          192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA  271 (401)
Q Consensus       192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  271 (401)
                      |.....+..-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|..  ..-....+..+.+.+-.++|
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a  482 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA  482 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence            67777788888889999888855 67777889999999999988877776554 2221  11245667777777777777


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765          272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~  314 (401)
                      ..+-.....     +......++.   ..+++++|++++..+.
T Consensus       483 ~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  483 ELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence            776554432     3444444444   5688899988887653

>PRK15331 chaperone protein SicA; Provisional

Probab=96.59  E-value=0.12  Score=39.48  Aligned_cols=89  Identities=13%  Similarity=-0.011  Sum_probs=69.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015765          261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET  340 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  340 (401)
                      -+...|++++|..+|.-+.-.+.. +..-|..|..+|...+++++|...|......+ .-|+..+-....++...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence            345679999999999988776533 56667777888888899999999998776554 3455556677888899999999


Q ss_pred             HHHHHHHHHHC
Q 015765          341 ALKVCRASMAK  351 (401)
Q Consensus       341 a~~~~~~~~~~  351 (401)
                      |...|....+.
T Consensus       124 A~~~f~~a~~~  134 (165)
T PRK15331        124 ARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHhC
Confidence            99999887763

>PRK15331 chaperone protein SicA; Provisional

Probab=96.58  E-value=0.22  Score=38.00  Aligned_cols=117  Identities=7%  Similarity=-0.053  Sum_probs=77.2

Q ss_pred             ChhHHHHHHHHHHhCCCCC------CHHh---HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015765          197 DSSSVYSILAEMRRKSIRP------NATD---FGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR  267 (401)
Q Consensus       197 ~~~~a~~~~~~~~~~~~~~------~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  267 (401)
                      +.++..+.+.+....|..+      +..+   .-...--+...|++++|..+|+-+.-.+. -+..-+..|..++-..++
T Consensus         8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~   86 (165)
T PRK15331          8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQ   86 (165)
T ss_pred             hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHH
Confidence            4455555555555555322      1222   12223345677888888888888877653 345556667777777888


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765          268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                      +++|...|......+. -|...+-....+|...|+.+.|...|....+
T Consensus        87 y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         87 FQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            8888888887766543 2555566677888888888888888888776

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.58  E-value=0.17  Score=36.83  Aligned_cols=140  Identities=16%  Similarity=0.168  Sum_probs=71.4

Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHH
Q 015765          122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSV  201 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  201 (401)
                      .-.|..++..++..+....   .+..-+|.+|--....-+-+-..++++.+-+-    .|...          .|++...
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis~----------C~NlKrV   75 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDISK----------CGNLKRV   75 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GGG-----------S-THHH
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCchh----------hcchHHH
Confidence            3456677777777776652   34555666665555555666666666665332    22222          2333333


Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      ...+-.+     ..+...+...++.....|+-+...+++..+.+.+ .++....-.+..+|.+.|+..++.+++.+.-+.
T Consensus        76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3333221     1133445555666667777777777777665432 455566666777777777777777777777766


Q ss_pred             CCC
Q 015765          282 GIK  284 (401)
Q Consensus       282 ~~~  284 (401)
                      |++
T Consensus       150 G~k  152 (161)
T PF09205_consen  150 GLK  152 (161)
T ss_dssp             T-H
T ss_pred             chH
Confidence            643

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.52  E-value=0.085  Score=39.19  Aligned_cols=114  Identities=14%  Similarity=0.045  Sum_probs=63.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 015765          261 SLCKLKRSEEAKALLDGMLSRGI--KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY  338 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  338 (401)
                      ...+.|++++|.+.|+.+...-.  .-....--.++.+|.+.+++++|...+++.++....-...-|...+.+++.-...
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~   98 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD   98 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence            34456778888777777776511  1123455566777777778888777777777653221223455555554433322


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcc
Q 015765          339 ETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGD  392 (401)
Q Consensus       339 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  392 (401)
                      +..   +..+.  +..-|             .+....|..-|+++++.+|.+..
T Consensus        99 ~~~---~~~~~--~~drD-------------~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   99 EGS---LQSFF--RSDRD-------------PTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             hhH---Hhhhc--ccccC-------------cHHHHHHHHHHHHHHHHCcCChh
Confidence            211   11111  11111             22245788888888888887653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.47  E-value=0.15  Score=46.48  Aligned_cols=157  Identities=10%  Similarity=0.002  Sum_probs=101.7

Q ss_pred             HHHHhcCChHHHHHHHH--HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015765          119 VLYGQANMIDHAMQTFE--EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG  196 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  196 (401)
                      ....-.++++.+.++..  ++.. .+  .....+.++..+-+.|..+.|+++.++-..             -.....+.|
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg  332 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLG  332 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT
T ss_pred             HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcC
Confidence            34456688888777775  2221 11  245577788888888989888887655422             234456788


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015765          197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD  276 (401)
Q Consensus       197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  276 (401)
                      +++.|.++.++      ..+...|..|.....+.|+++-|++.|++..+         +..++-.|.-.|+.+...++.+
T Consensus       333 ~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~  397 (443)
T PF04053_consen  333 NLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK  397 (443)
T ss_dssp             -HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred             CHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence            88888887654      23677899999999999999999888877543         6677888888898888888888


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015765          277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS  312 (401)
Q Consensus       277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  312 (401)
                      .....|-      ++....++.-.|+.+++.+++.+
T Consensus       398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  398 IAEERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            7777652      45555556667888888777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.44  E-value=0.62  Score=41.52  Aligned_cols=145  Identities=14%  Similarity=0.160  Sum_probs=106.5

Q ss_pred             HHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHH
Q 015765          217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTY-KHLI  294 (401)
Q Consensus       217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~li  294 (401)
                      ..+|...++...+....+.|..+|-++.+.+ ..+++.++++++..++. |+..-|.++|+--...  .||...| +..+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3457778888888888999999999998888 56788889999987765 7888899999876654  3455444 4556


Q ss_pred             HHHhcCCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765          295 HGFGKEGNLEGAKKLFASMTNGGCEPD--SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL  367 (401)
Q Consensus       295 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (401)
                      ..+...++-+.|..+|+..+.. +..+  ...|..+|..-...|+...+..+-++|...  .|...+......-|
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry  545 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY  545 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence            6667888999999999865543 1222  458889998888889998888888877764  44444444444444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.43  E-value=0.26  Score=37.11  Aligned_cols=124  Identities=18%  Similarity=0.126  Sum_probs=55.3

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765          222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG  301 (401)
Q Consensus       222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~  301 (401)
                      .++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++.   .   .+......+++.|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence            34444444455555555555555544 234445555555555432 2222222221   1   12222333455555555


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015765          302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG-GEYETALKVCRASMAKGWVPHFSTMKSLVTGLA  368 (401)
Q Consensus       302 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (401)
                      .++++..++.++-.         +...+..+... ++++.|.+++.+      ..+...|..++..+.
T Consensus        84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            55555555544421         22223333323 555556555543      124445555555443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.42  E-value=0.096  Score=38.93  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=56.7

Q ss_pred             HhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           75 RMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      ...|... ....+.|++++|++.|+.+.. -|..+-....-..++.+|.+.+++++|...+++.++.........|-..+
T Consensus        11 ~~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   11 QELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            3444444 445688999999999999883 34334445677778888999999999999999988865332233454455


Q ss_pred             HHHHhc
Q 015765          154 LGCILS  159 (401)
Q Consensus       154 ~~~~~~  159 (401)
                      .+++..
T Consensus        90 ~gL~~~   95 (142)
T PF13512_consen   90 RGLSYY   95 (142)
T ss_pred             HHHHHH
Confidence            554433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.40  E-value=0.14  Score=42.36  Aligned_cols=100  Identities=14%  Similarity=0.045  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHH
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL--RQSVDALNAL  152 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l  152 (401)
                      ..|+..+..+ +.|++..|.+-|.... .-|+..-....+-.|..++...|++++|..+|..+.+.-.  +.-+..+.-|
T Consensus       143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            3677766654 6677888888888877 3333333345666788888888888888888888766321  1124566667


Q ss_pred             HHHHHhcCCHHHHHHHHHhchhhc
Q 015765          153 LLGCILSKNYEEVKRIFTEFPKVY  176 (401)
Q Consensus       153 ~~~~~~~~~~~~a~~~~~~~~~~~  176 (401)
                      ..+..+.|+.++|...|+++.+++
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHC
Confidence            777888888888888888888774

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.39  E-value=0.44  Score=39.22  Aligned_cols=179  Identities=12%  Similarity=0.149  Sum_probs=83.1

Q ss_pred             HhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-----
Q 015765          193 CESGDSSSVYSILAEMRRKS--IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL-----  265 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----  265 (401)
                      .+.|++++|.+.|+.+..+.  -+-...+--.++-++.+.++++.|...+++....-......-|-..|.+++.-     
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            45566777777776665542  12233444555566666677777776666665543222223344444444321     


Q ss_pred             --CCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015765          266 --KRSE---EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET  340 (401)
Q Consensus       266 --~~~~---~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  340 (401)
                        .|..   .|..-|+++.++  -||.             .=...|..-+..+...   . ...=..+.+.|.+.|.+..
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~---L-A~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA---L-AGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH---H-HHHHHHHHHHHHHhcChHH
Confidence              1222   222233333332  1221             1111111111111100   0 0001233455667777777


Q ss_pred             HHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          341 ALKVCRASMAK--GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       341 a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      |..-+++|.+.  .-.-....+-.+..+|...|-.++|.+.-+-+..+.|.+
T Consensus       186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            77777776665  111123345556666777777777766665555554443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.38  E-value=0.44  Score=39.22  Aligned_cols=82  Identities=12%  Similarity=0.126  Sum_probs=54.3

Q ss_pred             HhHHHHHHHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           75 RMAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      ...|+..+.. .+.|++++|...|+.+. ..|..+-...+...++.++.+.++++.|+..+++..+.-.......|-..|
T Consensus        35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            3455554444 57888999999998888 445555556666777777888888999888888877643232333454455


Q ss_pred             HHHH
Q 015765          154 LGCI  157 (401)
Q Consensus       154 ~~~~  157 (401)
                      .+++
T Consensus       114 kgLs  117 (254)
T COG4105         114 KGLS  117 (254)
T ss_pred             HHHH
Confidence            5544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.35  E-value=0.34  Score=44.88  Aligned_cols=23  Identities=17%  Similarity=-0.006  Sum_probs=10.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 015765          259 IQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       259 l~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      ...+.-..++++|.+.|..+.+.
T Consensus       312 ~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  312 AWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHchHHHHHHHHHHHHhc
Confidence            33344444555555555554443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.32  E-value=0.59  Score=40.01  Aligned_cols=163  Identities=14%  Similarity=0.104  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHccCChH---HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015765          219 DFGLLLAGFYKEHKYE---DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH  295 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  295 (401)
                      ++..++.+|...+..+   +|.++++.+.... +....++-.-+..+.+.++.+.+.+++.+|...- ......+...+.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            4455666666665544   3444445553332 2234445555666666677777777777777652 112233444333


Q ss_pred             HH---hcCCChHHHHHHHHHHHhCCCCCCHh-hHHHH-H---HHHHccC------CHHHHHHHHHHHHHC-CCCCCHHHH
Q 015765          296 GF---GKEGNLEGAKKLFASMTNGGCEPDSY-CFFMF-T---YFLCQGG------EYETALKVCRASMAK-GWVPHFSTM  360 (401)
Q Consensus       296 ~~---~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l-i---~~~~~~g------~~~~a~~~~~~~~~~-~~~~~~~~~  360 (401)
                      .+   .. .....+...+..+....+.|... ....+ +   -...+.+      .++....+++...+. +.+.+..+-
T Consensus       164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            33   22 23345555555555444444432 11111 1   1111211      134444444432222 223333332


Q ss_pred             HHH-------HHHHHccCCHHHHHHHHHHHH
Q 015765          361 KSL-------VTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       361 ~~l-------~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      .++       ...+.+.+++++|.+.|+-..
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            222       233567899999999888554

It is also involved in sporulation [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.26  E-value=0.79  Score=40.92  Aligned_cols=142  Identities=13%  Similarity=0.055  Sum_probs=86.3

Q ss_pred             HHhcCCChhHHHHHhhhccCCCC---CCcc-HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH--H
Q 015765           48 RLKSESNPFRILDICCGASLAPE---SPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL--Y  121 (401)
Q Consensus        48 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~  121 (401)
                      .+..+++..+|..+|-.......   .... ...-+.++++|- .++.+.....+..+....+..    .|..+..+  +
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s----~~l~LF~~L~~   89 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKS----AYLPLFKALVA   89 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCc----hHHHHHHHHHH
Confidence            45677788888888776643322   2222 223445566664 455666666666655333322    34444433  4


Q ss_pred             HhcCChHHHHHHHHHHhhC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCCCCHHh
Q 015765          122 GQANMIDHAMQTFEEMDKY--GLRQ------------SVDALNALLLGCILSKNYEEVKRIFTEFPKVY---GIEPNSET  184 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~  184 (401)
                      .+.+.+++|.+.+..-.+.  +-.+            |...=+..+.+++..|.+.++..+++++....   ...-+..+
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~  169 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM  169 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence            5889999999988877654  2221            22223556778899999999999999997642   11246778


Q ss_pred             HHHHHHHHHh
Q 015765          185 YNKVIKSFCE  194 (401)
Q Consensus       185 ~~~l~~~~~~  194 (401)
                      |+.++-.+.+
T Consensus       170 yd~~vlmlsr  179 (549)
T PF07079_consen  170 YDRAVLMLSR  179 (549)
T ss_pred             HHHHHHHHhH
Confidence            8875555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.25  E-value=0.043  Score=45.32  Aligned_cols=61  Identities=16%  Similarity=0.263  Sum_probs=39.0

Q ss_pred             HHHHHhchhhcCCCCCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765          166 KRIFTEFPKVYGIEPNSETYNKVIKSFCE-----SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK  229 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (401)
                      ++.|....   +-+.|..+|-..+..+..     .+.++-....+..|.+.|+..|..+|+.|++.+-+
T Consensus        54 e~~F~aa~---~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK  119 (406)
T KOG3941|consen   54 EKQFEAAE---PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK  119 (406)
T ss_pred             hhhhhccC---cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence            34454443   224566666666666543     34566666777777778888888888888876644

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.19  E-value=0.22  Score=44.59  Aligned_cols=67  Identities=7%  Similarity=-0.080  Sum_probs=56.0

Q ss_pred             CCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015765          107 LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS-V---DALNALLLGCILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       107 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  175 (401)
                      .|.+...+..+..+|...|++++|+..|++.++.+  |+ .   .+|..+..+|...|+.++|++.+++..+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35557788899999999999999999999988874  44 3   35888999999999999999999998753

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.54  Score=38.29  Aligned_cols=213  Identities=12%  Similarity=0.109  Sum_probs=110.8

Q ss_pred             CCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 015765           69 PESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDA  148 (401)
Q Consensus        69 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  148 (401)
                      ++...-...|.....+|....++++|...+.+....-.  .+...|.       ....++.|.-+.+++.+.  +--...
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yE--nnrslfh-------AAKayEqaamLake~~kl--sEvvdl   93 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDL   93 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHH
Confidence            34444556788888888888999998887777652110  0011111       123345555555555543  112334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---C--CCCCHHhHHHH
Q 015765          149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK---S--IRPNATDFGLL  223 (401)
Q Consensus       149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l  223 (401)
                      |+.....|...|..+.|-..+++.-+-                 ...-+++.|+++|++....   +  ..--...+...
T Consensus        94 ~eKAs~lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~  156 (308)
T KOG1585|consen   94 YEKASELYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC  156 (308)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            555666777777777666666555321                 1223444455554443221   0  00011223334


Q ss_pred             HHHHHccCChHHHHHHHHHHHH----cCCCCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHH
Q 015765          224 LAGFYKEHKYEDVGKVLQMMEK----CGIASG-VNVYNIRIQSLCKLKRSEEAKALLDGMLSRG---IKPNLDTYKHLIH  295 (401)
Q Consensus       224 l~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~li~  295 (401)
                      -+.+.+..++++|-..+.+-..    ..--++ -..|-..|-.+.-..++..|.+.++.-.+.+   -.-+..+...|+.
T Consensus       157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~  236 (308)
T KOG1585|consen  157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT  236 (308)
T ss_pred             hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence            4556666666666554433211    100111 1234444555666678888888887644332   1224567777777


Q ss_pred             HHhcCCChHHHHHHH
Q 015765          296 GFGKEGNLEGAKKLF  310 (401)
Q Consensus       296 ~~~~~~~~~~a~~~~  310 (401)
                      +| ..|+.+++.+++
T Consensus       237 ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  237 AY-DEGDIEEIKKVL  250 (308)
T ss_pred             Hh-ccCCHHHHHHHH
Confidence            77 567777766554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.04  E-value=0.078  Score=43.88  Aligned_cols=100  Identities=17%  Similarity=0.270  Sum_probs=71.9

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC----------------ChhHH
Q 015765          143 RQSVDALNALLLGCIL-----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG----------------DSSSV  201 (401)
Q Consensus       143 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a  201 (401)
                      +.|..+|...+..+..     .+.++-.-..++.| +++|+..|..+|+.|++.+=+..                +-+-+
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~  142 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA  142 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence            4577778877777754     35677777888888 78899999999999999865432                12346


Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh-HHHHHHHHHH
Q 015765          202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKY-EDVGKVLQMM  243 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~  243 (401)
                      ++++++|...|+.||..+-..+++++.+.+-. .+..+++-.|
T Consensus       143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence            77888888888888888888888887776643 3344444444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=1.5  Score=41.81  Aligned_cols=302  Identities=13%  Similarity=0.122  Sum_probs=174.2

Q ss_pred             CCCccHhHHH-----HHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCC
Q 015765           70 ESPLDRMAFS-----IAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM--IDHAMQTFEEMDKYGL  142 (401)
Q Consensus        70 ~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~  142 (401)
                      +++.+-..|.     .+|+-+...+.+..|+++-+.+. .+.... ..++......+.+..+  -+++++..++=.....
T Consensus       427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~-~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~  504 (829)
T KOG2280|consen  427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLN-LPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL  504 (829)
T ss_pred             CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhC-Cccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence            4555554443     45677788899999999998876 333233 5678888888877643  2344444444333322


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCC---CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-------
Q 015765          143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIE---PNSETYNKVIKSFCESGDSSSVYSILAEMRRKS-------  212 (401)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------  212 (401)
                       .....|..+..-....|+.+.|..+++.=+....-.   .+..-+...+.-+.+.|+.+-...++-.+...-       
T Consensus       505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~  583 (829)
T KOG2280|consen  505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM  583 (829)
T ss_pred             -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence             344567777777778999999998876432221000   122235566667778888888777776665431       


Q ss_pred             ----CCCCHHhHHHHHH--------HHHccCChHHHHHHH--HHHHH-cCCCCCchhHHHHHHHHHhcCCHH--------
Q 015765          213 ----IRPNATDFGLLLA--------GFYKEHKYEDVGKVL--QMMEK-CGIASGVNVYNIRIQSLCKLKRSE--------  269 (401)
Q Consensus       213 ----~~~~~~~~~~ll~--------~~~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~--------  269 (401)
                          .+.....|..+++        .+...++-.++...|  +.... ..+.+-..........+.+.....        
T Consensus       584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed  663 (829)
T KOG2280|consen  584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED  663 (829)
T ss_pred             HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence                1111222222222        111112211221111  11000 001111112233334444433311        


Q ss_pred             --HHHHHHHHHHHC-CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 015765          270 --EAKALLDGMLSR-GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR  346 (401)
Q Consensus       270 --~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  346 (401)
                        +-+++.+.+... |......+.+--+.-+...|+-.+|.++-.+.+    -||-..|-.-+.+++..+++++-+++-+
T Consensus       664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk  739 (829)
T KOG2280|consen  664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK  739 (829)
T ss_pred             HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence              222233333322 222333444555666677899999999888776    6889999999999999999999888766


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       347 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      .+.      .+.-|.-.+.+|.+.|+.++|.+++.+..
T Consensus       740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~  771 (829)
T KOG2280|consen  740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG  771 (829)
T ss_pred             ccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence            443      24456667899999999999999987653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.97  E-value=1.1  Score=40.02  Aligned_cols=283  Identities=13%  Similarity=0.103  Sum_probs=122.4

Q ss_pred             HHhCCCchHHHHHHHHhhhCCCCCC---c-hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHh
Q 015765           85 LSQANHFNAISQLLEELKTRPDLRQ---N-ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL--GCIL  158 (401)
Q Consensus        85 ~~~~~~~~~a~~~~~~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~  158 (401)
                      +.+.+++.++.++|.++.......+   . +-..+.++++|.. ++.+.....+....+..  | ...|-.+..  .+.+
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK   91 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence            3456777777777777663222111   1 1122344455543 34555544444444321  2 122333322  2345


Q ss_pred             cCCHHHHHHHHHhchhhc-CCCCC------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHHhHH
Q 015765          159 SKNYEEVKRIFTEFPKVY-GIEPN------------SETYNKVIKSFCESGDSSSVYSILAEMRRK----SIRPNATDFG  221 (401)
Q Consensus       159 ~~~~~~a~~~~~~~~~~~-~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~  221 (401)
                      .+++.+|.+.+.....+. +..+.            ...=++.++++...|.+.++..+++++...    ....+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            666777766665553221 11111            111234455566667777776666665443    2335666666


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHH---cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015765          222 LLLAGFYKEHKYEDVGKVLQMMEK---CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG  298 (401)
Q Consensus       222 ~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  298 (401)
                      .++-.+.+.        .|-++.+   .++-|+   |--++-.|.+.=      ..++.---..+.|.......++....
T Consensus       172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlf  234 (549)
T PF07079_consen  172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLF  234 (549)
T ss_pred             HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHH
Confidence            554444332        2222211   112221   222222222110      00000000012333333333333322


Q ss_pred             cCC--ChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccC
Q 015765          299 KEG--NLEGAKKLFASMTNGGCEPDSY-CFFMFTYFLCQGGEYETALKVCRASMAKGWVP----HFSTMKSLVTGLASIS  371 (401)
Q Consensus       299 ~~~--~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g  371 (401)
                      -..  ...--.+++..-...-+.|+.. ....+...+.+  +.+++..+.+.+....+.+    -..+|..++....+.+
T Consensus       235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~  312 (549)
T PF07079_consen  235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV  312 (549)
T ss_pred             hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            211  1112223333333333455432 23334444433  5555555555444332111    2346677777777788


Q ss_pred             CHHHHHHHHHHHHhcCCCC
Q 015765          372 KVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       372 ~~~~a~~~~~~~~~~~~~~  390 (401)
                      +...|.+.+.-+.-..|..
T Consensus       313 ~T~~a~q~l~lL~~ldp~~  331 (549)
T PF07079_consen  313 QTEEAKQYLALLKILDPRI  331 (549)
T ss_pred             hHHHHHHHHHHHHhcCCcc
Confidence            8888887777665544443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.96  E-value=0.52  Score=36.17  Aligned_cols=51  Identities=18%  Similarity=0.195  Sum_probs=21.4

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765          123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      ..|.++.+....+-+...+-+.....-..|.-+-.+.|++.+|.+.|.++.
T Consensus       144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            444444444444444333322222333334334444444444444444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=1.1  Score=39.60  Aligned_cols=251  Identities=10%  Similarity=0.001  Sum_probs=145.7

Q ss_pred             ChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHH
Q 015765           54 NPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQ  132 (401)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  132 (401)
                      ++..|+..+..+..-  .+.+..-|..-+..+...|++++|.--.+.-. ..++++.   .....-.++...++..+|..
T Consensus        64 ~Y~nal~~yt~Ai~~--~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k---~~~r~~~c~~a~~~~i~A~~  138 (486)
T KOG0550|consen   64 TYGNALKNYTFAIDM--CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK---GQLREGQCHLALSDLIEAEE  138 (486)
T ss_pred             hHHHHHHHHHHHHHh--CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc---cccchhhhhhhhHHHHHHHH
Confidence            556677766665433  33356667777777777777777766554443 1222211   23333344444444444443


Q ss_pred             HHHH---------------HhhCC-CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH--HHH
Q 015765          133 TFEE---------------MDKYG-LRQSVDALNAL-LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK--SFC  193 (401)
Q Consensus       133 ~~~~---------------~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~  193 (401)
                      .++.               ..... -+|....|..+ ..++...|+.++|.+.--...+..  ..+.  +...++  ++.
T Consensus       139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n~--~al~vrg~~~y  214 (486)
T KOG0550|consen  139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATNA--EALYVRGLCLY  214 (486)
T ss_pred             HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cchh--HHHHhcccccc
Confidence            3331               11111 12333444444 345667788888888777765432  2222  233333  334


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHh-------------HHHHHHHHHccCChHHHHHHHHHHHHcC---CCCCchhHHH
Q 015765          194 ESGDSSSVYSILAEMRRKSIRPNATD-------------FGLLLAGFYKEHKYEDVGKVLQMMEKCG---IASGVNVYNI  257 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~  257 (401)
                      -.++.+.+...|++.+..+  |+...             +..-.+-..+.|.+..|.+.+.+.+...   ..++...|-.
T Consensus       215 y~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n  292 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN  292 (486)
T ss_pred             cccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence            4577888888888876643  33222             1112234568899999999999887643   3445566767


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGG  317 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  317 (401)
                      ...+..+.|+.++|+.--++.....  +. ...|..-..++...+++++|.+-|+...+..
T Consensus       293 ra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  293 RALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             hHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7777788899999998888776642  11 1223333445666788999999888877653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=1.7  Score=41.61  Aligned_cols=154  Identities=10%  Similarity=0.084  Sum_probs=88.2

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      |+.+.+.+.+++|+++.+..........-.......|..+.-.|++++|-...-.|..    .+..-|.--+.-+...++
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~  438 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ  438 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence            6777888888888888877552222111256677778888888888888888888873    355666666666666665


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh---------CCCC-------CCHHhHHHHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR---------KSIR-------PNATDFGLLLA  225 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~-------~~~~~~~~ll~  225 (401)
                      ......+   ++.. ....+...|..++..+.. .+...-.++..+...         ...+       -+...-..|..
T Consensus       439 l~~Ia~~---lPt~-~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~  513 (846)
T KOG2066|consen  439 LTDIAPY---LPTG-PPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAH  513 (846)
T ss_pred             cchhhcc---CCCC-CcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence            5443333   3221 112344556666666665 222222222211000         0001       11223334777


Q ss_pred             HHHccCChHHHHHHHHHHH
Q 015765          226 GFYKEHKYEDVGKVLQMME  244 (401)
Q Consensus       226 ~~~~~~~~~~a~~~~~~~~  244 (401)
                      .|...+++.+|.+++-...
T Consensus       514 LYl~d~~Y~~Al~~ylklk  532 (846)
T KOG2066|consen  514 LYLYDNKYEKALPIYLKLQ  532 (846)
T ss_pred             HHHHccChHHHHHHHHhcc
Confidence            7788888888887765553

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.85  E-value=0.29  Score=35.57  Aligned_cols=54  Identities=7%  Similarity=0.034  Sum_probs=23.9

Q ss_pred             HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 015765           84 KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK  139 (401)
Q Consensus        84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  139 (401)
                      +++..|+++.|++.|.+....  .|.+.+.|+.-..++.-.|+.++|++-+++..+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            334444555555544444411  122233444444444444555555444444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.82  E-value=1.1  Score=38.81  Aligned_cols=166  Identities=11%  Similarity=-0.000  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CCHHhH
Q 015765          149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---SETYNKVIKSFCESGDSSSVYSILAEMRRKSIR-----PNATDF  220 (401)
Q Consensus       149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~  220 (401)
                      |..+.+++-+.-++.+++.+-+.-....|..|.   -...-++..++...+.++++++.|+...+....     ....++
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            333444444444445555444333222222221   122334555555566677777777665442111     122356


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHH----cCCCCCchhHHH-----HHHHHHhcCCHHHHHHHHHHHHH----CCCCcC-
Q 015765          221 GLLLAGFYKEHKYEDVGKVLQMMEK----CGIASGVNVYNI-----RIQSLCKLKRSEEAKALLDGMLS----RGIKPN-  286 (401)
Q Consensus       221 ~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~----~~~~p~-  286 (401)
                      ..+...|.+..|++++.-+..+..+    .++..-..-|..     +.-++-..|....|.+.-++..+    .|-.+. 
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            6666677777777776655544422    222211112222     22344455666666666555433    232211 


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~  314 (401)
                      ......+...|...|+.+.|+.-|++..
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            2233455666777777777776666543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.23  Score=43.45  Aligned_cols=125  Identities=9%  Similarity=0.015  Sum_probs=66.2

Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcC----CC---------CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYG----IE---------PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDF  220 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~----~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  220 (401)
                      +.|.+.|++..|..-|++......    ..         .-..+++.+..+|.+.+++..|++..++.+..+ ++|....
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            456677777777777666533211    11         112345556666666666666666666666553 4455555


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 015765          221 GLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE-EAKALLDGMLS  280 (401)
Q Consensus       221 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~  280 (401)
                      ---..++...|+++.|...|+++.+.. +.|..+-+.++.+--+..... ...++|..|..
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555666666666666666666666642 223333333333333332222 23445555543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.75  E-value=0.21  Score=44.69  Aligned_cols=71  Identities=6%  Similarity=-0.123  Sum_probs=58.4

Q ss_pred             CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015765           70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY  140 (401)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  140 (401)
                      ..|.+...|+.+..+|.+.|++++|+..|++.... |+...-...|..+..+|...|++++|++.+++..+.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34557789999999999999999999999997743 332221145899999999999999999999999875

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=1.2  Score=38.26  Aligned_cols=116  Identities=7%  Similarity=-0.071  Sum_probs=60.5

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH----HHHHHHHHhcCChh
Q 015765          124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY----NKVIKSFCESGDSS  199 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~  199 (401)
                      .|++.+|-..++++++.- +.|...++..=.+|.-.|+.+.....++++...+  .+|...|    ....-++...|-++
T Consensus       116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccch
Confidence            455555555555555432 4455555555556666666666655555554432  2332222    22233334556666


Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      +|.+.-++..+.+ +.|....+.+...+--.|++.++.++..+-
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            6666665555442 334555555555555566666665555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.69  E-value=1.2  Score=38.17  Aligned_cols=164  Identities=13%  Similarity=0.129  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015765          184 TYNKVIKSFCESGDSS---SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ  260 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  260 (401)
                      +...++.+|...+..+   +|.++++.+.+. .+-....+..-+..+.+.++.+.+.+++..|...- .-....+..++.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            4566777777766544   455566666443 22235556566677777888888888888887762 223344555555


Q ss_pred             HHHh--cCCHHHHHHHHHHHHHCCCCcCHH-HHHH-HH---HHHhcCCC------hHHHHHHHHHHHhC-CCCCCHhhHH
Q 015765          261 SLCK--LKRSEEAKALLDGMLSRGIKPNLD-TYKH-LI---HGFGKEGN------LEGAKKLFASMTNG-GCEPDSYCFF  326 (401)
Q Consensus       261 ~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~-li---~~~~~~~~------~~~a~~~~~~m~~~-~~~~~~~~~~  326 (401)
                      .+-.  ......+...++.+....+.|... .... ++   -...+.++      .+...++++...+. +.+.+..+-.
T Consensus       164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~  243 (278)
T PF08631_consen  164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS  243 (278)
T ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            5422  233455666666665554554443 1111 11   11122211      44444555543332 2233443333


Q ss_pred             HH-------HHHHHccCCHHHHHHHHHHHH
Q 015765          327 MF-------TYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       327 ~l-------i~~~~~~g~~~~a~~~~~~~~  349 (401)
                      .+       ...+.+.++++.|.+.++-..
T Consensus       244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            32       234567889999999987543

It is also involved in sporulation [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.3  Score=42.75  Aligned_cols=96  Identities=13%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHH
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS-LVTG  366 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~  366 (401)
                      .++..+..+|.+.+++..|++.....+..+ ++|....-.-..+|...|+++.|...|+++.+..  |+...... |+..
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence            345556666777777777777777777664 4556666666677777777777777777777653  43333333 3333


Q ss_pred             HHccCC-HHHHHHHHHHHHhc
Q 015765          367 LASISK-VAEANELIGLMKKR  386 (401)
Q Consensus       367 ~~~~g~-~~~a~~~~~~~~~~  386 (401)
                      --+..+ .+...++|..|-.+
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            333333 23335666666655

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.66  E-value=2.8  Score=42.28  Aligned_cols=52  Identities=17%  Similarity=0.153  Sum_probs=22.3

Q ss_pred             HHHHhcCCChHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSY--CFFMFTYFLCQGGEYETALKVCRAS  348 (401)
Q Consensus       294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~  348 (401)
                      +.+|..+|++.+|+.+..++...   -+..  +-..|+.-+...++.-+|-++..+.
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            34444555555555554444311   1111  1133444444555555555544443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.49  Score=40.44  Aligned_cols=155  Identities=11%  Similarity=0.099  Sum_probs=109.7

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhH----HHHHHHHHhcCCH
Q 015765          193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY----NIRIQSLCKLKRS  268 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~  268 (401)
                      ...|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..++...|    ..+..++..+|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3467888888889998876 5778888888888999999998888888888654 23444333    3444556678999


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 015765          269 EEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---GCEPDSYCFFMFTYFLCQGGEYETALKVC  345 (401)
Q Consensus       269 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~  345 (401)
                      ++|++.-++..+.+ +.|.-.-.+....+...|+..++.++..+-...   +.-.-...|-...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999888877764 336666677777888889999998887654432   11111233444455566778999999999


Q ss_pred             HHHHH
Q 015765          346 RASMA  350 (401)
Q Consensus       346 ~~~~~  350 (401)
                      ++-+-
T Consensus       271 D~ei~  275 (491)
T KOG2610|consen  271 DREIW  275 (491)
T ss_pred             HHHHH
Confidence            86433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.83  Score=38.44  Aligned_cols=151  Identities=12%  Similarity=0.065  Sum_probs=100.8

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      .......|++.+|..+|.......  +.+......++.+|...|+.+.|..++..+....-.........-|..+.+...
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence            455678899999999998887332  222456778889999999999999999998764322222222233455555555


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHccCChHHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS-IRPNATDFGLLLAGFYKEHKYEDVG  237 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~  237 (401)
                      ..+..++-.+.-..   +-|...-..+...+...|+.+.|++.+-.+.+.. ---|...-..++..+.-.|.-+.+.
T Consensus       219 ~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         219 TPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             CCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence            55555555555321   3466677778888999999999998887775542 2335666777777777777444433

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.58  E-value=0.7  Score=34.75  Aligned_cols=85  Identities=16%  Similarity=0.241  Sum_probs=42.5

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015765           79 SIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL  158 (401)
Q Consensus        79 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  158 (401)
                      ..++..+...+....+..+++.+...+  +.+...++.++..|++.+ .....+.+..      ..+......++..|.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence            345555555566666666666665332  133456666666666542 2333333331      0112223335555555


Q ss_pred             cCCHHHHHHHHHhc
Q 015765          159 SKNYEEVKRIFTEF  172 (401)
Q Consensus       159 ~~~~~~a~~~~~~~  172 (401)
                      .+.++++.-++.++
T Consensus        82 ~~l~~~~~~l~~k~   95 (140)
T smart00299       82 AKLYEEAVELYKKD   95 (140)
T ss_pred             cCcHHHHHHHHHhh
Confidence            56666666666555

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=95.50  E-value=0.11  Score=35.65  Aligned_cols=57  Identities=9%  Similarity=0.119  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      +..+-++.+....+.|++.+..+.+++|.+.+++..|.++++.++.+..+....|..
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~   84 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY   84 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence            344444444444555555555555555555555555555555555553333334433

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=95.43  E-value=0.097  Score=35.56  Aligned_cols=45  Identities=7%  Similarity=0.018  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  349 (401)
                      ++.+-++.+....+.|++....+.+++|-+.+++..|.++++-.+
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444444444444555555555555555555555555555555443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.38  E-value=0.63  Score=43.42  Aligned_cols=184  Identities=9%  Similarity=0.052  Sum_probs=102.8

Q ss_pred             hhchhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh--hCCCCCCchh
Q 015765           35 ALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK--TRPDLRQNER  112 (401)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~  112 (401)
                      ...-.+++.++.+++.+.|...+|+++|..+.--           -..+-+...|+.++-..+.++-.  ......|   
T Consensus       641 ~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-----------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---  706 (1081)
T KOG1538|consen  641 VFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-----------DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---  706 (1081)
T ss_pred             HHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-----------HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---
Confidence            3445567888888888888888888877655211           12344555565555444443321  0111111   


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHH------HHhhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFE------EMDKYGL---RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE  183 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  183 (401)
                        ......+...|+.++|..+.-      -+.+-+-   ..+..+...+..-+.+...+..|-++|.+|-+.        
T Consensus       707 --kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------  776 (1081)
T KOG1538|consen  707 --KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------  776 (1081)
T ss_pred             --HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence              122333444555555544321      1111111   223445555555556667777888888887432        


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-----------hHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT-----------DFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                        ..+++.....++|++|+.+-+...+.  .||..           -|.-.-.+|.+.|+-.+|.++++++...
T Consensus       777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence              35667777888888888887775442  33332           2333446677778888888887777543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.25  E-value=1.3  Score=36.00  Aligned_cols=225  Identities=17%  Similarity=0.136  Sum_probs=108.9

Q ss_pred             cCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015765          124 ANMIDHAMQTFEEMDKYGLRQ-SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY  202 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  202 (401)
                      .+....+...+.......... ....+......+...+++..+...+...............+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            345555555555555443111 2455555666666666676666666665421011333444555555556666666666


Q ss_pred             HHHHHHHhCCCCCCHHhHHHHHH-HHHccCChHHHHHHHHHHHHcCC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          203 SILAEMRRKSIRPNATDFGLLLA-GFYKEHKYEDVGKVLQMMEKCGI--ASGVNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      +.+.........+ ......... .+...|+++.+...+.+......  ......+......+...++.+.+...+....
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            6666665543222 111222222 55666666666666666544211  0112222233333444556666666666555


Q ss_pred             HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      ..........+..+...+...++++.+...+.......  |+ ...+..+...+...+..+.+...+.+....
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            54211123445555555555555666666665555432  22 222333333333444555555555555443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=1.7  Score=36.70  Aligned_cols=144  Identities=8%  Similarity=0.004  Sum_probs=76.1

Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      .....|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..++.+.. .........-+..+.+.....
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence            3456677777777777766654 23344555667777777777777777777754310 001111112334444444444


Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHHHHHHHhcCC
Q 015765          200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIRIQSLCKLKR  267 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~  267 (401)
                      +...+-.+.-..  +-|...-..+...+...|+.+.|.+.+-.+...+ -..|...-..++..+.-.|.
T Consensus       221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence            444444444332  2245555556666666677777666554443321 12244455555555555553

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=95.01  E-value=0.86  Score=37.96  Aligned_cols=132  Identities=11%  Similarity=0.104  Sum_probs=87.0

Q ss_pred             chhHHHHHHHHHHhcCCChhHHHHHhhhccCCC------CCCc------cHhHHHHHHHHHHhCCCchHHHHHHHHhhhC
Q 015765           37 TIKEKKRATIARLKSESNPFRILDICCGASLAP------ESPL------DRMAFSIAVSKLSQANHFNAISQLLEELKTR  104 (401)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  104 (401)
                      +....+..+.+.+.-..|+..|++.++...+.=      +.+.      -......-|.+++..++|.++....-+-...
T Consensus        33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~  112 (309)
T PF07163_consen   33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV  112 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence            344678888888999999999998877542110      0110      1112334478888899999888866555544


Q ss_pred             CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHH
Q 015765          105 PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI-----LSKNYEEVKRIF  169 (401)
Q Consensus       105 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~  169 (401)
                      +..-| ..+...-|-.|.+.+.+..+.++-..-...--..+...|..++..|.     -.|.+++|+++.
T Consensus       113 pEklP-pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  113 PEKLP-PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             cccCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            54444 56777778888888988888888776665322333344666655554     468888888877

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.00  E-value=2.4  Score=37.63  Aligned_cols=53  Identities=13%  Similarity=0.060  Sum_probs=31.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  174 (401)
                      +.+.-+.|+++...+........  .++...+.++...  +.++.+++....++...
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            45566778888755555555432  2344444444433  67777777777776643

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.99  E-value=0.95  Score=33.00  Aligned_cols=56  Identities=16%  Similarity=0.095  Sum_probs=30.4

Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY  176 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  176 (401)
                      +.+..|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+++..+-.
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa  107 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELA  107 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3445555666666655555442 3445555555555555555555555555554443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.99  E-value=0.92  Score=39.28  Aligned_cols=232  Identities=6%  Similarity=-0.050  Sum_probs=136.7

Q ss_pred             HHhcCCChhHHHHHhhhccCCCC-CCccHhHHHHHHHHHHhCCCchHHHHHHH----HhhhCCCCCCchhHHHHHHHHHH
Q 015765           48 RLKSESNPFRILDICCGASLAPE-SPLDRMAFSIAVSKLSQANHFNAISQLLE----ELKTRPDLRQNERFHVHSIVLYG  122 (401)
Q Consensus        48 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~li~~~~  122 (401)
                      .+-..++.++|+..+.....+-+ ...-..+|..+..+.++.|.+++++..--    -.....+...--..|..+.+++-
T Consensus        15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e   94 (518)
T KOG1941|consen   15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE   94 (518)
T ss_pred             hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677888877665442211 11223477888888899998888665422    21111111111234556666666


Q ss_pred             hcCChHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC----CHHhHHHHHHHHHh
Q 015765          123 QANMIDHAMQTFEEMDKY-GLRQ---SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP----NSETYNKVIKSFCE  194 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~  194 (401)
                      +..++.+++.+-..-... |..|   ......++..+....+.++++++.|+...+-..-..    ....+..|...|.+
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~  174 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ  174 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence            666777777766554331 1111   123444566777778889999999887754322222    23468889999999


Q ss_pred             cCChhHHHHHHHHHHh----CCCCCCHHhHHH-----HHHHHHccCChHHHHHHHHHHHH----cCCCC-CchhHHHHHH
Q 015765          195 SGDSSSVYSILAEMRR----KSIRPNATDFGL-----LLAGFYKEHKYEDVGKVLQMMEK----CGIAS-GVNVYNIRIQ  260 (401)
Q Consensus       195 ~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~ll~  260 (401)
                      ..|+++|.-+..+..+    .++..=..-|..     +.-++...|+...|.+.-++..+    .|-.+ .......+.+
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            9999998877665533    222211112222     22345667777777777666543    33111 1233455677


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 015765          261 SLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~  279 (401)
                      .|-..|+.+.|+.-|+...
T Consensus       255 IyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHhcccHhHHHHHHHHHH
Confidence            8888999999888887654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.96  E-value=2.1  Score=40.70  Aligned_cols=178  Identities=15%  Similarity=0.090  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHH----HHH-HHccCChHHHHHHHHHHHH-------cCCCCCchhHHHHHHHHHhc
Q 015765          198 SSSVYSILAEMRRKSIRPNATDFGLL----LAG-FYKEHKYEDVGKVLQMMEK-------CGIASGVNVYNIRIQSLCKL  265 (401)
Q Consensus       198 ~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~  265 (401)
                      ...|.++++...+.|.   ...-..+    ..+ +....+.+.|...|+.+.+       .|   ......-+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            3567777777766652   2221111    222 4455677777777777755       44   223455555666553


Q ss_pred             C-----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc-CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCC
Q 015765          266 K-----RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK-EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC--QGGE  337 (401)
Q Consensus       266 ~-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~  337 (401)
                      .     +.+.|..++....+.|. |+...+-..+..... ..+...|.++|....+.|. +....+..+.....  ...+
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCC
Confidence            2     56667777777777763 343333222222222 2456778888887777662 22222222221111  2346


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          338 YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      .+.|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+.+
T Consensus       380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE  425 (552)
T ss_pred             HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence            777888887777776 3332222333333333 555555555444443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=0.17  Score=42.60  Aligned_cols=106  Identities=16%  Similarity=0.136  Sum_probs=77.5

Q ss_pred             CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 015765           70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN-ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDA  148 (401)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  148 (401)
                      +.+.+..+-..++.......+++.++..+-++...+....- ..+-...++.+. .-++++++.++..-+..|+-||-.+
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence            34445556666777777788899999998888854432110 111223344433 3477799999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhchhhc
Q 015765          149 LNALLLGCILSKNYEEVKRIFTEFPKVY  176 (401)
Q Consensus       149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  176 (401)
                      ++.+|+.+.+.+++.+|.++...|..+.
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999988887654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.94  E-value=0.1  Score=30.00  Aligned_cols=27  Identities=11%  Similarity=0.020  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKY  140 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~  140 (401)
                      +..+...|.+.|++++|.++|++.++.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444455555555555555555555554

>PRK11906 transcriptional regulator; Provisional

Probab=94.91  E-value=1.4  Score=39.79  Aligned_cols=117  Identities=9%  Similarity=0.016  Sum_probs=58.4

Q ss_pred             ChhHHHHHhhhccCCCCCCc-cHhHHHHHHHHHHh---------CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh
Q 015765           54 NPFRILDICCGASLAPESPL-DRMAFSIAVSKLSQ---------ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ  123 (401)
Q Consensus        54 ~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  123 (401)
                      +.++|+.+|..+.......| ....|..+..++..         .....+|.++.+......  +.|......+..+...
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence            44567777777762222222 23344333332211         122233444444444322  3334445555555555


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765          124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      .++++.|..+|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus       351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            566666777776666654 3334455544445555666666666666644

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.85  E-value=5  Score=40.62  Aligned_cols=115  Identities=14%  Similarity=0.148  Sum_probs=70.1

Q ss_pred             CCCHHhHHH----HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--
Q 015765          214 RPNATDFGL----LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL--  287 (401)
Q Consensus       214 ~~~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--  287 (401)
                      .|+...+..    ..+.+...+.+++|.-.|+..-+         ..-.+.+|..+|++.+|..+-.++....   +.  
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~  999 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELV  999 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHH
Confidence            345444443    33444555667777666655422         2235677778888888888877664321   22  


Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRAS  348 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  348 (401)
                      .+-..|+.-+...+++-+|-++..+....        ....+..|++...+++|.++....
T Consensus      1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence            12256777778888888888888776642        233455566677777777766543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.81  E-value=2.4  Score=36.58  Aligned_cols=133  Identities=8%  Similarity=0.118  Sum_probs=75.2

Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc--cCC----hHHHHHHHHHHHHcCC---CCCchhHHHHHHHHHhcCC-
Q 015765          198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYK--EHK----YEDVGKVLQMMEKCGI---ASGVNVYNIRIQSLCKLKR-  267 (401)
Q Consensus       198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~-  267 (401)
                      +++...+++.|.+.|+.-+..+|-+..-....  ..+    ...+..+++.|.+...   .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34566677778888877777666553333222  222    4467778888877532   1233444444433  3333 


Q ss_pred             ---HHHHHHHHHHHHHCCCCcC-H-HHHHHHHHHHhcCCC--hHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765          268 ---SEEAKALLDGMLSRGIKPN-L-DTYKHLIHGFGKEGN--LEGAKKLFASMTNGGCEPDSYCFFMFTYFL  332 (401)
Q Consensus       268 ---~~~a~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  332 (401)
                         .+.++.+|+.+.+.|+..+ . .....++..+.....  ..++.++++.+.+.|+++....|..+.-..
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa  227 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA  227 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence               3456777777777665443 2 223333332222222  346778888888888888777776654443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.54  E-value=0.13  Score=27.40  Aligned_cols=33  Identities=15%  Similarity=0.041  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          358 STMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      ..+..+...+...|++++|++.+++..+..|.|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            345666777777788888888777777766643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=2.2  Score=34.94  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=45.6

Q ss_pred             CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh
Q 015765          105 PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET  184 (401)
Q Consensus       105 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  184 (401)
                      ++...-...|.....+|....++++|..-+.+..+. ...+...|.       ....++.|.-+.+++.+-   +--...
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl---sEvvdl   93 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL---SEVVDL   93 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh---HHHHHH
Confidence            333333455666666666666676666655555432 122222222       123345555555555321   111223


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHH
Q 015765          185 YNKVIKSFCESGDSSSVYSILAEM  208 (401)
Q Consensus       185 ~~~l~~~~~~~~~~~~a~~~~~~~  208 (401)
                      |+--...|...|..+.|-..+++.
T Consensus        94 ~eKAs~lY~E~GspdtAAmaleKA  117 (308)
T KOG1585|consen   94 YEKASELYVECGSPDTAAMALEKA  117 (308)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHH
Confidence            455555666666666655555554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.46  E-value=0.53  Score=39.70  Aligned_cols=80  Identities=14%  Similarity=0.201  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHhH
Q 015765          146 VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR-----KSIRPNATDF  220 (401)
Q Consensus       146 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  220 (401)
                      ..++..++..+...|+.+.+...++++....  +.+...|..+|.+|.+.|+...|+..|+.+.+     .|+.|...+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            3456667777777788888888877776543  56777788888888888888888877777644     4777777776


Q ss_pred             HHHHHHH
Q 015765          221 GLLLAGF  227 (401)
Q Consensus       221 ~~ll~~~  227 (401)
                      .......
T Consensus       231 ~~y~~~~  237 (280)
T COG3629         231 ALYEEIL  237 (280)
T ss_pred             HHHHHHh
Confidence            6666653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.46  E-value=0.63  Score=39.27  Aligned_cols=78  Identities=12%  Similarity=0.209  Sum_probs=50.1

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh-----CCCCCCHhhHH
Q 015765          252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN-----GGCEPDSYCFF  326 (401)
Q Consensus       252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~  326 (401)
                      ..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            4456666677777777777777777776664 23666777777777777777777777766654     25555554444


Q ss_pred             HHHH
Q 015765          327 MFTY  330 (401)
Q Consensus       327 ~li~  330 (401)
                      ....
T Consensus       232 ~y~~  235 (280)
T COG3629         232 LYEE  235 (280)
T ss_pred             HHHH
Confidence            4433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.43  E-value=3.9  Score=37.34  Aligned_cols=60  Identities=15%  Similarity=0.007  Sum_probs=36.2

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          291 KHLIHGFGKEGNLEGAKKLFASMTNGGCE-PDSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       291 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      ..+..++.+.|+.++|.+.+++|.+..-. -+......|+.++...+.+.++..++.+-.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            34555556667777777777777654211 1233455667777777777777777766543

The molecular function of this protein is uncertain.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.26  E-value=1.8  Score=32.97  Aligned_cols=49  Identities=14%  Similarity=0.182  Sum_probs=21.2

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHhch
Q 015765          123 QANMIDHAMQTFEEMDKYGLRQSVDALN-ALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      +.++.+++..+++.+.-.  .|...... .-...++..|+|.+|..+|+++.
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            444555555555554433  22222111 11233444555555555555553

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=0.94  Score=38.40  Aligned_cols=100  Identities=16%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             CCHHhHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 015765          215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC---GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK  291 (401)
Q Consensus       215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~  291 (401)
                      .+..+...++..-....+++.++..+-++...   ...++... .++++.+. .-++++++.++..=.+-|+-||..+++
T Consensus        62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c  139 (418)
T KOG4570|consen   62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC  139 (418)
T ss_pred             cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence            34444444554444455566666555555332   11121111 11222222 234556666665555666666666666


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          292 HLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       292 ~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                      .+|..+.+.+++.+|.++...|...
T Consensus       140 ~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  140 LLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHH
Confidence            6666666666666666665555543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.11  E-value=0.099  Score=27.59  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=23.6

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          360 MKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      +-.+..++.+.|++++|.+.|+++.+.+|.+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            3456677778888888888888888887753

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.99  E-value=1.6  Score=34.43  Aligned_cols=62  Identities=6%  Similarity=-0.007  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKTRP-DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMD  138 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  138 (401)
                      .+..+.+.|.+.|+.+.|.+.|..+.... ....-...+-.+|+.....+++..+...+.+..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45556666666666666666666655221 111112334455555556666666665555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.93  E-value=2.3  Score=38.76  Aligned_cols=156  Identities=15%  Similarity=0.159  Sum_probs=87.9

Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH
Q 015765          227 FYKEHKYEDVGKVLQMMEKCGIASGV-NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG  305 (401)
Q Consensus       227 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  305 (401)
                      .-+..+...-.+.-++..+.  .|+- ..|..  -+--....+.++++++++..+.|-    ..+..-- .....|.   
T Consensus       178 AWRERnp~aRIkaA~eALei--~pdCAdAYIL--LAEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~g~---  245 (539)
T PF04184_consen  178 AWRERNPQARIKAAKEALEI--NPDCADAYIL--LAEEEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHHGH---  245 (539)
T ss_pred             HHhcCCHHHHHHHHHHHHHh--hhhhhHHHhh--cccccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhcccc---
Confidence            33444555555555555443  2332 22222  222334567888888888776531    1111000 0001111   


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG-WVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       306 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                         .++........|-..+=..+..++.+.|+.++|.+.+++|.+.. ...+..+...|+.++...+.+.++..++.+..
T Consensus       246 ---~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  246 ---FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             ---hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence               11112222222323333567778889999999999999998753 22345577889999999999999999999986


Q ss_pred             hc-CCCCc-ccchhc
Q 015765          385 KR-FPKSG-DMWNAA  397 (401)
Q Consensus       385 ~~-~~~~~-~~~~~l  397 (401)
                      +. .|+.. ..|++.
T Consensus       323 Di~lpkSAti~YTaA  337 (539)
T PF04184_consen  323 DISLPKSATICYTAA  337 (539)
T ss_pred             cccCCchHHHHHHHH
Confidence            55 33332 345543

The molecular function of this protein is uncertain.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.85  E-value=2.2  Score=33.55  Aligned_cols=98  Identities=11%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH--
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN--  186 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--  186 (401)
                      ...+..+...|.+.|+.+.|.+.|.++.+....+.  ...+-.+|......+++..+.....+.........|...-+  
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            45566777888888888888888888877543332  34456677777788888887777776633211111111111  


Q ss_pred             HHHH--HHHhcCChhHHHHHHHHH
Q 015765          187 KVIK--SFCESGDSSSVYSILAEM  208 (401)
Q Consensus       187 ~l~~--~~~~~~~~~~a~~~~~~~  208 (401)
                      ....  .+...+++..|-+.|-+.
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHcc
Confidence            1111  123356777776666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.78  E-value=2.5  Score=32.69  Aligned_cols=124  Identities=14%  Similarity=0.096  Sum_probs=64.1

Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH-hHHHHH--HHHHhcCC
Q 015765          122 GQANMIDHAMQTFEEMDKYGLRQSVD-ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE-TYNKVI--KSFCESGD  197 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~~~  197 (401)
                      ++.+..++|+.-|..+.+.|...-+. ...-........|+...|...|+++-.... .|-.. -..-|=  -.+...|.
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhcccc
Confidence            35566666666666666655432211 111122334556666667666766643311 12111 111111  12345566


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                      ++......+.+...+.+.-...-..|.-+-.+.|++.+|.+.|..+.+.
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            6666666666655544444444555666666677777777777666553

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=7.7  Score=37.82  Aligned_cols=123  Identities=15%  Similarity=0.089  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      .+...+..+.+..-++-|+.+-+.....+.  .-........+.+-+.|++++|.+.|-+..  +...+     ..+|.-
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~k  406 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKK  406 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHH
Confidence            345566777777777777777665432211  112233344455667899999998887655  33333     245666


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      |....++.+--.+++.+.+.|+. +...-..|+.+|.+.++.++..+..+...
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            77777888888889999988854 55566778999999998888777776653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.50  E-value=0.19  Score=26.75  Aligned_cols=30  Identities=17%  Similarity=0.040  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765          359 TMKSLVTGLASISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  388 (401)
                      +|..+...|...|++++|+..|++.++..|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            455566666666666666666666666544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.13  E-value=0.23  Score=27.01  Aligned_cols=26  Identities=12%  Similarity=-0.035  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          359 TMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       359 ~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      ++..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35677888888888888888888844

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.10  E-value=5.3  Score=34.48  Aligned_cols=130  Identities=14%  Similarity=0.178  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHhchhhcCC--CCCHHhHHHHHHHHHhcCCh
Q 015765          127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCIL--SK----NYEEVKRIFTEFPKVYGI--EPNSETYNKVIKSFCESGDS  198 (401)
Q Consensus       127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~  198 (401)
                      +++...+++.|.+.|+..+..+|-+..-....  ..    ....|..+|+.|.+.+..  .++...+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            44556678888888888777666553332222  22    245678888888665432  2344455555443  22332


Q ss_pred             ----hHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCCchhHHHH
Q 015765          199 ----SSVYSILAEMRRKSIRPNAT--DFGLLLAGFYKEHK--YEDVGKVLQMMEKCGIASGVNVYNIR  258 (401)
Q Consensus       199 ----~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l  258 (401)
                          +.+..+|+.+.+.|+..+..  ..+.++..+.....  ...+.++++.+.+.|++.....|..+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence                45566667776666544322  22222322222111  23455666666666666655555444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.76  E-value=5.5  Score=33.74  Aligned_cols=148  Identities=11%  Similarity=0.121  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh-cC-ChHHHHHHHHHHhh-CCCCCCHHHHHHHHH
Q 015765           78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ-AN-MIDHAMQTFEEMDK-YGLRQSVDALNALLL  154 (401)
Q Consensus        78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~  154 (401)
                      |..++   .+...+.+|+.+|+..........|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++.
T Consensus       134 Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~  210 (292)
T PF13929_consen  134 YWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE  210 (292)
T ss_pred             HHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence            55554   34556677888888544223356667787888777665 22 22223333343333 233677778888999


Q ss_pred             HHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCCHHhHHHHHHHHH
Q 015765          155 GCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE-----MRRKSIRPNATDFGLLLAGFY  228 (401)
Q Consensus       155 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~~~  228 (401)
                      .+++.++|..-.++++......+...|...|..+|+...+.||..-..+++++     +.+.++..+...-..+-..+.
T Consensus       211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence            99999999999999988865545566888899999999999998888888765     345567766666655555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.68  E-value=3.3  Score=31.10  Aligned_cols=49  Identities=20%  Similarity=0.175  Sum_probs=22.7

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhch
Q 015765          123 QANMIDHAMQTFEEMDKYGLRQSVDAL-NALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      ..++++++..+++.|.-.  .|+..-. ..-...++..|+|++|..+|+++.
T Consensus        22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~   71 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELL   71 (153)
T ss_pred             hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhh
Confidence            345555555555555443  2222111 111223445556666666666654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.60  E-value=3.9  Score=31.66  Aligned_cols=134  Identities=7%  Similarity=0.094  Sum_probs=66.4

Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015765          132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK  211 (401)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  211 (401)
                      +++..+.+.+++|+...+..+++.+.+.|++.....++.-     ++-+|.......+-.+.  +....+.++=-+|.++
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence            3344555666677777777777777777766555444432     22444433333222222  2233344443344332


Q ss_pred             CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765          212 SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  280 (401)
                          =...+..++..+...|++-+|.++.+.....    +......++++..+.+|...-..+|+-..+
T Consensus        88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                0113445555666667766666666554222    112234455555555655555555554444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.52  E-value=9.2  Score=35.77  Aligned_cols=326  Identities=10%  Similarity=0.038  Sum_probs=152.1

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      .+..++.-..+..+.+.+...+..+...  +|.--.-|......=.+.|..+.+.++|+.....  ++.....|......
T Consensus        47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f  122 (577)
T KOG1258|consen   47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAF  122 (577)
T ss_pred             chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHH
Confidence            3333343333333444444455555433  3333345666666666777777788888777622  23333444444333


Q ss_pred             H-HhcCChHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH---Hh
Q 015765          121 Y-GQANMIDHAMQTFEEMDKY-GLR-QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF---CE  194 (401)
Q Consensus       121 ~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~  194 (401)
                      + ...|+.+...+.|+..... |.. .....|...|.--..++++.....+|+++.+-    | ...++....-|   .+
T Consensus       123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~~~l~  197 (577)
T KOG1258|consen  123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFKQLLN  197 (577)
T ss_pred             HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHHHHHh
Confidence            3 3556777777777776552 211 13345666666666677777777777776531    1 11122111111   11


Q ss_pred             c------CChhHHHHHHHHHHh--------------------CCCCCCHHh--HHHHHHHH-------HccCChHHHHHH
Q 015765          195 S------GDSSSVYSILAEMRR--------------------KSIRPNATD--FGLLLAGF-------YKEHKYEDVGKV  239 (401)
Q Consensus       195 ~------~~~~~a~~~~~~~~~--------------------~~~~~~~~~--~~~ll~~~-------~~~~~~~~a~~~  239 (401)
                      .      ...+++.++-.....                    .+.+.+..+  .+.+-..+       ............
T Consensus       198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~  277 (577)
T KOG1258|consen  198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG  277 (577)
T ss_pred             cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence            1      112222222111110                    000001000  00111100       011111111111


Q ss_pred             HHHHHHc---CC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015765          240 LQMMEKC---GI----ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS  312 (401)
Q Consensus       240 ~~~~~~~---~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  312 (401)
                      ++.-...   .+    .++..+|+..+.--...|+.+.+.-+|++..-. +..-...|-..+......|+.+-|..++..
T Consensus       278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~  356 (577)
T KOG1258|consen  278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLAR  356 (577)
T ss_pred             hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence            1111111   01    123456777777777788888888887776532 111233444445544555777777777766


Q ss_pred             HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015765          313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN  377 (401)
Q Consensus       313 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  377 (401)
                      ..+--++-.+.+--.-....-..|+++.|..+++...+.- +--+..-..-+....+.|..+.+.
T Consensus       357 ~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  357 ACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             hhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence            5554322222222222222334678888888888777653 222233334445555666666666

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.32  E-value=0.38  Score=26.16  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=18.3

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          324 CFFMFTYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       324 ~~~~li~~~~~~g~~~~a~~~~~~~~  349 (401)
                      +|..|...|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35667777888888888888887744

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.25  E-value=4.3  Score=31.41  Aligned_cols=23  Identities=13%  Similarity=0.226  Sum_probs=9.6

Q ss_pred             hCCCCCCHHhHHHHHHHHHccCC
Q 015765          210 RKSIRPNATDFGLLLAGFYKEHK  232 (401)
Q Consensus       210 ~~~~~~~~~~~~~ll~~~~~~~~  232 (401)
                      +.+++|+...+..+++.+.+.|+
T Consensus        22 ~~~i~~~~~L~~lli~lLi~~~~   44 (167)
T PF07035_consen   22 QHNIPVQHELYELLIDLLIRNGQ   44 (167)
T ss_pred             HcCCCCCHHHHHHHHHHHHHcCC
Confidence            33344444444444444444443

>PRK11906 transcriptional regulator; Provisional

Probab=92.13  E-value=9.1  Score=34.84  Aligned_cols=162  Identities=7%  Similarity=-0.038  Sum_probs=99.2

Q ss_pred             hHH--HHHHHHHHhC-----CCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHh---------cCChHHHHHHHHHHh
Q 015765           76 MAF--SIAVSKLSQA-----NHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQ---------ANMIDHAMQTFEEMD  138 (401)
Q Consensus        76 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~  138 (401)
                      ..|  ...+.+..+.     ...+.|..+|.+.... +..|.....|..+..++..         .....+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  5556555552     2345688889888722 2223334455555443331         234566777777788


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC
Q 015765          139 KYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS-ETYNKVIKSFCESGDSSSVYSILAEMRRKS-IRPN  216 (401)
Q Consensus       139 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~  216 (401)
                      +.+ +.|......+..+..-.++.+.|..+|++...-   .||. .+|....-.+.-.|+.++|.+.+++..+.. ...-
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            877 668888888877777788899999999988643   5553 345444455556789999999998865432 2222


Q ss_pred             HHhHHHHHHHHHccCChHHHHHHHHH
Q 015765          217 ATDFGLLLAGFYKEHKYEDVGKVLQM  242 (401)
Q Consensus       217 ~~~~~~ll~~~~~~~~~~~a~~~~~~  242 (401)
                      .......++.|+.. ..+.+.+++-+
T Consensus       408 ~~~~~~~~~~~~~~-~~~~~~~~~~~  432 (458)
T PRK11906        408 AVVIKECVDMYVPN-PLKNNIKLYYK  432 (458)
T ss_pred             HHHHHHHHHHHcCC-chhhhHHHHhh
Confidence            33344445555554 45666666543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.10  E-value=3  Score=33.16  Aligned_cols=74  Identities=9%  Similarity=0.037  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 015765          303 LEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK---GWVPHFSTMKSLVTGLASISKVAEAN  377 (401)
Q Consensus       303 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~  377 (401)
                      -+.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+..+.   +-.+|+..+..|+..|.+.|+++.|.
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3456666666666554444444455444444 55666777766666554   22566777777777777777776664

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.04  E-value=9.8  Score=34.99  Aligned_cols=180  Identities=13%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             CCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHH
Q 015765          107 LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN  186 (401)
Q Consensus       107 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  186 (401)
                      .+.|.....+++..++......-+..+..+|...|  -+...+..++.+|... ..+.-..+|+++.+-   --|.....
T Consensus        62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~---dfnDvv~~  135 (711)
T COG1747          62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY---DFNDVVIG  135 (711)
T ss_pred             ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh---cchhHHHH
Confidence            34455677888888888888888889999998876  3667788888888887 566777888877543   33444444


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CHHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCchhHHHHHH
Q 015765          187 KVIKSFCESGDSSSVYSILAEMRRKSIRP-----NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASGVNVYNIRIQ  260 (401)
Q Consensus       187 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~  260 (401)
                      --+..+...++.+.+..+|.+...+-++.     =...|..+...  -..+.+....+...+... |...-...+.-+-.
T Consensus       136 ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~  213 (711)
T COG1747         136 RELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK  213 (711)
T ss_pred             HHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            44444444478888888888776542211     11245544432  234677777777777543 33334455566667


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015765          261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH  295 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  295 (401)
                      -|....++++|++++..+.+..-+ |...-..++.
T Consensus       214 ~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~  247 (711)
T COG1747         214 KYSENENWTEAIRILKHILEHDEK-DVWARKEIIE  247 (711)
T ss_pred             HhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence            788888999999999888776432 4444444443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.78  E-value=1.4  Score=34.79  Aligned_cols=87  Identities=17%  Similarity=0.058  Sum_probs=37.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHcc
Q 015765          262 LCKLKRSEEAKALLDGMLSRGIKPN-----LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQG  335 (401)
Q Consensus       262 ~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~  335 (401)
                      +.+.|++++|..-|.+..+. +++.     ...|..-..++.+.+.++.|++-....++.+  |+ ......-..+|.+.
T Consensus       105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM  181 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence            34455555555555555543 1111     1122222334444555555555555544432  21 11122223345555


Q ss_pred             CCHHHHHHHHHHHHHC
Q 015765          336 GEYETALKVCRASMAK  351 (401)
Q Consensus       336 g~~~~a~~~~~~~~~~  351 (401)
                      ..+++|+.=+.++.+.
T Consensus       182 ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  182 EKYEEALEDYKKILES  197 (271)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            5555555555555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.77  E-value=4.7  Score=30.82  Aligned_cols=71  Identities=20%  Similarity=0.223  Sum_probs=44.9

Q ss_pred             HHHHhCCCchHHHHHHHHhh-hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 015765           83 SKLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL  158 (401)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  158 (401)
                      ..-.+.++.+++..++..+. -+|..+. ..++.  ...+...|++.+|..+|+++.+..  |....-..|+..|..
T Consensus        18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e-~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   18 SVALRLGDPDDAEALLDALRVLRPEFPE-LDLFD--GWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHccCChHHHHHHHHHHHHhCCCchH-HHHHH--HHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence            34456778888888888877 4454444 33333  344667888889998888886653  444444455554443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.67  E-value=0.24  Score=26.57  Aligned_cols=30  Identities=10%  Similarity=0.014  Sum_probs=17.5

Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015765          347 ASMAKGWVPHFSTMKSLVTGLASISKVAEAN  377 (401)
Q Consensus       347 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  377 (401)
                      +.++.. +-+...|..+...|...|++++|+
T Consensus         4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            344433 445666666666666666666664

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.38  E-value=14  Score=35.38  Aligned_cols=82  Identities=12%  Similarity=0.135  Sum_probs=36.2

Q ss_pred             hCCCchHHHHHHHHhhh-------CCCCCCchhHHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015765           87 QANHFNAISQLLEELKT-------RPDLRQNERFHVHSIVLYGQAN-----MIDHAMQTFEEMDKYGLRQSVDALNALLL  154 (401)
Q Consensus        87 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  154 (401)
                      ...+.+.|+.+++....       .+ .   ......+..+|.+..     +.+.|..++....+.| .|+....-..+.
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~-~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~  335 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG-L---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY  335 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc-C---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            44555666666655543       11 1   112334444444322     3455666666555555 334433322222


Q ss_pred             HHHh-cCCHHHHHHHHHhch
Q 015765          155 GCIL-SKNYEEVKRIFTEFP  173 (401)
Q Consensus       155 ~~~~-~~~~~~a~~~~~~~~  173 (401)
                      .... ..+...|.++|....
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa  355 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAA  355 (552)
T ss_pred             HcCCccccHHHHHHHHHHHH
Confidence            2221 134455555555553

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.37  E-value=6.6  Score=31.72  Aligned_cols=224  Identities=16%  Similarity=0.065  Sum_probs=117.2

Q ss_pred             CCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015765           89 NHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY-GLRQSVDALNALLLGCILSKNYEEVKR  167 (401)
Q Consensus        89 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~  167 (401)
                      +....+...+......................+...+.+..+...+...... ........+......+...++...+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4445555555554422211111345555566666667777777666666542 123344555555556666666666766


Q ss_pred             HHHhchhhcCCCCCH-HhHHHHHH-HHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          168 IFTEFPKVYGIEPNS-ETYNKVIK-SFCESGDSSSVYSILAEMRRKSI--RPNATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       168 ~~~~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      .+......   .++. ........ .+...|+++.+...+.+......  ......+......+...++.+.+...+...
T Consensus       117 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         117 LLEKALAL---DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHcC---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            66666432   1221 22222222 56666777777777776644211  012233333334455566677777777666


Q ss_pred             HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                      ...........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66431113455666666666666677777777666654211 1233333333333555666666666666654

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.31  E-value=12  Score=34.49  Aligned_cols=181  Identities=10%  Similarity=0.069  Sum_probs=115.3

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 015765          179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR  258 (401)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  258 (401)
                      +.|....-+++..+.....+.-+..+..+|...|  -+...|..++.+|... ..++-..+++++.+..+. |+..-..+
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL  138 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL  138 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence            5566667778888888778888888888887764  3566777788877776 667777788877776543 44444455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHH
Q 015765          259 IQSLCKLKRSEEAKALLDGMLSRGIK-----PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG-GCEPDSYCFFMFTYFL  332 (401)
Q Consensus       259 l~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~  332 (401)
                      ...|.+ ++...+..+|.+....-+.     .-...|..+...  -..+.+....+..++... |..--...+.-+-.-|
T Consensus       139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            555544 7777777777777655211     012345555542  234666666666666643 4444455566666777


Q ss_pred             HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765          333 CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL  367 (401)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (401)
                      ....++++|.+++....+.+ ..|.-.-..++.-+
T Consensus       216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            77788888888888777764 33444444444443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.31  E-value=15  Score=35.67  Aligned_cols=184  Identities=11%  Similarity=0.085  Sum_probs=103.2

Q ss_pred             HHHHhhhccCCCCCCcc--HhHHHHHHHHHH-hCCCchHHHHHHHHhhhC---CCCCCchhH--HHHHHHHHHhcCChHH
Q 015765           58 ILDICCGASLAPESPLD--RMAFSIAVSKLS-QANHFNAISQLLEELKTR---PDLRQNERF--HVHSIVLYGQANMIDH  129 (401)
Q Consensus        58 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~~li~~~~~~~~~~~  129 (401)
                      |+..++....+...+|.  ..++-.+...+. ...+++.|...+++....   ++... ..+  ...++..+.+.+... 
T Consensus        40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d-~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD-LKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH-HHHHHHHHHHHHHHhcCHHH-
Confidence            34444444434334443  345555666665 678999999999987622   22211 111  223455666665555 


Q ss_pred             HHHHHHHHhhCC----CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHhchhhcCCCCC--HHhHHHHHHHHH--hcCChhH
Q 015765          130 AMQTFEEMDKYG----LRQSVDALNAL-LLGCILSKNYEEVKRIFTEFPKVYGIEPN--SETYNKVIKSFC--ESGDSSS  200 (401)
Q Consensus       130 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~--~~~~~~~  200 (401)
                      |...+++.++.-    ..+-...|..+ +..+...++...|.+.++.+........|  ..++..++.+..  +.+..+.
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d  197 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD  197 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence            888888866532    11222333333 33333447999999999888655432233  334444555443  3455677


Q ss_pred             HHHHHHHHHhCC---------CCCCHHhHHHHHHHH--HccCChHHHHHHHHHH
Q 015765          201 VYSILAEMRRKS---------IRPNATDFGLLLAGF--YKEHKYEDVGKVLQMM  243 (401)
Q Consensus       201 a~~~~~~~~~~~---------~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~  243 (401)
                      +.+.++++....         ..|...+|..+++.+  ...|+++.+...++++
T Consensus       198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777777763322         133456677776655  4567766776665555

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.20  E-value=13  Score=34.81  Aligned_cols=311  Identities=11%  Similarity=0.075  Sum_probs=183.1

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +...|+.+|.---...+.+.+..++..+.  +..|.-...|......=.+.|..+.+.++|++-+. |++.+...|...+
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL--~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~  120 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFL--SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL  120 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHH--hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence            45567777766666666677777888776  23344355777777777899999999999999876 4567777777766


Q ss_pred             HHHH-hcCCHHHHHHHHHhchhhcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc--
Q 015765          154 LGCI-LSKNYEEVKRIFTEFPKVYGIE-PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK--  229 (401)
Q Consensus       154 ~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--  229 (401)
                      ..+. ..|+.+...+.|+....-.|.. .....|...|..-...+++.....+|+++++....-=...|.........  
T Consensus       121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~  200 (577)
T KOG1258|consen  121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE  200 (577)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence            5444 5678888888898886655543 23446777777778888999999999998865211111112211111111  


Q ss_pred             ---cCChHHHHHHHHHHHH--------------------cCCCCCc--hhHHHHHH-------HHHhcCCHHHHHHHHHH
Q 015765          230 ---EHKYEDVGKVLQMMEK--------------------CGIASGV--NVYNIRIQ-------SLCKLKRSEEAKALLDG  277 (401)
Q Consensus       230 ---~~~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~ll~-------~~~~~~~~~~a~~~~~~  277 (401)
                         ....+++.++-....+                    .+.+.+.  ...+.+-.       ++-......+..-.|+.
T Consensus       201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~  280 (577)
T KOG1258|consen  201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEE  280 (577)
T ss_pred             hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhh
Confidence               1122333322222111                    0000000  01111111       11111122222222222


Q ss_pred             HHHC---CCC----cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          278 MLSR---GIK----PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       278 ~~~~---~~~----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      -...   -++    ++..+|..-+..-...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+
T Consensus       281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~  359 (577)
T KOG1258|consen  281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACK  359 (577)
T ss_pred             hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence            2221   122    24567888888888899999999998887631 112234555666666667999999988887666


Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765          351 KGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       351 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  388 (401)
                      --.+..+.+-..-....-..|+++.|..+++.+.+..|
T Consensus       360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p  397 (577)
T KOG1258|consen  360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP  397 (577)
T ss_pred             hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence            54333332222222223347899999999999988773

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.13  E-value=0.32  Score=26.08  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=10.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHH
Q 015765          144 QSVDALNALLLGCILSKNYEEV  165 (401)
Q Consensus       144 ~~~~~~~~l~~~~~~~~~~~~a  165 (401)
                      -+...|+.+...|...|++++|
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhh
Confidence            3444455555555555555444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.02  E-value=6  Score=37.02  Aligned_cols=46  Identities=13%  Similarity=-0.060  Sum_probs=23.1

Q ss_pred             HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 015765           86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMD  138 (401)
Q Consensus        86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  138 (401)
                      .+.|+++.|.++..+..       +..-|..|.++....|++..|.+.|....
T Consensus       648 l~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~  693 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR  693 (794)
T ss_pred             hhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence            45555555555544432       12235555555555555555555555443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.95  E-value=2.7  Score=37.99  Aligned_cols=133  Identities=11%  Similarity=0.033  Sum_probs=87.2

Q ss_pred             HHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015765          262 LCKLKRSEEAKA-LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET  340 (401)
Q Consensus       262 ~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  340 (401)
                      -...|++-.|-+ ++.-+....-.|+.....+.|.  ...|+++.+.+.+...... +.....+..++++...+.|+++.
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence            334577666544 4444444434455555444443  5678888888887765543 33456678888888888999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015765          341 ALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAAL  398 (401)
Q Consensus       341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ll  398 (401)
                      |...-+-|....+. ++++...-.......|-++++.-.|+++....|+....|-..+
T Consensus       376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~  432 (831)
T PRK15180        376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL  432 (831)
T ss_pred             HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence            99988888876654 4444444444444567888888888888887777666554443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=89.93  E-value=0.73  Score=24.36  Aligned_cols=30  Identities=17%  Similarity=0.044  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765          359 TMKSLVTGLASISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       359 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  388 (401)
                      +|..+...|...|++++|.+.|++..+..|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445555666666666666666666655433

...

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=89.76  E-value=0.75  Score=33.11  Aligned_cols=47  Identities=13%  Similarity=0.075  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      +..+-++.....++.|++......+++|-+.+++..|.++|+-.+.+
T Consensus        67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K  113 (149)
T KOG4077|consen   67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK  113 (149)
T ss_pred             HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            44455555555566677777777777777777777777777655443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.60  E-value=3.4  Score=28.35  Aligned_cols=45  Identities=9%  Similarity=0.135  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015765          200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME  244 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  244 (401)
                      ++.+-++.+....+.|+.......+++|.+.+|+..|.++|+-++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444555555555556666666666666666666666666666554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.22  E-value=5  Score=32.01  Aligned_cols=73  Identities=11%  Similarity=-0.025  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765          269 EEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---GCEPDSYCFFMFTYFLCQGGEYETAL  342 (401)
Q Consensus       269 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~  342 (401)
                      +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+.   +-.+|+..+..|+..+.+.|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            445555555555543334444444444333 44666666666555533   22455666666666666666666553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.99  E-value=16  Score=32.40  Aligned_cols=65  Identities=17%  Similarity=0.012  Sum_probs=44.6

Q ss_pred             CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765          216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS---GVNVYNIRIQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  280 (401)
                      ...+|..+...+.+.|.++.|...+..+...+...   ...+.-.-+...-..|+..+|...++....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44567777788888888888888888776643211   233444455666677888888888877776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.80  E-value=1.2  Score=24.83  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          358 STMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      .+++.+...|...|++++|..++++..+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46777888888888888888888877654

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.61  E-value=6.4  Score=27.39  Aligned_cols=48  Identities=15%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc
Q 015765          129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY  176 (401)
Q Consensus       129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  176 (401)
                      +..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-+....
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~   75 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC   75 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence            555666666667777777777777777777777777777777775543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.45  E-value=17  Score=33.26  Aligned_cols=90  Identities=13%  Similarity=0.143  Sum_probs=58.2

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765          191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE  270 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  270 (401)
                      .+...|+++.+...+....+. +.....+..++++...+.|+++.|..+-+.|....++ +..+........-..|-+++
T Consensus       332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~  409 (831)
T PRK15180        332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK  409 (831)
T ss_pred             HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence            345667888887777665443 3445667777788888888888888887777665544 33333333333344567778


Q ss_pred             HHHHHHHHHHCC
Q 015765          271 AKALLDGMLSRG  282 (401)
Q Consensus       271 a~~~~~~~~~~~  282 (401)
                      +...|+++...+
T Consensus       410 ~~~~wk~~~~~~  421 (831)
T PRK15180        410 SYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHHHhccC
Confidence            888887776553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=88.18  E-value=1.6  Score=37.55  Aligned_cols=88  Identities=15%  Similarity=0.016  Sum_probs=48.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 015765          260 QSLCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY  338 (401)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  338 (401)
                      .-|.+.|.+++|++.|..-...  .| |.+++..-..+|.+...+..|..=....+..+ ..-...|..-+.+-...|..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence            4566777777777777766554  33 66666666677777777776665555554321 01112233333333334555


Q ss_pred             HHHHHHHHHHHH
Q 015765          339 ETALKVCRASMA  350 (401)
Q Consensus       339 ~~a~~~~~~~~~  350 (401)
                      .+|.+=++..++
T Consensus       182 ~EAKkD~E~vL~  193 (536)
T KOG4648|consen  182 MEAKKDCETVLA  193 (536)
T ss_pred             HHHHHhHHHHHh
Confidence            555555555443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=88.02  E-value=13  Score=30.15  Aligned_cols=63  Identities=14%  Similarity=0.072  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015765          112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  175 (401)
                      .+||.+...+...|+++.|.+.|+...+.+..-+-...|.-|.. .-.|+++-|.+-+.+.-+.
T Consensus       100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~  162 (297)
T COG4785         100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQD  162 (297)
T ss_pred             HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhc
Confidence            47888888888888888888888888876533232333333332 3357777777766666444

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.99  E-value=0.23  Score=37.57  Aligned_cols=85  Identities=16%  Similarity=0.147  Sum_probs=60.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE  337 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  337 (401)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.       .+..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence            5677777788888888888888766555678888888888888777777777761       122334566777888888


Q ss_pred             HHHHHHHHHHHH
Q 015765          338 YETALKVCRASM  349 (401)
Q Consensus       338 ~~~a~~~~~~~~  349 (401)
                      ++++.-++.++-
T Consensus        86 ~~~a~~Ly~~~~   97 (143)
T PF00637_consen   86 YEEAVYLYSKLG   97 (143)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcc
Confidence            888888777543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=87.79  E-value=51  Score=36.80  Aligned_cols=313  Identities=9%  Similarity=0.003  Sum_probs=167.8

Q ss_pred             HHHhcCCChhHHHHHhhhccCC-CCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC
Q 015765           47 ARLKSESNPFRILDICCGASLA-PESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN  125 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  125 (401)
                      .+-.+.+.+.+|+-.++..... .........|..+...|+..++++...-+...-...+      . +..-|......|
T Consensus      1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~------s-l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP------S-LYQQILEHEASG 1463 (2382)
T ss_pred             HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc------c-HHHHHHHHHhhc
Confidence            3445666788888888773111 1111223344455558999999998877776422122      1 334455566789


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH-HHHHHHhcCChhHHHHH
Q 015765          126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK-VIKSFCESGDSSSVYSI  204 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~  204 (401)
                      +++.|..-|+.+.+.+ ++...+++-++......|.++.++...+-....  ..+....+++ =+.+-.+.+++|...+.
T Consensus      1464 ~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred             cHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence            9999999999999876 445777777777777788888887766665322  1333333433 33444778888887777


Q ss_pred             HHHHHhCCCCCCHHhHHHH--HHHHHcc--CChHHHHHHHHHHHHc--------CCC-CCchhHHHHHHHHHhcCCHHHH
Q 015765          205 LAEMRRKSIRPNATDFGLL--LAGFYKE--HKYEDVGKVLQMMEKC--------GIA-SGVNVYNIRIQSLCKLKRSEEA  271 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~l--l~~~~~~--~~~~~a~~~~~~~~~~--------~~~-~~~~~~~~ll~~~~~~~~~~~a  271 (401)
                      ..   +.    +..+|...  .....+.  .|.-...+..+.+.+.        +.. .-...|..++....-..    -
T Consensus      1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l 1609 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----L 1609 (2382)
T ss_pred             hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----H
Confidence            66   11    22222222  2222222  2221121233322221        111 11133444443332211    1


Q ss_pred             HHHHHHHHHCCCCcCH------HHHHHHHH---HHhcCCChHHHHHHHHHHHhCCCCC-----CHhhHHHHHHHHHccCC
Q 015765          272 KALLDGMLSRGIKPNL------DTYKHLIH---GFGKEGNLEGAKKLFASMTNGGCEP-----DSYCFFMFTYFLCQGGE  337 (401)
Q Consensus       272 ~~~~~~~~~~~~~p~~------~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~  337 (401)
                      ....+...  ++.++.      .-|..-+.   .+.+..++-.|.+  +.+......|     -..+|....+.....|.
T Consensus      1610 ~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~R--Rs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1610 ENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFR--RSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred             HHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHH--HHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence            11111111  112221      12221221   1222111111111  1111111121     24678888888888999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          338 YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      ++.|...+-++.+.+ .  +..+.-.+...-..|+...|+.++++..++.
T Consensus      1686 ~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            999999887777765 2  3456666777888999999999999998773

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.40  E-value=22  Score=36.31  Aligned_cols=145  Identities=9%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             ccccCCCcchhhchhHHHHHHHHHHhcCCChhHHHHHhhhccCC--CCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh
Q 015765           25 SLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLA--PESPLDRMAFSIAVSKLSQANHFNAISQLLEELK  102 (401)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  102 (401)
                      +......+..+.....-+..+++++.+.+-++.+.++-..+.+.  +..+.-..+++.+.+.....|.+.+|...+   .
T Consensus       969 sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~ 1045 (1480)
T KOG4521|consen  969 SVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---L 1045 (1480)
T ss_pred             chhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---H
Confidence            44444444444455677889999999999999998887665422  223333457788888888888888876654   3


Q ss_pred             hCCCCCCchhHHHHHHHHHHhcCChHH------------HHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015765          103 TRPDLRQNERFHVHSIVLYGQANMIDH------------AMQ-TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIF  169 (401)
Q Consensus       103 ~~~~~~~~~~~~~~li~~~~~~~~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  169 (401)
                      ..++..........++.....+|.++.            ... +++..-+.........|+.|-..+...+++.+|-.+.
T Consensus      1046 ~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1046 RNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence            355544445567777878888887543            333 3333333332334455776777778888998877665


Q ss_pred             Hhc
Q 015765          170 TEF  172 (401)
Q Consensus       170 ~~~  172 (401)
                      -+.
T Consensus      1126 YEy 1128 (1480)
T KOG4521|consen 1126 YEY 1128 (1480)
T ss_pred             HHH
Confidence            544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.20  E-value=33  Score=34.03  Aligned_cols=301  Identities=12%  Similarity=0.059  Sum_probs=147.1

Q ss_pred             hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHH----HhCCCchHHHHHHHHhhhCCCCCCchhHH
Q 015765           39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKL----SQANHFNAISQLLEELKTRPDLRQNERFH  114 (401)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  114 (401)
                      ++....+..-+...|.+.+|++.--.+.       |......++..+    ...+++.....+.+.+... -...++...
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~-~l~~~P~Lv  418 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAAG-------DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAE-LLASTPRLV  418 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhCC-------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHH-HHhhCchHH
Confidence            3444555566666666666666544331       223333333333    2334444444444333200 000101111


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHhchhhc---CCCCCHH
Q 015765          115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV-------DALNALLL-GCILSKNYEEVKRIFTEFPKVY---GIEPNSE  183 (401)
Q Consensus       115 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~  183 (401)
                      -.-+=.....+++++|..++.++...-..|+.       ..|+.+-. .....|++++|.++-+....+.   ...+...
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            11122234678899999988887553222221       13444422 2345688888888877665432   1223445


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH-----HHHHccCChH--HHHHHHHHHHHc---CCC---C
Q 015765          184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLL-----AGFYKEHKYE--DVGKVLQMMEKC---GIA---S  250 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~~~~~--~a~~~~~~~~~~---~~~---~  250 (401)
                      .+..+..+..-.|++++|..+..+..+..-.-+...+..+.     ..+...|+..  +.+..+......   ..+   +
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            66677777788899999998887765542233443333222     2344556322  222333322211   001   1


Q ss_pred             CchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHhcCCChHHHHHHHHHHHhCCCCC----CHh
Q 015765          251 GVNVYNIRIQSLCKL-KRSEEAKALLDGMLSRGIKPNLDT--YKHLIHGFGKEGNLEGAKKLFASMTNGGCEP----DSY  323 (401)
Q Consensus       251 ~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~  323 (401)
                      -..++..++.++.+. +...++..-++-.......|-...  +..|+......|+.++|...++++......+    +..
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~  658 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL  658 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence            123344445555441 112222222222222222222222  2366777888999999999888887543233    222


Q ss_pred             hHHHHHH--HHHccCCHHHHHHHHHH
Q 015765          324 CFFMFTY--FLCQGGEYETALKVCRA  347 (401)
Q Consensus       324 ~~~~li~--~~~~~g~~~~a~~~~~~  347 (401)
                      .-...+.  .....|+.+.+.....+
T Consensus       659 a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         659 AAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            2222222  23457788777776655

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.98  E-value=0.37  Score=36.38  Aligned_cols=83  Identities=22%  Similarity=0.192  Sum_probs=46.8

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015765          188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR  267 (401)
Q Consensus       188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  267 (401)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            34555556666777777777766554555666677777777776666666665511       11222345555555566


Q ss_pred             HHHHHHHHHH
Q 015765          268 SEEAKALLDG  277 (401)
Q Consensus       268 ~~~a~~~~~~  277 (401)
                      ++++.-++.+
T Consensus        86 ~~~a~~Ly~~   95 (143)
T PF00637_consen   86 YEEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            6555555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.84  E-value=2.1  Score=22.54  Aligned_cols=18  Identities=17%  Similarity=0.237  Sum_probs=6.3

Q ss_pred             HHHHhcCChHHHHHHHHH
Q 015765          119 VLYGQANMIDHAMQTFEE  136 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~~  136 (401)
                      ..|...|++++|+..|++
T Consensus         9 ~~~~~~~~~~~A~~~~~~   26 (34)
T PF00515_consen    9 NAYFQLGDYEEALEYYQR   26 (34)
T ss_dssp             HHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHhCCchHHHHHHHH
Confidence            333333333333333333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.53  E-value=2  Score=23.79  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          323 YCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      .+++.+...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4567777777777888888877776654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.27  E-value=15  Score=29.17  Aligned_cols=54  Identities=7%  Similarity=-0.007  Sum_probs=23.7

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                      .....|.+|.|+.+++.....+.  .......-.+.+...|+.++|..-|+...+.
T Consensus       135 vq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         135 VQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence            34444555555555544333211  1112223334455555555555555555444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=86.13  E-value=20  Score=30.49  Aligned_cols=117  Identities=10%  Similarity=0.077  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCHHHH
Q 015765          266 KRSEEAKALLDGMLS-RGIKPNLDTYKHLIHGFGK-EG-NLEGAKKLFASMTNG-GCEPDSYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       266 ~~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a  341 (401)
                      ..+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+... |..++..+...++..++..+++.+-
T Consensus       142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl  221 (292)
T PF13929_consen  142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL  221 (292)
T ss_pred             HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence            345566666663322 1234466666666666654 22 233333444444433 4567777888888888888888888


Q ss_pred             HHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015765          342 LKVCRASMAK-GWVPHFSTMKSLVTGLASISKVAEANELIGL  382 (401)
Q Consensus       342 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  382 (401)
                      .++|+.-... +...|...|..+++...+.|+..-..+++++
T Consensus       222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            8888876665 4566788888888888888888766666554

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.09  E-value=20  Score=30.47  Aligned_cols=62  Identities=11%  Similarity=0.057  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          324 CFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      +++.....|..+|.+.+|.++.++....+ +.+...+-.++..+...||--.+.+-++.+.+.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~v  342 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEV  342 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence            34555677889999999999999888775 667788889999999999977777777766543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.04  E-value=2.4  Score=22.16  Aligned_cols=17  Identities=29%  Similarity=0.417  Sum_probs=6.0

Q ss_pred             HHHhcCChHHHHHHHHH
Q 015765          120 LYGQANMIDHAMQTFEE  136 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~  136 (401)
                      .+...|++++|++.|++
T Consensus        10 ~~~~~~~~~~A~~~~~~   26 (34)
T PF07719_consen   10 AYYQLGNYEEAIEYFEK   26 (34)
T ss_dssp             HHHHTT-HHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHH
Confidence            33333333333333333

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.02  E-value=35  Score=33.17  Aligned_cols=196  Identities=11%  Similarity=0.052  Sum_probs=113.6

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--hhHHHHHHHHHH-hcCChHHHHHHHHHHhhCCCCCCHH---
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--ERFHVHSIVLYG-QANMIDHAMQTFEEMDKYGLRQSVD---  147 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~---  147 (401)
                      +...|..+|..         |+..++.+......++.  ..++..+...+. ...++++|+..+++.....-.++..   
T Consensus        29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k   99 (608)
T PF10345_consen   29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK   99 (608)
T ss_pred             hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence            55567777654         55566666544444442  344455556555 7889999999999875433222222   


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHhchhhcCC---CCCHHhHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHH
Q 015765          148 --ALNALLLGCILSKNYEEVKRIFTEFPKVYGI---EPNSETYNKV-IKSFCESGDSSSVYSILAEMRRKS---IRPNAT  218 (401)
Q Consensus       148 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~  218 (401)
                        .-..++..+.+.+... |...+++..+...-   .+-...|..+ +..+...++...|.+.++.+....   ..|-..
T Consensus       100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~  178 (608)
T PF10345_consen  100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF  178 (608)
T ss_pred             HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence              2234556666666555 88888887654322   1222334444 333333479999999999886532   234444


Q ss_pred             hHHHHHHHHH--ccCChHHHHHHHHHHHHcC---------CCCCchhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 015765          219 DFGLLLAGFY--KEHKYEDVGKVLQMMEKCG---------IASGVNVYNIRIQSLC--KLKRSEEAKALLDGML  279 (401)
Q Consensus       219 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~  279 (401)
                      ++..++.+..  +.+..+++.+.++.+....         -.|...+|..+++.++  ..|+++.+...++++.
T Consensus       179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555544  4455677777777663321         1234566777766654  4677666666655543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.90  E-value=16  Score=29.06  Aligned_cols=88  Identities=13%  Similarity=0.002  Sum_probs=45.5

Q ss_pred             HHHhcCCChHHHHHHHHHHHhCCCCCCHhhHH-----HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015765          295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFF-----MFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS  369 (401)
Q Consensus       295 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (401)
                      ..+...|++++|..-++.....   |....+.     .|.+.....|.+++|...++.....++  .......-.+++..
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~  171 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA  171 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence            3455566666666666655532   2222222     233445556666666666665444332  22233334455666


Q ss_pred             cCCHHHHHHHHHHHHhcC
Q 015765          370 ISKVAEANELIGLMKKRF  387 (401)
Q Consensus       370 ~g~~~~a~~~~~~~~~~~  387 (401)
                      .|+-++|+.-|++..+.+
T Consensus       172 kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         172 KGDKQEARAAYEKALESD  189 (207)
T ss_pred             cCchHHHHHHHHHHHHcc
Confidence            666666666666665553

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.51  E-value=0.78  Score=23.81  Aligned_cols=28  Identities=21%  Similarity=0.455  Sum_probs=21.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCCcccchhcC
Q 015765          371 SKVAEANELIGLMKKRFPKSGDMWNAAL  398 (401)
Q Consensus       371 g~~~~a~~~~~~~~~~~~~~~~~~~~ll  398 (401)
                      |+.+.|..+|+++....|.+...|...+
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            5677888888888888887777776654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.82  E-value=15  Score=34.65  Aligned_cols=97  Identities=13%  Similarity=0.025  Sum_probs=52.8

Q ss_pred             ccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHH
Q 015765          229 KEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK  308 (401)
Q Consensus       229 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~  308 (401)
                      +.|+++.|.++..+.      .+..-|..|.++....+++..|.+.|.+..+         |..|+-.+...|+.+....
T Consensus       649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            445555554443321      2455566666666666666666666655433         3344555555666655555


Q ss_pred             HHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 015765          309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR  346 (401)
Q Consensus       309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  346 (401)
                      +-....+.|.      .|....+|...|+++++.+++.
T Consensus       714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHH
Confidence            5555555441      2233344555677777776654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.63  E-value=11  Score=30.47  Aligned_cols=77  Identities=12%  Similarity=0.160  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCchhHHHHHHH
Q 015765          184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG--IASGVNVYNIRIQS  261 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~  261 (401)
                      |.+..++.+.+.+.+++++...++-.+.. +-|...-..+++.+|-.|++++|..-++-.-...  ..+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34455666777777888887777766552 4455666677777888888888876666554431  12233455555543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.47  E-value=1.6  Score=21.60  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=11.9

Q ss_pred             HHHHHHHHccCCHHHHHHHHH
Q 015765          361 KSLVTGLASISKVAEANELIG  381 (401)
Q Consensus       361 ~~l~~~~~~~g~~~~a~~~~~  381 (401)
                      ..+..++...|++++|..+++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            345555566666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.21  E-value=24  Score=29.66  Aligned_cols=27  Identities=11%  Similarity=0.383  Sum_probs=15.4

Q ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015765          285 PNLDTYKHLIHGFGKEGNLEGAKKLFAS  312 (401)
Q Consensus       285 p~~~~~~~li~~~~~~~~~~~a~~~~~~  312 (401)
                      |.....+.|+.+|. .+++.+-.+++..
T Consensus       302 PEIlAMTnlv~aYQ-~NdI~eFE~Il~~  328 (440)
T KOG1464|consen  302 PEILAMTNLVAAYQ-NNDIIEFERILKS  328 (440)
T ss_pred             HHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence            34455677777774 4455555555543

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=84.21  E-value=6.6  Score=31.44  Aligned_cols=35  Identities=17%  Similarity=0.319  Sum_probs=24.2

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765          354 VPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       354 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  388 (401)
                      .|++.+|..++.++...|+.++|.+...++...+|
T Consensus       141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            56666777667777777777777777777666666

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=84.12  E-value=19  Score=30.45  Aligned_cols=88  Identities=6%  Similarity=0.156  Sum_probs=56.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhchh-hcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH--
Q 015765          151 ALLLGCILSKNYEEVKRIFTEFPK-VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGF--  227 (401)
Q Consensus       151 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--  227 (401)
                      .=|.+++..++|.+++...-+.-+ ...++|.  ....-|-.|.+.+.+..+.++-.......-.-+...|..+...|  
T Consensus        88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl  165 (309)
T PF07163_consen   88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL  165 (309)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence            347889999999988776544422 1123443  34444556788899988888887776543222344466666554  


Q ss_pred             ---HccCChHHHHHHH
Q 015765          228 ---YKEHKYEDVGKVL  240 (401)
Q Consensus       228 ---~~~~~~~~a~~~~  240 (401)
                         .=.|.+++|+++.
T Consensus       166 ~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  166 HVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHhccccHHHHHHHH
Confidence               4568888888776

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=83.93  E-value=2.8  Score=38.93  Aligned_cols=99  Identities=17%  Similarity=0.014  Sum_probs=76.3

Q ss_pred             hcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015765          298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN  377 (401)
Q Consensus       298 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  377 (401)
                      ...|+...|...+.........-.......+.....+.|....|..++....... ...+-++..+.++|....++++|+
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~  696 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL  696 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence            3468888888888877654322233455667777788888889999988877765 455678888899999999999999


Q ss_pred             HHHHHHHhcCCCCcccchhc
Q 015765          378 ELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~l  397 (401)
                      +.|++..++.+.+.+.-|.|
T Consensus       697 ~~~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  697 EAFRQALKLTTKCPECENSL  716 (886)
T ss_pred             HHHHHHHhcCCCChhhHHHH
Confidence            99999999988887766654

>PRK09687 putative lyase; Provisional

Probab=83.41  E-value=28  Score=29.86  Aligned_cols=221  Identities=14%  Similarity=0.094  Sum_probs=102.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCHHh
Q 015765          144 QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS----SSVYSILAEMRRKSIRPNATD  219 (401)
Q Consensus       144 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~  219 (401)
                      ++..+....+..+...|..+ +...+..+.+    .+|...-...+.++.+.|+.    +++...+..+...  .++..+
T Consensus        35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V  107 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV  107 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence            44445555555555555432 2222333322    33444444445555555542    3455555554222  334444


Q ss_pred             HHHHHHHHHccCCh-----HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015765          220 FGLLLAGFYKEHKY-----EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI  294 (401)
Q Consensus       220 ~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li  294 (401)
                      -...+.++...+..     ..+...+.....   .++..+-...+.++.+.++ +++...+-.+.+.   +|...-...+
T Consensus       108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~  180 (280)
T PRK09687        108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA  180 (280)
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence            44444444443321     112222222222   2244455555666666655 3344444444432   2333444444


Q ss_pred             HHHhcCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 015765          295 HGFGKEG-NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV  373 (401)
Q Consensus       295 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  373 (401)
                      .++.+.+ +...+...+..+..   .++..+-...+.++.+.|+. .+...+-+..+.+   +  .....+.++...|+.
T Consensus       181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK  251 (280)
T ss_pred             HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence            4444432 23345555555553   34555666666666666663 4444444444432   1  233556666666664


Q ss_pred             HHHHHHHHHHHhcCC
Q 015765          374 AEANELIGLMKKRFP  388 (401)
Q Consensus       374 ~~a~~~~~~~~~~~~  388 (401)
                       +|...+..+.+.++
T Consensus       252 -~a~p~L~~l~~~~~  265 (280)
T PRK09687        252 -TLLPVLDTLLYKFD  265 (280)
T ss_pred             -hHHHHHHHHHhhCC
Confidence             56666666665444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=83.39  E-value=3.8  Score=21.44  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          324 CFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      +|..+...|...|++++|.+.|++..+.
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5666677777788888888888776653

...

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.34  E-value=33  Score=30.70  Aligned_cols=163  Identities=11%  Similarity=0.080  Sum_probs=88.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc--------CCCC
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYG--LRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY--------GIEP  180 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~  180 (401)
                      ...+..+...|..+|+++.|++.|.+..+.-  .+.....|..+|..-+-.|+|.....+..+.....        .+++
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            4566777888999999999999999965532  12234456666677777888887777766663210        1222


Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHhHHHHHHHHHccCChHHHHHH-----HHHHHHcCCC
Q 015765          181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKS------IRPNATDFGLLLAGFYKEHKYEDVGKV-----LQMMEKCGIA  249 (401)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~  249 (401)
                      ....+..+...+.  ++++.|.+.|-......      +.|...+....+.+++--++-+--..+     |+.+.+.   
T Consensus       230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel---  304 (466)
T KOG0686|consen  230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL---  304 (466)
T ss_pred             chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc---
Confidence            3333444443333  36777766664432211      233333333344444443333322222     2222222   


Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       250 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                       ....+.++...|  .+++..+.++++++...
T Consensus       305 -~Pqlr~il~~fy--~sky~~cl~~L~~~k~~  333 (466)
T KOG0686|consen  305 -EPQLREILFKFY--SSKYASCLELLREIKPR  333 (466)
T ss_pred             -ChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence             223344444333  36788888888887654

>smart00028 TPR Tetratricopeptide repeats

Probab=83.11  E-value=2.5  Score=21.12  Aligned_cols=27  Identities=15%  Similarity=0.048  Sum_probs=14.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          360 MKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       360 ~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      +..+...+...|++++|...++...+.
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            344445555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.00  E-value=3.6  Score=27.04  Aligned_cols=46  Identities=11%  Similarity=-0.062  Sum_probs=19.6

Q ss_pred             hCCCchHHHHHHHHhhhC-CCCCCchhHHHHHHHHHHhcCChHHHHH
Q 015765           87 QANHFNAISQLLEELKTR-PDLRQNERFHVHSIVLYGQANMIDHAMQ  132 (401)
Q Consensus        87 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~  132 (401)
                      ..++-++|+..|+..... ...+.-..++..++.+|+..|++.++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~   64 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA   64 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555444421 1111122334444555555555555444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.90  E-value=3.2  Score=23.81  Aligned_cols=23  Identities=22%  Similarity=0.426  Sum_probs=12.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh
Q 015765          188 VIKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       188 l~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                      +..+|...|+.+.|.++++++..
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            34455555555555555555544

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=82.87  E-value=2.3  Score=22.03  Aligned_cols=20  Identities=20%  Similarity=0.260  Sum_probs=8.7

Q ss_pred             HHHhcCCHHHHHHHHHhchh
Q 015765          155 GCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       155 ~~~~~~~~~~a~~~~~~~~~  174 (401)
                      ++.+.|++++|.+.|+++.+
T Consensus         9 ~~~~~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    9 CYYKLGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHH
Confidence            33344444444444444433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=82.49  E-value=25  Score=28.60  Aligned_cols=31  Identities=13%  Similarity=0.322  Sum_probs=22.1

Q ss_pred             HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          322 SYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      ..||.-+.+.+...|+.++|..+|+-.+..+
T Consensus       237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         237 TETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            3577777777777777777777777666554

>PRK09687 putative lyase; Provisional

Probab=82.08  E-value=32  Score=29.54  Aligned_cols=136  Identities=14%  Similarity=0.040  Sum_probs=66.9

Q ss_pred             CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015765          216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK-RSEEAKALLDGMLSRGIKPNLDTYKHLI  294 (401)
Q Consensus       216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li  294 (401)
                      +..+-...+.++.+.++ ..+...+-.+.+.   ++..+-...+.++.+.+ +...+...+..+..   .+|...-...+
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~  213 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI  213 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence            44444455555555554 3344444444432   23344444555555432 13344444444443   23555555566


Q ss_pred             HHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765          295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL  367 (401)
Q Consensus       295 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (401)
                      .++.+.|+ ..+...+-...+.+   +  .....+.++...|.. +|...+..+.+.  .+|..+-...+.++
T Consensus       214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            66666665 34444444444432   1  233556666666664 566666666653  24555555555444

>PRK11619 lytic murein transglycosylase; Provisional

Probab=81.99  E-value=54  Score=32.11  Aligned_cols=326  Identities=8%  Similarity=0.011  Sum_probs=179.3

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS  117 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  117 (401)
                      ....+..+.+.+.... +..+..+...+...| .. .-..|..+...+ ....+++...++++   .++.|.....-...
T Consensus        33 ~r~~f~~A~~a~~~g~-~~~~~~~~~~l~d~p-L~-~yl~y~~L~~~l-~~~~~~ev~~Fl~~---~~~~P~~~~Lr~~~  105 (644)
T PRK11619         33 QRQRYQQIKQAWDNRQ-MDVVEQLMPTLKDYP-LY-PYLEYRQLTQDL-MNQPAVQVTNFIRA---NPTLPPARSLQSRF  105 (644)
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHhccCCC-cH-hHHHHHHHHhcc-ccCCHHHHHHHHHH---CCCCchHHHHHHHH
Confidence            4566777777776655 777777766653322 21 122333333222 23345555555554   56666656666677


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      ...+.+.+++...++.+..-     +.+...-.....+....|+.++|......+-...  ......++.++..+.+.|.
T Consensus       106 l~~La~~~~w~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~  178 (644)
T PRK11619        106 VNELARREDWRGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGK  178 (644)
T ss_pred             HHHHHHccCHHHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCC
Confidence            77778888888877733221     4566666777888888999887776666664332  3345678888888887776


Q ss_pred             hhHHH--HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH---------cCCCCCchhHHHHHHHHH--h
Q 015765          198 SSSVY--SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK---------CGIASGVNVYNIRIQSLC--K  264 (401)
Q Consensus       198 ~~~a~--~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~ll~~~~--~  264 (401)
                      +....  +-++.+...|   +...-..+...+.  .+.....+.+..+..         ...+++...-..++.++.  .
T Consensus       179 lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rla  253 (644)
T PRK11619        179 QDPLAYLERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVA  253 (644)
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHH
Confidence            54432  2222223222   2222222222110  000100011111100         111223222222222222  3


Q ss_pred             cCCHHHHHHHHHHHHHCC-CCcCH--HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 015765          265 LKRSEEAKALLDGMLSRG-IKPNL--DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       265 ~~~~~~a~~~~~~~~~~~-~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  341 (401)
                      ..+.+.|..++....... ..+..  ..+..+.......+...++...++.....  ..+......-+..-...++++.+
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence            456788999998875443 22222  23344433333332255666666654432  23444555556666688999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      ...+..|-... .-...-..-+.+++...|+.++|...|+++..
T Consensus       332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88888875542 33555666778887788999999999998744

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=81.90  E-value=13  Score=29.18  Aligned_cols=75  Identities=23%  Similarity=0.312  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015765          128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSK----N-------YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG  196 (401)
Q Consensus       128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  196 (401)
                      ++|..-|++.+... +....++..+..+|...+    +       +++|.+.|++..+.   .|+...|+.-+....   
T Consensus        52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~---  124 (186)
T PF06552_consen   52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAA---  124 (186)
T ss_dssp             HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH---
Confidence            34444444444432 222355555555554332    2       44455555555443   677777776666542   


Q ss_pred             ChhHHHHHHHHHHhCC
Q 015765          197 DSSSVYSILAEMRRKS  212 (401)
Q Consensus       197 ~~~~a~~~~~~~~~~~  212 (401)
                         +|-++..++.+.+
T Consensus       125 ---kap~lh~e~~~~~  137 (186)
T PF06552_consen  125 ---KAPELHMEIHKQG  137 (186)
T ss_dssp             ---THHHHHHHHHHSS
T ss_pred             ---hhHHHHHHHHHHH
Confidence               4555555555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.87  E-value=28  Score=28.70  Aligned_cols=29  Identities=3%  Similarity=0.059  Sum_probs=18.8

Q ss_pred             HHHHhcCCChHHHHHHHHHHHhCCCCCCH
Q 015765          294 IHGFGKEGNLEGAKKLFASMTNGGCEPDS  322 (401)
Q Consensus       294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~  322 (401)
                      ...-...+++.+|.++|++.....+..+.
T Consensus       161 A~yaa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  161 AQYAAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            33344567888888888887766444443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=81.81  E-value=4.3  Score=24.43  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=15.5

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          363 LVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      +.-++.+.|++++|.+..+.+.+..|.|
T Consensus         7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N   34 (53)
T PF14853_consen    7 LAIGHYKLGEYEKARRYCDALLEIEPDN   34 (53)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence            4445556666666666666666655554

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.39  E-value=15  Score=29.76  Aligned_cols=77  Identities=10%  Similarity=-0.001  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 015765          254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG--GCEPDSYCFFMFTYF  331 (401)
Q Consensus       254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~  331 (401)
                      |.+..++.+.+.+.+.+++...++-.+.+ +-|..+-..+++.++-.|++++|..-++-.-+.  ...+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            45566778888899999999988777763 225667778899999999999998777665543  123445667777765

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=81.34  E-value=16  Score=25.48  Aligned_cols=52  Identities=17%  Similarity=0.191  Sum_probs=26.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015765          260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG  317 (401)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  317 (401)
                      ..+...|++++|..+.+.+    +.||...|-+|...  +.|..+++..-+.+|..+|
T Consensus        47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg   98 (115)
T TIGR02508        47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG   98 (115)
T ss_pred             HHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence            3444555666665554433    35555555554442  4455555555555555444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.26  E-value=25  Score=28.17  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=9.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 015765          261 SLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      +|.+...+++|+.-|+.+.+.
T Consensus       177 ayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  177 AYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHHhhhhHHHHHHHHHHHHHh
Confidence            344444444444444444443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=81.19  E-value=33  Score=29.15  Aligned_cols=25  Identities=24%  Similarity=0.169  Sum_probs=18.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          361 KSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       361 ~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      ..++.++.+.|.+.+|+.+++.+..
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll~  153 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLLH  153 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHH
Confidence            4567778888888888887776544

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=81.10  E-value=21  Score=26.89  Aligned_cols=45  Identities=18%  Similarity=0.222  Sum_probs=19.3

Q ss_pred             hhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 015765          253 NVYNIRIQSLCKLKR-SEEAKALLDGMLSRGIKPNLDTYKHLIHGF  297 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  297 (401)
                      ..|.+++.+.++..- ---+..+|.-|++.+.+++..-|..+|.++
T Consensus        80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~  125 (145)
T PF13762_consen   80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA  125 (145)
T ss_pred             chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            334444444433333 222344444444444444444444444444

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=80.97  E-value=36  Score=29.50  Aligned_cols=97  Identities=12%  Similarity=0.121  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHH-HhcCCChHHHHHHHHHHHhCCCCCCH----h
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPNLDTYKHLIHG-FGKEGNLEGAKKLFASMTNGGCEPDS----Y  323 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~----~  323 (401)
                      ..+......||+.|+.+.|.+.+.+-.++    |.+.|+..+.+-+.. |....-+.+-.+..+.+.+.|...+.    .
T Consensus       105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK  184 (393)
T KOG0687|consen  105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK  184 (393)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence            45666677888888888888877765543    667776655544333 33333445555666666666655443    3


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          324 CFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      +|..+-  |....++.+|-.+|-+....
T Consensus       185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT  210 (393)
T KOG0687|consen  185 VYQGLY--CMSVRNFKEAADLFLDSVST  210 (393)
T ss_pred             HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence            343332  34556778888877665543

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.94  E-value=5  Score=23.02  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=9.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 015765          259 IQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       259 l~~~~~~~~~~~a~~~~~~~~~  280 (401)
                      ..+|...|+.+.|..+++++..
T Consensus         6 A~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         6 ARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHcCChHHHHHHHHHHHH
Confidence            3444444444444444444443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	401
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	8e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 4e-13
 Identities = 54/448 (12%), Positives = 123/448 (27%), Gaps = 122/448 (27%)

Query: 4   LYRLRTNFNL---------KTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESN 54
           L  LR   N+         KT     +A    LS         ++ K             
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTW----VALDVCLSYK-------VQCK------------M 180

Query: 55  PFRILDICCGASLAPES---PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNE 111
            F+I  +      +PE+    L ++ + I  +  S+++H + I   +  ++         
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 112 RFHVHS-IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGC---ILSKNYEEVKR 167
           + + +  +VL        +              Q+  A NA  L C   + ++  +    
Sbjct: 241 KPYENCLLVL-------LNV-------------QNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 168 IFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFG-LLLAG 226
           +         ++ +S T            +  S+     + R + +           L+ 
Sbjct: 281 LSAATTTHISLDHHSMTLTP--------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 227 F-------------YKEHKYEDVGKVLQM---------MEKCGIASGV---NVYNIRIQS 261
                         +K    + +  +++            K      V   +  +I    
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTIL 391

Query: 262 LCKL---KRSEEAKALLDGMLSRG-IKPNLDTYKHLIHG--FGKEGNLEGAKKLFASMTN 315
           L  +       +   +++ +     ++         I       +  LE    L  S+ +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 316 ----------GGCEP---DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS 362
                         P   D Y +    + L      E      R ++ +     F  ++ 
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE------RMTLFRMVFLDFRFLEQ 505

Query: 363 LV--TGLASISKVAEANELIGLMK-KRF 387
            +     A  +  +  N L  L   K +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPY 533

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 46/280 (16%), Positives = 84/280 (30%), Gaps = 89/280 (31%)

Query: 12  NLKTVNYRNLAT---SSL--LSAGDEAA---ALTIKEK----KRATIARL---KSESNPF 56
           N K VN   L T   SSL  L   +       L++           ++ +     +S+  
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 57  RILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH 116
            +++     SL  + P      SI              S  LE      +        +H
Sbjct: 406 VVVNKLHKYSLVEKQP-KESTISI---------P----SIYLELKVKLENEYA-----LH 446

Query: 117 SIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY------------EE 164
             ++                 D Y + ++ D  + L+   +    Y            E 
Sbjct: 447 RSIV-----------------DHYNIPKTFD-SDDLIPPYL--DQYFYSHIGHHLKNIEH 486

Query: 165 VKRIFTEFPKVYG----IEPNSETYNKVIKSFCESGDSSSVYSILAEMR--RKSIRPNAT 218
            +R  T F  V+     +E       K+         S S+ + L +++  +  I  N  
Sbjct: 487 PER-MTLFRMVFLDFRFLE------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 219 DFGLL---LAGFYKEH-------KYEDVGKVLQMMEKCGI 248
            +  L   +  F  +        KY D+ ++  M E   I
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 44/278 (15%), Positives = 75/278 (26%), Gaps = 82/278 (29%)

Query: 133 TFEEMDK-YGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191
           + EE+D     + +V      L   +LSK  E V++   E      +  N          
Sbjct: 47  SKEEIDHIIMSKDAVSGTL-RLFWTLLSKQEEMVQKFVEE-----VLRIN---------- 90

Query: 192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG 251
                     Y  L                  +    ++  Y D     Q+  K  ++  
Sbjct: 91  ----------YKFLMS--PIKTEQRQPSMMTRMYIEQRDRLYNDN----QVFAKYNVSRL 134

Query: 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA 311
                +R Q+L +L+       L+DG+L                G GK            
Sbjct: 135 QPYLKLR-QALLELRP--AKNVLIDGVL----------------GSGK-----------T 164

Query: 312 SMTNGGCEPDSY-CFFMFTYFLCQGGEYETA-------LKVCRASMAKGWVPHFSTMKSL 363
            +    C      C   F  F        +         K+    +   W        ++
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNI 223

Query: 364 VTGLASISKVAEANELIGLMK-KRFPKS----GDMWNA 396
              + SI       EL  L+K K +        ++ NA
Sbjct: 224 KLRIHSIQ-----AELRRLLKSKPYENCLLVLLNVQNA 256

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 67.9 bits (164), Expect = 2e-12
 Identities = 20/191 (10%), Positives = 53/191 (27%), Gaps = 3/191 (1%)

Query: 135 EEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF--PKVYGIEPNSETYNKVIKSF 192
            +  +  L      L A    C+L+        +       +        + YN V+  +
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175

Query: 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY-EDVGKVLQMMEKCGIASG 251
              G    +  +L  ++   + P+   +   L    ++ +    + + L+ M + G+   
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235

Query: 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA 311
                + +    +    +    +          P       L+     +       KL  
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295

Query: 312 SMTNGGCEPDS 322
            +    C  + 
Sbjct: 296 PLKTLQCLFEK 306

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 59.8 bits (143), Expect = 8e-10
 Identities = 18/180 (10%), Positives = 53/180 (29%), Gaps = 4/180 (2%)

Query: 180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV 239
           P  E   ++++            +   +  +  +                  +      +
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 240 LQM---MEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
           L +     +      +++YN  +    +    +E   +L  +   G+ P+L +Y   +  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 297 FGKEGNLEGA-KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355
            G++    G  ++    M+  G +  +    +      +    +   KV         +P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	401
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.73
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.7
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.7
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.68
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.68
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.68
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.68
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.67
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.67
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.66
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.64
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.6
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.59
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.58
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.52
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.51
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.5
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.5
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.48
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.41
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.4
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.37
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.37
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.36
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.35
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.33
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.32
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.31
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.31
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.25
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.2
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.19
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.18
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.18
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.17
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.16
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.09
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.08
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.06
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.06
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.05
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.03
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.01
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.0
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.97
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.97
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.96
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.93
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.88
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.85
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.84
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.82
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.76
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.75
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.75
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.73
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.72
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.72
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.71
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.71
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.7
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.69
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.67
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.66
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.65
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.64
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.64
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.61
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.61
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.6
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.53
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.51
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.5
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.48
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.48
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.47
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.44
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.4
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.4
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.38
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.35
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.33
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.33
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.31
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.3
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.3
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.28
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.25
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.12
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.12
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.11
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.07
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.93
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.92
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.9
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.88
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.86
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.82
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.77
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.76
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.76
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.75
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.65
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.46
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.2
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.13
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.11
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.11
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.1
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.06
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.03
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.02
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.99
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.87
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.85
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.6
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.5
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.44
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.35
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.32
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.29
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.18
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.1
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.01
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.79
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.49
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.35
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.09
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	95.03
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.8
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.57
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.52
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.27
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.56
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.52
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.37
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.02
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.82
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.77
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.69
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.68
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.58
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.33
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.27
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.89
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	90.51
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	88.57
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	88.44
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.25
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	85.61
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	84.3
2p58_C	116	Putative type III secretion protein YSCG; type III	83.99
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	83.63
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	83.49
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	82.51
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	82.36
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	81.22
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.99
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	80.18

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.4e-33  Score=258.17  Aligned_cols=211  Identities=15%  Similarity=0.132  Sum_probs=98.7

Q ss_pred             HHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015765          131 MQTFEEMDKYGLRQSV-DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMR  209 (401)
Q Consensus       131 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  209 (401)
                      ..+.+++.+.+....+ ..++.+|++|++.|++++|+++|++|.+ .|++||..+|++||.+|++.+...++        
T Consensus        10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~--------   80 (501)
T 4g26_A           10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATES--------   80 (501)
T ss_dssp             --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence            3334444444433332 2345555555555555555555555532 25555555555555555544331000        


Q ss_pred             hCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 015765          210 RKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT  289 (401)
Q Consensus       210 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  289 (401)
                                        .+.++++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus        81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t  142 (501)
T 4g26_A           81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS  142 (501)
T ss_dssp             ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence                              00111344555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015765          290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA  368 (401)
Q Consensus       290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (401)
                      |+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus       143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555555555444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-31  Score=252.24  Aligned_cols=349  Identities=7%  Similarity=-0.087  Sum_probs=234.6

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCC--------------CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-C
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAP--------------ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR-P  105 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~  105 (401)
                      .+...+..+...|++++|+++|+......              +.+.+..+|+.++.++.+.|++++|+++|+++... +
T Consensus       152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  231 (597)
T 2xpi_A          152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA  231 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            44455566666677777777776432221              22445677777777777777777777777777522 1


Q ss_pred             CC--------------------------------------------------------------------CCchhHHHHH
Q 015765          106 DL--------------------------------------------------------------------RQNERFHVHS  117 (401)
Q Consensus       106 ~~--------------------------------------------------------------------~~~~~~~~~l  117 (401)
                      ..                                                                    +.+..++..+
T Consensus       232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l  311 (597)
T 2xpi_A          232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK  311 (597)
T ss_dssp             TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred             hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence            10                                                                    1233344444


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      +.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+.  .+.+..+++.++..|.+.|+
T Consensus       312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~  388 (597)
T 2xpi_A          312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNK  388 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhcc
Confidence            445555555555555555554433 224444555555555555555555555555432  14456677777777888888


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 015765          198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG  277 (401)
Q Consensus       198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  277 (401)
                      +++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++
T Consensus       389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  466 (597)
T 2xpi_A          389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS  466 (597)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888888888776642 3456677788888888888888888888877664 44677788888888888888888888888


Q ss_pred             HHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          278 MLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEPD--SYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       278 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      +.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++++++.+.
T Consensus       467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (597)
T 2xpi_A          467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL  545 (597)
T ss_dssp             HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            77653 236777888888888888888888888887765    55666  567888888888888888888888887776


Q ss_pred             CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          352 GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       352 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      + +.+..+|..+..+|.+.|++++|.++++++.+..|.+...|..
T Consensus       546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  589 (597)
T 2xpi_A          546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL  589 (597)
T ss_dssp             S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence            5 4577788888888888888888888888888877777665543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.3e-33  Score=256.82  Aligned_cols=206  Identities=15%  Similarity=0.213  Sum_probs=148.2

Q ss_pred             HHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 015765           93 AISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN---------YE  163 (401)
Q Consensus        93 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~  163 (401)
                      .+..+.+.+............++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+.         ++
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            355556666644444443667899999999999999999999999999999999999999999998764         56


Q ss_pred             HHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          164 EVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       164 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      .|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus        88 ~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           88 RGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            67777777743 47777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 015765          244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK  299 (401)
Q Consensus       244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  299 (401)
                      .+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            77777777777777777777777777777777777777777777777777776654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.7e-31  Score=250.42  Aligned_cols=352  Identities=9%  Similarity=-0.051  Sum_probs=233.2

Q ss_pred             chhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHH
Q 015765           37 TIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH  116 (401)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  116 (401)
                      +....++..+..+.+.|+++.|+.+|+.+..   ..|+..++..++.+|.+.|++++|..+|+.+...   +.+..++..
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~  155 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYL  155 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHH
Confidence            4455677777777788888888887777652   2234456666666666666666666666665321   233445555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhh-C--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc-----
Q 015765          117 SIVLYGQANMIDHAMQTFEEMDK-Y--------------GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY-----  176 (401)
Q Consensus       117 li~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----  176 (401)
                      ++.+|.+.|++++|.++|+++.. .              +.+.+..+|+.++.+|.+.|++++|.++|+++.+..     
T Consensus       156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  235 (597)
T 2xpi_A          156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE  235 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence            55555555555555555553211 1              112235555555555555555555555555443211     


Q ss_pred             ----------------------------------------------------------------CCCCCHHhHHHHHHHH
Q 015765          177 ----------------------------------------------------------------GIEPNSETYNKVIKSF  192 (401)
Q Consensus       177 ----------------------------------------------------------------~~~~~~~~~~~l~~~~  192 (401)
                                                                                      ..+++..+++.++.+|
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence                                                                            0125666777777777


Q ss_pred             HhcCChhHHHHHHHHHHhCC---------------------------------CCCCHHhHHHHHHHHHccCChHHHHHH
Q 015765          193 CESGDSSSVYSILAEMRRKS---------------------------------IRPNATDFGLLLAGFYKEHKYEDVGKV  239 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~  239 (401)
                      .+.|++++|.++|+++.+.+                                 .+.+..++..++..|.+.|++++|.++
T Consensus       316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  395 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY  395 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence            77777777777777765432                                 123456677777777777777777777


Q ss_pred             HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCC
Q 015765          240 LQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCE  319 (401)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  319 (401)
                      |+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +
T Consensus       396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~  472 (597)
T 2xpi_A          396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q  472 (597)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            77776653 3356677778888888888888888888777764 2366777788888888888888888888877653 3


Q ss_pred             CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765          320 PDSYCFFMFTYFLCQGGEYETALKVCRASMAK----GWVPH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDM  393 (401)
Q Consensus       320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  393 (401)
                      .+..+|..++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++++++.+..|.+..+
T Consensus       473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  552 (597)
T 2xpi_A          473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV  552 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence            46777888888888888888888888887776    55666  6788888888888888888888888888877777777


Q ss_pred             chhc
Q 015765          394 WNAA  397 (401)
Q Consensus       394 ~~~l  397 (401)
                      |..+
T Consensus       553 ~~~l  556 (597)
T 2xpi_A          553 HTAI  556 (597)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=6.6e-27  Score=209.96  Aligned_cols=343  Identities=10%  Similarity=-0.028  Sum_probs=296.4

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY  121 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  121 (401)
                      .......+...++.++|...++.+...  .|.+...|..+...+.+.|++++|++.|+++....  |.+...+..+..++
T Consensus        36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~  111 (388)
T 1w3b_A           36 LLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAAL  111 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHH
Confidence            334456677888999999999877654  44578899999999999999999999999988432  34466889999999


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHH
Q 015765          122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSV  201 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  201 (401)
                      .+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..  +.+..+|..+...+.+.|++++|
T Consensus       112 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A  188 (388)
T 1w3b_A          112 VAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLA  188 (388)
T ss_dssp             HHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999998875 4456778888899999999999999999997652  44577899999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      .+.|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+..++.+.|++++|...|+++.+.
T Consensus       189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999998864 4467789999999999999999999999998864 446788999999999999999999999999987


Q ss_pred             CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 015765          282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMK  361 (401)
Q Consensus       282 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  361 (401)
                      +. .+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++.
T Consensus       267 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  343 (388)
T 1w3b_A          267 QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHS  343 (388)
T ss_dssp             CS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred             CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence            43 257889999999999999999999999999763 5578899999999999999999999999998764 55688999


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          362 SLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       362 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      .+..+|.+.|++++|.+.++++.+..|.+...|..
T Consensus       344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~  378 (388)
T 1w3b_A          344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHh
Confidence            99999999999999999999999988888776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=3.1e-26  Score=205.60  Aligned_cols=338  Identities=10%  Similarity=0.006  Sum_probs=292.3

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM  126 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  126 (401)
                      ..+-+.|++++|++.+..+...  .|.+...+..+...+...|++++|...++......  |.+...+..+...|.+.|+
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCC
Confidence            3455678899999999887644  33466778888899999999999999999887432  4457789999999999999


Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHH
Q 015765          127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSIL  205 (401)
Q Consensus       127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~  205 (401)
                      +++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.   .|+ ...+..+...+...|++++|.+.|
T Consensus        83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~  158 (388)
T 1w3b_A           83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACY  158 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence            999999999998875 556778999999999999999999999999865   444 556778888899999999999999


Q ss_pred             HHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 015765          206 AEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP  285 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  285 (401)
                      +++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++...... .
T Consensus       159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~  235 (388)
T 1w3b_A          159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N  235 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-C
Confidence            9998763 4467889999999999999999999999999875 44677889999999999999999999999988642 2


Q ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015765          286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT  365 (401)
Q Consensus       286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  365 (401)
                      +..++..+...|...|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+..
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  313 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN  313 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence            57889999999999999999999999999864 3356789999999999999999999999999875 668899999999


Q ss_pred             HHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765          366 GLASISKVAEANELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       366 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  397 (401)
                      .+.+.|++++|.+.++++.+..|.+...|..+
T Consensus       314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T 1w3b_A          314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            99999999999999999999988887776654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=2.7e-24  Score=196.77  Aligned_cols=314  Identities=12%  Similarity=0.050  Sum_probs=249.2

Q ss_pred             CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015765           71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN  150 (401)
Q Consensus        71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  150 (401)
                      .|.+...+..+...+.+.|++++|+.+|+.+...  .+.+...+..+..+|...|++++|...|+++.+.+ +.+..++.
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~   98 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL   98 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence            3447778888888999999999999999888743  23346788888888899999999999999888876 55678888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH----HhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCC
Q 015765          151 ALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS----ETYNKV------------IKSFCESGDSSSVYSILAEMRRKSIR  214 (401)
Q Consensus       151 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~  214 (401)
                      .+..+|.+.|++++|.+.|+++.+.   .|+.    ..+..+            ...+.+.|++++|.+.|+++.+.. +
T Consensus        99 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~  174 (450)
T 2y4t_A           99 QRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-V  174 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            8888999999999999999888643   4443    445444            344788899999999999887753 4


Q ss_pred             CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH-
Q 015765          215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL-  293 (401)
Q Consensus       215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-  293 (401)
                      .+...+..+..+|.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++..... .+...+..+ 
T Consensus       175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~  252 (450)
T 2y4t_A          175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYK  252 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHH
Confidence            577788888899999999999999998887763 44678888889999999999999999998887532 234444444 


Q ss_pred             -----------HHHHhcCCChHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 015765          294 -----------IHGFGKEGNLEGAKKLFASMTNGGCEPD-----SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF  357 (401)
Q Consensus       294 -----------i~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  357 (401)
                                 ...|...|++++|.++|+++.+.  .|+     ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~  329 (450)
T 2y4t_A          253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV  329 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence                       77888889999999999998874  344     3467888888999999999999999888764 4567


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      ..+..+..+|...|++++|.+.++++.+..|.+...|..
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  368 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG  368 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence            888899999999999999999999998888877766544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=4.3e-23  Score=188.75  Aligned_cols=337  Identities=13%  Similarity=0.083  Sum_probs=274.0

Q ss_pred             hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHH
Q 015765           39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSI  118 (401)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  118 (401)
                      ...+......+...|+++.|+..|+.+...  .+.+...|..+..++...|++++|+..|+++....  +.+...+..+.
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~  101 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence            345666677888899999999999988754  34478899999999999999999999999998432  33467899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHhchhhcCCCCCHH
Q 015765          119 VLYGQANMIDHAMQTFEEMDKYGLRQSV---DALNALL------------LGCILSKNYEEVKRIFTEFPKVYGIEPNSE  183 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  183 (401)
                      .+|.+.|++++|.+.|+++.+.+ +.+.   ..+..+.            ..+...|++++|+..|+++.+..  +.+..
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~  178 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAE  178 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH
Confidence            99999999999999999999875 3344   5665553            44889999999999999997653  55778


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH-----
Q 015765          184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR-----  258 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----  258 (401)
                      ++..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+     
T Consensus       179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~  256 (450)
T 2y4t_A          179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK  256 (450)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence            89999999999999999999999998763 4578899999999999999999999999998764 3344445444     


Q ss_pred             -------HHHHHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHH
Q 015765          259 -------IQSLCKLKRSEEAKALLDGMLSRGIKPN-----LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFF  326 (401)
Q Consensus       259 -------l~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  326 (401)
                             ...+.+.|++++|...|+++.+..  |+     ...|..+...+.+.|++++|.+.++++.+.. +.+...|.
T Consensus       257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~  333 (450)
T 2y4t_A          257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK  333 (450)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence                   788999999999999999998863  34     4578888999999999999999999998753 34678999


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH------------HHHccC-----CHHHHHHHHHH-HHhcCC
Q 015765          327 MFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT------------GLASIS-----KVAEANELIGL-MKKRFP  388 (401)
Q Consensus       327 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~-~~~~~~  388 (401)
                      .+..+|...|++++|...++++.+.. +-+...+..+..            .|...|     +.+++.+.+++ ..+..|
T Consensus       334 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p  412 (450)
T 2y4t_A          334 DRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP  412 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999764 335566666663            344444     56777888886 344344

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.5e-22  Score=186.76  Aligned_cols=242  Identities=9%  Similarity=0.008  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 015765          147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG  226 (401)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  226 (401)
                      .++..+...+...|++++|...|+++.+.   .|+...+..+...+...|++++|.+.++++.... +.+...+..+...
T Consensus       238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  313 (514)
T 2gw1_A          238 ISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM  313 (514)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence            34555555566666666666666666543   2335556666666666666666666666665542 3345566666666


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHH
Q 015765          227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA  306 (401)
Q Consensus       227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a  306 (401)
                      +...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus       314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  391 (514)
T 2gw1_A          314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA  391 (514)
T ss_dssp             HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence            667777777777777666653 3345566666667777777777777777766542 22445666667777777777777


Q ss_pred             HHHHHHHHhCCC-CCC----HhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 015765          307 KKLFASMTNGGC-EPD----SYCFFMFTYFLCQ---GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE  378 (401)
Q Consensus       307 ~~~~~~m~~~~~-~~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  378 (401)
                      .+.++++.+... .++    ...+..+...+..   .|++++|...++++.+.. +.+..++..+...|.+.|++++|.+
T Consensus       392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  470 (514)
T 2gw1_A          392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT  470 (514)
T ss_dssp             HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence            777777664311 111    2266677777777   777777777777776654 3456667777777777777777777


Q ss_pred             HHHHHHhcCCCCcccch
Q 015765          379 LIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       379 ~~~~~~~~~~~~~~~~~  395 (401)
                      .+++..+..|.+...+.
T Consensus       471 ~~~~a~~~~~~~~~~~~  487 (514)
T 2gw1_A          471 LFEESADLARTMEEKLQ  487 (514)
T ss_dssp             HHHHHHHHCSSHHHHHH
T ss_pred             HHHHHHHhccccHHHHH
Confidence            77777777666655554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=2.7e-21  Score=171.08  Aligned_cols=312  Identities=11%  Similarity=0.038  Sum_probs=249.1

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +...+..+...+...|++++|+..|+++....  |.+...+..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence            45677788888899999999999999887432  3346688888888999999999999999988765 45678888888


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCC----CHHhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEP----NSETYNKV------------IKSFCESGDSSSVYSILAEMRRKSIRPNA  217 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  217 (401)
                      .++...|++++|...|++..+.   .|    +...+..+            ...+...|++++|.+.++++.+.. +.+.
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~  154 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA  154 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch
Confidence            8999999999999999988643   45    33344444            577888999999999999988763 4567


Q ss_pred             HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH------
Q 015765          218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK------  291 (401)
Q Consensus       218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~------  291 (401)
                      ..+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+.... +...+.      
T Consensus       155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~  232 (359)
T 3ieg_A          155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK  232 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH
Confidence            888888999999999999999999988864 456788888999999999999999999998876322 333332      


Q ss_pred             ------HHHHHHhcCCChHHHHHHHHHHHhCCCCCC-H----hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 015765          292 ------HLIHGFGKEGNLEGAKKLFASMTNGGCEPD-S----YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM  360 (401)
Q Consensus       292 ------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  360 (401)
                            .+...+.+.|++++|.+.++++.+..  |+ .    ..+..+...+...|++++|...++++.+.. +.+..++
T Consensus       233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  309 (359)
T 3ieg_A          233 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL  309 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence                  23566888999999999999988753  33 2    234557788899999999999999998864 4578889


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765          361 KSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       361 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  397 (401)
                      ..+...|...|++++|.+.++++.+..|.+...+..+
T Consensus       310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  346 (359)
T 3ieg_A          310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            9999999999999999999999999888887766543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=1.7e-20  Score=175.41  Aligned_cols=345  Identities=10%  Similarity=0.036  Sum_probs=248.0

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS  117 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  117 (401)
                      ....+......+...|+++.|++.|+.+...  .|.+...|..+..++.+.|++++|++.++++....  |.+...+..+
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l   99 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRR   99 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHH
Confidence            3445566667888889999999999988754  34477899999999999999999999999988432  3456788888


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhC---------------------------------------------------------
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKY---------------------------------------------------------  140 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~---------------------------------------------------------  140 (401)
                      ..++...|++++|...|+.+...                                                         
T Consensus       100 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          100 ASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            99999999999998877433100                                                         


Q ss_pred             --------------------------------------------------CCCCC--------HHHHHHHHHHHHhcCCH
Q 015765          141 --------------------------------------------------GLRQS--------VDALNALLLGCILSKNY  162 (401)
Q Consensus       141 --------------------------------------------------~~~~~--------~~~~~~l~~~~~~~~~~  162 (401)
                                                                        ...|+        ..++..+...+...|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence                                                              00111        12344445566677777


Q ss_pred             HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 015765          163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM  242 (401)
Q Consensus       163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  242 (401)
                      ++|...|++..+.   .|+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++
T Consensus       260 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          260 LDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            8888888777654   5556677777777778888888888888877653 34567777788888888888888888888


Q ss_pred             HHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC-----
Q 015765          243 MEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG-----  317 (401)
Q Consensus       243 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----  317 (401)
                      +.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..     
T Consensus       336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            77764 3356677778888888888888888888877763 2245677777888888888888888888776532     


Q ss_pred             CCCCHhhHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          318 CEPDSYCFFMFTYFLCQG----------GEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       318 ~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      .......+......+...          |++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.+++..+..
T Consensus       414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            111112234445566666          88888888888887764 4567788888888999999999999999888877


Q ss_pred             CCCccc
Q 015765          388 PKSGDM  393 (401)
Q Consensus       388 ~~~~~~  393 (401)
                      |.+...
T Consensus       493 ~~~~~~  498 (537)
T 3fp2_A          493 RTMDEK  498 (537)
T ss_dssp             --CHHH
T ss_pred             CCcHHH
Confidence            665443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.89  E-value=1.6e-19  Score=159.66  Aligned_cols=316  Identities=12%  Similarity=0.069  Sum_probs=256.6

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      .+......+...|+++.|++.|+.+...  .+.+...+..+...+...|++++|...++.+....  +.+...+..+...
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~   80 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHH
Confidence            4445566778889999999999988654  33467899999999999999999999999988432  3345788999999


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLR---QSVDALNAL------------LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY  185 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  185 (401)
                      +...|++++|...|+++.+.. +   .+...+..+            ...+...|++++|.+.++++.+..  +.+...+
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~  157 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELR  157 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence            999999999999999998864 3   345555555            578889999999999999997653  5567788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHH---------
Q 015765          186 NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYN---------  256 (401)
Q Consensus       186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------  256 (401)
                      ..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+.         
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~  235 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN  235 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence            999999999999999999999998863 5578899999999999999999999999998864 23333333         


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 015765          257 ---IRIQSLCKLKRSEEAKALLDGMLSRGIKPNL----DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFT  329 (401)
Q Consensus       257 ---~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  329 (401)
                         .+...+.+.|++++|...++++.+.... +.    ..+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~  313 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence               2366788999999999999999886432 33    235567788999999999999999998863 34678899999


Q ss_pred             HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015765          330 YFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA  368 (401)
Q Consensus       330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (401)
                      ..+...|++++|.+.++++.+.. +.+...+..+..+..
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            99999999999999999999764 334556666655543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=2.6e-20  Score=162.81  Aligned_cols=295  Identities=7%  Similarity=-0.045  Sum_probs=229.3

Q ss_pred             CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015765           71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN  150 (401)
Q Consensus        71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  150 (401)
                      .+.+...+......+...|++++|+++|+.+....  +.+...+..++..+...|++++|..+++++.+.. +.+...+.
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~   94 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF   94 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence            44566778888888888999999999999887432  2234466677788888899999999999988865 45677888


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765          151 ALLLGCILSK-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK  229 (401)
Q Consensus       151 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (401)
                      .+...+...| ++++|...|++..+..  +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~  171 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL  171 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence            8888888898 8999999999887542  4456778888889999999999999999987763 3355667778888889


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHHHHHHHHHHhcCC
Q 015765          230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG--------IKPNLDTYKHLIHGFGKEG  301 (401)
Q Consensus       230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~~  301 (401)
                      .|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..        ...+..++..+...|...|
T Consensus       172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence            999999999999888764 4466788888888999999999999998887641        1223567888888888999


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHH
Q 015765          302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL-ASISKVA  374 (401)
Q Consensus       302 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  374 (401)
                      ++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+.+
T Consensus       251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            9999999998888753 3356778888888889999999999998887654 44677777777777 4555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2e-20  Score=173.82  Aligned_cols=347  Identities=12%  Similarity=0.043  Sum_probs=284.6

Q ss_pred             HHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHH
Q 015765           40 EKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV  119 (401)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  119 (401)
                      ..+......+...|+++.|+..|..+....   |+...|..+..++.+.|++++|++.++.+....  |.+...+..+..
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~   81 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence            344555677788899999999999987653   478899999999999999999999999988432  445678999999


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCC-------------------------------------------------------
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQ-------------------------------------------------------  144 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------------  144 (401)
                      +|...|++++|...|+++.+.+...                                                       
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999998765210                                                       


Q ss_pred             -----------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHhchh-----hcCC-------CCCHHhHH
Q 015765          145 -----------------------SVDALNALLLGCIL---SKNYEEVKRIFTEFPK-----VYGI-------EPNSETYN  186 (401)
Q Consensus       145 -----------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~  186 (401)
                                             +...+......+..   .|++++|...|+++.+     ....       +.+..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                                   13333333333443   8999999999999876     2111       22345788


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 015765          187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK  266 (401)
Q Consensus       187 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  266 (401)
                      .+...+...|++++|...++++.+..  |+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence            88999999999999999999998864  338888999999999999999999999998874 446788999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 015765          267 RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR  346 (401)
Q Consensus       267 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  346 (401)
                      ++++|...+++..+.... +...+..+...|...|++++|.++++++.+.. +.+...+..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999987533 56789999999999999999999999998753 3356788999999999999999999999


Q ss_pred             HHHHCCC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          347 ASMAKGW-VPH----FSTMKSLVTGLAS---ISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       347 ~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      ++.+... .++    ...+..+...+..   .|++++|.+.++++.+..|.+...|..
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  454 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG  454 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            9887531 111    3488999999999   999999999999999988877766543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.2e-19  Score=158.60  Aligned_cols=278  Identities=9%  Similarity=-0.076  Sum_probs=194.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                      ...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+..  +.+...+..+..
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~   98 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGC   98 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence            4456667777777778888888777777654 4455556666677777777888877777776542  345566777777


Q ss_pred             HHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 015765          191 SFCESG-DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE  269 (401)
Q Consensus       191 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  269 (401)
                      .+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            777777 7777777777776653 3345667777777777778888877777777654 334556666777777777888


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHccCCHHHH
Q 015765          270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG--------CEPDSYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a  341 (401)
                      +|...+++..+.. +.+...+..+...+...|++++|.+.++++.+..        ...+...+..+...+...|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            8887777777663 2356777777777777778887777777766531        122345677777777777888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765          342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      ...++++.+.. +.+...+..+...|.+.|++++|.+.+++..+..|.+...|.
T Consensus       256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  308 (330)
T 3hym_B          256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT  308 (330)
T ss_dssp             HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred             HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence            87777777654 345667777777777778888888777777777766665544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=5.7e-20  Score=163.33  Aligned_cols=295  Identities=9%  Similarity=-0.025  Sum_probs=224.3

Q ss_pred             HHhCCCchHHHH-HHHHhhhC-CCCC-CchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           85 LSQANHFNAISQ-LLEELKTR-PDLR-QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        85 ~~~~~~~~~a~~-~~~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      +...|++++|++ .+++.... +..+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            344578888888 77765522 2111 123456778888889999999999999988875 5678888888899999999


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH---------------HHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL---------------LLAG  226 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~  226 (401)
                      +++|...|+++.+..  +.+..++..+...+...|++++|.+.++++..... .+...+..               .+..
T Consensus       114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHH
T ss_pred             HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            999999999887653  45677888888999999999999999999887642 22222221               2344


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH
Q 015765          227 FYKEHKYEDVGKVLQMMEKCGIAS-GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG  305 (401)
Q Consensus       227 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  305 (401)
                      +...|++++|...++++.+..... +..++..+..++...|++++|...|+++.+.. +.+..+|..+...+...|++++
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence            448899999999999998864221 47788999999999999999999999998863 3367889999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHccCCHHH
Q 015765          306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV----------PHFSTMKSLVTGLASISKVAE  375 (401)
Q Consensus       306 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~  375 (401)
                      |.+.++++.+.. +.+...+..+...|.+.|++++|...++++.+....          ....+|..+..+|...|++++
T Consensus       270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            999999998753 345778999999999999999999999998875311          126889999999999999999


Q ss_pred             HHHHHHHHHh
Q 015765          376 ANELIGLMKK  385 (401)
Q Consensus       376 a~~~~~~~~~  385 (401)
                      |..++++..+
T Consensus       349 A~~~~~~~l~  358 (368)
T 1fch_A          349 YGAADARDLS  358 (368)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHhHHHHHH
Confidence            9998775443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.86  E-value=7.7e-19  Score=164.16  Aligned_cols=305  Identities=10%  Similarity=0.027  Sum_probs=170.6

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      ....|..+...+.+.|++++|++.|+++....  |.+...+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la  100 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence            34678888999999999999999999998432  4456789999999999999999999999999876 56788999999


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcC-----------------------------------CCCCHH---------------
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYG-----------------------------------IEPNSE---------------  183 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------~~~~~~---------------  183 (401)
                      .++...|++++|...|+.+.....                                   ..|+..               
T Consensus       101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV  180 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence            999999999999988853311000                                   000000               


Q ss_pred             ---------------hHHHHHHHHH--------hcCChhHHHHHHHHHHhCCCCCC-------HHhHHHHHHHHHccCCh
Q 015765          184 ---------------TYNKVIKSFC--------ESGDSSSVYSILAEMRRKSIRPN-------ATDFGLLLAGFYKEHKY  233 (401)
Q Consensus       184 ---------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~  233 (401)
                                     ....+...+.        ..|++++|..+++++.+.. +.+       ..++..+...+...|++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence                           0000000000        0124455555555554432 111       11233444444455555


Q ss_pred             HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765          234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM  313 (401)
Q Consensus       234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m  313 (401)
                      ++|...++.+.+..  |+...+..+...+...|++++|...++++.+... .+..+|..+...+...|++++|.+.++++
T Consensus       260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            55555555554432  2244444455555555555555555555544321 13444555555555555555555555555


Q ss_pred             HhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      .+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus       337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            4432 1223444445555555555555555555554442 2334444455555555555555555555554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=3.2e-19  Score=158.52  Aligned_cols=290  Identities=11%  Similarity=-0.039  Sum_probs=229.1

Q ss_pred             cCCChhHHHH-HhhhccCCCCCCc--cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCCh
Q 015765           51 SESNPFRILD-ICCGASLAPESPL--DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMI  127 (401)
Q Consensus        51 ~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  127 (401)
                      ..++++.|++ .+.......+..|  +...+..+...+.+.|++++|+..|+++....  +.+...+..+..++...|++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence            4467888888 7776543222222  35678889999999999999999999998543  44577899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH---------------HHHHH
Q 015765          128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK---------------VIKSF  192 (401)
Q Consensus       128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~  192 (401)
                      ++|...|+++.+.. +.+..++..+...+...|++++|...++++.+..  +.+...+..               .+..+
T Consensus       115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            99999999999876 5688999999999999999999999999997642  222222221               23444


Q ss_pred             HhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015765          193 CESGDSSSVYSILAEMRRKSIR-PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA  271 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  271 (401)
                      ...|++++|...|+++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence            4889999999999999876322 157889999999999999999999999998874 44678899999999999999999


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC----------CHhhHHHHHHHHHccCCHHHH
Q 015765          272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP----------DSYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----------~~~~~~~li~~~~~~g~~~~a  341 (401)
                      ...|+++.+.. +.+...+..+..+|.+.|++++|.+.|+++.+.....          ...+|..+..+|...|+.++|
T Consensus       271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999998864 3367889999999999999999999999988642111          257899999999999999999


Q ss_pred             HHHHHH
Q 015765          342 LKVCRA  347 (401)
Q Consensus       342 ~~~~~~  347 (401)
                      ..++++
T Consensus       350 ~~~~~~  355 (368)
T 1fch_A          350 GAADAR  355 (368)
T ss_dssp             HHHHTT
T ss_pred             HHhHHH
Confidence            998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.84  E-value=3.3e-19  Score=155.58  Aligned_cols=282  Identities=7%  Similarity=-0.019  Sum_probs=174.9

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +...+......+...|++++|..+|+++....  +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   96 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA   96 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence            33445556666666666666666666665321  2234555666666666666666666666666553 34555666666


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH-HH-HHHcc
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLL-LA-GFYKE  230 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~-~~~~~  230 (401)
                      ..+...|++++|.+.++++.+.   .|+ ...+..+...                      .|+......+ .. .+...
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~  151 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLS---QPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAP  151 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHT---STTTTTC------------------------------------------CCTTSH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHc
Confidence            6666666666666666666543   222 1112111000                      0011111111 11 25666


Q ss_pred             CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHH
Q 015765          231 HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF  310 (401)
Q Consensus       231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~  310 (401)
                      |++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+
T Consensus       152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77777777777777654 3356677777777788888888888888777653 225677777788888888888888888


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCCHHHHHHH
Q 015765          311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP-----------HFSTMKSLVTGLASISKVAEANEL  379 (401)
Q Consensus       311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~  379 (401)
                      +++.+.. +.+...+..+...+...|++++|.+.++++.+.....           +...+..+..++.+.|++++|..+
T Consensus       230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  308 (327)
T 3cv0_A          230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT  308 (327)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            8877653 3356677778888888888888888888777653111           366778888888888888888888


Q ss_pred             HHHHHhc
Q 015765          380 IGLMKKR  386 (401)
Q Consensus       380 ~~~~~~~  386 (401)
                      +++..+.
T Consensus       309 ~~~~l~~  315 (327)
T 3cv0_A          309 YAQNVEP  315 (327)
T ss_dssp             TTCCSHH
T ss_pred             HHHHHHh
Confidence            7765544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=8.1e-19  Score=155.82  Aligned_cols=267  Identities=7%  Similarity=-0.084  Sum_probs=208.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                      ...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|+..|++..+..  +.+..++..+..
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~  141 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV  141 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence            3457777888888899999999998888765 5578888888888889999999999998887653  445778888888


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCC----------HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CchhHHHHH
Q 015765          191 SFCESGDSSSVYSILAEMRRKSIRPN----------ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS-GVNVYNIRI  259 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll  259 (401)
                      .|...|++++|.+.|+++.+.. +.+          ...+..+...+...|++++|...++++.+..... +..++..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            8999999999999998887642 111          2223345778889999999999999998874221 577889999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 015765          260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE  339 (401)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  339 (401)
                      ..+...|++++|...|++..+.. +.+..+|..+..+|...|++++|.+.|+++.+.. +.+...+..+..+|...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            99999999999999999998874 3367899999999999999999999999998763 334778999999999999999


Q ss_pred             HHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          340 TALKVCRASMAKGWV-----------PHFSTMKSLVTGLASISKVAEANELIGLM  383 (401)
Q Consensus       340 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  383 (401)
                      +|...++++.+....           .+..++..+..++...|+.+.+.++.++-
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            999999998875211           13678899999999999999888876653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=2.2e-18  Score=147.56  Aligned_cols=252  Identities=7%  Similarity=0.020  Sum_probs=144.2

Q ss_pred             HHHHhCCCchHHHHHHHHhhhCCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           83 SKLSQANHFNAISQLLEELKTRPDLRQN-ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      +.....|+++.|+..++.....  .|.+ ......+.++|...|+++.|+..++..    -+|+..++..+...+...++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence            4445566777777666654311  1111 123344556666677776666655431    14555666666666666666


Q ss_pred             HHHHHHHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL  240 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  240 (401)
                      .++|++.++++... +..| +...+..+...+.+.|++++|++.+++      +.+...+..++..+.+.|++++|.+.+
T Consensus        81 ~~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           81 RDAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             HHHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            77777776666433 2223 344455555666666777777766665      345566666666666677777777777


Q ss_pred             HHHHHcCCCCCchhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015765          241 QMMEKCGIASGVNVY---NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG  317 (401)
Q Consensus       241 ~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  317 (401)
                      +.+.+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+++..+..
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            6666653  332211   112233334466666666666666652 3355666666666666666666666666666542


Q ss_pred             CCCCHhhHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 015765          318 CEPDSYCFFMFTYFLCQGGEYET-ALKVCRASMAK  351 (401)
Q Consensus       318 ~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~  351 (401)
                       +-+..++..++..+...|+.++ +.++++++.+.
T Consensus       231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence             2345566666666666666644 45666666654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=1.4e-18  Score=154.35  Aligned_cols=266  Identities=12%  Similarity=-0.008  Sum_probs=218.6

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +...|..+...+.+.|++++|++.|+++....  |.+...+..+...|...|++++|+..|+++.+.. +.+..++..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            45568889999999999999999999998432  3447789999999999999999999999999875 56789999999


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCCH-----------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHH
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPNS-----------ETYNKVIKSFCESGDSSSVYSILAEMRRKSIR-PNATDFG  221 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~  221 (401)
                      .+|...|++++|...|+++.+.   .|+.           ..+..+...+.+.|++++|.+.|+++.+.... .+..++.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  217 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT  217 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence            9999999999999999999764   3332           22334578889999999999999999886422 2688999


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765          222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG  301 (401)
Q Consensus       222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~  301 (401)
                      .+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|++..+.. +.+..++..+..+|...|
T Consensus       218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            99999999999999999999998874 4567899999999999999999999999998874 235888999999999999


Q ss_pred             ChHHHHHHHHHHHhCCC---C--------CCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          302 NLEGAKKLFASMTNGGC---E--------PDSYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       302 ~~~~a~~~~~~m~~~~~---~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      ++++|.+.|+++.+...   .        .+...|..+..++...|+.+.+.++..+
T Consensus       296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999999886421   1        1357889999999999999999887764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=2.9e-18  Score=149.55  Aligned_cols=279  Identities=10%  Similarity=0.008  Sum_probs=177.4

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS  117 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  117 (401)
                      ....+......+...+++++|+..++.+...  .+.+...+..+...+...|++++|.+.++++....  +.+...+..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l   95 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAAL   95 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHH
Confidence            3344555567778889999999999988754  34477889999999999999999999999988442  3446788899


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH--HHHhc
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK--SFCES  195 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~  195 (401)
                      ...|...|++++|.+.++++.+.. +.+...+..+...                       .|+......+..  .+...
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~  151 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAP  151 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC-------------------------------------------CCTTSH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHc
Confidence            999999999999999999998864 2233333322100                       011111111111  13444


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL  275 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  275 (401)
                      |++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus       152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            55555555555555442 2245555555566666666666666666655543 234555666666666667777777766


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHccCCHHHHHHH
Q 015765          276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP-----------DSYCFFMFTYFLCQGGEYETALKV  344 (401)
Q Consensus       276 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~  344 (401)
                      +++.+.. +.+...+..+...|...|++++|.+.++++.+.....           +...+..+..++...|++++|..+
T Consensus       230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  308 (327)
T 3cv0_A          230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT  308 (327)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            6666543 2245666667777777777777777777666542111           355677777777777777777777


Q ss_pred             HHH
Q 015765          345 CRA  347 (401)
Q Consensus       345 ~~~  347 (401)
                      +++
T Consensus       309 ~~~  311 (327)
T 3cv0_A          309 YAQ  311 (327)
T ss_dssp             TTC
T ss_pred             HHH
Confidence            654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.81  E-value=7.5e-20  Score=172.92  Aligned_cols=114  Identities=11%  Similarity=0.116  Sum_probs=59.6

Q ss_pred             HhHHHHHHHHHccCChHHHHHHHHHHH---HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015765          218 TDFGLLLAGFYKEHKYEDVGKVLQMME---KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI  294 (401)
Q Consensus       218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li  294 (401)
                      .||+++|++|++.|++++|.++|++|.   ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI  207 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL  207 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            345555555555555555555554443   23445555555555555555555555555555555555555555555555


Q ss_pred             HHHhcCCCh-HHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765          295 HGFGKEGNL-EGAKKLFASMTNGGCEPDSYCFFMFTYF  331 (401)
Q Consensus       295 ~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~  331 (401)
                      .++++.|+. ++|.++|++|.+.|+.||..+|+.++..
T Consensus       208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~  245 (1134)
T 3spa_A          208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE  245 (1134)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence            555555542 4455555555555555555555555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.80  E-value=3.7e-20  Score=174.95  Aligned_cols=120  Identities=12%  Similarity=0.078  Sum_probs=112.1

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 015765          251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLS---RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM  327 (401)
Q Consensus       251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  327 (401)
                      -..+||++|.+||+.|++++|.++|++|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            457899999999999999999999988764   48999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015765          328 FTYFLCQGGE-YETALKVCRASMAKGWVPHFSTMKSLVTGLASI  370 (401)
Q Consensus       328 li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  370 (401)
                      +|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~  249 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA  249 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence            9999999998 578999999999999999999999998766554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.80  E-value=5.1e-15  Score=136.67  Aligned_cols=309  Identities=10%  Similarity=0.026  Sum_probs=173.8

Q ss_pred             CCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHh----CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh----
Q 015765           52 ESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQ----ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ----  123 (401)
Q Consensus        52 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----  123 (401)
                      .+++++|++.|+.+....    +...+..+...+..    .+++++|.+.|++....+    +...+..+...|..    
T Consensus        56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~  127 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGV  127 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSS
T ss_pred             CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCC
Confidence            667777777777665432    34566666666666    677777777777766432    23445556666665    


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----c
Q 015765          124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----S  195 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  195 (401)
                      .+++++|...|++..+.|   +...+..+...|..    .++.++|++.|++..+.    .+...+..+...|..    .
T Consensus       128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~  200 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLGYMYSRGLGVE  200 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCC
Confidence            566777777777666654   44555555555555    55666666666665432    244555555555555    5


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCC----------------------
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK----EHKYEDVGKVLQMMEKCGIA----------------------  249 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~----------------------  249 (401)
                      ++.++|.++|++..+.|   +...+..+...|..    .+++++|...|++..+.+..                      
T Consensus       201 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~  277 (490)
T 2xm6_A          201 RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLK  277 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred             cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH
Confidence            55566666655555443   33334444444433    34444444444444433210                      


Q ss_pred             -----------CCchhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC---ChHHHHHHH
Q 015765          250 -----------SGVNVYNIRIQSLCKL-----KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG---NLEGAKKLF  310 (401)
Q Consensus       250 -----------~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~  310 (401)
                                 -+...+..+...|...     +++++|...|++..+.|   +...+..+...|...|   ++++|.++|
T Consensus       278 A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~  354 (490)
T 2xm6_A          278 ALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWF  354 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence                       1223344444444444     55555555555555543   3344444555544434   555666666


Q ss_pred             HHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHH
Q 015765          311 ASMTNGGCEPDSYCFFMFTYFLCQ----GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS----ISKVAEANELIGL  382 (401)
Q Consensus       311 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~  382 (401)
                      ++..+.|   +...+..+...|..    .+++++|.+.+++..+.+   +...+..+...|.+    .+++++|...|++
T Consensus       355 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  428 (490)
T 2xm6_A          355 RKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT  428 (490)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            6665542   44555566666665    567777777777766654   35566666666665    6677777777777


Q ss_pred             HHhcC
Q 015765          383 MKKRF  387 (401)
Q Consensus       383 ~~~~~  387 (401)
                      ..+..
T Consensus       429 A~~~~  433 (490)
T 2xm6_A          429 ASTND  433 (490)
T ss_dssp             HHHHH
T ss_pred             HHHCC
Confidence            66654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=9.3e-17  Score=137.40  Aligned_cols=253  Identities=14%  Similarity=0.133  Sum_probs=120.3

Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          122 GQANMIDHAMQTFEEMDKYGLRQSV--DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      ...|++..|+..++.....  .|+.  .....+..+|...|+++.|+..++..     -+|+..++..+...+...++.+
T Consensus        10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHH
Confidence            3445555555555544332  1221  23333445555555555555444331     1344445555555555555555


Q ss_pred             HHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015765          200 SVYSILAEMRRKSIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGM  278 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  278 (401)
                      +|++.++++...+..| +...+..+...+...|++++|++.+++      +.+...+..+...+.+.|++++|.+.|+++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5555555555443222 233344444555555555555555544      234445555555555555555555555555


Q ss_pred             HHCCCCcCHHHH---HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015765          279 LSRGIKPNLDTY---KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP  355 (401)
Q Consensus       279 ~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~  355 (401)
                      .+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +.
T Consensus       157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~  232 (291)
T 3mkr_A          157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG  232 (291)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            5442  221111   112222333455555555555555441 3344455555555555555555555555555443 33


Q ss_pred             CHHHHHHHHHHHHccCCHHH-HHHHHHHHHhcCCCCc
Q 015765          356 HFSTMKSLVTGLASISKVAE-ANELIGLMKKRFPKSG  391 (401)
Q Consensus       356 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~  391 (401)
                      +..++..++..+...|+.++ +.++++++.+..|.++
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            44455555555555555543 3455555555555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.79  E-value=3.1e-18  Score=150.15  Aligned_cols=287  Identities=9%  Similarity=0.033  Sum_probs=134.4

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM  126 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  126 (401)
                      .++...++.++|.++++...       +..+|..++.++.+.|++++|++.|.+.       +|...|..++..+...|+
T Consensus        11 ~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~   76 (449)
T 1b89_A           11 VLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGN   76 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCC
Confidence            34567778999999998872       2348999999999999999999999663       234578889999999999


Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 015765          127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILA  206 (401)
Q Consensus       127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  206 (401)
                      +++|++.++...+.  .+++.+.+.++.+|.+.|+++++.++++        .|+..+|+.+...|...|.+++|..+|.
T Consensus        77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~  146 (449)
T 1b89_A           77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYN  146 (449)
T ss_dssp             ----------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999988877664  4567889999999999999999887773        3677799999999999999999999999


Q ss_pred             HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015765          207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN  286 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  286 (401)
                      .+         ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+.     .+
T Consensus       147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~  206 (449)
T 1b89_A          147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH  206 (449)
T ss_dssp             HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred             Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence            76         47999999999999999999999988      267899999999999999999966555422     23


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC------CHHH
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK-GWVP------HFST  359 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~  359 (401)
                      +.-...++..|.+.|.+++|..+++...... .-....|+.+..+|++- ++++.++.++..... +++|      +...
T Consensus       207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~  284 (449)
T 1b89_A          207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL  284 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred             HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4445578999999999999999999998654 44566777777777654 344444444433222 3333      4567


Q ss_pred             HHHHHHHHHccCCHHHHHHH
Q 015765          360 MKSLVTGLASISKVAEANEL  379 (401)
Q Consensus       360 ~~~l~~~~~~~g~~~~a~~~  379 (401)
                      |.-++..|.+.++++.|...
T Consensus       285 w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          285 WAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhhchHHHHHHH
Confidence            88899999999999988764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=2.3e-14  Score=132.24  Aligned_cols=287  Identities=10%  Similarity=0.000  Sum_probs=212.7

Q ss_pred             cHhHHHHHHHHHHh----CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCC
Q 015765           74 DRMAFSIAVSKLSQ----ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ----ANMIDHAMQTFEEMDKYGLRQS  145 (401)
Q Consensus        74 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~  145 (401)
                      +...+..+...+..    .+++++|++.|++....+    +...+..+...|..    .+++++|.+.|++..+.|   +
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            56677777777777    899999999999988653    25577888888988    899999999999998865   6


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCH
Q 015765          146 VDALNALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----SGDSSSVYSILAEMRRKSIRPNA  217 (401)
Q Consensus       146 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~  217 (401)
                      ...+..|...|..    .+++++|+..|++..+.    -+...+..+...|..    .+++++|.+.|++..+.|   +.
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~  183 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV  183 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            6778888888888    78999999999998653    367778888888887    789999999999998875   67


Q ss_pred             HhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHH
Q 015765          218 TDFGLLLAGFYK----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDT  289 (401)
Q Consensus       218 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~  289 (401)
                      ..+..+...|..    .++.++|.+.|++..+.+   +...+..+...|..    .+++++|...|++..+.|   +...
T Consensus       184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a  257 (490)
T 2xm6_A          184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA  257 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            888888888887    899999999999998865   45567777777775    678888888888877664   4455


Q ss_pred             HHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 015765          290 YKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG-----GEYETALKVCRASMAKGWVPHFSTM  360 (401)
Q Consensus       290 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~  360 (401)
                      +..+...|..    .+++++|.++|++..+.|   +...+..+...|...     +++++|...+++..+.+   +...+
T Consensus       258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~  331 (490)
T 2xm6_A          258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ  331 (490)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence            5556666655    677777777777776543   334555555555554     56666666666665553   23444


Q ss_pred             HHHHHHHHccC---CHHHHHHHHHHHHhc
Q 015765          361 KSLVTGLASIS---KVAEANELIGLMKKR  386 (401)
Q Consensus       361 ~~l~~~~~~~g---~~~~a~~~~~~~~~~  386 (401)
                      ..+...|...|   ++++|.+.+++..+.
T Consensus       332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence            44555554433   455555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=2.8e-16  Score=131.97  Aligned_cols=227  Identities=12%  Similarity=0.080  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF  192 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  192 (401)
                      .+..+...+...|++++|...|++..+..  .+..++..+..++...|++++|.+.+++..+..   |+           
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~-----------   70 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG---RE-----------   70 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---cc-----------
Confidence            44445555555555555555555555544  344455555555555555555555555544321   11           


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 015765          193 CESGDSSSVYSILAEMRRKSIRPN----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRS  268 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  268 (401)
                                          ..++    ...+..+...+...|++++|...++++.+..  |+       ...+...|++
T Consensus        71 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~  121 (258)
T 3uq3_A           71 --------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNA  121 (258)
T ss_dssp             --------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHH
T ss_pred             --------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHH
Confidence                                0011    2344444444444555555555554444432  22       1234444555


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          269 EEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRAS  348 (401)
Q Consensus       269 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  348 (401)
                      ++|...++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus       122 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          122 EKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            66666666555542 1133455555666666666666666666665542 234555666666666666666666666666


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          349 MAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       349 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      .+.. +.+...+..+..+|.+.|++++|.+.+++..+..
T Consensus       200 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          200 IEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            6553 3345566666666666666666666666666654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=1.2e-15  Score=140.22  Aligned_cols=347  Identities=8%  Similarity=-0.077  Sum_probs=231.0

Q ss_pred             HHHHHHHHHHhcCCChhHHHHHhhhccC-------CCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh------CCC
Q 015765           40 EKKRATIARLKSESNPFRILDICCGASL-------APESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT------RPD  106 (401)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~  106 (401)
                      ..++..-.+....|+.++|++.|+.+..       ....+....+|..+..++...|++++|...+++...      .+.
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            3455566777888999999998876531       111333567899999999999999999999988762      111


Q ss_pred             CCCchhHHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHhchhhcCCCCC
Q 015765          107 LRQNERFHVHSIVLYGQ--ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGC---ILSKNYEEVKRIFTEFPKVYGIEPN  181 (401)
Q Consensus       107 ~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~  181 (401)
                      .+....++.....++..  .+++++|+..|++..+.. +.+...+..+..++   ...++.++|++.+++..+..  +.+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~  208 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDN  208 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSC
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Ccc
Confidence            22224566655555554  457999999999998875 44566666555543   44577788888888876552  344


Q ss_pred             HHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHH
Q 015765          182 SETYNKVIKSFCE----SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNI  257 (401)
Q Consensus       182 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  257 (401)
                      ..++..+...+..    .+++++|.+.+++..... +.+..++..+...+...|++++|...+++..+.. +.+..++..
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~  286 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence            5566666555544    467889999999987763 5567788999999999999999999999998864 335566666


Q ss_pred             HHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015765          258 RIQSLCKL-------------------KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC  318 (401)
Q Consensus       258 ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  318 (401)
                      +..+|...                   +.++.|...+++..+... .+..++..+...|...|++++|.+.|++..+...
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence            66555332                   235677778887776532 2456788889999999999999999999987643


Q ss_pred             CCCHh--hHHHHHH-HHHccCCHHHHHHHHHHHHHCC-----------------------CCCCHHHHHHHHHHHHccCC
Q 015765          319 EPDSY--CFFMFTY-FLCQGGEYETALKVCRASMAKG-----------------------WVPHFSTMKSLVTGLASISK  372 (401)
Q Consensus       319 ~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~  372 (401)
                      .+...  .+..+.. .....|+.++|+..+++..+..                       -+.+..++..+..+|...|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~  445 (472)
T 4g1t_A          366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK  445 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            33221  2223322 2357889999999888876542                       13456788999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcc
Q 015765          373 VAEANELIGLMKKRFPKSGD  392 (401)
Q Consensus       373 ~~~a~~~~~~~~~~~~~~~~  392 (401)
                      +++|++.|++.++..+.++.
T Consensus       446 ~~~A~~~y~kALe~~~~~p~  465 (472)
T 4g1t_A          446 MQQADEDSERGLESGSLIPS  465 (472)
T ss_dssp             CC------------------
T ss_pred             HHHHHHHHHHHHhcCCCCCc
Confidence            99999999999987554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=2.4e-14  Score=133.51  Aligned_cols=340  Identities=7%  Similarity=0.025  Sum_probs=189.3

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL  120 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  120 (401)
                      .+...+.. ...++.++|..+++.+...  .|.+...|...+..+.+.|++++|..+|+.+....  | +...|...+..
T Consensus        15 ~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p-~~~lw~~~~~~   88 (530)
T 2ooe_A           15 AWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L-HIDLWKCYLSY   88 (530)
T ss_dssp             HHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C-CHHHHHHHHHH
T ss_pred             HHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-ChHHHHHHHHH
Confidence            34444443 4466777777777777654  44566677777777777777777777777776332  2 23344443321


Q ss_pred             -HHhcCChHHHHH----HHHHHhh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHhchhh---------
Q 015765          121 -YGQANMIDHAMQ----TFEEMDK-YGLR-QSVDALNALLLGCIL---------SKNYEEVKRIFTEFPKV---------  175 (401)
Q Consensus       121 -~~~~~~~~~a~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~---------  175 (401)
                       ....|+++.|.+    +|+...+ .|.. ++...|...+....+         .|+++.|..+|++..+.         
T Consensus        89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~  168 (530)
T 2ooe_A           89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW  168 (530)
T ss_dssp             HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred             HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence             123344444333    4444332 1222 233444444443332         34455555555554321         


Q ss_pred             ------------------------------------------c-----CCCCC--------HHhHHHHHHHHHhc----C
Q 015765          176 ------------------------------------------Y-----GIEPN--------SETYNKVIKSFCES----G  196 (401)
Q Consensus       176 ------------------------------------------~-----~~~~~--------~~~~~~l~~~~~~~----~  196 (401)
                                                                .     .++|+        ...|...+......    +
T Consensus       169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~  248 (530)
T 2ooe_A          169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE  248 (530)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred             HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence                                                      0     01111        01121111111110    1


Q ss_pred             Ch----hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-------cCChH-------HHHHHHHHHHHcCCCCCchhHHHH
Q 015765          197 DS----SSVYSILAEMRRKSIRPNATDFGLLLAGFYK-------EHKYE-------DVGKVLQMMEKCGIASGVNVYNIR  258 (401)
Q Consensus       197 ~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l  258 (401)
                      +.    +.+..+|++.... .+.+...|..+...+.+       .|+++       +|..++++..+.-.+.+...|..+
T Consensus       249 ~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~  327 (530)
T 2ooe_A          249 DQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY  327 (530)
T ss_dssp             CSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            11    2344455555443 23345556666665554       57765       777777777652223456677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHcc
Q 015765          259 IQSLCKLKRSEEAKALLDGMLSRGIKPN--LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF-LCQG  335 (401)
Q Consensus       259 l~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~  335 (401)
                      +..+.+.|++++|..+|+++.+.  .|+  ...|...+..+.+.|++++|.++|++..+.. +.+...|...+.. +...
T Consensus       328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~  404 (530)
T 2ooe_A          328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS  404 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence            77777778888888888877775  333  2467777777777777888888887777642 1122233222222 2357


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          336 GEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       336 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      |+.++|..+|++..+.. +.+...+..++..+.+.|+.++|..+|++..+..|.++
T Consensus       405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            77888888887777653 34567777777777777888888888888777654443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.73  E-value=1.1e-17  Score=146.63  Aligned_cols=253  Identities=12%  Similarity=0.118  Sum_probs=114.8

Q ss_pred             HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015765           86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV  165 (401)
Q Consensus        86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  165 (401)
                      -+.|++++|.++++++   + .   ..+|..++.++.+.|++++|++.|.+.      +|..+|..++..+...|++++|
T Consensus        14 ~~~~~ld~A~~fae~~---~-~---~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA   80 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC---N-E---PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL   80 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC---C-C---hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence            3678899999999886   2 1   348999999999999999999999653      5777899999999999999999


Q ss_pred             HHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765          166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK  245 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  245 (401)
                      +..++...+.   .++..+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+  
T Consensus        81 i~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           81 VKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--  148 (449)
T ss_dssp             -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred             HHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence            9988777543   5667788999999999999999998885       367789999999999999999999999976  


Q ss_pred             cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH
Q 015765          246 CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF  325 (401)
Q Consensus       246 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  325 (401)
                             ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......     +..++...
T Consensus       149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l  210 (449)
T 1b89_A          149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL  210 (449)
T ss_dssp             -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHH
T ss_pred             -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhH
Confidence                   36999999999999999999999988      2789999999999999999999665543     22344445


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015765          326 FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM  383 (401)
Q Consensus       326 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  383 (401)
                      ..++..|.+.|.+++|..+++...... +-....|+-+..+|++- ++++..+.++..
T Consensus       211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~  266 (449)
T 1b89_A          211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELF  266 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            678999999999999999999988665 55677888888888764 455555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.1e-15  Score=126.62  Aligned_cols=226  Identities=9%  Similarity=0.033  Sum_probs=162.5

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CC----HH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR--QS----VD  147 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~  147 (401)
                      ....|..+...+...|++++|+..|++.....   .+...+..+...|...|++++|...+++..+....  ++    ..
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            45678899999999999999999999998554   44678999999999999999999999998775311  12    57


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 015765          148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGF  227 (401)
Q Consensus       148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  227 (401)
                      ++..+...+...|++++|...|++..+.   .|+.       ..+.+.|++++|.+.++++.... +.+...+..+...+
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~  149 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY  149 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence            8888888999999999999999998764   4553       34555677788888887776642 23445566666677


Q ss_pred             HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHH
Q 015765          228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK  307 (401)
Q Consensus       228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  307 (401)
                      ...|++++|...++++.+.. +.+..++..+..++...|++++|...+++..+.. +.+...|..+..++...|++++|.
T Consensus       150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence            77777777777777776653 3345566666666666666666666666666543 223555666666666666666666


Q ss_pred             HHHHHHHh
Q 015765          308 KLFASMTN  315 (401)
Q Consensus       308 ~~~~~m~~  315 (401)
                      +.+++..+
T Consensus       228 ~~~~~a~~  235 (258)
T 3uq3_A          228 ETLDAART  235 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.72  E-value=2.6e-13  Score=126.57  Aligned_cols=342  Identities=9%  Similarity=-0.005  Sum_probs=237.8

Q ss_pred             hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHH-HhCCCchHHHH----HHHHhhhC-CCCCCchh
Q 015765           39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKL-SQANHFNAISQ----LLEELKTR-PDLRQNER  112 (401)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~~~~~  112 (401)
                      ...+...+......++++.|..+|+.+....   |+...|...+... ...|+++.|.+    +|+..... +..+.+..
T Consensus        46 ~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~  122 (530)
T 2ooe_A           46 GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ  122 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH
Confidence            3456677788888899999999999887652   3555666666433 34566666654    56655422 22233355


Q ss_pred             HHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHH--------------------------------
Q 015765          113 FHVHSIVLYGQ---------ANMIDHAMQTFEEMDKYGLRQSVDALNA--------------------------------  151 (401)
Q Consensus       113 ~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------------  151 (401)
                      +|...+....+         .|+++.|..+|++.++.........|..                                
T Consensus       123 ~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~  202 (530)
T 2ooe_A          123 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAK  202 (530)
T ss_dssp             HHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHH
Confidence            66666655443         5677777777777766211111122221                                


Q ss_pred             ---------------------------------HHHHHHhc----CCH----HHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          152 ---------------------------------LLLGCILS----KNY----EEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       152 ---------------------------------l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                                                       .+......    ++.    +.+..+|++.....  +.+...|...+.
T Consensus       203 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~  280 (530)
T 2ooe_A          203 EYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQ  280 (530)
T ss_dssp             HHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence                                             11111000    111    24455666665542  445667777777


Q ss_pred             HHHh-------cCChh-------HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc--hh
Q 015765          191 SFCE-------SGDSS-------SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV--NV  254 (401)
Q Consensus       191 ~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~  254 (401)
                      .+.+       .|+++       +|.++|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.  .|+.  ..
T Consensus       281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~  358 (530)
T 2ooe_A          281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLV  358 (530)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHH
T ss_pred             HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHH
Confidence            7775       69987       89999999986323446888999999999999999999999999985  4442  47


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC  333 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  333 (401)
                      |..++..+.+.|++++|..+|++..+... .+...|...... +...|++++|.++|+..++.. +.+...|..++..+.
T Consensus       359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          359 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence            88899999999999999999999988632 223333332222 346899999999999988753 335788999999999


Q ss_pred             ccCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 015765          334 QGGEYETALKVCRASMAKGW-VP--HFSTMKSLVTGLASISKVAEANELIGLMKKRFPK  389 (401)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  389 (401)
                      +.|+.++|..+|++....+. .|  ....|...+......|+.+.+..+.+++.+.+|.
T Consensus       437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            99999999999999998742 22  2447888888888899999999999999988774

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.72  E-value=5.9e-15  Score=123.57  Aligned_cols=211  Identities=14%  Similarity=0.048  Sum_probs=162.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015765          182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS  261 (401)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  261 (401)
                      ...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            3456677777778888888888888877653 3456777777888888888888888888877764 3356777788888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015765          262 LCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET  340 (401)
Q Consensus       262 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  340 (401)
                      +...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            888888888888888887733334 45677778888888889999998888887753 3356778888888889999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          341 ALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      |..+++++.+.. +.+...+..+...+.+.|++++|.++++++.+..|.+...+..
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999998887754 4567778888888888999999999999998888777665543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=1.7e-15  Score=123.83  Aligned_cols=200  Identities=9%  Similarity=-0.004  Sum_probs=122.4

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 015765          179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR  258 (401)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  258 (401)
                      +++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            3444555555556666666666666666655542 3345555555566666666666666666665543 2344555555


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 015765          259 IQSLCKL-----------KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM  327 (401)
Q Consensus       259 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  327 (401)
                      ..++...           |++++|...|++..+.... +...+..+...+...|++++|.+.|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            5666666           7888888888877775322 46677777777888888888888888877765  66777777


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          328 FTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       328 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      +..+|...|++++|...++++.+.. +.+...+..+..++...|++++|.+.+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            8888888888888888888877764 4466777777888888888888888777654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.72  E-value=2.3e-15  Score=127.65  Aligned_cols=242  Identities=8%  Similarity=-0.039  Sum_probs=130.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHH
Q 015765          150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN--ATDFGLLLAGF  227 (401)
Q Consensus       150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~  227 (401)
                      ......+...|++++|+..|++..+..  +.+...+..+...+...|++++|.+.+++..+.+..++  ...|..+...+
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            334445555555555555555554331  22233555555555555666666665555554221111  22355555566


Q ss_pred             HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHH
Q 015765          228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK  307 (401)
Q Consensus       228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  307 (401)
                      ...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666655543 2344556666666666666666666666655542 223445555552222334666666


Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCHHHHH
Q 015765          308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGE---YETALKVCRASMAKG-WVPH------FSTMKSLVTGLASISKVAEAN  377 (401)
Q Consensus       308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~  377 (401)
                      +.++++.+.. +.+...+..+...+...|+   +++|...++++.+.. -.|+      ...+..+...|...|++++|.
T Consensus       163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6666666542 2224455555555555555   555666666555431 1122      145666666777777777777


Q ss_pred             HHHHHHHhcCCCCcccchh
Q 015765          378 ELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~  396 (401)
                      +.+++..+..|.+...+..
T Consensus       242 ~~~~~al~~~p~~~~a~~~  260 (272)
T 3u4t_A          242 AAWKNILALDPTNKKAIDG  260 (272)
T ss_dssp             HHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHhcCccHHHHHHH
Confidence            7777777777666655443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.71  E-value=5.7e-14  Score=119.18  Aligned_cols=225  Identities=11%  Similarity=-0.036  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765          112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNK  187 (401)
Q Consensus       112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  187 (401)
                      ..+..+...|...|++++|.+.|++..+.   .+...+..+...|..    .+++++|...|++..+.    -+...+..
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~   79 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSNGCHL   79 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHHHHHH
Confidence            34444445555555555555555555542   233444444445555    55555555555554332    13444444


Q ss_pred             HHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 015765          188 VIKSFCE----SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC  263 (401)
Q Consensus       188 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  263 (401)
                      +...|..    .+++++|.+.|++..+.+   +...+                                   ..+...|.
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~-----------------------------------~~lg~~~~  121 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGC-----------------------------------ASLGGIYH  121 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH-----------------------------------HHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHH-----------------------------------HHHHHHHH
Confidence            4444444    455555555555444432   33444                                   44444444


Q ss_pred             h----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-
Q 015765          264 K----LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ-  334 (401)
Q Consensus       264 ~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-  334 (401)
                      .    .+++++|...|++..+.+   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|.. 
T Consensus       122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g  195 (273)
T 1ouv_A          122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG  195 (273)
T ss_dssp             HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence            4    455555555555544443   33344444444444    455555555555555432   23344444555555 


Q ss_pred             ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCC
Q 015765          335 ---GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS----ISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       335 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~  390 (401)
                         .+++++|.+.+++..+.+   +...+..+...|.+    .+++++|.+.+++..+..|++
T Consensus       196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence               555555555555555443   13444455555555    555555555555555554433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.70  E-value=3.9e-15  Score=121.71  Aligned_cols=193  Identities=15%  Similarity=-0.002  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF  192 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  192 (401)
                      .+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..  +.+...+..+...+
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAY   83 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence            34444444444444444444444444433 3334444444444444444444444444444331  22233444444444


Q ss_pred             Hhc-----------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015765          193 CES-----------GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS  261 (401)
Q Consensus       193 ~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  261 (401)
                      .+.           |++++|...|++..+.. +-+...+..+..++...|++++|+..|++..+..  .+...+..+..+
T Consensus        84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~  160 (217)
T 2pl2_A           84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence            444           44444444444444331 2233344444444444444444444444444443  334444444444


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015765          262 LCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS  312 (401)
Q Consensus       262 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  312 (401)
                      +...|++++|...|++..+... .+...+..+...+...|++++|.+.+++
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            4444444444444444444321 1334444444444444444444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.70  E-value=1.4e-14  Score=118.81  Aligned_cols=211  Identities=11%  Similarity=0.039  Sum_probs=140.8

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015765          182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS  261 (401)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  261 (401)
                      ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            3455556666666666666666666665542 3345566666666666677777777776666553 3345566667777


Q ss_pred             HHhc-CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 015765          262 LCKL-KRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE  339 (401)
Q Consensus       262 ~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  339 (401)
                      +... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence            7777 777777777777766322232 4666777777777778888887777777643 234666777777788888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765          340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      +|..+++++.+.....+...+..+...+...|+.+.|..+++.+.+..|.+...+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            88888887776542146666777777777788888888888888777766655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.69  E-value=1.8e-15  Score=128.47  Aligned_cols=221  Identities=12%  Similarity=0.019  Sum_probs=122.4

Q ss_pred             CCCchHHHHHHHHhhhCCC--CCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015765           88 ANHFNAISQLLEELKTRPD--LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV  165 (401)
Q Consensus        88 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  165 (401)
                      .|++++|+..++++.....  .+.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            4566667776666663311  12234556666666666777777777777666654 34566666666666667777777


Q ss_pred             HHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765          166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK  245 (401)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  245 (401)
                      ...|++..+..  +.+..++..+...+.+.|++++|.+.|+++.+.  .|+.......+..+...|++++|...++....
T Consensus        97 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           97 YEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            77776665542  334556666666666666666666666666553  23333333333444555666666666655554


Q ss_pred             cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765          246 CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP---NLDTYKHLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       246 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                      .. +++...+ .++..+...++.++|...+++........   +...+..+...|...|++++|...|++..+
T Consensus       173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  243 (275)
T 1xnf_A          173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  243 (275)
T ss_dssp             HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            42 2222222 24445555555566666665554431110   134455555555555555555555555554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=3.7e-13  Score=123.53  Aligned_cols=309  Identities=11%  Similarity=-0.032  Sum_probs=221.1

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-------CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC-----C
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR-------PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY-----G  141 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~  141 (401)
                      ....|+.+...+...|++++|++.|++....       ...+....+|..+..+|...|++++|...+++..+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4568999999999999999999999887521       112333567889999999999999999999887652     1


Q ss_pred             --CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHH---HHhcCChhHHHHHHHHHHhCCC
Q 015765          142 --LRQSVDALNALLLGCIL--SKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKS---FCESGDSSSVYSILAEMRRKSI  213 (401)
Q Consensus       142 --~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~  213 (401)
                        ......++..+..++..  .+++++|++.|++..+.   .|+ ...+..+...   +...++.++|++.+++..+.. 
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-  205 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-  205 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence              11235666666555554  45799999999999765   444 4444444444   345678889999999887753 


Q ss_pred             CCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 015765          214 RPNATDFGLLLAGFYK----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT  289 (401)
Q Consensus       214 ~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~  289 (401)
                      +.+...+..+...+..    .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.... +..+
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~  283 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL  283 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence            3355666655554443    467889999999988874 456778899999999999999999999999886422 4666


Q ss_pred             HHHHHHHHhcC-------------------CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          290 YKHLIHGFGKE-------------------GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       290 ~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      +..+..+|...                   +..+.|...++...+.. +.+...+..+...+...|++++|...|++..+
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~  362 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS  362 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence            76666555321                   23567778888777653 34566788899999999999999999999998


Q ss_pred             CCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHhcCCC
Q 015765          351 KGWVPHFS--TMKSLVT-GLASISKVAEANELIGLMKKRFPK  389 (401)
Q Consensus       351 ~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~  389 (401)
                      ....+...  .+..+.. .+...|++++|+..+++..+..|.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~  404 (472)
T 4g1t_A          363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK  404 (472)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred             cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            75333221  2233332 235789999999999888766543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.68  E-value=3e-15  Score=124.56  Aligned_cols=209  Identities=16%  Similarity=0.061  Sum_probs=120.9

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 015765          183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL  262 (401)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  262 (401)
                      ..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  101 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY  101 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence            344555555556666666666666665532 3345555566666666666666666666665543 23455566666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765          263 CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL  342 (401)
Q Consensus       263 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  342 (401)
                      ...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence            66666666666666666543 2245566666666667777777777777666542 234556666677777777777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          343 KVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      +.++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+..|.+...+..
T Consensus       180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  232 (243)
T 2q7f_A          180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA  232 (243)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence            7777766653 3456667777777777777777777777777777666655543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.68  E-value=9.5e-15  Score=123.79  Aligned_cols=231  Identities=10%  Similarity=0.020  Sum_probs=104.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC--HHhHHHHHHHHHh
Q 015765          117 SIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN--SETYNKVIKSFCE  194 (401)
Q Consensus       117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~  194 (401)
                      ....+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..+. ...++  ..+|..+...+..
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHH
Confidence            3344444444444444444444432 222334444444444444444444444444331 10111  1124444444445


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 015765          195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL  274 (401)
Q Consensus       195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  274 (401)
                      .|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...
T Consensus        87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444431 2233444455555555555555555555444431 22333343343122223355555555


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHccCCHHHHHHH
Q 015765          275 LDGMLSRGIKPNLDTYKHLIHGFGKEGN---LEGAKKLFASMTNGG-CEPD------SYCFFMFTYFLCQGGEYETALKV  344 (401)
Q Consensus       275 ~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~  344 (401)
                      |++..+... .+...+..+...+...|+   +++|...+++..+.. -.|+      ...|..+...|...|++++|.+.
T Consensus       165 ~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  243 (272)
T 3u4t_A          165 FVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA  243 (272)
T ss_dssp             HHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            555554421 124444444444444444   555555555544321 1122      13455566666666666666666


Q ss_pred             HHHHHHCC
Q 015765          345 CRASMAKG  352 (401)
Q Consensus       345 ~~~~~~~~  352 (401)
                      ++++.+..
T Consensus       244 ~~~al~~~  251 (272)
T 3u4t_A          244 WKNILALD  251 (272)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            66666553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.68  E-value=6.2e-14  Score=114.95  Aligned_cols=199  Identities=11%  Similarity=-0.047  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015765          112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS  191 (401)
Q Consensus       112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  191 (401)
                      ..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+++..+..  +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~   85 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence            344444444445555555555555444432 2334444444455555555555555555444321  2233444444444


Q ss_pred             HHhc-CChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 015765          192 FCES-GDSSSVYSILAEMRRKSIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE  269 (401)
Q Consensus       192 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  269 (401)
                      +... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence            5555 55555555555544421111 13344444444445555555555554444432 222344444444455555555


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765          270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~  314 (401)
                      +|...++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            555555544443211233444444444444455555544444444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.68  E-value=3.1e-13  Score=132.38  Aligned_cols=307  Identities=15%  Similarity=0.156  Sum_probs=172.3

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCC-CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPE-SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV  119 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  119 (401)
                      ......+.+...+.+.+|+++++.+...+. +.-+...-+.++.+..+. +..+..++.+.+. ...       ...+..
T Consensus       987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~~d-------~~eIA~ 1057 (1630)
T 1xi4_A          987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-NYD-------APDIAN 1057 (1630)
T ss_pred             HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-hcc-------HHHHHH
Confidence            344556777799999999999998875543 223344455555555444 4444555544433 111       222455


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      .+...|.+++|..+|++..     ......+.++.   ..+++++|.++.++..       +..+|..+..++.+.|+++
T Consensus      1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHH
Confidence            5556666666666666642     11122222222   4455666666655441       2445556666666666666


Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      +|.+.|.+.      -|...|..++.++.+.|++++|.+.+....+..  ++....+.++.+|++.+++++...+.    
T Consensus      1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A         1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred             HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence            666666442      245555556666666666666666665555443  22222333555555555555433221    


Q ss_pred             HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC--------
Q 015765          280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK--------  351 (401)
Q Consensus       280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------  351 (401)
                      .   .++...|..+...|...|++++|..+|...         ..|..+..+|.+.|++++|.+.+++....        
T Consensus      1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A         1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred             h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence            1   223444445555555555555555555553         24555555555555555555555433211        


Q ss_pred             ----------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765          352 ----------------GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       352 ----------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                                      ++..++..+..++..|.+.|.+++|+.+++......+.+...|+
T Consensus      1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A         1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred             HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence                            12345667788899999999999999999999877766666654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.67  E-value=4.8e-14  Score=118.00  Aligned_cols=201  Identities=12%  Similarity=0.052  Sum_probs=132.5

Q ss_pred             HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015765           75 RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL  154 (401)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  154 (401)
                      ...|..+...+...|++++|.+.|+++....  +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence            5677778888888888888888888877432  3335677777777888888888888888777664 446667777777


Q ss_pred             HHHhcCCHHHHHHHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765          155 GCILSKNYEEVKRIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY  233 (401)
Q Consensus       155 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  233 (401)
                      .+...|++++|.+.++++.+ .+..| +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence            77777777777777777754 11233 34456666666777777777777777766542 23455566666666666666


Q ss_pred             HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      ++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus       192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            66666666665542 234445555556666666666666666666554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.67  E-value=3e-13  Score=114.68  Aligned_cols=224  Identities=11%  Similarity=-0.027  Sum_probs=186.5

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ----ANMIDHAMQTFEEMDKYGLRQSVDAL  149 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  149 (401)
                      +..++..+...+...|++++|++.|++... +   .+...+..+...|..    .+++++|...|++..+.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-L---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            567888889999999999999999999886 2   235678888889999    999999999999999875   77888


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHH
Q 015765          150 NALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----SGDSSSVYSILAEMRRKSIRPNATDFG  221 (401)
Q Consensus       150 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  221 (401)
                      ..+...|..    .+++++|+..|++..+.    .+..++..+...|..    .+++++|.+.|++..+.+   +...+.
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~  150 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT  150 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence            889999999    99999999999999764    377888899999999    999999999999998875   566777


Q ss_pred             HHHHHHHc----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 015765          222 LLLAGFYK----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDTYKHL  293 (401)
Q Consensus       222 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  293 (401)
                      .+...|..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  224 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL  224 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence            77777877    888999999998888764   45667777788888    888888888888888764   35667777


Q ss_pred             HHHHhc----CCChHHHHHHHHHHHhCC
Q 015765          294 IHGFGK----EGNLEGAKKLFASMTNGG  317 (401)
Q Consensus       294 i~~~~~----~~~~~~a~~~~~~m~~~~  317 (401)
                      ...|..    .+++++|.+.|++..+.|
T Consensus       225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          225 GAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            777777    788888888888877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.67  E-value=6.7e-14  Score=123.78  Aligned_cols=248  Identities=9%  Similarity=0.007  Sum_probs=156.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhchhhcCCCCCHHhHHHHH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN-YEEVKRIFTEFPKVYGIEPNSETYNKVI  189 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~  189 (401)
                      ...+..+...+...|++++|++.|++.++.. +-+..+|+.+..++...|+ +++|+..|++..+..  +-+...|..+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence            4455666666666777777777777776654 4456666777777777775 777777777776542  33455667777


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh-cCCH
Q 015765          190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK-LKRS  268 (401)
Q Consensus       190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~  268 (401)
                      .++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence            77777777777777777776653 3356667777777777777777777777776664 3355666777777666 4544


Q ss_pred             HHH-----HHHHHHHHHCCCCcCHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-----
Q 015765          269 EEA-----KALLDGMLSRGIKPNLDTYKHLIHGFGKEG--NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG-----  336 (401)
Q Consensus       269 ~~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----  336 (401)
                      ++|     +..|++....... +...|+.+...+...|  ++++|.+.+.++ +. ...+...+..+...|.+.|     
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence            555     4666666665322 4566777777776666  567777777776 32 2334556667777776653     


Q ss_pred             ----CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 015765          337 ----EYETALKVCRAS-MAKGWVPHFSTMKSLVTGL  367 (401)
Q Consensus       337 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~  367 (401)
                          ..++|.++++++ .+.+ +.....|..+...+
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l  363 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL  363 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence                247777777777 4432 22334454444444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=8.1e-15  Score=124.35  Aligned_cols=247  Identities=8%  Similarity=0.007  Sum_probs=192.9

Q ss_pred             hcCChHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          123 QANMIDHAMQTFEEMDKYGL---RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      ..|++++|+..|+++.+...   +.+..++..+...+...|++++|...|++..+..  +.+..++..+...+...|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence            45889999999999988632   1246778888999999999999999999998753  456788999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      +|.+.|++..+.. +.+...+..+...+...|++++|...++++.+..  |+.......+..+...|++++|...+++..
T Consensus        95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999998863 4467889999999999999999999999998864  455555556666677899999999998877


Q ss_pred             HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 015765          280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP---DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH  356 (401)
Q Consensus       280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~  356 (401)
                      ... .++...+. ++..+...++.++|.+.+....+.....   +...+..+...|...|++++|...++++.+..  |+
T Consensus       172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~  247 (275)
T 1xnf_A          172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH  247 (275)
T ss_dssp             HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred             hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence            753 23434443 6777788888999999999887642111   14678889999999999999999999998764  42


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHH
Q 015765          357 FSTMKSLVTGLASISKVAEANELI  380 (401)
Q Consensus       357 ~~~~~~l~~~~~~~g~~~~a~~~~  380 (401)
                      .  +.....++...|++++|++-+
T Consensus       248 ~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          248 N--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             T--CHHHHHHHHHHHHHHHC----
T ss_pred             h--HHHHHHHHHHHHHHHhhHHHH
Confidence            2  233355677788888888765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.66  E-value=2e-14  Score=127.18  Aligned_cols=245  Identities=10%  Similarity=0.022  Sum_probs=205.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHHHH
Q 015765          145 SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD-SSSVYSILAEMRRKSIRPNATDFGLL  223 (401)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l  223 (401)
                      +...|..+...+...|++++|++.+++..+..  +-+..+|+.+...+...|+ +++|+..|++..... +-+...|..+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~  172 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence            35667778888999999999999999998763  4457789999999999996 999999999998864 4478899999


Q ss_pred             HHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc-CCC
Q 015765          224 LAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK-EGN  302 (401)
Q Consensus       224 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~  302 (401)
                      ..++...|++++|+..|+++.+.. +.+...|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.. .|.
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~  250 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY  250 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999875 457889999999999999999999999999997543 68899999999988 666


Q ss_pred             hHHH-----HHHHHHHHhCCCCCCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----
Q 015765          303 LEGA-----KKLFASMTNGGCEPDSYCFFMFTYFLCQGG--EYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS----  371 (401)
Q Consensus       303 ~~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----  371 (401)
                      .++|     ++.+++.++.. +-+...|..+...+...|  ++++|.+.+.++ +. -+.+...+..+...|.+.|    
T Consensus       251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~  327 (382)
T 2h6f_A          251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC  327 (382)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence            5777     58888888753 335678888888888888  689999999988 33 3556788889999998864    


Q ss_pred             -----CHHHHHHHHHHH-HhcCCCCcccchhc
Q 015765          372 -----KVAEANELIGLM-KKRFPKSGDMWNAA  397 (401)
Q Consensus       372 -----~~~~a~~~~~~~-~~~~~~~~~~~~~l  397 (401)
                           .+++|+++++++ .+..|.....|..+
T Consensus       328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~  359 (382)
T 2h6f_A          328 DNKEDILNKALELCEILAKEKDTIRKEYWRYI  359 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence                 369999999999 78788777777643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=2.4e-14  Score=119.06  Aligned_cols=201  Identities=8%  Similarity=0.066  Sum_probs=94.7

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      ....|..+...+...|++++|...|+++...  .+.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             --------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            4445566666666666666666666666532  12334555556666666666666666666665543 33455555556


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY  233 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  233 (401)
                      ..+...|++++|.+.++++.+..  +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence            66666666666666666654432  3344455555555555555555555555554432 22344444455555555555


Q ss_pred             HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      ++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus       176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            55555555544432 223344444444444555555555555444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.64  E-value=7.5e-15  Score=131.91  Aligned_cols=301  Identities=10%  Similarity=-0.003  Sum_probs=216.2

Q ss_pred             ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CC
Q 015765           73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--ERFHVHSIVLYGQANMIDHAMQTFEEMDKY----GLR-QS  145 (401)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~  145 (401)
                      .....+......+...|++++|+..|+++.......+.  ..++..+...|...|++++|...+++..+.    +-. ..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            34556777888889999999999999988843211111  356778888899999999999998886542    111 12


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCC--------------------hhHH
Q 015765          146 VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGD--------------------SSSV  201 (401)
Q Consensus       146 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a  201 (401)
                      ..++..+...+...|++++|...+++..+...-.++    ..++..+...|...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            556777888889999999999998887643211122    3467788888889999                    8999


Q ss_pred             HHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----chhHHHHHHHHHhcCCHHHH
Q 015765          202 YSILAEMRRK----SIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA-SG----VNVYNIRIQSLCKLKRSEEA  271 (401)
Q Consensus       202 ~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a  271 (401)
                      .+.+++....    +..+ ...++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            9888876442    1111 2346778888899999999999999887653111 11    23788888999999999999


Q ss_pred             HHHHHHHHHC----CCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHccCCHHHH
Q 015765          272 KALLDGMLSR----GIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEP-DSYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       272 ~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a  341 (401)
                      ...+++..+.    +..+. ..++..+...|...|++++|.+.+++..+.    +-.+ ...++..+...|...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999987653    11111 467788889999999999999999887753    1111 145777888899999999999


Q ss_pred             HHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCCH
Q 015765          342 LKVCRASMAK----GW-VPHFSTMKSLVTGLASISKV  373 (401)
Q Consensus       342 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~  373 (401)
                      .+.+++..+.    +. .....++..+...+...|+.
T Consensus       327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            9999987654    21 12245566777777776654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.63  E-value=1.7e-14  Score=129.98  Aligned_cols=172  Identities=9%  Similarity=-0.020  Sum_probs=100.8

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--ERFHVHSIVLYGQANMIDHAMQTFEEMDKY----G-LRQSV  146 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~  146 (401)
                      ....+..+...+...|++++|+..|+++.......+.  ...+..+...|...|++++|...+++..+.    + .+...
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            4455666777788888888888888887743211110  146677777788888888888888876552    1 12234


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhchhhcC---C-CCCHHhHHHHHHHHHhcCC-----------------hhHHHHHH
Q 015765          147 DALNALLLGCILSKNYEEVKRIFTEFPKVYG---I-EPNSETYNKVIKSFCESGD-----------------SSSVYSIL  205 (401)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~  205 (401)
                      .++..+...|...|++++|...+++..+...   - +....++..+...|...|+                 +++|.+.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            5566677777778888888888777654311   0 1123355666666666777                 66666666


Q ss_pred             HHHHhC----CC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765          206 AEMRRK----SI-RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK  245 (401)
Q Consensus       206 ~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  245 (401)
                      ++..+.    +. .....++..+...+...|++++|...+++..+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  251 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR  251 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            554321    10 00112344444455555555555555554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.62  E-value=2.1e-12  Score=111.51  Aligned_cols=217  Identities=12%  Similarity=0.022  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHhchhhcCCCC-CHHhHHHHHHHH
Q 015765          128 DHAMQTFEEMDKYGLRQSVDALNALLLGCIL-------SKNY-------EEVKRIFTEFPKVYGIEP-NSETYNKVIKSF  192 (401)
Q Consensus       128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~  192 (401)
                      ++|..+|++..+.. +.+...|..++..+..       .|++       ++|..+|++..+.  +.| +...|..++..+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence            45555666655543 3455555555555442       3443       5555555555431  123 233455555555


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCC-HH-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH-hcCCHH
Q 015765          193 CESGDSSSVYSILAEMRRKSIRPN-AT-DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC-KLKRSE  269 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~  269 (401)
                      .+.|++++|.++|++..+.  .|+ .. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+++
T Consensus       110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence            5555555555555555543  222 22 45555555555555555555555555442 122233322222211 135555


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC-CCC--CHhhHHHHHHHHHccCCHHHHHHHHH
Q 015765          270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG-CEP--DSYCFFMFTYFLCQGGEYETALKVCR  346 (401)
Q Consensus       270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~  346 (401)
                      +|..+|++..+... -+...|..++..+.+.|++++|..+|++..+.. +.|  ....|..++..+.+.|+.+.|..+++
T Consensus       187 ~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~  265 (308)
T 2ond_A          187 VAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555544321 134455555555555555555555555555431 222  23344555555555555555555555


Q ss_pred             HHHHC
Q 015765          347 ASMAK  351 (401)
Q Consensus       347 ~~~~~  351 (401)
                      ++.+.
T Consensus       266 ~a~~~  270 (308)
T 2ond_A          266 RRFTA  270 (308)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=1.2e-13  Score=109.64  Aligned_cols=180  Identities=9%  Similarity=0.018  Sum_probs=127.1

Q ss_pred             CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015765          216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH  295 (401)
Q Consensus       216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~  295 (401)
                      +...|..+...+...|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            45566777777777777777777777776654 335666777777777777777777777777665322 4566666667


Q ss_pred             HHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 015765          296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAE  375 (401)
Q Consensus       296 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  375 (401)
                      .+...++++.|.+.+.+..+.. +.+...+..+...+.+.|++++|++.+++..+.. +.+..++..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            7777777888877777776643 3345667777777888888888888888777764 4567777888888888888888


Q ss_pred             HHHHHHHHHhcCCCCcccchhcCC
Q 015765          376 ANELIGLMKKRFPKSGDMWNAALP  399 (401)
Q Consensus       376 a~~~~~~~~~~~~~~~~~~~~ll~  399 (401)
                      |.+.|++..+..|.+...+-+||.
T Consensus       160 A~~~~~~al~~~p~~a~~~lali~  183 (184)
T 3vtx_A          160 AVKYFKKALEKEEKKAKYELALVP  183 (184)
T ss_dssp             HHHHHHHHHHTTHHHHHHCSCCSC
T ss_pred             HHHHHHHHHhCCccCHHHHHHhhC
Confidence            888888888777666554444543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=4.8e-14  Score=127.05  Aligned_cols=92  Identities=14%  Similarity=-0.054  Sum_probs=39.5

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCcc--HhHHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCchhHHHHHHHH
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLD--RMAFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQNERFHVHSIVL  120 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~  120 (401)
                      ..+...|+++.|+..++.+.......+.  ...|..+...+...|++++|...+++...    .++.+.....+..+...
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  135 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT  135 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            3444445555555555444322111110  12344444555555555555555554431    11112223344444445


Q ss_pred             HHhcCChHHHHHHHHHHh
Q 015765          121 YGQANMIDHAMQTFEEMD  138 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~  138 (401)
                      |...|++++|...+++..
T Consensus       136 ~~~~g~~~~A~~~~~~al  153 (411)
T 4a1s_A          136 LKVMGRFDEAAICCERHL  153 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            555555555555555443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.60  E-value=4.3e-14  Score=123.28  Aligned_cols=280  Identities=11%  Similarity=0.013  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-CCCHHHH
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--ERFHVHSIVLYGQANMIDHAMQTFEEMDKY----GL-RQSVDAL  149 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~  149 (401)
                      .+......+...|++++|+..|+++.......+.  ...+..+...|...|++++|.+.+++..+.    +. +....++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            3444556666677777777777766632111110  245556666666777777777776665432    10 1123445


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCC--------------------hhHHHHHH
Q 015765          150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGD--------------------SSSVYSIL  205 (401)
Q Consensus       150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~  205 (401)
                      ..+...+...|++++|...+++..+...-.++    ..++..+...+...|+                    +++|.+.+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            55666666666666666666665432111111    2245555555555555                    55555555


Q ss_pred             HHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 015765          206 AEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI-ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR---  281 (401)
Q Consensus       206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---  281 (401)
                      ++....                            .   ...+. .....++..+...+...|++++|...+++..+.   
T Consensus       167 ~~a~~~----------------------------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  215 (338)
T 3ro2_A          167 EENLSL----------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  215 (338)
T ss_dssp             HHHHHH----------------------------H---HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----------------------------H---HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            443221                            0   00000 001223444445555555555555555544332   


Q ss_pred             -CCC-cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--
Q 015765          282 -GIK-PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKG--  352 (401)
Q Consensus       282 -~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--  352 (401)
                       +.. ....++..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|...++++.+..  
T Consensus       216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence             000 01224555555566666666666666555432    1000 13455566666666777777777666655431  


Q ss_pred             --C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          353 --W-VPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       353 --~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                        - .....++..+...|.+.|++++|.+.+++..+..
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence              0 1113356667777777777777777777776653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.60  E-value=5.3e-14  Score=122.66  Aligned_cols=238  Identities=11%  Similarity=-0.001  Sum_probs=145.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCC-CCHHhHHHH
Q 015765          117 SIVLYGQANMIDHAMQTFEEMDKYGLRQS----VDALNALLLGCILSKNYEEVKRIFTEFPKVY---GIE-PNSETYNKV  188 (401)
Q Consensus       117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l  188 (401)
                      ....+...|++++|...|+++.+.. +.+    ...+..+...+...|++++|.+.+++..+..   +.. ....++..+
T Consensus        11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   89 (338)
T 3ro2_A           11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   89 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            3445566677777777777666653 222    2455556666666666666666666543221   101 112334445


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015765          189 IKSFCESGDSSSVYSILAEMRRKSI-RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR  267 (401)
Q Consensus       189 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  267 (401)
                      ...+...|++++|.+.+++..+... .++.                               .....++..+...+...|+
T Consensus        90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           90 GNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHHcCc
Confidence            5555555555555555555432100 0000                               0002244455555555555


Q ss_pred             --------------------HHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CC
Q 015765          268 --------------------SEEAKALLDGMLSR----GIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GC  318 (401)
Q Consensus       268 --------------------~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~  318 (401)
                                          +++|...+++....    +..+ ...++..+...+...|++++|.+.+++..+.    +.
T Consensus       139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  218 (338)
T 3ro2_A          139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD  218 (338)
T ss_dssp             TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence                                66666666554331    1111 2457788888999999999999999987743    11


Q ss_pred             C-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          319 E-PDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW-VPH----FSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       319 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      . ....++..+...+...|++++|...+++..+... ..+    ..++..+...|...|++++|.+.+++..+.
T Consensus       219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  292 (338)
T 3ro2_A          219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  292 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            1 1234788888999999999999999998775411 111    567888999999999999999999998765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.59  E-value=1.1e-13  Score=124.24  Aligned_cols=275  Identities=10%  Similarity=-0.023  Sum_probs=209.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCCC-CH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS----VDALNALLLGCILSKNYEEVKRIFTEFPKVY---GIEP-NS  182 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~  182 (401)
                      ...+......+...|++++|...|++..+.+ +.+    ..++..+...+...|++++|...+++..+..   +..| ..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            4455667788899999999999999998875 334    3578888899999999999999998865431   1112 24


Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHccCC--------------------hHHHH
Q 015765          183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSI-RPN----ATDFGLLLAGFYKEHK--------------------YEDVG  237 (401)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a~  237 (401)
                      .++..+...+...|++++|...+++..+... ..+    ..++..+...+...|+                    +++|.
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            5678888999999999999999998765310 012    3477888889999999                    99999


Q ss_pred             HHHHHHHHc----CCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHhcCCChHHHH
Q 015765          238 KVLQMMEKC----GIA-SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI-KPN----LDTYKHLIHGFGKEGNLEGAK  307 (401)
Q Consensus       238 ~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~  307 (401)
                      ..+++..+.    +.. ....++..+...+...|++++|...+++..+... .++    ..++..+...|...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            998877542    111 1235678888999999999999999998875310 112    347888899999999999999


Q ss_pred             HHHHHHHhC----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHH
Q 015765          308 KLFASMTNG----GCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKGW-VPH----FSTMKSLVTGLASISKVAEAN  377 (401)
Q Consensus       308 ~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~  377 (401)
                      +.+++..+.    +..+ ...++..+...|...|++++|.+.+++..+... ..+    ..++..+...|...|++++|.
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999987743    1111 145778888999999999999999998776411 111    557888999999999999999


Q ss_pred             HHHHHHHhc
Q 015765          378 ELIGLMKKR  386 (401)
Q Consensus       378 ~~~~~~~~~  386 (401)
                      +.+++..+.
T Consensus       328 ~~~~~al~~  336 (406)
T 3sf4_A          328 HFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.58  E-value=4.5e-13  Score=119.55  Aligned_cols=298  Identities=10%  Similarity=0.006  Sum_probs=202.3

Q ss_pred             HHhCCCchHHHHHHHHhhhC-CCCCCc--hhHHHHHHHH--HHhcCChHHHH-----------HHHHHHhhCCCCCCHHH
Q 015765           85 LSQANHFNAISQLLEELKTR-PDLRQN--ERFHVHSIVL--YGQANMIDHAM-----------QTFEEMDKYGLRQSVDA  148 (401)
Q Consensus        85 ~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~  148 (401)
                      +.+.+++++|..+++++... +....+  ...|..++..  ....+.++.+.           +.++.+....  .+...
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~   99 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG   99 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence            45788899999988887622 222122  2222333221  12223344444           5566554321  11111


Q ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CC--
Q 015765          149 ------LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAEMRRKS--IR--  214 (401)
Q Consensus       149 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--  214 (401)
                            +......+...|++++|...|++..+...-.++    ..++..+...|...|+++.|.+.+++..+.-  ..  
T Consensus       100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  179 (383)
T 3ulq_A          100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY  179 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence                  222456677889999999999988643221233    3567888889999999999999998876531  11  


Q ss_pred             --CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 015765          215 --PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA-S----GVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GI  283 (401)
Q Consensus       215 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~  283 (401)
                        ....++..+...|...|++++|...+++..+.... +    ...++..+..+|...|++++|...+++..+.    +.
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence              11346778888999999999999999887653111 1    1247888899999999999999999988772    22


Q ss_pred             -CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCC
Q 015765          284 -KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEPDSYCFFMFTYFLCQGGE---YETALKVCRASMAKGWVP  355 (401)
Q Consensus       284 -~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~  355 (401)
                       .....++..+...|...|++++|.+.+++..+.    +-......+..+...+...|+   +++|..++++..  ..+.
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~  337 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYAD  337 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHH
Confidence             234577888999999999999999999987753    111122335667788888998   777777777551  1122


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          356 HFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      ....+..+...|...|++++|.+.+++..+.
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3456778899999999999999999998765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.58  E-value=1.1e-11  Score=121.79  Aligned_cols=289  Identities=12%  Similarity=0.095  Sum_probs=138.4

Q ss_pred             HHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhc
Q 015765           45 TIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA  124 (401)
Q Consensus        45 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  124 (401)
                      ....+...+.+++|..+|+....      .....+.++.   ..+++++|.++.++..       +..+|..+..++...
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhC
Confidence            34455556666666666655421      0111122211   4445555555555431       123455555555555


Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 015765          125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI  204 (401)
Q Consensus       125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  204 (401)
                      |++++|.+.|.+.      .|...|..++.++.+.|++++|.+.|....+.   .++....+.++.+|++.++++....+
T Consensus      1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A         1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred             CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHH
Confidence            5555555555332      24444555555555555555555555444322   22222222344455555444432222


Q ss_pred             HHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 015765          205 LAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR---  281 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---  281 (401)
                      +    +   .++...|..+...|...|++++|..+|...         ..|..+..++++.|++++|.+.+++....   
T Consensus      1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            1    1   123334444445555555555555555442         13444444555555555544444433100   


Q ss_pred             ---------------------CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc--CCH
Q 015765          282 ---------------------GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG--GEY  338 (401)
Q Consensus       282 ---------------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~  338 (401)
                                           ++..+...+..++..|.+.|.+++|+.+++..+... .-....|+-+..+|++.  ++.
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence                                 012244455566777777777777777776665432 22333455555555443  233


Q ss_pred             HHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHH
Q 015765          339 ETALKVCRASMAKGWVP------HFSTMKSLVTGLASISKVAEAN  377 (401)
Q Consensus       339 ~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~  377 (401)
                      .++.++|..-.  ++++      +...|..++..|.+.|+++.|.
T Consensus      1333 mEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1333 REHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             HHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            33444433211  2222      4556777888888888888777

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.54  E-value=7.6e-14  Score=120.49  Aligned_cols=140  Identities=12%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC------CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC---
Q 015765           70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR------PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY---  140 (401)
Q Consensus        70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---  140 (401)
                      +.+.+..++..+...+...|++++|..+++++...      +..+.....+..+...|...|++++|...+++..+.   
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34556667778888888888888888888877631      123334556667777777777777777777776543   


Q ss_pred             ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc-----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015765          141 ---GL-RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY-----GIEP-NSETYNKVIKSFCESGDSSSVYSILAEMR  209 (401)
Q Consensus       141 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  209 (401)
                         +- +....++..+...|...|++++|...+++..+..     +..| ....+..+...+...|++++|.+++++..
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               11 1224455556666666666666666666654321     1111 12234444445555555555555555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.54  E-value=1.5e-11  Score=106.12  Aligned_cols=217  Identities=13%  Similarity=0.088  Sum_probs=121.4

Q ss_pred             hHHHHHHHHhhhCCCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHHHHHhh-CCCCCCHHHHHHHHHHH
Q 015765           92 NAISQLLEELKTRPDLRQNERFHVHSIVLYG-------QANMI-------DHAMQTFEEMDK-YGLRQSVDALNALLLGC  156 (401)
Q Consensus        92 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~  156 (401)
                      ++|..+|++.....  |.+...|...+..+.       +.|++       ++|..+|++..+ .. +.+...|..++..+
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            45566666665321  233445555555544       23554       666666666665 22 33455666666666


Q ss_pred             HhcCCHHHHHHHHHhchhhcCCCCC-HH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-ccCCh
Q 015765          157 ILSKNYEEVKRIFTEFPKVYGIEPN-SE-TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFY-KEHKY  233 (401)
Q Consensus       157 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~  233 (401)
                      .+.|++++|.++|++..+.   .|+ .. .|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|++
T Consensus       110 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~  185 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCH
T ss_pred             HhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCH
Confidence            6666666666666666532   343 22 56666666666666666666666666542 223333332222211 24666


Q ss_pred             HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHhcCCChHHHHHHH
Q 015765          234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG-IKP--NLDTYKHLIHGFGKEGNLEGAKKLF  310 (401)
Q Consensus       234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~~~~~~a~~~~  310 (401)
                      ++|.++|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..|  ....|..++..+.+.|+.+.|..++
T Consensus       186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~  264 (308)
T 2ond_A          186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE  264 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666665542 2345566666666666666666666666666642 233  3455666666666666666666666


Q ss_pred             HHHHhC
Q 015765          311 ASMTNG  316 (401)
Q Consensus       311 ~~m~~~  316 (401)
                      +++.+.
T Consensus       265 ~~a~~~  270 (308)
T 2ond_A          265 KRRFTA  270 (308)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=4e-12  Score=100.77  Aligned_cols=166  Identities=10%  Similarity=-0.012  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                      ..+|..+...|...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+.......  +.+...+..+..
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~   81 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILGS   81 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHHH
Confidence            3455556666666666666666666655554 3355555556666666666666666666554432  233444555555


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765          191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE  270 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  270 (401)
                      .+...++++.+.+.+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            5555666666666665555432 3344555555555566666666666665555543 2344555555555666666666


Q ss_pred             HHHHHHHHHHC
Q 015765          271 AKALLDGMLSR  281 (401)
Q Consensus       271 a~~~~~~~~~~  281 (401)
                      |...|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            66666555543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.52  E-value=6.9e-12  Score=111.62  Aligned_cols=311  Identities=9%  Similarity=-0.058  Sum_probs=209.3

Q ss_pred             CccHhHHHHHHHHH--HhCCCchHHHHHHHHhhh-CCCCCCc--hhHHHHHHHH--HHhcCChHHHH---------HHHH
Q 015765           72 PLDRMAFSIAVSKL--SQANHFNAISQLLEELKT-RPDLRQN--ERFHVHSIVL--YGQANMIDHAM---------QTFE  135 (401)
Q Consensus        72 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~~li~~--~~~~~~~~~a~---------~~~~  135 (401)
                      .|+..+-..+-+.+  ...+++++|.++++++.. ......+  ...|..++..  ....+.++.+.         +.++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            34555666666666  789999999999998762 1121122  2333333332  11112222222         5555


Q ss_pred             HHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHH
Q 015765          136 EMDKYGLRQSV----DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAE  207 (401)
Q Consensus       136 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  207 (401)
                      .+.....+.+.    ..+......+...|++++|+..|++..+.....++    ..++..+...|...|+++.|...+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            55432111111    12233445567899999999999988643222233    34678888999999999999999988


Q ss_pred             HHhCC--C---CC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015765          208 MRRKS--I---RP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GIA-SGVNVYNIRIQSLCKLKRSEEAKALLD  276 (401)
Q Consensus       208 ~~~~~--~---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~  276 (401)
                      ..+..  .   .+ ...++..+...|...|++++|...+++..+.    +-. ....++..+..+|...|++++|...++
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            76531  1   11 2456778889999999999999999887653    111 123567888899999999999999999


Q ss_pred             HHHH-----CCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHccCC---HHHHHHH
Q 015765          277 GMLS-----RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG----CEPDSYCFFMFTYFLCQGGE---YETALKV  344 (401)
Q Consensus       277 ~~~~-----~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~  344 (401)
                      +..+     .... ...++..+...|.+.|++++|.+.+++..+..    -......+..+...+...|+   +++|..+
T Consensus       247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9887     4322 36788889999999999999999999988642    11223445666667778888   7777777


Q ss_pred             HHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          345 CRASMAKGW-VPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       345 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      +++   .+. +.....+..+...|...|++++|.+.+++..+.
T Consensus       326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            775   222 223456678899999999999999999988654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.51  E-value=2e-12  Score=115.38  Aligned_cols=300  Identities=10%  Similarity=-0.012  Sum_probs=206.9

Q ss_pred             HhcCCChhHHHHHhhhccCCC-C--CCccHhHHHHHHHHH--HhCCCchHHH-----------HHHHHhhhCCCCCCc--
Q 015765           49 LKSESNPFRILDICCGASLAP-E--SPLDRMAFSIAVSKL--SQANHFNAIS-----------QLLEELKTRPDLRQN--  110 (401)
Q Consensus        49 ~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~--  110 (401)
                      .-..++.+.|..+++.+...- .  ..++...|..++..-  .-.+.++.+.           +.++.+...+....+  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            344677888988887764221 1  223444444444322  1223333444           666666532211110  


Q ss_pred             -hhHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---
Q 015765          111 -ERFHVHSIVLYGQANMIDHAMQTFEEMDKY----GLRQ-SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---  181 (401)
Q Consensus       111 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---  181 (401)
                       ..++......+...|++++|...|++..+.    +-.+ ...++..+...|...|++++|...+++..+...-.++   
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence             111222556678999999999999998763    1111 3467888899999999999999999988654322222   


Q ss_pred             --HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHc----CC-C
Q 015765          182 --SETYNKVIKSFCESGDSSSVYSILAEMRRKSI-RPN----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GI-A  249 (401)
Q Consensus       182 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~  249 (401)
                        ..+++.+...|...|++++|.+.+++..+... ..+    ..++..+...|...|++++|...+++..+.    +. +
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence              35688889999999999999999998765311 111    247888999999999999999999988762    22 3


Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhCCCCCC-
Q 015765          250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPNLDTYKHLIHGFGKEGN---LEGAKKLFASMTNGGCEPD-  321 (401)
Q Consensus       250 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~-  321 (401)
                      ....++..+..++.+.|++++|...+++..+.    +-......+..+...|...|+   +++|..++++.   +..|+ 
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~  338 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL  338 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence            34567888999999999999999999987654    111123346778888889999   77777777665   22332 


Q ss_pred             HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          322 SYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      ...+..+...|...|++++|...+++..+.
T Consensus       339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          339 EDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            446778889999999999999999987764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.50  E-value=2.4e-11  Score=107.89  Aligned_cols=305  Identities=6%  Similarity=-0.043  Sum_probs=204.1

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH----HH
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN---ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL-RQSV----DA  148 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~  148 (401)
                      .+......+...|++++|...+++..........   ...+..+...+...|++++|.+.+++..+... ..+.    .+
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3444556677889999999999987744321110   12455666778889999999999988765210 1122    33


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhchhhc---CCC--CC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHH
Q 015765          149 LNALLLGCILSKNYEEVKRIFTEFPKVY---GIE--PN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIR--P--NAT  218 (401)
Q Consensus       149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~  218 (401)
                      +..+...+...|++++|...+++..+..   +..  |. ...+..+...+...|++++|...+++.......  +  ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            5667778889999999999998886542   211  22 345666778888999999999999988654221  1  234


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHH
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV-NVYN-----IRIQSLCKLKRSEEAKALLDGMLSRGIKP---NLDT  289 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~  289 (401)
                      ++..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...+++.......+   ....
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            5677788888999999999999888654212211 1222     23344778899999999998877643221   1335


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015765          290 YKHLIHGFGKEGNLEGAKKLFASMTNG----GCEPDS-YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV  364 (401)
Q Consensus       290 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  364 (401)
                      +..+...+...|++++|.+.+++....    |..++. ..+..+..++...|+.++|...+++.....-  .    .-.+
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~  329 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFI  329 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHH
Confidence            667778888899999999998887643    222222 2566667778889999999999998886521  1    1123


Q ss_pred             HHHHccCCHHHHHHHHHHHHhcCCC
Q 015765          365 TGLASISKVAEANELIGLMKKRFPK  389 (401)
Q Consensus       365 ~~~~~~g~~~~a~~~~~~~~~~~~~  389 (401)
                      ..+...|  +....+++.+.+..|.
T Consensus       330 ~~~~~~g--~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          330 SHFVIEG--EAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             HHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred             HHHHHcc--HHHHHHHHHHHhCCCC
Confidence            4455555  6677788888776554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.50  E-value=1.4e-12  Score=119.51  Aligned_cols=214  Identities=14%  Similarity=0.025  Sum_probs=155.8

Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 015765          126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY-EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI  204 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  204 (401)
                      .++++++.+++..... +.+...+..+...+...|++ ++|++.|++..+..  +.+..+|..+...|.+.|++++|.+.
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3566666676665543 44677777777888888888 88888888876652  33466777888888888888888888


Q ss_pred             HHHHHhCCCCCCHHhHHHHHHHHHcc---------CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc--------CC
Q 015765          205 LAEMRRKSIRPNATDFGLLLAGFYKE---------HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL--------KR  267 (401)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~  267 (401)
                      |++..+.  .|+...+..+...+...         |++++|...+++..+.. +.+...|..+..+|...        |+
T Consensus       160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence            8887765  35567777777777777         88888888888887764 34567777777888777        78


Q ss_pred             HHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 015765          268 SEEAKALLDGMLSRGIK--PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVC  345 (401)
Q Consensus       268 ~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  345 (401)
                      +++|...|++..+....  -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888775320  367778888888888888888888888877653 234556777777777777777777654


Q ss_pred             H
Q 015765          346 R  346 (401)
Q Consensus       346 ~  346 (401)
                      .
T Consensus       316 ~  316 (474)
T 4abn_A          316 G  316 (474)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.50  E-value=1.4e-12  Score=118.77  Aligned_cols=311  Identities=10%  Similarity=-0.008  Sum_probs=177.5

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCc---hHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHF---NAISQLLEELKTRPDLRQNERFHVHSIVLYGQ  123 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  123 (401)
                      ....+.++++.|+++|.......    +...+..+...+...|+.   ++|.+.|++....     +...+..+...+..
T Consensus        11 ~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A           11 NEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC---------------------------------CHHHHHHHHHT
T ss_pred             HHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHh
Confidence            33444556666666666654331    222333444444555555   6666666666522     12234444443333


Q ss_pred             cC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-----------------------------------HhcC---
Q 015765          124 AN-----MIDHAMQTFEEMDKYGLRQSVDALNALLLGC-----------------------------------ILSK---  160 (401)
Q Consensus       124 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------------------~~~~---  160 (401)
                      .+     ++++|...|++..+.|. ++  .+..|...|                                   ...+   
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~  158 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD  158 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence            33     56667777766666542 22  233333333                                   3333   


Q ss_pred             -CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc----CC
Q 015765          161 -NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG---DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE----HK  232 (401)
Q Consensus       161 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~  232 (401)
                       +.+.+..+++...     ..+...+..+...|.+.|   +.++|++.|++..+.| .++...+..+...|...    ++
T Consensus       159 ~~~~~a~~~~~~a~-----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d  232 (452)
T 3e4b_A          159 QHLDDVERICKAAL-----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD  232 (452)
T ss_dssp             GGHHHHHHHHHHHT-----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred             cCHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence             2333333333332     223336777777888888   8888888888888776 44555556666666554    68


Q ss_pred             hHHHHHHHHHHHHcCCCCCchhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC-----ChH
Q 015765          233 YEDVGKVLQMMEKCGIASGVNVYNIRIQS-L--CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG-----NLE  304 (401)
Q Consensus       233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----~~~  304 (401)
                      +++|...|++.. .|   +...+..+... +  ...+++++|...|++..+.|   +...+..|...|. .|     +++
T Consensus       233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~  304 (452)
T 3e4b_A          233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK  304 (452)
T ss_dssp             HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred             HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence            888888888877 33   45556666665 3  45788888888888888776   5667777777766 44     888


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 015765          305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQ----GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS----ISKVAEA  376 (401)
Q Consensus       305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a  376 (401)
                      +|.++|++.. .   -+...+..+...|..    ..++++|.++|++..+.|.   ......|...|..    ..+.++|
T Consensus       305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A  377 (452)
T 3e4b_A          305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA  377 (452)
T ss_dssp             HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred             HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence            8888888776 3   355566666666665    3488888888888887762   3455566666654    4578888


Q ss_pred             HHHHHHHHhcCCCC
Q 015765          377 NELIGLMKKRFPKS  390 (401)
Q Consensus       377 ~~~~~~~~~~~~~~  390 (401)
                      ...++...+...++
T Consensus       378 ~~~~~~A~~~g~~~  391 (452)
T 3e4b_A          378 YVFSQLAKAQDTPE  391 (452)
T ss_dssp             HHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHCCCHH
Confidence            88888887764443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=1.2e-12  Score=120.00  Aligned_cols=214  Identities=9%  Similarity=-0.085  Sum_probs=178.7

Q ss_pred             chHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015765           91 FNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMI-DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIF  169 (401)
Q Consensus        91 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  169 (401)
                      ++++++.++.....  .+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus        84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            56677777766533  244577888899999999999 99999999998875 556889999999999999999999999


Q ss_pred             HhchhhcCCCCCHHhHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc--------CC
Q 015765          170 TEFPKVYGIEPNSETYNKVIKSFCES---------GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE--------HK  232 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~  232 (401)
                      ++..+.   .|+...+..+...+...         |++++|.+.|++..+.. +.+...|..+..+|...        |+
T Consensus       161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence            999754   67788888999999999         99999999999998763 44678889999999888        99


Q ss_pred             hHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHH
Q 015765          233 YEDVGKVLQMMEKCGIA--SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF  310 (401)
Q Consensus       233 ~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~  310 (401)
                      +++|...|++..+....  .+...|..+..+|...|++++|...|++..+.... +...+..+...+...|++++|.+.+
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999886421  47788999999999999999999999999887432 5677888888888888888888765


Q ss_pred             HH
Q 015765          311 AS  312 (401)
Q Consensus       311 ~~  312 (401)
                      .+
T Consensus       316 ~~  317 (474)
T 4abn_A          316 GK  317 (474)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.48  E-value=1e-12  Score=113.29  Aligned_cols=244  Identities=12%  Similarity=0.045  Sum_probs=171.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 015765          144 QSVDALNALLLGCILSKNYEEVKRIFTEFPKVY------GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK------  211 (401)
Q Consensus       144 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------  211 (401)
                      .+..++..+...+...|++++|..+++++.+..      ..+....++..+...|...|++++|.+.+++....      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            346778888999999999999999999987521      11233556888899999999999999999998764      


Q ss_pred             CC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 015765          212 SI-RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC------GI-ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR--  281 (401)
Q Consensus       212 ~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--  281 (401)
                      +. +.....+..+...+...|++++|...++++.+.      +. +.....+..+...+...|++++|...+++..+.  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            21 223567888889999999999999999988664      21 223466788889999999999999999998764  


Q ss_pred             ----CCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhC-------CCCCCHhh-------HHHHHHHHHccCCHHHHH
Q 015765          282 ----GIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNG-------GCEPDSYC-------FFMFTYFLCQGGEYETAL  342 (401)
Q Consensus       282 ----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~-------~~~li~~~~~~g~~~~a~  342 (401)
                          +..| ...++..+...|...|++++|.+.++++.+.       ...+....       +..+...+...+.+.++.
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  264 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG  264 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence                2223 3467888899999999999999999998853       11222211       122222333444555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765          343 KVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  388 (401)
                      ..++...... +....++..+..+|.+.|++++|.+++++..+..|
T Consensus       265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            6666555432 34567788999999999999999999999887643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.48  E-value=2.1e-11  Score=110.96  Aligned_cols=251  Identities=10%  Similarity=0.040  Sum_probs=180.8

Q ss_pred             HHHHHHHHHhcCCh----HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhchhhcCCCCCHHhHH
Q 015765          114 HVHSIVLYGQANMI----DHAMQTFEEMDKYGLRQSVDALNALLLGCILSK---NYEEVKRIFTEFPKVYGIEPNSETYN  186 (401)
Q Consensus       114 ~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~  186 (401)
                      ...+...|...+.+    +.+..++.....    .++..+..+...|...|   +.++|++.|++..+..  .++...+.
T Consensus       144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~  217 (452)
T 3e4b_A          144 GLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVD  217 (452)
T ss_dssp             HHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHH
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHH
Confidence            34444455555533    333333443332    23337788888999999   8999999999986642  55666557


Q ss_pred             HHHHHHHhc----CChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-H--HccCChHHHHHHHHHHHHcCCCCCchhHHHHH
Q 015765          187 KVIKSFCES----GDSSSVYSILAEMRRKSIRPNATDFGLLLAG-F--YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI  259 (401)
Q Consensus       187 ~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  259 (401)
                      .+...|...    +++++|.++|++.. .|   +...+..+... +  ...+++++|.+.|++..+.|   +...+..+.
T Consensus       218 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg  290 (452)
T 3e4b_A          218 SVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLG  290 (452)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            777777654    69999999999987 43   55666666666 4  56899999999999999876   566777787


Q ss_pred             HHHHhcC-----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765          260 QSLCKLK-----RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTY  330 (401)
Q Consensus       260 ~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  330 (401)
                      ..|. .|     ++++|...|++.. .|   +...+..|...|..    ..++++|.++|++..+.|.   ......+..
T Consensus       291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~  362 (452)
T 3e4b_A          291 KLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQ  362 (452)
T ss_dssp             HHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHH
T ss_pred             HHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHH
Confidence            7777 55     9999999999887 43   67778888877766    4499999999999998763   345566666


Q ss_pred             HHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          331 FLCQ----GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       331 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      .|..    ..+.++|..+++...+.|. ++.......+......++.++|.++.++..+.
T Consensus       363 ~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          363 LFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            6664    4689999999999999883 33333333333344556788888888877664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.46  E-value=6.3e-12  Score=99.39  Aligned_cols=169  Identities=12%  Similarity=0.054  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG  298 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  298 (401)
                      .+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            34444555555566666666665554432 2344555566666666666666666666665542 224556666666666


Q ss_pred             cCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 015765          299 KEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE  378 (401)
Q Consensus       299 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  378 (401)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777766542 3355666777777777788888888887777664 4456777788888888888888888


Q ss_pred             HHHHHHhcCCCCc
Q 015765          379 LIGLMKKRFPKSG  391 (401)
Q Consensus       379 ~~~~~~~~~~~~~  391 (401)
                      .++++.+..|.+.
T Consensus       166 ~~~~~~~~~~~~~  178 (186)
T 3as5_A          166 HFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCch
Confidence            8888877655443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.43  E-value=5e-11  Score=106.07  Aligned_cols=298  Identities=10%  Similarity=-0.032  Sum_probs=201.8

Q ss_pred             hcCCChhHHHHHhhhccCCC---CCCccHhHHHHHHHHH--HhCCCchHHH---------HHHHHhhhCCCCCCc---hh
Q 015765           50 KSESNPFRILDICCGASLAP---ESPLDRMAFSIAVSKL--SQANHFNAIS---------QLLEELKTRPDLRQN---ER  112 (401)
Q Consensus        50 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~--~~~~~~~~a~---------~~~~~~~~~~~~~~~---~~  112 (401)
                      -...+.+.|.++++.....-   ....+...|-.++..-  .-.+.+..+.         +.++.+........+   ..
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~  102 (378)
T 3q15_A           23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY  102 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence            45677899988887653210   1123444445444431  1112333333         566655421111010   11


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-----H
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGL-RQ----SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-----S  182 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~  182 (401)
                      .+......+...|++++|+..|++..+... .+    ...++..+...|...|+++.|...+++..+...-.++     .
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            233345567789999999999999876321 12    2457788889999999999999999887654322222     4


Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCch
Q 015765          183 ETYNKVIKSFCESGDSSSVYSILAEMRRK----SIR-PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GIASGVN  253 (401)
Q Consensus       183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~  253 (401)
                      .+++.+...|...|++++|.+.|++..+.    +.. ....++..+..+|...|++++|...+++..+.    +.+....
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            46788999999999999999999987653    111 12346778889999999999999999988761    2233367


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhCCCCCC-HhhH
Q 015765          254 VYNIRIQSLCKLKRSEEAKALLDGMLSRG----IKPNLDTYKHLIHGFGKEGN---LEGAKKLFASMTNGGCEPD-SYCF  325 (401)
Q Consensus       254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~-~~~~  325 (401)
                      ++..+..++.+.|++++|...+++..+..    .......+..+...|...++   +.+|..++++   .+..++ ...+
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~  339 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACA  339 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHH
Confidence            78889999999999999999999987642    12223456677777878888   7777777765   222232 3466


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          326 FMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       326 ~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      ..+...|...|++++|.+.+++..+
T Consensus       340 ~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          340 RSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7888999999999999999998765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=3e-11  Score=95.45  Aligned_cols=26  Identities=15%  Similarity=0.231  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASM  313 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m  313 (401)
                      ..+..+...+...|++++|.+.++++
T Consensus       145 ~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          145 KVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33333334444444444444444333

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.41  E-value=2.5e-10  Score=101.27  Aligned_cols=297  Identities=11%  Similarity=0.012  Sum_probs=190.3

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCcc---HhHHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCchhHHHHHHH
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLD---RMAFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQNERFHVHSIV  119 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~  119 (401)
                      ..+...|+++.|+..+..+....+....   ...+..+...+...|++++|.+.+++...    .+........+..+..
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            4556778899999988876543211111   12456666778888999999999888772    2211111233556677


Q ss_pred             HHHhcCChHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCC-CC--CHHhHHHHH
Q 015765          120 LYGQANMIDHAMQTFEEMDKY----GLR--Q-SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGI-EP--NSETYNKVI  189 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~  189 (401)
                      .+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++..+...- .+  ...++..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            788899999999988887652    221  2 2345666777888899999999999887654211 11  234567777


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHH----HHHHHHHccCChHHHHHHHHHHHHcCCCCC---chhHHHHHH
Q 015765          190 KSFCESGDSSSVYSILAEMRRKSIRPN--ATDFG----LLLAGFYKEHKYEDVGKVLQMMEKCGIASG---VNVYNIRIQ  260 (401)
Q Consensus       190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~  260 (401)
                      ..+...|++++|...+++.......++  .....    ..+..+...|++++|...++........+.   ...+..+..
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~  261 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  261 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence            888889999999999988765321111  11111    233446788999999998888765432211   224566778


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC----CCCcCH-HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 015765          261 SLCKLKRSEEAKALLDGMLSR----GIKPNL-DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG  335 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~  335 (401)
                      .+...|++++|...+++....    |..++. ..+..+..++...|+.++|...+++.....  +.    ...+..+...
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~~~~~  335 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISHFVIE  335 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHHHHHc
Confidence            888889999999988877543    222222 356666777888899999999988887642  10    1122333444


Q ss_pred             CCHHHHHHHHHHHHHC
Q 015765          336 GEYETALKVCRASMAK  351 (401)
Q Consensus       336 g~~~~a~~~~~~~~~~  351 (401)
                      |  +....+++.+...
T Consensus       336 g--~~~~~ll~~~~~~  349 (373)
T 1hz4_A          336 G--EAMAQQLRQLIQL  349 (373)
T ss_dssp             H--HHHHHHHHHHHHT
T ss_pred             c--HHHHHHHHHHHhC
Confidence            4  5556666666555

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.40  E-value=3.1e-11  Score=99.19  Aligned_cols=206  Identities=12%  Similarity=0.079  Sum_probs=161.1

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 015765          179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR  258 (401)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  258 (401)
                      +.|...+......+.+.|++++|.+.|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence            446678888999999999999999999999887543677888889999999999999999999998875 3466788899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC---HhhHHHH
Q 015765          259 IQSLCKLKRSEEAKALLDGMLSRGIKPNL-------DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD---SYCFFMF  328 (401)
Q Consensus       259 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l  328 (401)
                      ..++...|++++|...+++..+.... +.       ..|..+...+...|++++|.+.|++..+.  .|+   ...+..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence            99999999999999999999886422 34       45778888889999999999999999875  454   4567777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          329 TYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       329 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      ..+|...     +..+++++...+ ..+...+....  ....+.+++|...+++..+..|.+......
T Consensus       160 ~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~  219 (228)
T 4i17_A          160 GVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQM  219 (228)
T ss_dssp             HHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            7777544     344556665554 33444554443  334577899999999999998888765543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.37  E-value=4.1e-11  Score=114.33  Aligned_cols=164  Identities=7%  Similarity=0.038  Sum_probs=76.4

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +..+|+.+...+.+.|++++|++.|++.....  |.+...+..+..+|.+.|++++|++.|++.++.. +.+...|..+.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            34445555555555555555555555544211  2223344555555555555555555555554443 23344455555


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY  233 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  233 (401)
                      .+|...|++++|++.|++..+..  +-+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence            55555555555555555444331  2223444444455555555555555555444431 22334444444444444444


Q ss_pred             HHHHHHHHHH
Q 015765          234 EDVGKVLQMM  243 (401)
Q Consensus       234 ~~a~~~~~~~  243 (401)
                      ++|.+.++++
T Consensus       162 ~~A~~~~~ka  171 (723)
T 4gyw_A          162 TDYDERMKKL  171 (723)
T ss_dssp             TTHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.37  E-value=1.2e-11  Score=104.97  Aligned_cols=139  Identities=17%  Similarity=0.183  Sum_probs=88.0

Q ss_pred             CccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC------CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC-----
Q 015765           72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTR------PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY-----  140 (401)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----  140 (401)
                      +....++..+...+...|++++|+..+++....      ++.+.....+..+...|...|++++|.+.|++..+.     
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            335567777778888888888888888777632      333444566777777777778888887777776653     


Q ss_pred             -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc-----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765          141 -G-LRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY-----G-IEPNSETYNKVIKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       141 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                       . .+....++..+...|...|++++|...+++..+..     + .+....++..+...|...|++++|.+.+++..+
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             1 12234556666677777777777777777665430     0 111234555666666666666666666666543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.36  E-value=7.2e-09  Score=97.88  Aligned_cols=204  Identities=11%  Similarity=0.052  Sum_probs=138.9

Q ss_pred             HHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC---------CCC---
Q 015765          185 YNKVIKSFCESGDSSSVY-SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI---------ASG---  251 (401)
Q Consensus       185 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~---  251 (401)
                      |...+..+.+.|+.++|. ++|++.... ++.+...|...+...-+.|+++.|.++|+.+.+...         .|+   
T Consensus       346 W~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~  424 (679)
T 4e6h_A          346 WFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES  424 (679)
T ss_dssp             HHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence            334444455667777786 888887764 455666677777777888888888888888765310         121   


Q ss_pred             ---------chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015765          252 ---------VNVYNIRIQSLCKLKRSEEAKALLDGMLSR-G-IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP  320 (401)
Q Consensus       252 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  320 (401)
                               ..+|...+....+.|+.+.|..+|.+..+. + ..+......+.+... ..++.+.|.++|+..++. .+-
T Consensus       425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~  502 (679)
T 4e6h_A          425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY-FAT  502 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTT
T ss_pred             hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCC
Confidence                     235777777777788888888888888775 2 122233333333322 234588888888888775 233


Q ss_pred             CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          321 DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP--HFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      +...+...+......|+.+.|..+|++.......+  ....|...+..-.+.|+.+.+.++.+++.+.+|.+.
T Consensus       503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            55566677777778888899999998888764211  345677777777888988889999998888887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.35  E-value=6.4e-11  Score=113.05  Aligned_cols=168  Identities=9%  Similarity=-0.009  Sum_probs=99.2

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765          108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK  187 (401)
Q Consensus       108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  187 (401)
                      |.+...++.+...|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|++.|++..+..  +-+..+|..
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~n   82 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSN   82 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence            3345556666666666666666666666666553 3345566666666666666666666666665431  223455666


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015765          188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR  267 (401)
Q Consensus       188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  267 (401)
                      +...|.+.|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.. +.+...+..+..++...|+
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence            6666666666666666666665542 2245566666666666666666666666665543 2344556666666666666


Q ss_pred             HHHHHHHHHHHHH
Q 015765          268 SEEAKALLDGMLS  280 (401)
Q Consensus       268 ~~~a~~~~~~~~~  280 (401)
                      +++|.+.+++..+
T Consensus       161 ~~~A~~~~~kal~  173 (723)
T 4gyw_A          161 WTDYDERMKKLVS  173 (723)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.33  E-value=3.2e-10  Score=93.07  Aligned_cols=207  Identities=11%  Similarity=-0.020  Sum_probs=157.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 015765          143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL  222 (401)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (401)
                      +.++..+......+...|++++|+..|++..+.. .+++...+..+..++...|++++|.+.|++..+.. +.+...+..
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~   81 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG   81 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence            3467888889999999999999999999997653 12677788889999999999999999999998863 336678899


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcCCCCCc-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHH
Q 015765          223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGV-------NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN---LDTYKH  292 (401)
Q Consensus       223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~  292 (401)
                      +..++...|++++|...+++..+.. +.+.       ..|..+...+...|++++|...|++..+.  .|+   ...|..
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~  158 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS  158 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence            9999999999999999999998864 3344       45778888899999999999999999886  454   466777


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015765          293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL  363 (401)
Q Consensus       293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  363 (401)
                      +..+|...     +..+++++...+ ..+...|....  ....+.+++|...+++..+.. +.+..+...+
T Consensus       159 l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l  220 (228)
T 4i17_A          159 LGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence            77777544     344556665543 23344444443  334567899999999998874 3344444333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.32  E-value=3.3e-11  Score=102.16  Aligned_cols=158  Identities=13%  Similarity=0.063  Sum_probs=80.3

Q ss_pred             hCCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHH
Q 015765           87 QANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY------GL-RQSVDALNALL  153 (401)
Q Consensus        87 ~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~  153 (401)
                      ..|++++|+..+++...      ..+.+....++..+...|...|++++|...+++..+.      +- +....++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45666666666655552      1122333455666666666666666666666665543      11 12244555566


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhc-----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHhH
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVY-----G-IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK------SIRP-NATDF  220 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~  220 (401)
                      ..|...|++++|.+.+++..+..     . .+....++..+...|...|++++|.+.+++..+.      +..| ...++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            66666666666666666654321     0 0112334455555555555566555555555432      0011 12344


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHH
Q 015765          221 GLLLAGFYKEHKYEDVGKVLQMME  244 (401)
Q Consensus       221 ~~ll~~~~~~~~~~~a~~~~~~~~  244 (401)
                      ..+...+...|++++|...++++.
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444455555555555555554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.31  E-value=5e-10  Score=94.29  Aligned_cols=245  Identities=7%  Similarity=-0.039  Sum_probs=147.3

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN  161 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (401)
                      ++-.-..|.+..++.-...+.  + ..+ ......+.++|...|+++..         ..-.|....+..+.. |...+ 
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~--~-~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFS--K-VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSS--C-CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT-
T ss_pred             HHHHHHhhHHHHHHHHHHhcC--c-cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc-
Confidence            455567788888887443332  1 122 23444455777777776642         111344334433333 33322 


Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSI-RPNATDFGLLLAGFYKEHKYEDVGKVL  240 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~  240 (401)
                         |+..|++..+..  +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+
T Consensus        85 ---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l  159 (310)
T 3mv2_B           85 ---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF  159 (310)
T ss_dssp             ---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence               667777665431  45555566777778888888888888887765542 235566777778888888888888888


Q ss_pred             HHHHHcCCCC-----CchhHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHH
Q 015765          241 QMMEKCGIAS-----GVNVYNIRIQS--LCKLK--RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA  311 (401)
Q Consensus       241 ~~~~~~~~~~-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~  311 (401)
                      +.|.+.  .|     +..+...++.+  ....|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++
T Consensus       160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence            888765  34     24445555555  22233  788888888887665  3443333344447777888888888887


Q ss_pred             HHHhC-----CC----CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          312 SMTNG-----GC----EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       312 ~m~~~-----~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      .+.+.     ..    +.|..++..+|......|+  +|.++++++.+..
T Consensus       236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            65542     10    2345555455555555665  7777887777663

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.31  E-value=2.5e-09  Score=100.97  Aligned_cols=320  Identities=8%  Similarity=0.010  Sum_probs=162.0

Q ss_pred             ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC---hHHHHHHHHHHhhCC-CCCCHHH
Q 015765           73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM---IDHAMQTFEEMDKYG-LRQSVDA  148 (401)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~  148 (401)
                      .|...|..++..+.+.+.++.+..+|+.+...  +|.....|..-+..-.+.|.   ++.+..+|++.+... .+|+...
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L  141 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL  141 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence            36667777777777777777777777776632  23345566666666666666   777777777766543 1266666


Q ss_pred             HHHHHHHHHhcCCH--------HHHHHHHHhchhhcCC-CCC-HHhHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 015765          149 LNALLLGCILSKNY--------EEVKRIFTEFPKVYGI-EPN-SETYNKVIKSFC---------ESGDSSSVYSILAEMR  209 (401)
Q Consensus       149 ~~~l~~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~  209 (401)
                      |...+....+.++.        +.+.++|+......|. .++ ...|...+....         ..++++.+..+|++.+
T Consensus       142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL  221 (679)
T 4e6h_A          142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL  221 (679)
T ss_dssp             HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence            66666554443332        3344566665555555 443 345555554322         1223455555555554


Q ss_pred             hCCCCCCHHhHH--------------------------------------------------------------------
Q 015765          210 RKSIRPNATDFG--------------------------------------------------------------------  221 (401)
Q Consensus       210 ~~~~~~~~~~~~--------------------------------------------------------------------  221 (401)
                      ......-..+|.                                                                    
T Consensus       222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q  301 (679)
T 4e6h_A          222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ  301 (679)
T ss_dssp             TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred             hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence            321110011111                                                                    


Q ss_pred             -----HHHHHHHccC-------ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCcCHH
Q 015765          222 -----LLLAGFYKEH-------KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK-ALLDGMLSRGIKPNLD  288 (401)
Q Consensus       222 -----~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~p~~~  288 (401)
                           ..+.---..+       ..+.+..+|++.... ++.....|-..+..+...|+.++|. .+|++.... ++.+..
T Consensus       302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~  379 (679)
T 4e6h_A          302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV  379 (679)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred             HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence                 1110000000       001112223332222 1222333444444444556666665 777666653 233455


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhCC---------CCCC------------HhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765          289 TYKHLIHGFGKEGNLEGAKKLFASMTNGG---------CEPD------------SYCFFMFTYFLCQGGEYETALKVCRA  347 (401)
Q Consensus       289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~  347 (401)
                      .|...+....+.|++++|.++|+.+++..         -.|+            ...|...+....+.|+.+.|..+|.+
T Consensus       380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~  459 (679)
T 4e6h_A          380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK  459 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55666666666777777777777766421         0121            23466666666666777777777777


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          348 SMAKGWVPHFSTMKSLVTGLASI-SKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      +++.........|...+..-.+. ++.+.|.++|+...+.+|.+...|..
T Consensus       460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~  509 (679)
T 4e6h_A          460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK  509 (679)
T ss_dssp             HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence            76651112233343333333333 34677777777777776666666544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.25  E-value=7e-10  Score=82.35  Aligned_cols=132  Identities=12%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015765          254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC  333 (401)
Q Consensus       254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  333 (401)
                      .+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|.++++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            345566666666777777777766665432 245566666666666777777777777766543 234556666677777


Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765          334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  388 (401)
                      ..|++++|.++++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..|
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            7777777777777776653 34566677777777777777777777777766544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.20  E-value=3.8e-08  Score=82.87  Aligned_cols=184  Identities=7%  Similarity=-0.012  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI-ASGVNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      |...|+++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445555544433 33334444555555555555555555555544331 1234445555555555555555555555555


Q ss_pred             HCCCCc-----CHHHHHHHHHHHh----cCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765          280 SRGIKP-----NLDTYKHLIHGFG----KEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA  350 (401)
Q Consensus       280 ~~~~~p-----~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  350 (401)
                      +.  .|     +..+...+..++.    ..+++.+|..+|+++.+.  .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            43  33     1333333333311    122555555555555443  23322222333355555555555555554333


Q ss_pred             C-----C----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          351 K-----G----WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       351 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      .     +    -+.++.++..++......|+  +|.++++++.+..|.++
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence            2     0    02244444344433434444  55555555555555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.19  E-value=5.5e-10  Score=95.47  Aligned_cols=209  Identities=9%  Similarity=-0.007  Sum_probs=130.9

Q ss_pred             CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHccCChHH
Q 015765          161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK----SIRPN-ATDFGLLLAGFYKEHKYED  235 (401)
Q Consensus       161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~  235 (401)
                      ++++|...|++.                ...|...|++++|.+.|++....    |-+++ ..+|..+..+|.+.|++++
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   95 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN   95 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            366777766665                23456677788877777766442    21111 3567777777778888888


Q ss_pred             HHHHHHHHHHcCCC---C--CchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC----CcC-HHHHHHHHHHHhcCCChH
Q 015765          236 VGKVLQMMEKCGIA---S--GVNVYNIRIQSLCKL-KRSEEAKALLDGMLSRGI----KPN-LDTYKHLIHGFGKEGNLE  304 (401)
Q Consensus       236 a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~----~p~-~~~~~~li~~~~~~~~~~  304 (401)
                      |+..+++..+....   +  -..+++.+..+|... |++++|...|++..+...    .+. ..++..+...+.+.|+++
T Consensus        96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            88777776543110   0  134677777777775 888888888887765311    000 345777778888888888


Q ss_pred             HHHHHHHHHHhCCCCCCH------hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--cc
Q 015765          305 GAKKLFASMTNGGCEPDS------YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF------STMKSLVTGLA--SI  370 (401)
Q Consensus       305 ~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~  370 (401)
                      +|...|++..+.......      ..|..+..++...|++++|...+++..+.  .|+.      ..+..++.+|.  ..
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~  253 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS  253 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence            888888888765322211      14566677777888888888888877654  2221      13444555554  45


Q ss_pred             CCHHHHHHHHHHHHhcC
Q 015765          371 SKVAEANELIGLMKKRF  387 (401)
Q Consensus       371 g~~~~a~~~~~~~~~~~  387 (401)
                      +++++|++.|+++.+..
T Consensus       254 ~~~~~A~~~~~~~~~l~  270 (292)
T 1qqe_A          254 EQLSEHCKEFDNFMRLD  270 (292)
T ss_dssp             TTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHhccCCccH
Confidence            66777777776665443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.18  E-value=2.6e-09  Score=91.25  Aligned_cols=193  Identities=11%  Similarity=0.052  Sum_probs=99.9

Q ss_pred             HHhcCChHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHH
Q 015765          121 YGQANMIDHAMQTFEEMDKY----GLRQS-VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKS  191 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~  191 (401)
                      |...|++++|...|++..+.    |-++. ..+|+.+..+|...|++++|+..|++..+...-..+    ..+++.+...
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44455555555555544331    21111 344555555555555555555555554432100111    2345566666


Q ss_pred             HHhc-CChhHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc------hhHHHHH
Q 015765          192 FCES-GDSSSVYSILAEMRRKSIR-PN----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV------NVYNIRI  259 (401)
Q Consensus       192 ~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll  259 (401)
                      |... |++++|+..|++..+.... .+    ..++..+...+.+.|++++|...|++..+.......      ..+..+.
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  206 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG  206 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            6664 6666666666665442100 01    234666666777777777777777776664322211      1355566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcC------HHHHHHHHHHHh--cCCChHHHHHHHHHHHh
Q 015765          260 QSLCKLKRSEEAKALLDGMLSRGIKPN------LDTYKHLIHGFG--KEGNLEGAKKLFASMTN  315 (401)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~li~~~~--~~~~~~~a~~~~~~m~~  315 (401)
                      .++...|++++|...|++..+.  .|+      ...+..++.+|.  ..+++++|++.|+.+..
T Consensus       207 ~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          207 LCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            6667777777777777766553  222      112334455553  34566777777666543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.18  E-value=1.6e-09  Score=90.86  Aligned_cols=193  Identities=11%  Similarity=0.018  Sum_probs=113.3

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCch
Q 015765          179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN---ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA--SGVN  253 (401)
Q Consensus       179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~  253 (401)
                      +.+...+..+...+.+.|++++|...|+++.+.. +.+   ...+..+..++.+.|++++|...|+.+.+....  ....
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            3445566677777778888888888888877653 223   556677777788888888888888887775311  1134


Q ss_pred             hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH
Q 015765          254 VYNIRIQSLCK--------LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF  325 (401)
Q Consensus       254 ~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  325 (401)
                      .+..+..++..        .|++++|...|+++.+.... +......+.              .+......    ....+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence            45566666666        77777777777777765221 111111110              00000000    00113


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhcCCCCc
Q 015765          326 FMFTYFLCQGGEYETALKVCRASMAKGWVP--HFSTMKSLVTGLASI----------SKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       326 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      ..+...|...|++++|...++++.+.....  ....+..+..+|...          |++++|...++++.+.+|.+.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            445566667777777777777766542111  234555666666544          667777777777777666654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.17  E-value=3.5e-09  Score=78.48  Aligned_cols=126  Identities=13%  Similarity=0.164  Sum_probs=53.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015765          115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE  194 (401)
Q Consensus       115 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  194 (401)
                      ..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+..  +.+...+..+...+..
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHH
Confidence            334444444444555554444444432 2234444444444444444444444444443321  2223334444444444


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015765          195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME  244 (401)
Q Consensus       195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  244 (401)
                      .|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            444444444444443321 2223334444444444444444444444443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.16  E-value=3.1e-09  Score=89.10  Aligned_cols=102  Identities=8%  Similarity=-0.043  Sum_probs=73.3

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL--RQSVDALN  150 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~  150 (401)
                      +...+......+.+.|++++|+..|+.+.. .|..+.....+..+..+|.+.|++++|+..|++..+...  +.....+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            456667777778888888888888888873 333322256677778888888888888888888877531  12245566


Q ss_pred             HHHHHHHh--------cCCHHHHHHHHHhchhh
Q 015765          151 ALLLGCIL--------SKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       151 ~l~~~~~~--------~~~~~~a~~~~~~~~~~  175 (401)
                      .+..++..        .|++++|+..|+++.+.
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            67777777        88888888888888765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.11  E-value=3.1e-09  Score=99.87  Aligned_cols=154  Identities=13%  Similarity=0.024  Sum_probs=107.9

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 015765          195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL  274 (401)
Q Consensus       195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  274 (401)
                      .|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            467888888888887652 3457778888888888899999999888888764 34567788888888888999999988


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 015765          275 LDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG---GEYETALKVCRASMAK  351 (401)
Q Consensus       275 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~  351 (401)
                      +++..+... .+...+..+..+|...|++++|.+.+++..+.. +.+...+..+...+...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            888887642 256788888888888889999988888888753 33466777888888888   8888888888888876


Q ss_pred             C
Q 015765          352 G  352 (401)
Q Consensus       352 ~  352 (401)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.09  E-value=7.4e-09  Score=83.57  Aligned_cols=19  Identities=16%  Similarity=0.036  Sum_probs=9.2

Q ss_pred             HHhcCChHHHHHHHHHHhh
Q 015765          121 YGQANMIDHAMQTFEEMDK  139 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~  139 (401)
                      +...|++++|+..|++..+
T Consensus        14 ~~~~g~~~~A~~~~~~al~   32 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIA   32 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            3444555555555554444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.08  E-value=3e-08  Score=80.19  Aligned_cols=128  Identities=12%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCchhHH
Q 015765          181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH----KYEDVGKVLQMMEKCGIASGVNVYN  256 (401)
Q Consensus       181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~  256 (401)
                      +...+..+...|...+++++|++.|++..+.|   +...+..+...|.. +    ++++|.+.|++..+.|   +...+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            44445555555555555555555555554443   33444444444444 3    4555555555554433   333444


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHhc----CCChHHHHHHHHHHHh
Q 015765          257 IRIQSLCK----LKRSEEAKALLDGMLSRGIK-PNLDTYKHLIHGFGK----EGNLEGAKKLFASMTN  315 (401)
Q Consensus       257 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~  315 (401)
                      .+...|..    .+++++|...|++..+.|.. .+...+..|...|..    .+++++|.++|++..+
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            44444443    44555555555554444311 013444444444444    4445555555555444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.08  E-value=2.5e-09  Score=102.42  Aligned_cols=170  Identities=8%  Similarity=-0.112  Sum_probs=82.3

Q ss_pred             HhcCChHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          122 GQANMIDHAMQTFEEMD--------KYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      ...|++++|++.+++..        +.. +.+...+..+..++...|++++|++.|++..+..  +.+...|..+...+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence            34455555555555554        222 2334445555555555555555555555554432  233444555555555


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 015765          194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA  273 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  273 (401)
                      +.|++++|.+.|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|..
T Consensus       479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555555554432 2234444555555555555555 55555555443 2234445555555555555555555


Q ss_pred             HHHHHHHCCCCcC-HHHHHHHHHHHhc
Q 015765          274 LLDGMLSRGIKPN-LDTYKHLIHGFGK  299 (401)
Q Consensus       274 ~~~~~~~~~~~p~-~~~~~~li~~~~~  299 (401)
                      .|++..+.  .|+ ...+..+..++..
T Consensus       556 ~~~~al~l--~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          556 TLDEVPPT--SRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred             HHHhhccc--CcccHHHHHHHHHHHHc
Confidence            55554443  222 3344444444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=1.7e-08  Score=82.47  Aligned_cols=184  Identities=10%  Similarity=0.042  Sum_probs=110.4

Q ss_pred             HhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHH
Q 015765           75 RMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV---DALN  150 (401)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~  150 (401)
                      ...+..+...+.+.|++++|+..|+++.. .|..+.....+..+..+|.+.|++++|+..|+++.+.... +.   ..+.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence            34455556667777888888888887773 3333333456667777778888888888888887765311 21   2333


Q ss_pred             HHHHHHHh------------------cCCHHHHHHHHHhchhhcCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015765          151 ALLLGCIL------------------SKNYEEVKRIFTEFPKVYGIEPNSE-TYNKVIKSFCESGDSSSVYSILAEMRRK  211 (401)
Q Consensus       151 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  211 (401)
                      .+..++..                  .|++++|...|+++.+.   .|+.. .+......          ..+...+   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----------~~~~~~~---  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----------VFLKDRL---  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----------HHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----------HHHHHHH---
Confidence            34444433                  45677777777777654   23322 22111100          0000000   


Q ss_pred             CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015765          212 SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV----NVYNIRIQSLCKLKRSEEAKALLDGMLSRG  282 (401)
Q Consensus       212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  282 (401)
                           ......+...+.+.|++++|...|+.+.+..  |+.    ..+..+..++.+.|++++|.+.++.+...+
T Consensus       147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                 0011245567778888888888888887753  222    457777888888888888888888887764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.07  E-value=1e-08  Score=82.78  Aligned_cols=163  Identities=10%  Similarity=0.014  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHH----------------HHHHHHhcCChHHHHHHHHHHhhC
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH----------------SIVLYGQANMIDHAMQTFEEMDKY  140 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~  140 (401)
                      .+......+...|++++|+..|++.....  |.+...+..                +..+|.+.|++++|+..|++..+.
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34444556667788888888887776321  222334444                556666666666666666666655


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHH
Q 015765          141 GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD--SSSVYSILAEMRRKSIRPNAT  218 (401)
Q Consensus       141 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~  218 (401)
                      . +.+...+..+..++...|++++|+..|++..+..  +.+..++..+...|...|+  .+.+...+.....  ..|...
T Consensus        84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (208)
T 3urz_A           84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY  158 (208)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence            4 3455666666666666666666666666665442  3334455555555544332  2333344433321  111222


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                      .+.....++...|++++|...|++..+.
T Consensus       159 a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          159 ARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            2233333444455566666666655553

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.06  E-value=8.5e-09  Score=80.80  Aligned_cols=161  Identities=12%  Similarity=0.055  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH-H
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS-F  192 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~  192 (401)
                      +......+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+.   .|+...+..+... +
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL   84 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence            4455566677777777777777766654 445667777777777777777777777777654   2333322222111 1


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCCHHHH
Q 015765          193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS-GVNVYNIRIQSLCKLKRSEEA  271 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a  271 (401)
                      ...++...|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            12223334566666665542 2345566666666666666666666666666553221 234566666666666666666


Q ss_pred             HHHHHHHH
Q 015765          272 KALLDGML  279 (401)
Q Consensus       272 ~~~~~~~~  279 (401)
                      ...|++..
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.06  E-value=3.6e-08  Score=83.84  Aligned_cols=167  Identities=10%  Similarity=0.042  Sum_probs=121.2

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765          108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK  187 (401)
Q Consensus       108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  187 (401)
                      +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.   .|+......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~  189 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL  189 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence            3445566777777888888888888888887765 556778888888888888888888888888654   455443332


Q ss_pred             H-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhc
Q 015765          188 V-IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS-GVNVYNIRIQSLCKL  265 (401)
Q Consensus       188 l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~  265 (401)
                      . ...+.+.++.+.|...+++..... +.+...+..+...+...|++++|...|+.+.+..... +...+..+...+...
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            2 233566677778888888877653 4467777888888888888888888888887764221 256677788888888


Q ss_pred             CCHHHHHHHHHHHH
Q 015765          266 KRSEEAKALLDGML  279 (401)
Q Consensus       266 ~~~~~a~~~~~~~~  279 (401)
                      |+.++|...+++..
T Consensus       269 g~~~~a~~~~r~al  282 (287)
T 3qou_A          269 GTGDALASXYRRQL  282 (287)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHH
Confidence            88888877776654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.06  E-value=3.4e-08  Score=80.75  Aligned_cols=191  Identities=10%  Similarity=0.106  Sum_probs=121.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc--hhHHH
Q 015765          182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIR-P-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV--NVYNI  257 (401)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~  257 (401)
                      ...+..+...+.+.|++++|...|+++.+.... + ....+..+..++.+.|++++|...|+++.+.......  ..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            445666777788899999999999998775311 1 1356777888899999999999999998876422111  13444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHh--------------
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY--------------  323 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--------------  323 (401)
                      +..++...|..     .+            ..|..+...+...|++++|...|+++++.  .|+..              
T Consensus        84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~  144 (225)
T 2yhc_A           84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKD  144 (225)
T ss_dssp             HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence            44444432110     00            00111122222344455555555554443  12211              


Q ss_pred             ----hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765          324 ----CFFMFTYFLCQGGEYETALKVCRASMAKGWVPH----FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDM  393 (401)
Q Consensus       324 ----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  393 (401)
                          ....+...|.+.|++++|...++++++..  |+    ...+..+..+|.+.|++++|.+.++.+....|.+...
T Consensus       145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence                11345667889999999999999998863  33    2568889999999999999999999998887776543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.06  E-value=3.2e-09  Score=101.64  Aligned_cols=156  Identities=8%  Similarity=0.022  Sum_probs=79.7

Q ss_pred             HhCCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015765           86 SQANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILS  159 (401)
Q Consensus        86 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  159 (401)
                      ...|++++|++.+++...      ....+.+...+..+...+...|++++|++.|++..+.+ +.+...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            445555555555555540      01112333445555555555555555555555555543 33455555555555555


Q ss_pred             CCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 015765          160 KNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV  239 (401)
Q Consensus       160 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  239 (401)
                      |++++|++.|++..+..  +-+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|.+.
T Consensus       481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55555555555554431  2234445555555555555555 55555555432 22444555555555555555555555


Q ss_pred             HHHHHHc
Q 015765          240 LQMMEKC  246 (401)
Q Consensus       240 ~~~~~~~  246 (401)
                      |+++.+.
T Consensus       557 ~~~al~l  563 (681)
T 2pzi_A          557 LDEVPPT  563 (681)
T ss_dssp             HHTSCTT
T ss_pred             HHhhccc
Confidence            5555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=3.3e-08  Score=80.00  Aligned_cols=174  Identities=9%  Similarity=-0.029  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC----CHHHHHHHHH
Q 015765          201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK----RSEEAKALLD  276 (401)
Q Consensus       201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~  276 (401)
                      |++.|++..+.|   +...+..+...|...+++++|...|++..+.|   +...+..+...|.. +    ++++|.+.|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            344444444433   34444444444444555555555555554443   23334444444444 3    4555555555


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHc----cCCHHHHHHHHHH
Q 015765          277 GMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCE-PDSYCFFMFTYFLCQ----GGEYETALKVCRA  347 (401)
Q Consensus       277 ~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~  347 (401)
                      +..+.|   +...+..|...|..    .+++++|.++|++..+.|.. .+...+..|...|..    .+++++|.++|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            554443   33444444444443    44555555555555443310 013344444444444    4455555555555


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhc
Q 015765          348 SMAKGWVPHFSTMKSLVTGLASI-S-----KVAEANELIGLMKKR  386 (401)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~  386 (401)
                      ..+.  ..+...+..|...|... |     ++++|.+.+++..+.
T Consensus       155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            5443  11223344444444321 1     455555555554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.05  E-value=2.7e-07  Score=78.42  Aligned_cols=225  Identities=9%  Similarity=-0.030  Sum_probs=133.3

Q ss_pred             HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCC--CchHHHHHHHHhhh-CCCCCCchhHHHHHHHHH--
Q 015765           47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQAN--HFNAISQLLEELKT-RPDLRQNERFHVHSIVLY--  121 (401)
Q Consensus        47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~--  121 (401)
                      .........++|++.+..+...  .|-...+|+.--..+...|  +++++++.++.+.. .|...   .+++.--..+  
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---~aW~~R~~iL~~  115 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---QIWNYRQLIIGQ  115 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---HHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---HHHHHHHHHHHH
Confidence            3344555666788877776533  2224556777777777777  78888888877773 33332   3444333333  


Q ss_pred             --Hhc---CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015765          122 --GQA---NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYE--EVKRIFTEFPKVYGIEPNSETYNKVIKSFCE  194 (401)
Q Consensus       122 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  194 (401)
                        ...   +++++++++++.+.+.. +.+..+|+.-..++.+.|.++  ++++.++++.+..  +-|..+|+.-...+.+
T Consensus       116 ~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          116 IMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             HHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHS
T ss_pred             HHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence              333   67777777777777765 556777776666666666666  7777777776653  4556666655555555


Q ss_pred             cCC------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH-HHHHHHHHHHcC--CCCCchhHHHHHHHHHhc
Q 015765          195 SGD------SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED-VGKVLQMMEKCG--IASGVNVYNIRIQSLCKL  265 (401)
Q Consensus       195 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~  265 (401)
                      .+.      ++++++.++++.... +-|...|+.+...+.+.|+... +..+..++.+.+  -+.+...+..+..+|.+.
T Consensus       193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~  271 (306)
T 3dra_A          193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ  271 (306)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred             ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence            554      666666666666553 3356666666666655555332 334444443321  122445555666666666


Q ss_pred             CCHHHHHHHHHHHHH
Q 015765          266 KRSEEAKALLDGMLS  280 (401)
Q Consensus       266 ~~~~~a~~~~~~~~~  280 (401)
                      |+.++|.++++.+.+
T Consensus       272 ~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          272 KKYNESRTVYDLLKS  286 (306)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            666666666666654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.03  E-value=6.6e-07  Score=76.02  Aligned_cols=115  Identities=8%  Similarity=-0.077  Sum_probs=50.7

Q ss_pred             hHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 015765           92 NAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN--MIDHAMQTFEEMDKYGLRQSVDALNALLLGC----ILS---KNY  162 (401)
Q Consensus        92 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~  162 (401)
                      ++|+++++.+....  |.+..+++.--.++...|  +++++++.++.+.... +-+..+|+.-...+    ...   +++
T Consensus        50 ~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           50 ERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             HHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence            35555555555211  122234444444444444  5555555555555443 23344444333333    222   344


Q ss_pred             HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh--HHHHHHHHHHhC
Q 015765          163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS--SVYSILAEMRRK  211 (401)
Q Consensus       163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~  211 (401)
                      ++++++++++.+..  +.|..+|+.-.-.+.+.|.++  ++++.++++.+.
T Consensus       127 ~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~  175 (306)
T 3dra_A          127 YREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT  175 (306)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence            45555555544432  334444444444444444444  444444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.01  E-value=1.2e-08  Score=79.88  Aligned_cols=161  Identities=10%  Similarity=0.040  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-H
Q 015765          149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG-F  227 (401)
Q Consensus       149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~  227 (401)
                      +..+...+...|++++|+..|++..+..  +.+...+..+...+.+.|++++|...+++.....  |+...+...... +
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL   84 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence            4445667778888888888888877653  4456677888888888888888888888775542  233332222111 1


Q ss_pred             HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHH
Q 015765          228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGA  306 (401)
Q Consensus       228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a  306 (401)
                      ...++..++...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            12222334566666666543 2345666666666777777777777777666654322 244566666666666777766


Q ss_pred             HHHHHHHH
Q 015765          307 KKLFASMT  314 (401)
Q Consensus       307 ~~~~~~m~  314 (401)
                      ...|++..
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.00  E-value=4.4e-09  Score=80.01  Aligned_cols=141  Identities=11%  Similarity=0.011  Sum_probs=76.1

Q ss_pred             HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015765           85 LSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE  164 (401)
Q Consensus        85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  164 (401)
                      +...|++++|++.++....  ..+.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++++
T Consensus         7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence            3344556666666665541  122223344455666666666666666666666554 3456666666666666666666


Q ss_pred             HHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCHHhHHHHHHHHHccC
Q 015765          165 VKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI-LAEMRRKSIRPNATDFGLLLAGFYKEH  231 (401)
Q Consensus       165 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~  231 (401)
                      |+..|++..+..  +-+..++..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus        84 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            666666665442  22345566666666666666554443 35554431 224444544444444444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.97  E-value=2.5e-08  Score=93.59  Aligned_cols=152  Identities=7%  Similarity=-0.112  Sum_probs=67.9

Q ss_pred             CChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHH
Q 015765           53 SNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQ  132 (401)
Q Consensus        53 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  132 (401)
                      +++++|++.++.+...  .+.+...|..+...+...|++++|.+.+++.....  +.+...+..+...|...|++++|.+
T Consensus         3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3445555555554332  22234455555555555555555555555554221  2234455555555555555555555


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHH
Q 015765          133 TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES---GDSSSVYSILAEMR  209 (401)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~  209 (401)
                      .|++..+.. +.+...+..+..++...|++++|.+.|++..+..  +.+...+..+...+...   |+.++|.+.+++..
T Consensus        79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            555555443 3344555555555555555555555555554331  22334445555555555   55555555555554


Q ss_pred             hC
Q 015765          210 RK  211 (401)
Q Consensus       210 ~~  211 (401)
                      +.
T Consensus       156 ~~  157 (568)
T 2vsy_A          156 AQ  157 (568)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.97  E-value=6.7e-08  Score=83.07  Aligned_cols=225  Identities=10%  Similarity=0.027  Sum_probs=143.0

Q ss_pred             CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015765           88 ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKR  167 (401)
Q Consensus        88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  167 (401)
                      .|++++|.+++++......  .  .+       +...++++.|...|.+.               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~~--~--~~-------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK--T--SF-------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--C--CS-------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc--c--cc-------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            4677888888887662211  1  00       11146777777777664               346677888888888


Q ss_pred             HHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC--HHhHHHHHHHHHccCChHHHHH
Q 015765          168 IFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAEMRRKS---IRPN--ATDFGLLLAGFYKEHKYEDVGK  238 (401)
Q Consensus       168 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~~~~~~~~~~~a~~  238 (401)
                      .|.+..+...-..+    ..+|+.+...|.+.|++++|...|++....-   -.+.  ..++..+...|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            88776543210111    3467778888888899999998888765421   1111  3466777777877 88999888


Q ss_pred             HHHHHHHcCCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHhcCCChHHHHH
Q 015765          239 VLQMMEKCGIAS-----GVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPN-LDTYKHLIHGFGKEGNLEGAKK  308 (401)
Q Consensus       239 ~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~  308 (401)
                      .+++..+.....     ...+++.+...|.+.|++++|...|++..+.    +..+. ...+..+..++...|++++|..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            888775531111     1356777788888888888888888887653    21111 2356666677777788888888


Q ss_pred             HHHHHHhCCCCCC---H---hhHHHHHHHHHccCCHHHHHH
Q 015765          309 LFASMTNGGCEPD---S---YCFFMFTYFLCQGGEYETALK  343 (401)
Q Consensus       309 ~~~~m~~~~~~~~---~---~~~~~li~~~~~~g~~~~a~~  343 (401)
                      .|++.. .  .|+   .   .....++.++ ..|+.+.+.+
T Consensus       217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            888877 3  232   1   1233444444 4666665555

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.97  E-value=3.2e-09  Score=80.77  Aligned_cols=109  Identities=7%  Similarity=-0.029  Sum_probs=49.2

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015765          123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY  202 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  202 (401)
                      ..|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+..  +-+..+|..+..+|.+.|++++|.
T Consensus         9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~   85 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAV   85 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHH
Confidence            3444555555555444321 1122233344445555555555555555554331  223444455555555555555555


Q ss_pred             HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 015765          203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYED  235 (401)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  235 (401)
                      ..|++..+.. +-+...+..+...+.+.|++++
T Consensus        86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence            5555544431 2234444444444555554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.96  E-value=4.3e-08  Score=83.39  Aligned_cols=167  Identities=13%  Similarity=0.081  Sum_probs=111.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 015765          143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL  222 (401)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (401)
                      +.+...+..+...+...|++++|+..|++..+..  +-+...+..+...+.+.|++++|...++++...  .|+......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~  189 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL  189 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence            4455666667777778888888888888876652  345567777777888888888888888877554  234332222


Q ss_pred             -HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcC
Q 015765          223 -LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKE  300 (401)
Q Consensus       223 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~  300 (401)
                       ....+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+..... +...+..++..+...
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence             2223556666777777777776664 4456677777777777777777777777777653221 245677777777777


Q ss_pred             CChHHHHHHHHHHH
Q 015765          301 GNLEGAKKLFASMT  314 (401)
Q Consensus       301 ~~~~~a~~~~~~m~  314 (401)
                      |+.++|...|++..
T Consensus       269 g~~~~a~~~~r~al  282 (287)
T 3qou_A          269 GTGDALASXYRRQL  282 (287)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHH
Confidence            77777777666544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.93  E-value=7.6e-06  Score=74.92  Aligned_cols=325  Identities=9%  Similarity=-0.031  Sum_probs=185.9

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCC-chHHHHHHHHhhhC-CCCCCchhHHH
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANH-FNAISQLLEELKTR-PDLRQNERFHV  115 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~  115 (401)
                      .+..+..++..+.. ++.+++..+|+.+...  . |+...|...+....+.++ .+....+|+..... +..+.+..+|.
T Consensus        14 aR~vyer~l~~~P~-~~~e~~~~iferal~~--~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~   89 (493)
T 2uy1_A           14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK--S-YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK   89 (493)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--C-CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence            34455556666655 6789999999888764  2 478888888887777663 45577788877632 22333456777


Q ss_pred             HHHHHHH----hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH------------------------------------
Q 015765          116 HSIVLYG----QANMIDHAMQTFEEMDKYGLRQSVDALNALLLG------------------------------------  155 (401)
Q Consensus       116 ~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------  155 (401)
                      ..+..+.    ..|+.+.+.++|+..+......-...|......                                    
T Consensus        90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~  169 (493)
T 2uy1_A           90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG  169 (493)
T ss_dssp             HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            7776543    346788888899888763211111222211110                                    


Q ss_pred             --------HHh--cCC---------HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015765          156 --------CIL--SKN---------YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN  216 (401)
Q Consensus       156 --------~~~--~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  216 (401)
                              |+.  .++         .+.+..+|++.....  +.+...|...+..+.+.|+.+.|.++|++....  +.+
T Consensus       170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~  245 (493)
T 2uy1_A          170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG  245 (493)
T ss_dssp             CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred             ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence                    000  010         122334444444321  333445555555556666666666666666654  222


Q ss_pred             HHhHHHHHHHHHccCChHHHHHHHHHHHHcC---------C---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 015765          217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG---------I---ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK  284 (401)
Q Consensus       217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  284 (401)
                      ...+..    |....+.++.   ++.+.+.-         .   .....+|...+....+.++.+.|..+|++. .. ..
T Consensus       246 ~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~  316 (493)
T 2uy1_A          246 MFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EG  316 (493)
T ss_dssp             SHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SC
T ss_pred             HHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CC
Confidence            222211    1111111111   11111110         0   001234555555555677899999999988 32 12


Q ss_pred             cCHHHHH--HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015765          285 PNLDTYK--HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS  362 (401)
Q Consensus       285 p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (401)
                      .+...|.  +.+.... .++.+.|..+|+...+.. +-+...+...+....+.|+.+.|..+|+++.     .....|..
T Consensus       317 ~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~  389 (493)
T 2uy1_A          317 VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS  389 (493)
T ss_dssp             CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred             CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence            2344443  3333322 336999999999988752 2234456667777788899999999999862     25677888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhc
Q 015765          363 LVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       363 l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      .+..-...|+.+.+.+++++..+.
T Consensus       390 ~~~fE~~~G~~~~~r~v~~~~~~~  413 (493)
T 2uy1_A          390 MIEYEFMVGSMELFRELVDQKMDA  413 (493)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Confidence            888777889999999999888764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=3.3e-08  Score=85.03  Aligned_cols=131  Identities=11%  Similarity=0.099  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC--H
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY----GLRQS--V  146 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~  146 (401)
                      .|......+...|++++|...|.+...    .+....-...+..+...|...|++++|+..|++..+.    | .+.  .
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a  116 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAA  116 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence            344445556666666666666665541    1111111334555555666666666666666654431    1 111  2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015765          147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAEMR  209 (401)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~  209 (401)
                      .+++.+...|.. |++++|+..|++..+...-..+    ..++..+...|.+.|++++|++.|++..
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344445555555 5666665555554432100000    2334445555555555555555555543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.90  E-value=3.5e-08  Score=72.42  Aligned_cols=107  Identities=11%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL  367 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (401)
                      ..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            455666777777888888888887777653 3356677777778888888888888888777764 44667777788888


Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          368 ASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       368 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      ...|++++|.+.|++..+..|.+...+..
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~  120 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSNEEAREG  120 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            88888888888888888877777666543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.88  E-value=3.9e-07  Score=77.69  Aligned_cols=95  Identities=6%  Similarity=-0.073  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCCC-Hh
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLS----R-GIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEPD-SY  323 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~  323 (401)
                      ++.+..+|...|++++|...|++..+    . +..+. ..+|..+...|.+.|++++|.+.+++..+.    +..+. ..
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            44444444444444444444444432    0 11111 124444455555555555555555444321    11111 33


Q ss_pred             hHHHHHHHHHccC-CHHHHHHHHHHHH
Q 015765          324 CFFMFTYFLCQGG-EYETALKVCRASM  349 (401)
Q Consensus       324 ~~~~li~~~~~~g-~~~~a~~~~~~~~  349 (401)
                      +|..+..++.+.| .+++|.+.++++.
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            4455555555555 2355555555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.85  E-value=4.6e-07  Score=73.08  Aligned_cols=125  Identities=12%  Similarity=-0.006  Sum_probs=65.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 015765          151 ALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE  230 (401)
Q Consensus       151 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  230 (401)
                      .+...+...|++++|...|++..     .|+...+..+...+.+.|++++|.+.|++..... +.+...+..+..++...
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence            34444445555555555555542     3344455555555555555555555555554432 22444555555555555


Q ss_pred             CChHHHHHHHHHHHHcCCC--------------C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          231 HKYEDVGKVLQMMEKCGIA--------------S-GVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       231 ~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      |++++|...+++..+....              | ....+..+..++.+.|++++|...|++..+.
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            5555555555555443211              0 1145555666666666666666666666654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.85  E-value=3.8e-07  Score=73.55  Aligned_cols=123  Identities=11%  Similarity=0.023  Sum_probs=60.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      ...+...|++++|...|++..    .|+...+..+...+...|++++|+..|++..+..  +.+...+..+...+...|+
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence            334444555555555554442    3344455555555555555555555555544331  2233444555555555555


Q ss_pred             hhHHHHHHHHHHhCCCC--------------C-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          198 SSSVYSILAEMRRKSIR--------------P-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       198 ~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                      +++|.+.|++..+....              | ....+..+..++.+.|++++|...++...+.
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            55555555555443110              0 1144555555666666666666666666554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.84  E-value=1.8e-06  Score=73.59  Aligned_cols=162  Identities=12%  Similarity=0.022  Sum_probs=101.4

Q ss_pred             HHHHccCChHHHHHHHHHHHHcCC-CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHH
Q 015765          225 AGFYKEHKYEDVGKVLQMMEKCGI-ASG----VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK-PN----LDTYKHLI  294 (401)
Q Consensus       225 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li  294 (401)
                      ..+...|++++|..++++..+... .++    ...+..+...+...|++++|...|++..+.... ++    ..+++.+.
T Consensus        83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg  162 (293)
T 3u3w_A           83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA  162 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            334444555555555554443211 111    112333555555666777777777777663211 12    23678888


Q ss_pred             HHHhcCCChHHHHHHHHHHHh----C-CCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 015765          295 HGFGKEGNLEGAKKLFASMTN----G-GCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAK----GWVPH-FSTMKSL  363 (401)
Q Consensus       295 ~~~~~~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l  363 (401)
                      ..|...|++++|.+.|+++.+    . +..+. ..++..+...|.+.|++++|..++++..+.    +..+. ..++..+
T Consensus       163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  242 (293)
T 3u3w_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR  242 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            888888888888888888773    1 11222 236777888888888888888888876653    21222 5678888


Q ss_pred             HHHHHccCC-HHHHHHHHHHHHhc
Q 015765          364 VTGLASISK-VAEANELIGLMKKR  386 (401)
Q Consensus       364 ~~~~~~~g~-~~~a~~~~~~~~~~  386 (401)
                      ..+|.+.|+ +++|.+.+++..+.
T Consensus       243 g~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          243 GECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHH
Confidence            888888884 68888888887664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.82  E-value=3.7e-07  Score=77.81  Aligned_cols=164  Identities=9%  Similarity=0.011  Sum_probs=79.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCC--CCC--HHhHH
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQS-----VDALNALLLGCILSKNYEEVKRIFTEFPKVYGI--EPN--SETYN  186 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~~  186 (401)
                      ..+..+...|++++|.+.+.+..+......     ...+..+...+...|++++|+..+++..+...-  .+.  ..+++
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            344455555566666555555444321111     011223444455555666666665554322100  111  23555


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh---C-CCCC--CHHhHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC-CchhH
Q 015765          187 KVIKSFCESGDSSSVYSILAEMRR---K-SIRP--NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG----IAS-GVNVY  255 (401)
Q Consensus       187 ~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~  255 (401)
                      .+...|...|++++|...|++..+   . +..+  ...++..+...|...|++++|...+++..+..    ... -..+|
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            566666666666666666655541   1 1011  11355556666666666666666665554321    000 13455


Q ss_pred             HHHHHHHHhcCCHHHH-HHHHHHHH
Q 015765          256 NIRIQSLCKLKRSEEA-KALLDGML  279 (401)
Q Consensus       256 ~~ll~~~~~~~~~~~a-~~~~~~~~  279 (401)
                      ..+..+|.+.|++++| ...+++..
T Consensus       240 ~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          240 YQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            5666666666666666 55455443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.76  E-value=1.9e-07  Score=70.66  Aligned_cols=99  Identities=8%  Similarity=-0.037  Sum_probs=54.7

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +...+..+...+.+.|++++|+..|+.+....  |.+...|..+..+|...|++++|+..|++..+.. +.+...|..+.
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg  111 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG  111 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence            34455555555566666666666666555221  2334455555555666666666666666655544 33455555555


Q ss_pred             HHHHhcCCHHHHHHHHHhchhh
Q 015765          154 LGCILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~  175 (401)
                      .+|...|++++|...|++..+.
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            5666666666666666555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.76  E-value=3.3e-06  Score=72.57  Aligned_cols=171  Identities=8%  Similarity=-0.024  Sum_probs=99.9

Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc-C-C
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES-G-D  197 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~  197 (401)
                      ..+.+..++|++++++++..+ +-+..+|+.--..+...| .++++++.++.+....  +-+..+|+.-...+.+. + +
T Consensus        64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence            344555677888888887775 446667777666666667 4888888888877542  45556677666666555 5 7


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChH--------HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC--
Q 015765          198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE--------DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR--  267 (401)
Q Consensus       198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--  267 (401)
                      +++++++++++.+.. +.|..+|+.-.-.+.+.|.++        ++++.++++.+.. +.|...|+.....+.+.++  
T Consensus       141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence            777788887777653 335666665444444444444        5555555555543 2345555555555555443  


Q ss_pred             -----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 015765          268 -----SEEAKALLDGMLSRGIKPNLDTYKHLIHGF  297 (401)
Q Consensus       268 -----~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  297 (401)
                           ++++++.+++....... |...|+-+-..+
T Consensus       219 ~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll  252 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFL  252 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence                 34455555444443222 344444433333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.75  E-value=4.1e-07  Score=69.98  Aligned_cols=131  Identities=8%  Similarity=-0.062  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL  332 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  332 (401)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345556666667777777777777766653 2256667777777777777777777777777643 33456677777777


Q ss_pred             HccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          333 CQGGEYETALKVCRASMAKGWVPHFSTMK--SLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      ...|++++|...++++.+.. +.+...+.  ..+..+.+.|++++|.+.++.....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            78888888888888777653 23444443  3333366778888888887766544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.75  E-value=5.2e-07  Score=69.38  Aligned_cols=92  Identities=10%  Similarity=0.005  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      .+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+..  +.+...+..+...+...
T Consensus        18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHh
Confidence            33344444444444444444444432 2234444444444444455555554444443321  22333444444444444


Q ss_pred             CChhHHHHHHHHHHh
Q 015765          196 GDSSSVYSILAEMRR  210 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~  210 (401)
                      |++++|.+.|++..+
T Consensus        95 ~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           95 GKFRAALRDYETVVK  109 (166)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            444444444444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.75  E-value=1.3e-05  Score=68.91  Aligned_cols=184  Identities=11%  Similarity=-0.037  Sum_probs=137.4

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015765           78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN-MIDHAMQTFEEMDKYGLRQSVDALNALLLGC  156 (401)
Q Consensus        78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  156 (401)
                      +..+-......+..++|+++++.+....  |.+..+++.--.++...| .+++++++++.+.... +-+..+|+.-..++
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL  133 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            3333344445556678999999998432  334557777777777778 5999999999999887 56888898877777


Q ss_pred             Hhc-C-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 015765          157 ILS-K-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS--------SVYSILAEMRRKSIRPNATDFGLLLAG  226 (401)
Q Consensus       157 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~  226 (401)
                      .+. + ++++++++++++.+..  +.|..+|+.-.-.+.+.|.++        ++++.++++.+.. +-|...|+.....
T Consensus       134 ~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~l  210 (349)
T 3q7a_A          134 DRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYL  210 (349)
T ss_dssp             HHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            766 6 8899999999998653  567778877666666666666        8999999998874 4588889888888


Q ss_pred             HHccCC-------hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 015765          227 FYKEHK-------YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRS  268 (401)
Q Consensus       227 ~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  268 (401)
                      +.+.++       ++++++.++++.... +.|...|+-+-..+.+.|+.
T Consensus       211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred             HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence            888876       678888888888764 45777787777766666653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.73  E-value=5.6e-07  Score=66.23  Aligned_cols=121  Identities=9%  Similarity=0.062  Sum_probs=79.2

Q ss_pred             CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015765           71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN  150 (401)
Q Consensus        71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  150 (401)
                      .+.+...|..+...+...|++++|...|++.....  +.+...+..+...+...|++++|.+.+++..+.. +.+...+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~   88 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT   88 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence            34456677777777777788888887777776332  3335667777777777777777777777777654 44566777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015765          151 ALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG  196 (401)
Q Consensus       151 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  196 (401)
                      .+..++...|++++|.+.|++..+..  +.+...+..+...+.+.|
T Consensus        89 ~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           89 RKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence            77777777777777777777775441  223344555555554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.73  E-value=2.4e-07  Score=67.29  Aligned_cols=112  Identities=12%  Similarity=0.171  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL  332 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  332 (401)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            445555566666666666666666665542 2244555556666666666666666666655432 23444555555666


Q ss_pred             HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765          333 CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL  367 (401)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (401)
                      ...|++++|...++++.+.. +.+...+..+..++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  121 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            66666666666666555543 22334444444333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.73  E-value=1e-07  Score=74.49  Aligned_cols=123  Identities=9%  Similarity=0.050  Sum_probs=90.9

Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhcCCCh--
Q 015765          227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-FGKEGNL--  303 (401)
Q Consensus       227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~--  303 (401)
                      +...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence            346678888888888887764 44667788888888888999999888888877632 256677777777 7778887  


Q ss_pred             HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765          304 EGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       304 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      ++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus        98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            88888888888753 2346677778888888888888888888888764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.72  E-value=2.2e-06  Score=73.04  Aligned_cols=166  Identities=11%  Similarity=-0.026  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HH
Q 015765          148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS----ETYNKVIKSFCESGDSSSVYSILAEMRRKSI---RPN--AT  218 (401)
Q Consensus       148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~  218 (401)
                      .+...+..+...|++++|.+.+.+..+.....++.    ..+..+...+...|++++|.+.+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            34445556666777777777776654432111111    1122344445555666666666666554211   111  23


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-H
Q 015765          219 DFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASG-----VNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPN-L  287 (401)
Q Consensus       219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~  287 (401)
                      +++.+...|...|++++|...+++..+. ...++     ..++..+..+|...|++++|...+++..+.    +.... .
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            5555566666666666666666555421 00111     134555555555666666666655554432    10001 3


Q ss_pred             HHHHHHHHHHhcCCChHHH-HHHHHHH
Q 015765          288 DTYKHLIHGFGKEGNLEGA-KKLFASM  313 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a-~~~~~~m  313 (401)
                      .+|..+..+|...|++++| ...+++.
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            4455555555555555555 4444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.72  E-value=4e-07  Score=66.70  Aligned_cols=89  Identities=8%  Similarity=-0.050  Sum_probs=34.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      ...|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|++..+..  +.+...|..+..++...|+
T Consensus        20 G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~   96 (126)
T 4gco_A           20 GNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMRE   96 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCCC
Confidence            333444444444444444433332 2233334444444444444444444444433321  2223333344444444444


Q ss_pred             hhHHHHHHHHHH
Q 015765          198 SSSVYSILAEMR  209 (401)
Q Consensus       198 ~~~a~~~~~~~~  209 (401)
                      +++|.+.|++..
T Consensus        97 ~~~A~~~~~~al  108 (126)
T 4gco_A           97 WSKAQRAYEDAL  108 (126)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.72  E-value=7.3e-07  Score=64.63  Aligned_cols=58  Identities=12%  Similarity=0.116  Sum_probs=21.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF  172 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  172 (401)
                      +..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus        46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           46 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3333333334444444444444333322 223333333333333333444443333333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.71  E-value=7e-08  Score=73.07  Aligned_cols=99  Identities=11%  Similarity=-0.061  Sum_probs=62.6

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765          251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY  330 (401)
Q Consensus       251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  330 (401)
                      +...+..+...+...|++++|...|++...... .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            344555566666667777777777776665532 255666666666667777777777777666542 224455666666


Q ss_pred             HHHccCCHHHHHHHHHHHHHC
Q 015765          331 FLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      +|...|++++|.+.|++..+.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            667777777777777666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.71  E-value=1.9e-07  Score=70.75  Aligned_cols=97  Identities=14%  Similarity=0.024  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL  332 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  332 (401)
                      ..+..+...+.+.|++++|...|++...... -+...|..+..+|...|++++|.+.|++..+.. +.+...|..+..+|
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence            3455555556666666666666666655432 245556666666666666666666666665542 22344555566666


Q ss_pred             HccCCHHHHHHHHHHHHHC
Q 015765          333 CQGGEYETALKVCRASMAK  351 (401)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~  351 (401)
                      ...|++++|...|++..+.
T Consensus       115 ~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666665554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.71  E-value=5e-07  Score=75.05  Aligned_cols=137  Identities=9%  Similarity=-0.096  Sum_probs=73.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHc
Q 015765          257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD--SYCFFMFTYFLCQ  334 (401)
Q Consensus       257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~  334 (401)
                      .+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+..+..++..
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~  183 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN  183 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence            34455555666666666666555443  332234444445556666666666665443311 110  2245555666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765          335 GGEYETALKVCRASMAKGWVPH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       335 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  397 (401)
                      .|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....|. ...+.+|
T Consensus       184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            6666666666666653322132  234455555666666666666666666666555 4444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.71  E-value=6.2e-07  Score=65.98  Aligned_cols=118  Identities=7%  Similarity=-0.073  Sum_probs=77.8

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765          108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK  187 (401)
Q Consensus       108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  187 (401)
                      +.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+..  +.+...+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~   89 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTR   89 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHH
Confidence            4445666777777777888888888888777654 4466777777777777778888887777776542  334566677


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765          188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK  229 (401)
Q Consensus       188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (401)
                      +...+.+.|++++|.+.|++..+.. +.+...+..+..++..
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence            7777777777777777777766542 2233444444444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=1.6e-07  Score=79.56  Aligned_cols=95  Identities=11%  Similarity=-0.039  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 015765          184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC  263 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  263 (401)
                      .+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34444444445555555555555544431 2234444445555555555555555555554432 223444555555555


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 015765          264 KLKRSEEAKALLDGMLS  280 (401)
Q Consensus       264 ~~~~~~~a~~~~~~~~~  280 (401)
                      ..|++++|...|++..+
T Consensus        84 ~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.70  E-value=1.9e-07  Score=74.67  Aligned_cols=156  Identities=9%  Similarity=-0.060  Sum_probs=81.4

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCchhHHHHHHHHHhcCC
Q 015765          193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GIA-SGVNVYNIRIQSLCKLKR  267 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~  267 (401)
                      ...|++++|.+.++.+... .......+..+...+...|++++|...+++..+.    +.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            3456777777744444321 1224455666666667777777777776665441    111 123445556666666677


Q ss_pred             HHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHccC
Q 015765          268 SEEAKALLDGMLSR----GIKP--NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG---CEPD--SYCFFMFTYFLCQGG  336 (401)
Q Consensus       268 ~~~a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~~~~~~li~~~~~~g  336 (401)
                      +++|...+++..+.    +..+  ....+..+...+...|++++|.+.+++..+..   -.+.  ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77766666655442    1111  12345555666666666666666666654320   0111  122345555566666


Q ss_pred             CHHHHHHHHHHHH
Q 015765          337 EYETALKVCRASM  349 (401)
Q Consensus       337 ~~~~a~~~~~~~~  349 (401)
                      ++++|.+.+++..
T Consensus       162 ~~~~A~~~~~~al  174 (203)
T 3gw4_A          162 NLLEAQQHWLRAR  174 (203)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6666666665554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.69  E-value=1.2e-07  Score=80.22  Aligned_cols=97  Identities=12%  Similarity=0.040  Sum_probs=57.8

Q ss_pred             HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015765           75 RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL  154 (401)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  154 (401)
                      ...+..+...+.+.|++++|+..|++.....  +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4455556666666666666666666665321  2234556666666666666666666666666554 345556666666


Q ss_pred             HHHhcCCHHHHHHHHHhchh
Q 015765          155 GCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       155 ~~~~~~~~~~a~~~~~~~~~  174 (401)
                      ++...|++++|+..|++..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.68  E-value=1.6e-06  Score=72.00  Aligned_cols=188  Identities=10%  Similarity=-0.094  Sum_probs=108.8

Q ss_pred             cCCChhHHHHHhhhccCCCCCCccHhHHHHH-------HHHHHhCCCchHHHHHHHHhhhC-----------CCC-----
Q 015765           51 SESNPFRILDICCGASLAPESPLDRMAFSIA-------VSKLSQANHFNAISQLLEELKTR-----------PDL-----  107 (401)
Q Consensus        51 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~-----------~~~-----  107 (401)
                      ..+++..|.+.|..+...  .|.....|..+       ...+.+.++..+++..+..-...           .+.     
T Consensus        18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            467788888888777644  22245566666       34555555555555544443310           000     


Q ss_pred             ---CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---
Q 015765          108 ---RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---  181 (401)
Q Consensus       108 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---  181 (401)
                         ..-..+.......+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...+    .|+   
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~  169 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFL  169 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCccc
Confidence               0002233445566667777777777777776543  3332555555667777777777777765532    122   


Q ss_pred             -HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          182 -SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN--ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       182 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                       ...+..+..++.+.|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence             23556666677777777777777777664322132  234555556666777777777777777665

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.68  E-value=9.1e-07  Score=64.73  Aligned_cols=95  Identities=11%  Similarity=0.035  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG  155 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  155 (401)
                      ..+..+...+...|++++|...+++.....  +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            344444444444444444444444443211  1123334444444444444444444444444332 2233344444444


Q ss_pred             HHhcCCHHHHHHHHHhch
Q 015765          156 CILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~  173 (401)
                      +...|++++|...|++..
T Consensus        90 ~~~~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKAL  107 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHH
Confidence            444444444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.67  E-value=7.7e-07  Score=65.13  Aligned_cols=120  Identities=8%  Similarity=-0.081  Sum_probs=97.8

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHH
Q 015765          110 NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI  189 (401)
Q Consensus       110 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  189 (401)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..  +.+...+..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~   87 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence            35567778888889999999999999988765 4578888888999999999999999999987652  44567888888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765          190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY  233 (401)
Q Consensus       190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  233 (401)
                      ..+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999987763 34667777788888777764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.66  E-value=5.1e-07  Score=72.10  Aligned_cols=133  Identities=15%  Similarity=0.085  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHhh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh---cCCCC--C
Q 015765          112 RFHVHSIVLYGQANMIDHAMQTFEEMDK----YGL-RQSVDALNALLLGCILSKNYEEVKRIFTEFPKV---YGIEP--N  181 (401)
Q Consensus       112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~  181 (401)
                      ..+..+...+...|++++|...+++..+    .+. .....++..+...+...|++++|...+++..+.   .+..+  .
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence            3444444444444555555444444333    110 112233444444445555555555554444322   11011  1


Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC--HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015765          182 SETYNKVIKSFCESGDSSSVYSILAEMRRKS---IRPN--ATDFGLLLAGFYKEHKYEDVGKVLQMME  244 (401)
Q Consensus       182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~  244 (401)
                      ...+..+...+...|++++|...+++.....   ..+.  ..++..+...+...|++++|.+.+++..
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            2234444445555555555555554443210   0000  1223444455555555555555555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.65  E-value=5.3e-07  Score=64.67  Aligned_cols=105  Identities=10%  Similarity=0.032  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL  367 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (401)
                      ..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            344444555555555555555555555432 2234445555555555555666655555555543 23445555555555


Q ss_pred             HccCCHHHHHHHHHHHHhcCCCCcccc
Q 015765          368 ASISKVAEANELIGLMKKRFPKSGDMW  394 (401)
Q Consensus       368 ~~~g~~~~a~~~~~~~~~~~~~~~~~~  394 (401)
                      ...|++++|.+.+++..+..|.+...|
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~  109 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLK  109 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence            566666666666666555555544433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.64  E-value=5.4e-07  Score=70.37  Aligned_cols=120  Identities=8%  Similarity=0.008  Sum_probs=54.0

Q ss_pred             HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH--
Q 015765           86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG-CILSKNY--  162 (401)
Q Consensus        86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--  162 (401)
                      ...|++++|+..++......  +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            34455555555555544221  2223445555555555555555555555554433 2344444444444 4444554  


Q ss_pred             HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765          163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                      ++|...+++..+..  +.+...+..+...+...|++++|...|++..+
T Consensus        98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            55555555554331  22234444444455555555555555555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.64  E-value=3.4e-07  Score=66.99  Aligned_cols=96  Identities=13%  Similarity=0.100  Sum_probs=43.3

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015765          290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS  369 (401)
Q Consensus       290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (401)
                      |..+...+.+.|++++|.+.|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            3333444444444444444444444332 1233444444444444455555555444444432 2234444444444445


Q ss_pred             cCCHHHHHHHHHHHHhcC
Q 015765          370 ISKVAEANELIGLMKKRF  387 (401)
Q Consensus       370 ~g~~~~a~~~~~~~~~~~  387 (401)
                      .|++++|.+.+++..+..
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            555555555555444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.61  E-value=7e-07  Score=63.39  Aligned_cols=103  Identities=17%  Similarity=0.030  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP--HFSTMKSLV  364 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~  364 (401)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            3455566666777777777777777776643 2345667777777778888888888888777663 33  567777788


Q ss_pred             HHHHcc-CCHHHHHHHHHHHHhcCCCCc
Q 015765          365 TGLASI-SKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       365 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      .++.+. |++++|.+.+++..+..|.+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            888888 888888888888887766543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.61  E-value=5.6e-07  Score=69.34  Aligned_cols=100  Identities=13%  Similarity=-0.001  Sum_probs=78.3

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765          251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY  330 (401)
Q Consensus       251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  330 (401)
                      +...+..+...+.+.|++++|...|++..+... -+...|..+..+|...|++++|.+.+++.++.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            345677777888888888888888888887642 267778888888888888888888888888753 334677888888


Q ss_pred             HHHccCCHHHHHHHHHHHHHCC
Q 015765          331 FLCQGGEYETALKVCRASMAKG  352 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~  352 (401)
                      +|...|++++|.+.|++..+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC
Confidence            8888888888888888887763

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.61  E-value=1.8e-05  Score=72.40  Aligned_cols=306  Identities=8%  Similarity=-0.080  Sum_probs=174.6

Q ss_pred             CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC-hHHHHHHHHHHhhC-CC-CCCHH
Q 015765           71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM-IDHAMQTFEEMDKY-GL-RQSVD  147 (401)
Q Consensus        71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~  147 (401)
                      +..-..+|...+..+-. |+++.+.++|+.....  .| +...|..-+....+.+. .+....+|+..... |. ..+..
T Consensus        11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~   86 (493)
T 2uy1_A           11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYG   86 (493)
T ss_dssp             -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHH
T ss_pred             hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHH
Confidence            44567789999988866 8899999999998842  23 57788888877776663 46677888877653 42 34778


Q ss_pred             HHHHHHHHHH----hcCCHHHHHHHHHhchhhcCCCCCH--HhHHHHHHHHHh-------------cCChhHHHHHHHHH
Q 015765          148 ALNALLLGCI----LSKNYEEVKRIFTEFPKVYGIEPNS--ETYNKVIKSFCE-------------SGDSSSVYSILAEM  208 (401)
Q Consensus       148 ~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-------------~~~~~~a~~~~~~~  208 (401)
                      .|...+..+.    ..++.+.+..+|++..+.   ++..  ..|......-..             .+.+..|..+++.+
T Consensus        87 iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~  163 (493)
T 2uy1_A           87 LYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQI  163 (493)
T ss_dssp             HHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHH
Confidence            8888887654    346788899999999752   3321  122222221111             11233344555544


Q ss_pred             HhCCCCCCHHhHHHHHHHHHccC--C-----hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          209 RRKSIRPNATDFGLLLAGFYKEH--K-----YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       209 ~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      ...--..+...|...+.--...+  -     .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++....
T Consensus       164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            32100113345555555432221  1     345677888888763 556778888888889999999999999999987


Q ss_pred             CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---------CCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---------GCEP---DSYCFFMFTYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       282 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~  349 (401)
                        +.+...|...... ..   .++.   ++.+.+.         +..+   ....|...+..+.+.++.+.|..+|+++ 
T Consensus       243 --P~~~~l~~~y~~~-~e---~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-  312 (493)
T 2uy1_A          243 --SDGMFLSLYYGLV-MD---EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-  312 (493)
T ss_dssp             --CCSSHHHHHHHHH-TT---CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             --CCcHHHHHHHHhh-cc---hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence              2233333221111 11   1111   1111110         0001   1234555556555666777777777777 


Q ss_pred             HCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCcccch
Q 015765          350 AKGWVPHFSTMKSLVTGLASI-SKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       350 ~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      ... ..+..+|...+..-... ++.+.|..+|+...+.+|.+...|.
T Consensus       313 ~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~  358 (493)
T 2uy1_A          313 GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE  358 (493)
T ss_dssp             TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence            221 12334443322222222 3577777777777777666554443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.60  E-value=5.2e-07  Score=67.66  Aligned_cols=97  Identities=10%  Similarity=-0.073  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL  332 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  332 (401)
                      ..+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..+|
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence            3444555566666666666666666665532 245566666666666666666666666666543 23345556666666


Q ss_pred             HccCCHHHHHHHHHHHHHC
Q 015765          333 CQGGEYETALKVCRASMAK  351 (401)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~  351 (401)
                      ...|++++|.+.+++..+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.60  E-value=9.5e-07  Score=76.84  Aligned_cols=124  Identities=10%  Similarity=-0.104  Sum_probs=63.4

Q ss_pred             CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------chhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG--------------VNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      +...+..+...+.+.|++++|...|++..+......              ..+|..+..+|.+.|++++|...+++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666777777777888888877777776532111              244444445555555555555555554443


Q ss_pred             CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 015765          282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       282 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  341 (401)
                      .. .+...|..+..+|...|++++|.+.|++.++.. +.+...+..+..++...|+.++|
T Consensus       226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            21 134444444444445555555555554444431 11233444444444444444444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.58  E-value=1e-06  Score=66.54  Aligned_cols=99  Identities=7%  Similarity=-0.049  Sum_probs=66.2

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +...+..+...+...|++++|+..|+......  |.+...+..+..+|...|++++|+..|++..+.. +.+...+..+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg   96 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA   96 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence            45566666677777777777777777766322  3335566667777777777777777777776654 44556666677


Q ss_pred             HHHHhcCCHHHHHHHHHhchhh
Q 015765          154 LGCILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~  175 (401)
                      .+|...|++++|...|++..+.
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            7777777777777777776554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=2.1e-06  Score=64.43  Aligned_cols=104  Identities=11%  Similarity=0.045  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD----SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS  362 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (401)
                      ...+..+...+...|++++|.+.|++..+.  .|+    ...+..+...|...|++++|...+++..+.. +.+...+..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence            344444444444555555555555554443  233    3344444445555555555555555544432 223444445


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765          363 LVTGLASISKVAEANELIGLMKKRFPKSGDM  393 (401)
Q Consensus       363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  393 (401)
                      +..+|...|++++|.+.+++..+..|.+...
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  135 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVF  135 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence            5555555555555555555555544444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.53  E-value=2.8e-06  Score=73.88  Aligned_cols=123  Identities=7%  Similarity=-0.020  Sum_probs=66.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHhchhhc
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--------------VDALNALLLGCILSKNYEEVKRIFTEFPKVY  176 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  176 (401)
                      ...+..+...|.+.|++++|+..|++..+......              ..+|..+..+|.+.|++++|+..|++..+..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566666667777777777777777666531111              3455555555555555555555555554432


Q ss_pred             CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 015765          177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV  236 (401)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  236 (401)
                        +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+++
T Consensus       227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence              2344455555555555555555555555554432 22344444555555555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.53  E-value=1.1e-06  Score=65.17  Aligned_cols=99  Identities=12%  Similarity=0.002  Sum_probs=57.4

Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765          251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY  330 (401)
Q Consensus       251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  330 (401)
                      +...+..+...+...|++++|...|++...... .+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            345555566666666666666666666655432 245556666666666666666666666665542 223455555666


Q ss_pred             HHHccCCHHHHHHHHHHHHHC
Q 015765          331 FLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      ++...|++++|...++++.+.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHH
Confidence            666666666666666655543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.53  E-value=3.7e-05  Score=69.21  Aligned_cols=198  Identities=9%  Similarity=0.003  Sum_probs=98.8

Q ss_pred             HHHHHhCCCchHHHHHHHHhhhCCCCCCch---------------hHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCC
Q 015765           82 VSKLSQANHFNAISQLLEELKTRPDLRQNE---------------RFHVHSIVLYGQANMIDHAMQTFEEMDKYG-LRQS  145 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~  145 (401)
                      ...+.+.|++++|++.|..+........+.               ..+..+...|...|++++|.+.+..+...- -.++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            455667777778877777776433222211               124556666666677777766666654321 0111


Q ss_pred             HH----HHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCC-
Q 015765          146 VD----ALNALLLGCILSKNYEEVKRIFTEFPKVY---GIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRK--SIR-  214 (401)
Q Consensus       146 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-  214 (401)
                      ..    +.+.+-..+...|+.+.|..+++......   +..+. ..++..+...|...|++++|..+++++...  +.. 
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            11    12222223334566666666666553321   11111 234555666666666666666666665432  111 


Q ss_pred             -C-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCC-C-C--chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          215 -P-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIA-S-G--VNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       215 -~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                       + ...++..++..|...|++++|..++++....  .+. | .  ...+..+...+...|++++|...|.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence             1 1234555556666666666666666555331  111 1 1  1233444444555566666655555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.51  E-value=3.9e-07  Score=72.72  Aligned_cols=120  Identities=15%  Similarity=-0.023  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC--------------HHhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 015765          184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIR-PN--------------ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI  248 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  248 (401)
                      .+..+...+.+.|++++|.+.|++....... ++              ...+..+..++...|++++|...++...+.. 
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            3445555555566666666666655543110 00              1344444444555555555555555544432 


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH
Q 015765          249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG  305 (401)
Q Consensus       249 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  305 (401)
                      +.+...+..+..+|...|++++|...|++..+... -+...+..+..++...++.++
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHH
Confidence            22334444444555555555555555554444321 123344444444433333333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.51  E-value=4.3e-06  Score=60.97  Aligned_cols=93  Identities=11%  Similarity=-0.013  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      +......+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+..  +.+...|..+..++.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence            3334444444555555555555444433 2344444444555555555555555555444331  223334444444455


Q ss_pred             hcCChhHHHHHHHHHH
Q 015765          194 ESGDSSSVYSILAEMR  209 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~  209 (401)
                      ..|++++|.+.|++..
T Consensus        84 ~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           84 AVKEYASALETLDAAR   99 (126)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHH
Confidence            5555555555554443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.51  E-value=7.2e-07  Score=71.12  Aligned_cols=154  Identities=11%  Similarity=-0.017  Sum_probs=85.1

Q ss_pred             hcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCC---c-----------hhHHH
Q 015765           50 KSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQ---N-----------ERFHV  115 (401)
Q Consensus        50 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~-----------~~~~~  115 (401)
                      ...++++.+.+.+......  .......+..+...+...|++++|+..|++........+   .           ..++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL   92 (198)
T ss_dssp             -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            3445556666555433211  122345677777888888999999998888874221111   0           14566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      .+..+|...|++++|+..++...+.. +.+...+..+..+|...|++++|.+.|++..+..  +.+...+..+..++...
T Consensus        93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHH
Confidence            66666777777777777777766654 4456666667777777777777777777765442  23444555555555555


Q ss_pred             CChhHHH-HHHHHH
Q 015765          196 GDSSSVY-SILAEM  208 (401)
Q Consensus       196 ~~~~~a~-~~~~~~  208 (401)
                      ++.+++. ..+..+
T Consensus       170 ~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          170 KEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHC---------
T ss_pred             HHHHHHHHHHHHHH
Confidence            5555444 334433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.51  E-value=8.6e-06  Score=58.14  Aligned_cols=94  Identities=10%  Similarity=-0.056  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      +..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..  +.+...+..+...+.
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence            3334444444445555555444444432 2234444444444444455555555544443321  222334444444444


Q ss_pred             hcCChhHHHHHHHHHHh
Q 015765          194 ESGDSSSVYSILAEMRR  210 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~  210 (401)
                      ..|++++|.+.+++..+
T Consensus        84 ~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HTTCHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            44555555554444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.50  E-value=3.9e-06  Score=64.49  Aligned_cols=102  Identities=10%  Similarity=0.050  Sum_probs=81.2

Q ss_pred             CccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 015765           72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNA  151 (401)
Q Consensus        72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  151 (401)
                      +.+...|..+...+.+.|++++|++.|++.....  +.+...+..+..+|...|++++|+..|++..+.. +.+...|..
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~   84 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR   84 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            3456678888888888999999999888887432  3346678888888888899999999998888775 456788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHhchhhc
Q 015765          152 LLLGCILSKNYEEVKRIFTEFPKVY  176 (401)
Q Consensus       152 l~~~~~~~~~~~~a~~~~~~~~~~~  176 (401)
                      +..+|...|++++|...|++..+..
T Consensus        85 lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC
Confidence            8888888899999998888887653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.48  E-value=7.8e-06  Score=73.69  Aligned_cols=198  Identities=11%  Similarity=-0.042  Sum_probs=132.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQS----------------VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN  181 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  181 (401)
                      ...+.+.|++++|++.|..+.+......                ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            4567788999999999999887542221                124667888888999999999998888654333333


Q ss_pred             HH----hHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCC-
Q 015765          182 SE----TYNKVIKSFCESGDSSSVYSILAEMRR----KSIRPN-ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIA-  249 (401)
Q Consensus       182 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-  249 (401)
                      ..    +.+.+-..+...|+++.|.++++....    .+..+. ..++..+...+...|++++|..+++.+...  +.. 
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            32    222333334456788888888877643    222222 446677888888888888888888877543  111 


Q ss_pred             --CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765          250 --SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPN--LDTYKHLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       250 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                        ....++..++..|...|++++|..++++....    +..+.  ...+..+...+...|++++|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              12356777788888888888888888876543    11111  24456666777788888888888877765

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.48  E-value=2.4e-06  Score=60.55  Aligned_cols=95  Identities=14%  Similarity=0.023  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC--CHHhHHHHHH
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP--NSETYNKVIK  190 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~  190 (401)
                      .+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+..  +.  +...+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~   84 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD   84 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence            33444444445555555555555544433 2334444444445555555555555555444321  11  2344444444


Q ss_pred             HHHhc-CChhHHHHHHHHHHh
Q 015765          191 SFCES-GDSSSVYSILAEMRR  210 (401)
Q Consensus       191 ~~~~~-~~~~~a~~~~~~~~~  210 (401)
                      .+.+. |++++|.+.+++...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhh
Confidence            44555 555555555554443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.47  E-value=1.5e-06  Score=63.06  Aligned_cols=99  Identities=9%  Similarity=-0.044  Sum_probs=61.0

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015765          290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS  369 (401)
Q Consensus       290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (401)
                      +..+...+.+.|++++|...+++.++.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..+|..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            3344555666677777777777766542 2345566666666777777777777777766654 3355666667777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC
Q 015765          370 ISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       370 ~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      .|++++|...+++..+..|.+
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-----
T ss_pred             cCCHHHHHHHHHHHHHhCcCC
Confidence            777777777777776655543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.47  E-value=2.7e-06  Score=63.65  Aligned_cols=59  Identities=5%  Similarity=-0.070  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF  172 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  172 (401)
                      .+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++.
T Consensus        54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           54 YFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33333333334444444444444333332 222333333333333344444444443333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.44  E-value=3.3e-06  Score=61.76  Aligned_cols=91  Identities=12%  Similarity=0.078  Sum_probs=47.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC----HhhHHHHHH
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNL---DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD----SYCFFMFTY  330 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~  330 (401)
                      +...+...|++++|...|+.+.+.... +.   ..+..+..++...|++++|...+++..+..  |+    ...+..+..
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence            444555556666666666655554211 11   344455555555566666666665555432  22    334445555


Q ss_pred             HHHccCCHHHHHHHHHHHHHC
Q 015765          331 FLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      ++...|++++|...++++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            555555555555555555544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.43  E-value=4.9e-06  Score=60.90  Aligned_cols=96  Identities=8%  Similarity=0.022  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcC-CCCC----HHhHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG-IEPN----SETYNKV  188 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~l  188 (401)
                      +..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..+... ..++    ..+|..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3444555555555666665555555543 33455555555555555666665555555543210 0000    1234444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHh
Q 015765          189 IKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       189 ~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                      ..++...|++++|++.|++...
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4455555555555555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.40  E-value=3.7e-06  Score=61.42  Aligned_cols=97  Identities=6%  Similarity=0.062  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCC-CCC----HHhHHH
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGI-EPN----SETYNK  187 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~  187 (401)
                      .+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+...- .++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34444445555555555555555554443 334444555555555555555555555554432100 011    334444


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh
Q 015765          188 VIKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       188 l~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                      +...+.+.|++++|.+.|++..+
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            55555555555555555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.40  E-value=9.5e-06  Score=59.99  Aligned_cols=92  Identities=5%  Similarity=-0.176  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      +..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+..  +.+...+..+..++.
T Consensus        12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~   88 (137)
T 3q49_B           12 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence            3333333444444444444444433332 2233333344444444444444444444433221  122333333334444


Q ss_pred             hcCChhHHHHHHHHH
Q 015765          194 ESGDSSSVYSILAEM  208 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~  208 (401)
                      ..|++++|...|++.
T Consensus        89 ~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           89 EMESYDEAIANLQRA  103 (137)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHH
Confidence            444444444444333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=1.7e-05  Score=59.31  Aligned_cols=110  Identities=12%  Similarity=-0.026  Sum_probs=66.3

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 015765          252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN----LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM  327 (401)
Q Consensus       252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  327 (401)
                      ...+..+...+...|++++|...|++..+.  .|+    ...+..+..+|...|++++|.+.+++..+.. +.+...+..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence            445555666666666666666666666654  233    4556666666667777777777777666542 224556666


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015765          328 FTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT  365 (401)
Q Consensus       328 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  365 (401)
                      +..++...|++++|...+++..+.. +.+...+..+..
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence            6667777777777777777766553 223344433333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.38  E-value=4e-06  Score=61.26  Aligned_cols=113  Identities=9%  Similarity=0.115  Sum_probs=88.8

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCC----HH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL--RQS----VD  147 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~  147 (401)
                      ....|..+...+...|++++|...|+......  +.+...+..+...+...|++++|...+++..+...  .++    ..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            34577888889999999999999999988432  33467888889999999999999999999877531  112    77


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015765          148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS  191 (401)
Q Consensus       148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  191 (401)
                      ++..+..++...|++++|.+.|++..+.   .|+......+...
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~  121 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence            8888899999999999999999999765   4566555544443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.37  E-value=7.8e-06  Score=59.78  Aligned_cols=55  Identities=16%  Similarity=0.195  Sum_probs=21.6

Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015765          223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGM  278 (401)
Q Consensus       223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  278 (401)
                      +...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++.
T Consensus        14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A           14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            3333444444444444444443332 122333333444444444444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.35  E-value=0.00065  Score=58.09  Aligned_cols=95  Identities=7%  Similarity=0.011  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC-hhHHHH
Q 015765          127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK--NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD-SSSVYS  203 (401)
Q Consensus       127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~  203 (401)
                      +++++.+++.+.... +-+..+|+.-..++...+  .+++++.+++.+.+..  +.|..+|+.-.-.+...|. ++++++
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            345555555555443 334555555444444444  2555555555554432  3344445444444444444 345555


Q ss_pred             HHHHHHhCCCCCCHHhHHHHHH
Q 015765          204 ILAEMRRKSIRPNATDFGLLLA  225 (401)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ll~  225 (401)
                      .++++.+.. +-|...|+....
T Consensus       167 ~~~~~I~~~-p~N~SAW~~R~~  187 (331)
T 3dss_A          167 FTDSLITRN-FSNYSSWHYRSC  187 (331)
T ss_dssp             HHHHHHHHC-SCCHHHHHHHHH
T ss_pred             HHHHHHHHC-CCCHHHHHHHHH
Confidence            555554442 224444444333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.33  E-value=3.2e-05  Score=56.38  Aligned_cols=95  Identities=12%  Similarity=0.011  Sum_probs=54.0

Q ss_pred             HHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHH
Q 015765           80 IAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS---VDALNALLLG  155 (401)
Q Consensus        80 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~  155 (401)
                      .+...+...|++++|...|+.+.. .|+.+.....+..+..++...|++++|...|+...+.. +.+   ...+..+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence            344555666666666666666653 23222112455555666666666666666666665543 222   4455556666


Q ss_pred             HHhcCCHHHHHHHHHhchhh
Q 015765          156 CILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~~~  175 (401)
                      +...|++++|...|+++.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            66666666666666666544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.33  E-value=0.0002  Score=61.25  Aligned_cols=139  Identities=9%  Similarity=-0.062  Sum_probs=84.8

Q ss_pred             HhcCChH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          122 GQANMID-HAMQTFEEMDKYGLRQSVDALNALLLGCILSKN----------YEEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       122 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                      .+.|.++ +|+++++.++..+ +-+..+|+.--..+...+.          +++++.+++.+....  +-+..+|+.-.-
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~w  116 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW  116 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            3555554 7888888888765 4455666654444333332          566777777776543  445666666666


Q ss_pred             HHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 015765          191 SFCESG--DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK-YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL  265 (401)
Q Consensus       191 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  265 (401)
                      .+.+.+  ++++++++++++.+.. +-|...|+.-.-.+...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred             HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence            666666  3677777777777653 3466666666666666666 467777777776664 34555666555555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.31  E-value=1e-06  Score=63.51  Aligned_cols=86  Identities=17%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             cCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765          265 LKRSEEAKALLDGMLSRGI--KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL  342 (401)
Q Consensus       265 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  342 (401)
                      .|++++|+..|++..+.+.  +-+...+..+..+|...|++++|.+.+++..+.. +-+...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            4566666666666665431  1134556666666666667777766666666543 223555666666666666666666


Q ss_pred             HHHHHHHHC
Q 015765          343 KVCRASMAK  351 (401)
Q Consensus       343 ~~~~~~~~~  351 (401)
                      ..+++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.30  E-value=9.5e-06  Score=61.64  Aligned_cols=133  Identities=9%  Similarity=-0.011  Sum_probs=69.2

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhhhC----CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC----H
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELKTR----PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR-QS----V  146 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~  146 (401)
                      .++..+...+...|++++|+..+++....    ++.......+..+...+...|++++|.+.+++..+.... .+    .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            45666667777777777777777766521    111111235555666666777777777766665432100 01    3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765          147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAEM  208 (401)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~  208 (401)
                      ..+..+...+...|++++|.+.+++..+...-..+    ..++..+...+...|++++|.+.+++.
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34455555566666666666666555432100111    123444445555555555555555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.30  E-value=8.3e-06  Score=59.04  Aligned_cols=93  Identities=6%  Similarity=-0.021  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015765           78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI  157 (401)
Q Consensus        78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  157 (401)
                      +..+...+.+.|++++|+..|+......  |.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3334444455555555555555544211  2223344445555555555555555555554443 234444445555555


Q ss_pred             hcCCHHHHHHHHHhch
Q 015765          158 LSKNYEEVKRIFTEFP  173 (401)
Q Consensus       158 ~~~~~~~a~~~~~~~~  173 (401)
                      ..|++++|+..|++..
T Consensus        97 ~~g~~~~A~~~~~~al  112 (121)
T 1hxi_A           97 NEHNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            5555555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.28  E-value=3.7e-06  Score=64.00  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCC-CHhh
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIK-PN----LDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEP-DSYC  324 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~  324 (401)
                      +..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|.+.+++..+.    +..+ ....
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            444444555555555555555544432100 01    134455555566666666666666554432    1000 1234


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          325 FFMFTYFLCQGGEYETALKVCRASMAK----GWV-PHFSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       325 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                      +..+...+...|++++|.+.+++..+.    +.. .....+..+...|...|++++|.+.+++..+.
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            555666666777777777777665543    111 11345666777777888888888888877654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.26  E-value=3.4e-06  Score=60.69  Aligned_cols=87  Identities=6%  Similarity=-0.148  Sum_probs=52.4

Q ss_pred             CCCchHHHHHHHHhhhCC-CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015765           88 ANHFNAISQLLEELKTRP-DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVK  166 (401)
Q Consensus        88 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  166 (401)
                      .|++++|+..|++..... ..+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            466667777776666321 113335566666666777777777777777766654 345666666666777777777777


Q ss_pred             HHHHhchhh
Q 015765          167 RIFTEFPKV  175 (401)
Q Consensus       167 ~~~~~~~~~  175 (401)
                      ..+++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777666554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.25  E-value=5.9e-06  Score=63.34  Aligned_cols=99  Identities=15%  Similarity=0.130  Sum_probs=62.7

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------Cc-CHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765          252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSR--------GI--------KP-NLDTYKHLIHGFGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~--------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~  314 (401)
                      ...+......+.+.|++++|...|.+....        ..        .| +...|..+..+|.+.|++++|...+++.+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345666667777778888888888776653        00        11 23456666666666777777777776666


Q ss_pred             hCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          315 NGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      +.. +.+...|..+..+|...|++++|...|++..+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            543 234556666666677777777777777666655

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.16  E-value=3.8e-06  Score=76.68  Aligned_cols=119  Identities=12%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChH
Q 015765          225 AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE  304 (401)
Q Consensus       225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~  304 (401)
                      ..+.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|...+++..+... -+...|..+..+|...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence            34556677777777777776653 33456666777777777777777777777766532 24566666667777777777


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHH--HHccCCHHHHHHHHH
Q 015765          305 GAKKLFASMTNGGCEPDSYCFFMFTYF--LCQGGEYETALKVCR  346 (401)
Q Consensus       305 ~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  346 (401)
                      +|.+.|++..+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7777777766542 1122334444333  566666666666665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.12  E-value=0.00016  Score=67.28  Aligned_cols=160  Identities=15%  Similarity=0.162  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC-
Q 015765          233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR----------SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG-  301 (401)
Q Consensus       233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-  301 (401)
                      .++|++.++.+...+ +.+..+|+.--.++...|+          ++++...++.+.+...+ +..+|+.-...+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence            356677777776654 2344556555555555555          78888888888776544 6677777767777777 


Q ss_pred             -ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---------
Q 015765          302 -NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG-EYETALKVCRASMAKGWVPHFSTMKSLVTGLASI---------  370 (401)
Q Consensus       302 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  370 (401)
                       +++++++.++++.+.. .-|...|+.-...+.+.| .++++.+.++++++.. +-+...|+....++.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence             6688888888888764 346677777777777777 7888888888888765 44677777766666542         


Q ss_pred             -----CCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          371 -----SKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       371 -----g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                           +.++++++.+++..+..|.|...|+-
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y  231 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFY  231 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence                 56799999999999999999988874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.12  E-value=1e-05  Score=73.87  Aligned_cols=121  Identities=7%  Similarity=0.025  Sum_probs=90.9

Q ss_pred             HHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015765           81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK  160 (401)
Q Consensus        81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  160 (401)
                      +...+.+.|++++|++.|++.....  +.+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            3445567899999999999887432  3346788889999999999999999999998875 557888888999999999


Q ss_pred             CHHHHHHHHHhchhhcCCCCCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 015765          161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKS--FCESGDSSSVYSILA  206 (401)
Q Consensus       161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  206 (401)
                      ++++|++.|++..+..  +.+...+..+..+  +.+.|++++|.+.++
T Consensus        89 ~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           89 KFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             CHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999987653  2233445555555  778899999999988

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.12  E-value=8.6e-06  Score=70.80  Aligned_cols=153  Identities=10%  Similarity=-0.022  Sum_probs=82.8

Q ss_pred             HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 015765          217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG  296 (401)
Q Consensus       217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  296 (401)
                      ...+..+...+.+.|++++|...|++.....  |+..       .+...++.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            5567777888889999999999999887753  3322       1222333333332221          1367778888


Q ss_pred             HhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHH
Q 015765          297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL-ASISKVAE  375 (401)
Q Consensus       297 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~  375 (401)
                      |.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+.... ...+..+.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999888753 3356788888899999999999999999887653 22344455555442 34566778


Q ss_pred             HHHHHHHHHhcCCCC
Q 015765          376 ANELIGLMKKRFPKS  390 (401)
Q Consensus       376 a~~~~~~~~~~~~~~  390 (401)
                      +.++|..+....|.+
T Consensus       318 a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          318 QKEMYKGIFKGKDEG  332 (338)
T ss_dssp             ---------------
T ss_pred             HHHHHHHhhCCCCCC
Confidence            888888888776544

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.11  E-value=4e-05  Score=69.61  Aligned_cols=124  Identities=12%  Similarity=-0.048  Sum_probs=74.9

Q ss_pred             HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015765          217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG--------------VNVYNIRIQSLCKLKRSEEAKALLDGMLSRG  282 (401)
Q Consensus       217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  282 (401)
                      ...+..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|+..+++..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45666777778888888888888887776431111              3556666666666666666666666666553


Q ss_pred             CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765          283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL  342 (401)
Q Consensus       283 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  342 (401)
                      . .+...|..+..+|...|++++|...|++.++.. +-+...+..+..++...++.+++.
T Consensus       348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2 245566666666666666666666666666542 123345555555566666555554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.09  E-value=5.4e-05  Score=68.73  Aligned_cols=86  Identities=6%  Similarity=-0.045  Sum_probs=39.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 015765          184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC  263 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  263 (401)
                      .|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.
T Consensus       319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          319 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            44444444555555555555555544432 2234444445555555555555555555554432 223344444444454


Q ss_pred             hcCCHHHH
Q 015765          264 KLKRSEEA  271 (401)
Q Consensus       264 ~~~~~~~a  271 (401)
                      +.++.+++
T Consensus       397 ~~~~~~~a  404 (457)
T 1kt0_A          397 KAKEHNER  404 (457)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44544444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.08  E-value=4.2e-05  Score=67.29  Aligned_cols=122  Identities=11%  Similarity=-0.009  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC--------------CCC-cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCC
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSR--------------GIK-PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCE  319 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  319 (401)
                      +..+...+.+.|++++|...|++..+.              ... .+...|..+..+|.+.|++++|.+.+++.++.. +
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  304 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  304 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence            444455555556666666665555441              011 134677778888888888888888888888753 3


Q ss_pred             CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 015765          320 PDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE  378 (401)
Q Consensus       320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  378 (401)
                      .+...|..+..+|...|++++|.+.++++.+.. +.+...+..+..++...++.+++.+
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778888888888888888888888888764 3356667777777777776666554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.07  E-value=6.5e-05  Score=57.39  Aligned_cols=61  Identities=13%  Similarity=0.003  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765          148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                      .|..+..+|.+.|++++|+..+++..+..  +.+...|..+..+|...|++++|...|++...
T Consensus        65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           65 LYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            34444444444444444444444444321  22333444444444444444444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.07  E-value=2.7e-05  Score=58.41  Aligned_cols=100  Identities=11%  Similarity=0.006  Sum_probs=61.7

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHhCCCCCC-------------HhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC
Q 015765          292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPD-------------SYCFFMFTYFLCQGGEYETALKVCRASMAK-----GW  353 (401)
Q Consensus       292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~  353 (401)
                      .....+.+.|++++|.+.|++.++.  .|+             ...|..+..++.+.|++++|+..+++.++.     .+
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3344445555556665555555543  122             126666677777777777777777777664     11


Q ss_pred             CC-CHHHH----HHHHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765          354 VP-HFSTM----KSLVTGLASISKVAEANELIGLMKKRFPKSGDM  393 (401)
Q Consensus       354 ~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  393 (401)
                      .| +...|    .....++...|++++|+..|++..+..|.|...
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            23 34556    677777777888888888888877776655443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.05  E-value=4.8e-05  Score=66.88  Aligned_cols=137  Identities=7%  Similarity=0.009  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF  192 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  192 (401)
                      .+..+...+.+.|++++|++.|++.++.-  +...          .....+++.    ...     +.+..+|..+..+|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~~----~~~-----~~~~~~~~nla~~~  283 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADGA----KLQ-----PVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHHG----GGH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHHH----HHH-----HHHHHHHHHHHHHH
Confidence            35556666777777777777777766520  0000          000000000    000     11233455555555


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 015765          193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK  272 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  272 (401)
                      .+.|++++|++.+++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555432 2234455555555555555555555555555442 223444444444544444444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.02  E-value=4.3e-05  Score=69.48  Aligned_cols=62  Identities=15%  Similarity=0.025  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhh------hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELK------TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEM  137 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~  137 (401)
                      .+++.+...|...|++++|..++++..      -.++.|.....++.|...|...|++++|+.++++.
T Consensus       352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344555555555555555554444433      01222222334444444444455555544444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.96  E-value=4.8e-05  Score=69.19  Aligned_cols=88  Identities=11%  Similarity=-0.035  Sum_probs=44.4

Q ss_pred             HHhCCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCC--CCCHHHHHH
Q 015765           85 LSQANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-----YGL--RQSVDALNA  151 (401)
Q Consensus        85 ~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~  151 (401)
                      +...|++++|+.++++...      .+..+....+++.+..+|...|++++|+.++++.++     .|.  +....+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            3455666666666655541      111122234555555666666666666666555443     120  112334555


Q ss_pred             HHHHHHhcCCHHHHHHHHHhc
Q 015765          152 LLLGCILSKNYEEVKRIFTEF  172 (401)
Q Consensus       152 l~~~~~~~~~~~~a~~~~~~~  172 (401)
                      |...|...|++++|+.++++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            555555566666555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.96  E-value=3.9e-05  Score=66.67  Aligned_cols=126  Identities=13%  Similarity=0.120  Sum_probs=84.6

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765          252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF  331 (401)
Q Consensus       252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  331 (401)
                      ...+..+...+.+.|++++|...|++....  .|+...       +...++.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            345666666777778888888888776654  233221       223344444332221          1378888999


Q ss_pred             HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765          332 LCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       332 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  397 (401)
                      |.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+..|.+...+..|
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L  304 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL  304 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            999999999999999999875 45788999999999999999999999999999888877766543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.93  E-value=0.00078  Score=62.70  Aligned_cols=173  Identities=6%  Similarity=-0.038  Sum_probs=115.9

Q ss_pred             chHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015765           91 FNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM----------IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK  160 (401)
Q Consensus        91 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  160 (401)
                      -++|++.++.+....  |.+..+|+.--.++...|+          ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus        45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            345677777776322  2223455555555555555          788888888887766 457777777777777777


Q ss_pred             --CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-------
Q 015765          161 --NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG-DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE-------  230 (401)
Q Consensus       161 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------  230 (401)
                        +++++++.++++.+..  +-|..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.       
T Consensus       122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence              6688888888887654  556677777766677777 7778888888777653 33666676665555442       


Q ss_pred             -------CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765          231 -------HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE  270 (401)
Q Consensus       231 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  270 (401)
                             +.++++.+.+++..... +.+...|+..-..+.+.++.++
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                   45678888888887764 4567778877777777666443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.92  E-value=8.4e-06  Score=57.69  Aligned_cols=90  Identities=13%  Similarity=0.155  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------HH
Q 015765          286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH-------FS  358 (401)
Q Consensus       286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~  358 (401)
                      +...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            34556666666677777777777777766542 2345566666777777777777777777776543  33       33


Q ss_pred             HHHHHHHHHHccCCHHHHHH
Q 015765          359 TMKSLVTGLASISKVAEANE  378 (401)
Q Consensus       359 ~~~~l~~~~~~~g~~~~a~~  378 (401)
                      .+..+..++...|+.+.|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHhHhhhHh
Confidence            44444455555454444433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.90  E-value=0.00059  Score=50.43  Aligned_cols=87  Identities=10%  Similarity=0.044  Sum_probs=38.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-
Q 015765          260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ-  334 (401)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-  334 (401)
                      ..|...+.+++|.+.|++..+.|   +...+..|...|..    .+++++|.++|++..+.|   +...+..+...|.. 
T Consensus        33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence            33333344444444444444433   33444444444443    444555555555544432   23334444444444 


Q ss_pred             ---cCCHHHHHHHHHHHHHCC
Q 015765          335 ---GGEYETALKVCRASMAKG  352 (401)
Q Consensus       335 ---~g~~~~a~~~~~~~~~~~  352 (401)
                         .++.++|.+++++..+.|
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHHCC
Confidence               445555555555555444

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.88  E-value=0.0006  Score=50.37  Aligned_cols=109  Identities=8%  Similarity=-0.024  Sum_probs=48.1

Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----cCChhHH
Q 015765          126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----SGDSSSV  201 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a  201 (401)
                      ++++|++.|++..+.| .++..    +...|...+.+++|.+.|++..+.    -+...+..+...|..    .+++++|
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            3445555555554444 22222    333344444444455555444321    233444444444444    4445555


Q ss_pred             HHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHc
Q 015765          202 YSILAEMRRKSIRPNATDFGLLLAGFYK----EHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~  246 (401)
                      +++|++..+.|   +...+..+...|..    .++.++|...|++..+.
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            55555444433   33334444444443    44444444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.86  E-value=0.00028  Score=52.90  Aligned_cols=93  Identities=6%  Similarity=-0.041  Sum_probs=43.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHhchhh----cCCCC
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQ------S-----VDALNALLLGCILSKNYEEVKRIFTEFPKV----YGIEP  180 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~  180 (401)
                      .....+.+.|++++|+..|++.++.....      +     ...|..+..++.+.|++++|+..+++..+.    ..+.|
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p   95 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   95 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence            33444455556666666655555432110      1     124555555555555555555555554432    00122


Q ss_pred             C-HHhH----HHHHHHHHhcCChhHHHHHHHHH
Q 015765          181 N-SETY----NKVIKSFCESGDSSSVYSILAEM  208 (401)
Q Consensus       181 ~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~  208 (401)
                      + ...|    .....++...|++++|+..|++.
T Consensus        96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            2 2334    44444455555555555555444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.82  E-value=0.00013  Score=51.88  Aligned_cols=79  Identities=13%  Similarity=0.045  Sum_probs=45.5

Q ss_pred             HHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015765           93 AISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF  172 (401)
Q Consensus        93 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  172 (401)
                      .|++.|++.....  +.+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus         3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3455555554221  2334556666666666666666666666666554 334556666666666666666666666665


Q ss_pred             hh
Q 015765          173 PK  174 (401)
Q Consensus       173 ~~  174 (401)
                      .+
T Consensus        80 l~   81 (115)
T 2kat_A           80 LA   81 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.77  E-value=3.3e-05  Score=54.54  Aligned_cols=60  Identities=7%  Similarity=-0.004  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      .+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34444445555555555555555554443 3344455555555555555555555555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.76  E-value=0.0004  Score=46.63  Aligned_cols=59  Identities=12%  Similarity=0.102  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      +..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3334444444444444444444444332 2233444444444444444444444444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.76  E-value=0.00025  Score=50.45  Aligned_cols=80  Identities=15%  Similarity=0.131  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  349 (401)
                      .|...|++..+... .+...+..+...|...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...+++..
T Consensus         3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677777776532 356778888888888888888888888887653 3346677778888888888888888888776


Q ss_pred             HC
Q 015765          350 AK  351 (401)
Q Consensus       350 ~~  351 (401)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.75  E-value=0.00014  Score=50.44  Aligned_cols=62  Identities=10%  Similarity=-0.084  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      ...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344455555555555555555555555443 2234445555555555555555555555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.69  E-value=0.00022  Score=48.00  Aligned_cols=80  Identities=10%  Similarity=0.221  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG  366 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  366 (401)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3455556666666666666666666666542 2244555666666666666666666666666543 2344445444444


Q ss_pred             HH
Q 015765          367 LA  368 (401)
Q Consensus       367 ~~  368 (401)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.65  E-value=5.2e-05  Score=56.76  Aligned_cols=86  Identities=6%  Similarity=-0.008  Sum_probs=45.0

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015765          264 KLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNL----------EGAKKLFASMTNGGCEPDSYCFFMFTYFLC  333 (401)
Q Consensus       264 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  333 (401)
                      +.+.+++|.+.++...+.... +...|+.+..++...+++          ++|+..|++.++.. +-+...|..+..+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            445566666666666665322 556666666666655543          35555555555432 113344555555555


Q ss_pred             ccC-----------CHHHHHHHHHHHHHC
Q 015765          334 QGG-----------EYETALKVCRASMAK  351 (401)
Q Consensus       334 ~~g-----------~~~~a~~~~~~~~~~  351 (401)
                      ..|           ++++|.+.|+++++.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            442           455555555555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.46  E-value=0.00041  Score=51.94  Aligned_cols=97  Identities=12%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765          123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY----------EEVKRIFTEFPKVYGIEPNSETYNKVIKSF  192 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  192 (401)
                      +.+.+++|.+.++...+.. +.+...|..+..++...+++          ++|+..|++..+..  +.+..+|..+..+|
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence            4455666666666666654 44666666666666655543          46666666665442  22344566666666


Q ss_pred             HhcC-----------ChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 015765          193 CESG-----------DSSSVYSILAEMRRKSIRPNATDFGLLL  224 (401)
Q Consensus       193 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll  224 (401)
                      ...|           ++++|.+.|++..+.  .|+...|...+
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al  131 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            6553           566666666666553  44444443333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.43  E-value=0.0009  Score=46.14  Aligned_cols=65  Identities=12%  Similarity=0.068  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      +...+..+...|...|++++|.+.|++.++.. +.+...|..+..+|...|++++|.+.+++..+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56777888888888888888888888888754 234567888888888888888888888877654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.20  E-value=0.0014  Score=44.93  Aligned_cols=86  Identities=9%  Similarity=0.103  Sum_probs=58.4

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015765          293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSY-CFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS  371 (401)
Q Consensus       293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  371 (401)
                      ....+...|++++|.+.+++..+.. +.+.. .+..+..+|...|++++|.+.|++..+.. +.+...+..        +
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~   75 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence            4456677889999999998888753 23456 77888888888899999999998888764 222333311        5


Q ss_pred             CHHHHHHHHHHHHhcCC
Q 015765          372 KVAEANELIGLMKKRFP  388 (401)
Q Consensus       372 ~~~~a~~~~~~~~~~~~  388 (401)
                      .+.++...+++.....|
T Consensus        76 ~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             HHHHHHHHHCCTTHHHH
T ss_pred             HHHHHHHHHHHHhccCc
Confidence            55666666665554433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.13  E-value=0.0015  Score=58.34  Aligned_cols=64  Identities=11%  Similarity=0.114  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhchhh----cC-CCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765          147 DALNALLLGCILSKNYEEVKRIFTEFPKV----YG-IEPNS-ETYNKVIKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                      .+++.|..+|...|++++|+.++++..+-    .| -.|+. .+++.|...|...|++++|..++++..+
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            44555666666666666666665555321    11 12222 3456666666666666666666665543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.11  E-value=0.0024  Score=57.07  Aligned_cols=86  Identities=7%  Similarity=-0.105  Sum_probs=46.5

Q ss_pred             CCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-----CC--CCCCHHHHHHHHH
Q 015765           88 ANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-----YG--LRQSVDALNALLL  154 (401)
Q Consensus        88 ~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~  154 (401)
                      .|++++|+.++++...      .+..+....+++.+..+|...|++++|+.++++.++     .|  .+....+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            3555666655555441      122222345566666666666666666666665543     22  1112344566666


Q ss_pred             HHHhcCCHHHHHHHHHhch
Q 015765          155 GCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       155 ~~~~~~~~~~a~~~~~~~~  173 (401)
                      .|...|++++|+.++++..
T Consensus       391 ~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHH
Confidence            6666666666666666554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.11  E-value=0.00065  Score=46.60  Aligned_cols=58  Identities=21%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLD-TYKHLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                      ....+.+.|++++|...|++..+... .+.. .+..+..+|...|++++|.+.|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            44566777888888888888777632 2456 7777777888888888888888887765

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.10  E-value=0.0032  Score=46.58  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHH
Q 015765          305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG---EYETALKVCRASMAKGWVP--HFSTMKSLVTGLASISKVAEANEL  379 (401)
Q Consensus       305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~  379 (401)
                      .+.+-|.+..+.| .++..+...+..++++.+   ++++++.++++..+.. .|  +...+..+.-+|.+.|++++|.++
T Consensus        16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            3444444444433 244555555555555555   3445555555555543 12  234444455555555666666666


Q ss_pred             HHHHHhcCCCC
Q 015765          380 IGLMKKRFPKS  390 (401)
Q Consensus       380 ~~~~~~~~~~~  390 (401)
                      ++.+.+..|.|
T Consensus        94 ~~~lL~ieP~n  104 (152)
T 1pc2_A           94 VRGLLQTEPQN  104 (152)
T ss_dssp             HHHHHHHCTTC
T ss_pred             HHHHHhcCCCC
Confidence            66655555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.06  E-value=0.0035  Score=56.02  Aligned_cols=93  Identities=15%  Similarity=0.010  Sum_probs=58.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhchhh----cC-CCCC-HHh
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKY---GLRQ----SVDALNALLLGCILSKNYEEVKRIFTEFPKV----YG-IEPN-SET  184 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~-~~~  184 (401)
                      +..+.+.|++++|+.++++.++.   -+.+    ...+++.+...|...|++++|+.++++..+-    .| ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34455667777777777776541   1122    2456677777777778888777777766432    11 1233 235


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765          185 YNKVIKSFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       185 ~~~l~~~~~~~~~~~~a~~~~~~~~~  210 (401)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            67777778888888888877777644

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.03  E-value=0.0046  Score=41.85  Aligned_cols=51  Identities=6%  Similarity=-0.073  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 015765          338 YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPK  389 (401)
Q Consensus       338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  389 (401)
                      .++|..++++..+.. +-++.....+...+.+.|++++|+..|+++.+..|+
T Consensus        25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            344555555444443 233444444444444555555555555555444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.02  E-value=0.048  Score=38.96  Aligned_cols=139  Identities=10%  Similarity=0.058  Sum_probs=72.7

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 015765          194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA  273 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  273 (401)
                      -.|.+++..+++.+..+..   +..-|+.+|--....-+-+-..++++.+-+.   .|..          .+|+......
T Consensus        19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHH
Confidence            3466666666666665432   4444555555444444444444444444221   1111          1223322222


Q ss_pred             HHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 015765          274 LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW  353 (401)
Q Consensus       274 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  353 (401)
                      -+-.+-     .+...+...+......|+-++-.+++.++... .+|++.....+..+|.+.|+..+|.+++.++.+.|+
T Consensus        83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            222111     13334455556666667777777777665432 356666666777777777777777777777777664


Q ss_pred             C
Q 015765          354 V  354 (401)
Q Consensus       354 ~  354 (401)
                      +
T Consensus       157 k  157 (172)
T 1wy6_A          157 K  157 (172)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.00  E-value=0.0046  Score=42.91  Aligned_cols=66  Identities=11%  Similarity=0.036  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG------CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      +..-+..+...+.+.|++..|...|+...+.-      -.+....+..+..++.+.|+++.|..+++++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44556667777777778888877777766431      1234556677777777777777777777777654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.99  E-value=0.019  Score=56.03  Aligned_cols=27  Identities=4%  Similarity=-0.216  Sum_probs=13.4

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015765          252 VNVYNIRIQSLCKLKRSEEAKALLDGM  278 (401)
Q Consensus       252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~  278 (401)
                      ...|..+...+.+.++++.|.+.|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            344555555555555555555555444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.95  E-value=0.015  Score=50.14  Aligned_cols=169  Identities=11%  Similarity=0.008  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHh--CC---CchHHHHHHHHhh-hCCCCCCchhHH
Q 015765           41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQ--AN---HFNAISQLLEELK-TRPDLRQNERFH  114 (401)
Q Consensus        41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~-~~~~~~~~~~~~  114 (401)
                      ....+...+...-...++......      .+.+...|...+.+...  .+   +..+|+.+|++.. ..|+...   .+
T Consensus       166 i~~~I~~aL~~~l~~~e~~r~~~~------~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~---A~  236 (372)
T 3ly7_A          166 LLESLSKALNQPWPQRMQETLQKI------LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY---AR  236 (372)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHH------SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred             HHHHHHHHhCchhhHHHHHHHhcc------CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH---HH
Confidence            344455555544433333333322      12245566666655433  33   3577999999988 4444433   44


Q ss_pred             HHHHHHHH----hcC-C---hHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH
Q 015765          115 VHSIVLYG----QAN-M---IDHAMQTFEEMDK-YGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY  185 (401)
Q Consensus       115 ~~li~~~~----~~~-~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  185 (401)
                      ..+..+|.    ..+ .   .......+..... ...+.+..+|..+...+...|++++|...+++....   .|+...|
T Consensus       237 A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~  313 (372)
T 3ly7_A          237 AEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNY  313 (372)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHH
T ss_pred             HHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHH
Confidence            43333331    111 1   1111122222111 112667888888877777789999999999999876   4788888


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 015765          186 NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLL  223 (401)
Q Consensus       186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  223 (401)
                      ..+...+.-.|++++|.+.|++....  .|...+|...
T Consensus       314 ~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~  349 (372)
T 3ly7_A          314 VLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI  349 (372)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence            88888899999999999999998775  5666665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.91  E-value=0.0042  Score=55.53  Aligned_cols=93  Identities=2%  Similarity=-0.105  Sum_probs=63.7

Q ss_pred             HHHHHhCCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-----CC--CCCCHHH
Q 015765           82 VSKLSQANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-----YG--LRQSVDA  148 (401)
Q Consensus        82 ~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~  148 (401)
                      +..+.+.|++++|++++++...      .+..+....+++.+...|...|++++|+.++++.++     .|  .+....+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            4556677888888888877762      122233356677778888888888888888877654     23  1122455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765          149 LNALLLGCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       149 ~~~l~~~~~~~~~~~~a~~~~~~~~~  174 (401)
                      ++.|...|...|++++|+.++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77788888888888888888777643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.87  E-value=0.019  Score=56.12  Aligned_cols=128  Identities=10%  Similarity=0.090  Sum_probs=81.6

Q ss_pred             HHHhcCChhHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 015765          191 SFCESGDSSSVYS-ILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE  269 (401)
Q Consensus       191 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  269 (401)
                      .....+++++|.+ ++..     ++ +......++..+.+.|.++.|.++.+.-            ..-.......|+++
T Consensus       608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~  669 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT  669 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence            3345677777766 4421     11 1222366667777888888877665311            11133456779999


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM  349 (401)
Q Consensus       270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  349 (401)
                      .|.++.+.+      .+...|..+...+.+.|+++.|.+.|.++..         |..+...+...|+.+...++.+.+.
T Consensus       670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence            999986543      3678999999999999999999999998753         3344444444555555555544444


Q ss_pred             HC
Q 015765          350 AK  351 (401)
Q Consensus       350 ~~  351 (401)
                      ..
T Consensus       735 ~~  736 (814)
T 3mkq_A          735 TT  736 (814)
T ss_dssp             HT
T ss_pred             Hc
Confidence            43

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.85  E-value=0.034  Score=47.91  Aligned_cols=72  Identities=8%  Similarity=-0.046  Sum_probs=38.7

Q ss_pred             CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 015765          215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTY  290 (401)
Q Consensus       215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  290 (401)
                      .+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|...|++....  .|...+|
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence            344455555444444566666666666665553  44444555555555566666666666655554  3344443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.60  E-value=0.11  Score=37.14  Aligned_cols=149  Identities=11%  Similarity=0.085  Sum_probs=92.9

Q ss_pred             HHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765          113 FHVHSIVL--YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK  190 (401)
Q Consensus       113 ~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  190 (401)
                      +...|+.+  ..-.|..++..++..+....   .+..-+|.+|.-....-+-+-..++++.+-+-+    |..       
T Consensus         7 l~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Dis-------   72 (172)
T 1wy6_A            7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DLD-------   72 (172)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CGG-------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----CcH-------
Confidence            33444443  34567778888888777663   356667777766666677777777777664432    221       


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765          191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE  270 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  270 (401)
                         ..|++......+-.+     ..+...+...++.+...|+.++..+++..+... .+|+....-.+..+|.+.|+..+
T Consensus        73 ---~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~  143 (172)
T 1wy6_A           73 ---KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERD  143 (172)
T ss_dssp             ---GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             ---hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhh
Confidence               234455544444432     124455566667777777777777777775442 35566667777777777777777


Q ss_pred             HHHHHHHHHHCCCC
Q 015765          271 AKALLDGMLSRGIK  284 (401)
Q Consensus       271 a~~~~~~~~~~~~~  284 (401)
                      +.+++.+.-+.|++
T Consensus       144 a~eLl~~AC~kG~k  157 (172)
T 1wy6_A          144 ATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhhH
Confidence            77777777777754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.50  E-value=0.051  Score=36.58  Aligned_cols=47  Identities=13%  Similarity=0.106  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765          127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  174 (401)
                      .++|..++++.++.. +.+......+...+.+.|++++|+..|+++.+
T Consensus        25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            355555555554443 33444444444555555555555555555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.11  Score=39.37  Aligned_cols=130  Identities=9%  Similarity=0.005  Sum_probs=92.8

Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChH
Q 015765          225 AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE  304 (401)
Q Consensus       225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~  304 (401)
                      ......|+++.|.++.+.+      .+...|..+.......|+++-|.+.|.+..+         +..+.-.|...|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            4456789999999987765      3678899999999999999999999987653         344555566678888


Q ss_pred             HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      +..++-+.....|      -++.....+.-.|+++++.+++.+   .|--|..      +......|-.+.|.++.+++.
T Consensus        78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA------~~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLA------YAVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence            8777766666554      356666677788999999999854   3322211      111223577788888887763

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.22  Score=37.75  Aligned_cols=100  Identities=7%  Similarity=0.035  Sum_probs=57.5

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015765          192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA  271 (401)
Q Consensus       192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  271 (401)
                      ..+.|+++.|.++.+++      .+...|..+.......|+++-|++.|....+         +..+.-.|.-.|+.+..
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            34556666666666554      2456666666666666676666666665433         44455555556666665


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015765          272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS  312 (401)
Q Consensus       272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  312 (401)
                      .++-+.....|-      ++.....+...|+++++.++|.+
T Consensus        80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555444431      33334444556666666666643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.32  E-value=0.037  Score=38.17  Aligned_cols=67  Identities=6%  Similarity=-0.124  Sum_probs=41.8

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-----CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRP-----DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY  140 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  140 (401)
                      +...+..+...+.+.|+++.|...|+......     .......++..+..+|.+.|+++.|...+++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34455566677777777777777777665211     11233556666667777777777777777776655

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.29  E-value=0.066  Score=39.55  Aligned_cols=82  Identities=7%  Similarity=-0.027  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhchhhcCCCC--CHHhHHHHHHHHHhcCChhHH
Q 015765          127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK---NYEEVKRIFTEFPKVYGIEP--NSETYNKVIKSFCESGDSSSV  201 (401)
Q Consensus       127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a  201 (401)
                      ...+.+-|.+..+.| .++..+...+..++++.+   ++++++.++++..+..  .|  +...+-.+.-+|.+.|++++|
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence            445566666666655 467777777777888777   5668888888877652  24  244555666677888888888


Q ss_pred             HHHHHHHHhC
Q 015765          202 YSILAEMRRK  211 (401)
Q Consensus       202 ~~~~~~~~~~  211 (401)
                      .+.++.+.+.
T Consensus        91 ~~y~~~lL~i  100 (152)
T 1pc2_A           91 LKYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            8888888764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.18  E-value=0.03  Score=39.78  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHH
Q 015765          303 LEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET---ALKVCRASMAKGWV-PHFSTMKSLVTGLASISKVAEANE  378 (401)
Q Consensus       303 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~  378 (401)
                      ...+.+-|......| .++..+-..+..++.+..+...   ++.+++.....+-+ -.......|.-++.+.|++++|.+
T Consensus        17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            334444444444433 2555555566666666665444   66666666654311 133444555666677777777777


Q ss_pred             HHHHHHhcCCCCc
Q 015765          379 LIGLMKKRFPKSG  391 (401)
Q Consensus       379 ~~~~~~~~~~~~~  391 (401)
                      +++.+++..|.|.
T Consensus        96 ~~~~lL~~eP~n~  108 (126)
T 1nzn_A           96 YVRGLLQTEPQNN  108 (126)
T ss_dssp             HHHHHHHHCTTCH
T ss_pred             HHHHHHHhCCCCH
Confidence            7777777666554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.10  E-value=0.48  Score=39.20  Aligned_cols=130  Identities=10%  Similarity=0.081  Sum_probs=80.1

Q ss_pred             hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH-HHHhc--CC------hhHHHHHHHHHHhCCCCCC---HHhHHHHHH
Q 015765          158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK-SFCES--GD------SSSVYSILAEMRRKSIRPN---ATDFGLLLA  225 (401)
Q Consensus       158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~------~~~a~~~~~~~~~~~~~~~---~~~~~~ll~  225 (401)
                      +.++..+..+.+.+..+.   .+....|..++. .+...  |+      ...|...+++..+.  .|+   ...|..+..
T Consensus       133 ~~~~~~~~~~~l~~~~~~---dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~  207 (301)
T 3u64_A          133 FSGDEQRLHKVLSRCTRV---DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTK  207 (301)
T ss_dssp             TSSCHHHHHHHHTTCCGG---GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHH
T ss_pred             HhcchhhHHHHHHHcCcc---ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHH
Confidence            344555555555555321   233345554443 33332  33      34566666666654  444   456777777


Q ss_pred             HHHc-----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC--cCHHHHHH
Q 015765          226 GFYK-----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL-KRSEEAKALLDGMLSRGIK--PNLDTYKH  292 (401)
Q Consensus       226 ~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--p~~~~~~~  292 (401)
                      .|.+     -|+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++.......  |+....+.
T Consensus       208 lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~  282 (301)
T 3u64_A          208 FYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI  282 (301)
T ss_dssp             HHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred             HHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence            7777     388888888888888865333467777777777774 8888888888888887655  55444443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.51  Score=42.26  Aligned_cols=189  Identities=14%  Similarity=0.101  Sum_probs=97.4

Q ss_pred             CCchHHHHHHHHhh----hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHH----hc
Q 015765           89 NHFNAISQLLEELK----TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-YGLRQSVDALNALLLGCI----LS  159 (401)
Q Consensus        89 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~  159 (401)
                      |+++.|++.+-.+.    ...+..........++..|...|+++...+.+.-+.+ +|..  ......+++.+.    ..
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence            77888888775554    2445555577788888888888998888777766544 3322  222233333222    12


Q ss_pred             C--CHHHHHHHHHhchhhc--CCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---HHhHHHHHHHH
Q 015765          160 K--NYEEVKRIFTEFPKVY--GIEPN---SETYNKVIKSFCESGDSSSVYSILAEMRRK--SIRPN---ATDFGLLLAGF  227 (401)
Q Consensus       160 ~--~~~~a~~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~  227 (401)
                      .  +.+.-..+.+......  .+-..   ......|...+...|++.+|.+++..+...  |....   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            2  2222233333332110  01111   112244566666777777777777776432  21111   12444555666


Q ss_pred             HccCChHHHHHHHHHHHH----cCCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          228 YKEHKYEDVGKVLQMMEK----CGIASG--VNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       228 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      ...+++..|..++.++..    ...+|+  ...+...+..+...+++.+|.+.|.++.
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            666666666666665532    111111  1234445555555666666666555554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.94  E-value=0.05  Score=36.43  Aligned_cols=49  Identities=12%  Similarity=0.131  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          339 ETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       339 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      -+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++.++.+.
T Consensus        27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~   75 (109)
T 1v54_E           27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   75 (109)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            3444444444444455555555555555555555555555555555443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.79  E-value=0.68  Score=38.34  Aligned_cols=95  Identities=7%  Similarity=0.054  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhchhhcCCCCC---HHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-CC
Q 015765          162 YEEVKRIFTEFPKVYGIEPN---SETYNKVIKSFCES-----GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE-HK  232 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~  232 (401)
                      ...|...+++..+.   .|+   -..|..+...|.+.     |+.++|.+.|++.+..+..-+..++......++.. |+
T Consensus       179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            46777777777654   666   45789999999984     99999999999998864322477888888888885 99


Q ss_pred             hHHHHHHHHHHHHcCCC--CCchhHHHHH
Q 015765          233 YEDVGKVLQMMEKCGIA--SGVNVYNIRI  259 (401)
Q Consensus       233 ~~~a~~~~~~~~~~~~~--~~~~~~~~ll  259 (401)
                      .+++.+.+++.......  |+....+.+-
T Consensus       256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~~  284 (301)
T 3u64_A          256 RAGFDEALDRALAIDPESVPHNKLLVILS  284 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence            99999999999997655  6555444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.49  E-value=0.24  Score=36.27  Aligned_cols=63  Identities=13%  Similarity=0.266  Sum_probs=39.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015765          301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT  365 (401)
Q Consensus       301 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  365 (401)
                      +++++|.++|+.+++.+-+- ...|......-.+.|+.+.|.+++.+.+..+..| ...+...+.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~  136 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR  136 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence            67777777777776542222 5566666666677778888888887777766443 334443333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.35  E-value=0.25  Score=36.13  Aligned_cols=64  Identities=13%  Similarity=0.037  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765          266 KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF  331 (401)
Q Consensus       266 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  331 (401)
                      +++++|.++|+.+....-+. ...|....+.-.+.|+..+|.+++...+..+.+|. ..+...+.-
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~n  137 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRN  137 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHh
Confidence            67777777777776543222 55666666666677888888888888777664443 344444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.09  E-value=2.8  Score=41.05  Aligned_cols=20  Identities=10%  Similarity=0.189  Sum_probs=9.7

Q ss_pred             HHHccCChHHHHHHHHHHHH
Q 015765          226 GFYKEHKYEDVGKVLQMMEK  245 (401)
Q Consensus       226 ~~~~~~~~~~a~~~~~~~~~  245 (401)
                      +|+..|+.....+++..+.+
T Consensus       569 AyaGTGn~~aIq~LL~~~~~  588 (963)
T 4ady_A          569 AYAGTGNNSAVKRLLHVAVS  588 (963)
T ss_dssp             HTTTSCCHHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHhcc
Confidence            34445555444445555443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=95.03  E-value=0.13  Score=36.48  Aligned_cols=57  Identities=11%  Similarity=0.154  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      +..+-++.+...++.|++.+..+-+++|.+.+|+..|.++|+-++.+..+....|..
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y  127 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPY  127 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHH
Confidence            344444444444555555555555555555555555555555555553333333433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.93  E-value=0.52  Score=44.95  Aligned_cols=128  Identities=15%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhC------CCCCCH-----
Q 015765          256 NIRIQSLCKLKR-SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG-NLEGAKKLFASMTNG------GCEPDS-----  322 (401)
Q Consensus       256 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~------~~~~~~-----  322 (401)
                      ..++..+...++ ++.|..+|+++......-+......++..+...+ +--+|.+++.+..+.      ...+..     
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            334444444555 4667778877776632212222223333333332 222344554444321      111111     


Q ss_pred             ------hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          323 ------YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       323 ------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                            .....-...|...|+++.|.++-++....- +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                  122222455677899999999998888763 5567889999999999999999998888763

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.80  E-value=0.69  Score=33.50  Aligned_cols=72  Identities=8%  Similarity=0.067  Sum_probs=40.1

Q ss_pred             CCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          319 EPDSYCFFMFTYFLCQGGE---YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       319 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      .|+..+-.....++.+..+   ..+++.+++.....+..-.......|.-++.+.|++++|.++.+.+++..|.|
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            3555555555555555543   33556666665554322233444455566666666666666666666666555

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.57  E-value=0.32  Score=34.76  Aligned_cols=73  Identities=8%  Similarity=0.068  Sum_probs=42.4

Q ss_pred             CCCHhhHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          319 EPDSYCFFMFTYFLCQGGEY---ETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       319 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      .|+..+-.....++.+..+.   .+++.++++..+.+..-....+-.|.-++.+.|++++|.++.+.+.+..|.|.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            45555555555555555433   35666666666554212344555566666677777777777777776666553

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.52  E-value=0.77  Score=40.28  Aligned_cols=131  Identities=15%  Similarity=0.057  Sum_probs=73.6

Q ss_pred             CCccHhHHHHHHHHHH---hCCCchHHHHHHHHhhh--CCCCCCchhHHHHHHHHHHhcCChH-HHHHHHHHHhhCCCCC
Q 015765           71 SPLDRMAFSIAVSKLS---QANHFNAISQLLEELKT--RPDLRQNERFHVHSIVLYGQANMID-HAMQTFEEMDKYGLRQ  144 (401)
Q Consensus        71 ~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~  144 (401)
                      ...|...|..++....   ..|+.+.|.+.+++...  .+...++..           ...+- ....-+++..      
T Consensus       108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~------  170 (388)
T 2ff4_A          108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK------  170 (388)
T ss_dssp             GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH------
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH------
Confidence            3446666666655433   45788888888887762  222222110           01111 1111222221      


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHh
Q 015765          145 SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR-----KSIRPNATD  219 (401)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  219 (401)
                       ..+...++..+...|+.+++...+..+....  +.+...|..+|.++.+.|+..+|++.|+.+.+     .|+.|+..+
T Consensus       171 -~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          171 -VLAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence             1233445666667777777777777766543  55666777777777777777777777776543     367776665


Q ss_pred             HH
Q 015765          220 FG  221 (401)
Q Consensus       220 ~~  221 (401)
                      -.
T Consensus       248 ~~  249 (388)
T 2ff4_A          248 RA  249 (388)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.33  E-value=4.3  Score=39.77  Aligned_cols=153  Identities=10%  Similarity=0.075  Sum_probs=73.0

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH--HHHHHccCChHHHHHHHHHHHHcCCCCCchhH--HHHHHHHHhcCC
Q 015765          192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLL--LAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY--NIRIQSLCKLKR  267 (401)
Q Consensus       192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~  267 (401)
                      ++-.|+-+....++..+.+..   +......+  .-++...|+.+.+..+++.+.... .|....-  .++.-+|+..|+
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred             hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence            334555555566665555431   22222222  233345667777776666665531 2221111  123345556677


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHH
Q 015765          268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY-ETALKVCR  346 (401)
Q Consensus       268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~  346 (401)
                      .....+++..+.... ..++...-.+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++...+.
T Consensus       576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            666666777766542 1122222233333444566666666665555443 33333333333333333332 56666666


Q ss_pred             HHHH
Q 015765          347 ASMA  350 (401)
Q Consensus       347 ~~~~  350 (401)
                      .+..
T Consensus       654 ~L~~  657 (963)
T 4ady_A          654 PLTK  657 (963)
T ss_dssp             HHHT
T ss_pred             HHcc
Confidence            6653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.27  E-value=0.32  Score=34.55  Aligned_cols=85  Identities=5%  Similarity=-0.040  Sum_probs=54.4

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhchhhcCCCC--CHHhHHHHHHHHHhcCCh
Q 015765          124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE---VKRIFTEFPKVYGIEP--NSETYNKVIKSFCESGDS  198 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~  198 (401)
                      ......+.+-|......| .++..+-..+..+++++++...   ++.+++.+.+..  .|  .....-.+.-++.+.|++
T Consensus        14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence            344555566666555555 3677777777777777776555   777777776531  13  223444566677788888


Q ss_pred             hHHHHHHHHHHhC
Q 015765          199 SSVYSILAEMRRK  211 (401)
Q Consensus       199 ~~a~~~~~~~~~~  211 (401)
                      +.|.+.++.+.+.
T Consensus        91 ~~A~~~~~~lL~~  103 (126)
T 1nzn_A           91 EKALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888887764

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.56  E-value=4.8  Score=37.63  Aligned_cols=324  Identities=9%  Similarity=0.019  Sum_probs=179.3

Q ss_pred             hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765           38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS  117 (401)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  117 (401)
                      ....+..+...+.. ++...+..+...+...| ..| -..|..+...+ ......++..+++.   .++.|.....-...
T Consensus         6 ~~~~~~~a~~a~~~-~~~~~~~~l~~~l~~~p-L~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~---~~~~p~~~~Lr~~~   78 (618)
T 1qsa_A            6 QRSRYAQIKQAWDN-RQMDVVEQMMPGLKDYP-LYP-YLEYRQITDDL-MNQPAVTVTNFVRA---NPTLPPARTLQSRF   78 (618)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHSGGGTTST-THH-HHHHHHHHHTG-GGCCHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHhhcCCC-cHH-HHHHHHHHhCc-ccCCHHHHHHHHHH---CCCChhHHHHHHHH
Confidence            34456666666654 66777777766653332 221 22444443322 22245555555554   66666656666777


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD  197 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (401)
                      +..+.+.+++...+..+.. .    +.+...-.....+....|+..+|......+-...  ......+..++..+.+.|.
T Consensus        79 l~~l~~~~~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~  151 (618)
T 1qsa_A           79 VNELARREDWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGK  151 (618)
T ss_dssp             HHHHHHTTCHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCC
Confidence            8888888888887775553 1    5566666677888888899877777666654332  3334567788888887775


Q ss_pred             hhH--HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc---------CCCCCch---hHHHHHHHHH
Q 015765          198 SSS--VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC---------GIASGVN---VYNIRIQSLC  263 (401)
Q Consensus       198 ~~~--a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~---~~~~ll~~~~  263 (401)
                      +..  ...-++.+...|   +...-..++... . .+.....+.+..+.+.         ...++..   .+...+.-+.
T Consensus       152 lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rla  226 (618)
T 1qsa_A          152 QDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVA  226 (618)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHH
Confidence            543  223333333332   111111111111 0 0010000111111110         0122222   1222233333


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHH----HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 015765          264 KLKRSEEAKALLDGMLSRGIKPNLDT----YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE  339 (401)
Q Consensus       264 ~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  339 (401)
                      + .+.+.|...+....+.+ ..+...    +..+.......+...++...+......  ..+.....-.+....+.|+++
T Consensus       227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~  302 (618)
T 1qsa_A          227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRR  302 (618)
T ss_dssp             H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHH
T ss_pred             h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHH
Confidence            3 47899999998886543 223322    233333444455355666666665543  244444444555556789999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      .|...|+.|.... .......--+.+++...|+.++|..+|..+.+
T Consensus       303 ~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          303 GLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            9999998876542 22455566677888889999999999998875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.52  E-value=2.1  Score=43.58  Aligned_cols=146  Identities=14%  Similarity=0.080  Sum_probs=91.8

Q ss_pred             HHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-----------------
Q 015765           80 IAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL-----------------  142 (401)
Q Consensus        80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------------  142 (401)
                      .++..+.+.+.++.+.++.......      ....-.+..+|...|++++|.+.|.+... |+                 
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~~~------~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLNSD------PIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccCC------cHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence            4566677777777777665553311      11223345567777888888887766421 11                 


Q ss_pred             ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-H--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 015765          143 ------RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-S--ETYNKVIKSFCESGDSSSVYSILAEMRRKSI  213 (401)
Q Consensus       143 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  213 (401)
                            ..-..-|..++..+-+.+.++.+.++-....+..+..++ .  ..|..+.+.+...|++++|...+-.+.....
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                  112244777888888888888888777665544221211 1  2578888999999999999999988876543


Q ss_pred             CCCHHhHHHHHHHHHccCChH
Q 015765          214 RPNATDFGLLLAGFYKEHKYE  234 (401)
Q Consensus       214 ~~~~~~~~~ll~~~~~~~~~~  234 (401)
                      +  ......++...|..|+.+
T Consensus       970 r--~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          970 K--KSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             C--HHHHHHHHHHHHHHCCHH
T ss_pred             H--HHHHHHHHHHHHhCCChh
Confidence            3  445556666666555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.37  E-value=4.2  Score=36.35  Aligned_cols=258  Identities=12%  Similarity=0.063  Sum_probs=151.1

Q ss_pred             CChhHHHHHhhhcc----CCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHH----hc
Q 015765           53 SNPFRILDICCGAS----LAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG----QA  124 (401)
Q Consensus        53 ~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~  124 (401)
                      ++++.|++.+....    ...+..-+......++..|...|+++...+.+..+....+..  ......++..+.    ..
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence            67889988775543    233344567788899999999999999988887776443322  233445554332    23


Q ss_pred             CChHH--HHHHHHHHhh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHH
Q 015765          125 NMIDH--AMQTFEEMDK--YG-LRQ---SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSF  192 (401)
Q Consensus       125 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~  192 (401)
                      ...+.  -..+.+....  .| +-.   .......|...+...|++.+|.+++..+..+..-..+    ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            33332  2222222211  11 111   2234466788899999999999999999655332223    24567788889


Q ss_pred             HhcCChhHHHHHHHHHHh----CCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCchhHHH----HHHH
Q 015765          193 CESGDSSSVYSILAEMRR----KSIRPN--ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASGVNVYNI----RIQS  261 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~----ll~~  261 (401)
                      ...+++..|..++.++..    ....|+  ...+...+..+...+++.+|.+.|.++.+. ....+...+..    ++.+
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~  267 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF  267 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            999999999999998742    222222  234667777888899999999888777442 11112222221    1111


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcC--CChHHHHHHHHH
Q 015765          262 LCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE--GNLEGAKKLFAS  312 (401)
Q Consensus       262 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~  312 (401)
                      ..-.+....-.+++........-++...|..++.+|...  .+++.+.+.|..
T Consensus       268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~  320 (445)
T 4b4t_P          268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP  320 (445)
T ss_dssp             HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred             HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence            122222222233333333322234667777788877643  345555555543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.02  E-value=0.84  Score=43.56  Aligned_cols=129  Identities=12%  Similarity=0.079  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCC-HHHHHHHHHhchhhc-----CCCC-C
Q 015765          112 RFHVHSIVLYGQANM-IDHAMQTFEEMDKYGLRQSVDAL--NALLLGCILSKN-YEEVKRIFTEFPKVY-----GIEP-N  181 (401)
Q Consensus       112 ~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~~-----~~~~-~  181 (401)
                      .....++..+...++ .+.|..+|+++.+..  |...++  ..++..+...++ --+|.+++.+..+..     ..++ +
T Consensus       249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~  326 (754)
T 4gns_B          249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD  326 (754)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence            344556666666666 577888888887763  332222  233333333322 223444443332210     1111 1


Q ss_pred             H----------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          182 S----------ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       182 ~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                      .          ...+.-...+...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.+..+
T Consensus       327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            1          11222234456688888899888888765 3445778899999999999999988887766

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.82  E-value=1  Score=40.28  Aligned_cols=122  Identities=7%  Similarity=0.049  Sum_probs=85.3

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +..+|..+-.+|...+.+..|.-.--.+...++..+      .++..|-+.|.+++-+.+++.-.... ......|+-|.
T Consensus       198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~------elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa  270 (624)
T 3lvg_A          198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE------ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA  270 (624)
T ss_dssp             SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCS------GGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred             ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHH------HHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence            566899999999999999888877666664443333      46777888899999999998877433 46777888888


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCC------HHhHHHHHHHHHhcCChhHHHH
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPN------SETYNKVIKSFCESGDSSSVYS  203 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~  203 (401)
                      -.|++- .+++..+.++....+.+++.-      ...|.-++-.|++-.++|.|..
T Consensus       271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            777766 566666666666544444332      2346667777777777776544

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.77  E-value=3.9  Score=34.36  Aligned_cols=18  Identities=11%  Similarity=-0.114  Sum_probs=10.4

Q ss_pred             HhcCCChHHHHHHHHHHH
Q 015765          297 FGKEGNLEGAKKLFASMT  314 (401)
Q Consensus       297 ~~~~~~~~~a~~~~~~m~  314 (401)
                      |...|+...|..+++...
T Consensus       198 yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          198 YLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHTTBHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHH
Confidence            334566666666666543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.69  E-value=1.9  Score=37.73  Aligned_cols=66  Identities=11%  Similarity=-0.051  Sum_probs=30.3

Q ss_pred             HHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHHHH
Q 015765          294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK-----GWVPHFSTM  360 (401)
Q Consensus       294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~  360 (401)
                      +..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|++..+.     |+.|...+-
T Consensus       178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            344444455555554444444321 224444555555555555555555554443321     555554443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.68  E-value=3.7  Score=41.81  Aligned_cols=142  Identities=12%  Similarity=-0.012  Sum_probs=68.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC--------------
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN--------------  181 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------  181 (401)
                      .++..+...+.++.+.++....     +.+...-..+..+|...|++++|.+.|.+...  |+..+              
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhccccccc
Confidence            3444455556665555544332     22333334455667777777777777766522  11111              


Q ss_pred             ---------HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 015765          182 ---------SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA----TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI  248 (401)
Q Consensus       182 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  248 (401)
                               ..-|..++..+-+.+.++.+.++-....+.....+.    ..|..+.+.+...|++++|...+-.+.+...
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                     012344555555555555555555444332111111    1355555666666666666655555544322


Q ss_pred             CCCchhHHHHHHHHHhcC
Q 015765          249 ASGVNVYNIRIQSLCKLK  266 (401)
Q Consensus       249 ~~~~~~~~~ll~~~~~~~  266 (401)
                        -......++..+|..|
T Consensus       970 --r~~cLr~LV~~lce~~  985 (1139)
T 4fhn_B          970 --KKSCLLDFVNQLTKQG  985 (1139)
T ss_dssp             --CHHHHHHHHHHHHHHC
T ss_pred             --HHHHHHHHHHHHHhCC
Confidence              2234444444444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.58  E-value=2.3  Score=31.75  Aligned_cols=62  Identities=15%  Similarity=0.052  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 015765           77 AFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQN---ERFHVHSIVLYGQANMIDHAMQTFEEMD  138 (401)
Q Consensus        77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~  138 (401)
                      .+-.-+..+...|.++.|+-+.+.+..    .++..+.   ..++..+..++...|+|..|...|++.+
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            444456677777777777777766552    2222111   1234455566777888888888887754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.33  E-value=6.9  Score=34.15  Aligned_cols=16  Identities=6%  Similarity=-0.101  Sum_probs=10.1

Q ss_pred             CHHHHHHHHHHHHHCC
Q 015765          337 EYETALKVCRASMAKG  352 (401)
Q Consensus       337 ~~~~a~~~~~~~~~~~  352 (401)
                      ..++++..+.+|+..|
T Consensus       329 s~~evE~~L~~lI~dg  344 (394)
T 3txn_A          329 PMPQVEKKLSQMILDK  344 (394)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            4566666666666654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.27  E-value=7  Score=34.11  Aligned_cols=166  Identities=8%  Similarity=-0.010  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHhchhhcCCCCCHHhH
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYG-LRQ---SVDALNALLLGCILS-KNYEEVKRIFTEFPKVYGIEPNSETY  185 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~  185 (401)
                      +.....+...|.+.|+.++..+++......= .-+   .......+++.+... +..+.-.++..+..+..  .-+..+|
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~r~f   96 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA--KQEKRTF   96 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH--HHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--HHHHHHH
Confidence            4556667777888888888888877764311 111   223345566666553 33333344443333211  1111222


Q ss_pred             ------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCc
Q 015765          186 ------NKVIKSFCESGDSSSVYSILAEMRRKSIRPN-----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIASGV  252 (401)
Q Consensus       186 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~  252 (401)
                            .-++..|...|++.+|.+++.++.+.--..|     ...+..-+..|...+++.++...+......  .+.++.
T Consensus        97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p  176 (394)
T 3txn_A           97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP  176 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence                  1456677777777777777777655311112     123444556666777777777777665432  121222


Q ss_pred             hhHHH----HHHHHH-hcCCHHHHHHHHHHH
Q 015765          253 NVYNI----RIQSLC-KLKRSEEAKALLDGM  278 (401)
Q Consensus       253 ~~~~~----ll~~~~-~~~~~~~a~~~~~~~  278 (401)
                      .....    -...+. ..+++..|...|-+.
T Consensus       177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          177 KVQGALDLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence            21111    112233 566777776666554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.89  E-value=2.6  Score=28.38  Aligned_cols=50  Identities=14%  Similarity=0.168  Sum_probs=33.6

Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015765          126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  175 (401)
                      +.=++.+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-+...
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44456666666666666777777777777777777777777777766443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=90.51  E-value=0.0079  Score=53.29  Aligned_cols=246  Identities=8%  Similarity=0.045  Sum_probs=158.0

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      .+..|..+..+..+.+++.+|++-|=+.   .+    ...|..+|....+.|.+++-.+.+....+..  .++.+=+.|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~D----ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi  123 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI  123 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC---SC----CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC---CC----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence            4557888999999999888888766332   11    2357788888889999999988887776553  3444556788


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------C
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS--------------------I  213 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~  213 (401)
                      -+|++.++..+.++++    .    .||..-...+..-|...|.++.|.-+|..+..-.                    -
T Consensus       124 ~ayAk~~rL~elEefl----~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK  195 (624)
T 3lvg_A          124 FALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK  195 (624)
T ss_dssp             HHHHTSCSSSTTTSTT----S----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred             HHHHhhCcHHHHHHHH----c----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999988865433222    1    4666666777888888888887777766542211                    1


Q ss_pred             CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 015765          214 RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL  293 (401)
Q Consensus       214 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  293 (401)
                      .-+..||..+-.+|...+++.-|...--.+.-.   ++  -...++..|-..|.+++.+.+++.-... -......|+-|
T Consensus       196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL  269 (624)
T 3lvg_A          196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL  269 (624)
T ss_dssp             CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred             cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence            235678888888888888877665443333221   11  1233567777888888888888876643 23467788888


Q ss_pred             HHHHhcCCChHHHHHHHHHHHhC-CCC------CCHhhHHHHHHHHHccCCHHHHHH
Q 015765          294 IHGFGKEGNLEGAKKLFASMTNG-GCE------PDSYCFFMFTYFLCQGGEYETALK  343 (401)
Q Consensus       294 i~~~~~~~~~~~a~~~~~~m~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~~  343 (401)
                      .-.|++- ++++..+-++..-.. +++      -....|.-++-.|.+-.+++.|..
T Consensus       270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            7777765 555555554433221 111      123456666666666666665543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=88.57  E-value=5.2  Score=28.58  Aligned_cols=46  Identities=15%  Similarity=0.260  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765          129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK  174 (401)
Q Consensus       129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  174 (401)
                      +..+-++.+...++.|++.+..+.+.+|-+.+|+..|..+|+-+..
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~  116 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD  116 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444445555555555666665566666666666666666555543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=88.44  E-value=2.2  Score=31.80  Aligned_cols=124  Identities=7%  Similarity=0.010  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHhcCCChhHHHHHhhhcc----CCCCC-Ccc--HhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCCc
Q 015765           39 KEKKRATIARLKSESNPFRILDICCGAS----LAPES-PLD--RMAFSIAVSKLSQANHFNAISQLLEELKTRP-DLRQN  110 (401)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~  110 (401)
                      ...+..-++.+-..+.++.|.-+.+-+.    .+++. +|.  ..++..+.+++-..|++.+|...|++..... ..+..
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455666777778888888876655432    12211 121  1256677889999999999999999965211 11110


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015765          111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  175 (401)
                      ......+.    .......         ......+...-.-+..+|.+.+++++|+.+++.++..
T Consensus       100 ~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          100 SKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             CCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            11111110    0000000         0111334555555777888888888888888888644

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.25  E-value=7.2  Score=31.78  Aligned_cols=55  Identities=13%  Similarity=0.058  Sum_probs=31.2

Q ss_pred             HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015765           84 KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY  140 (401)
Q Consensus        84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  140 (401)
                      ...+.|++++|++....-++.  .|.|...-..++..+|-.|+++.|.+=++...+.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            344566666666655544422  2444555566666666666666666666555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=85.61  E-value=7.3  Score=27.80  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=11.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHh
Q 015765          292 HLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       292 ~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                      -|.-++.+.|++++|.++.+.+.+
T Consensus        83 yLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           83 YLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHh
Confidence            333444444455555544444444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.30  E-value=16  Score=32.29  Aligned_cols=97  Identities=12%  Similarity=0.008  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHH--
Q 015765          184 TYNKVIKSFCESGDSSSVYSILAEMRRKS--IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIR--  258 (401)
Q Consensus       184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l--  258 (401)
                      +...+...|.+.|+++.|.+.|.++...-  ..--...+-.+++.+...+++..+...+.++...- -.++....+.+  
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            45667777777777777777777776532  22224456667777777777777777776664321 01122111111  


Q ss_pred             --HHHHHhcCCHHHHHHHHHHHHH
Q 015765          259 --IQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       259 --l~~~~~~~~~~~a~~~~~~~~~  280 (401)
                        ...+...+++..|.+.|-+...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence              1122345777777777766544

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=83.99  E-value=7.1  Score=26.17  Aligned_cols=51  Identities=14%  Similarity=0.102  Sum_probs=23.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015765          261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG  317 (401)
Q Consensus       261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  317 (401)
                      .+...|++++|..+.+.+    +.||...|-+|...  +.|..+++..-+.++..+|
T Consensus        49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg   99 (116)
T 2p58_C           49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ   99 (116)
T ss_dssp             HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred             HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence            344455555555544322    24555555444432  3444444444444444433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=83.63  E-value=19  Score=30.46  Aligned_cols=136  Identities=11%  Similarity=0.065  Sum_probs=64.2

Q ss_pred             CCchHHHHHHHHhhhCCCC---CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015765           89 NHFNAISQLLEELKTRPDL---RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV  165 (401)
Q Consensus        89 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  165 (401)
                      +++++.++-++.-...++.   ..-.+.|.++..-|.+.+++++|++++..-.               ..+.+.|+...+
T Consensus        10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg   74 (336)
T 3lpz_A           10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSG   74 (336)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchH
Confidence            3444444444444444544   3334556666666666666666666544322               123344555444


Q ss_pred             HHHH----HhchhhcCCCCCHHhHHHHHHHHHhcCChh-HHHHHHHHH----HhCC--CCCCHHhHHHHHHHHHccCChH
Q 015765          166 KRIF----TEFPKVYGIEPNSETYNKVIKSFCESGDSS-SVYSILAEM----RRKS--IRPNATDFGLLLAGFYKEHKYE  234 (401)
Q Consensus       166 ~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~ll~~~~~~~~~~  234 (401)
                      -++-    +-+ ++.++++|.....-++..+.....-+ .=..+++++    .+.|  ..-|......+...|.+.+++.
T Consensus        75 ~DL~~llvevy-~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~  153 (336)
T 3lpz_A           75 GDLAVLLVDTF-RQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE  153 (336)
T ss_dssp             HHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence            3333    333 33366666666666666555444211 111122222    1112  1224444455555566666655


Q ss_pred             HHHHHH
Q 015765          235 DVGKVL  240 (401)
Q Consensus       235 ~a~~~~  240 (401)
                      +|+..|
T Consensus       154 ~Ae~H~  159 (336)
T 3lpz_A          154 AAEKHL  159 (336)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=83.49  E-value=11  Score=27.62  Aligned_cols=53  Identities=13%  Similarity=0.018  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC
Q 015765          128 DHAMQTFEEMDKYGLRQS-VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN  181 (401)
Q Consensus       128 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  181 (401)
                      +++.++|..|...|+-.. ...|......+-..|++.+|.++|+.-.+. +..|-
T Consensus        82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~  135 (152)
T 4a1g_A           82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR  135 (152)
T ss_dssp             SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred             CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence            347788888887776544 445666677777888888888888877654 44443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=82.51  E-value=6.9  Score=26.19  Aligned_cols=78  Identities=23%  Similarity=0.210  Sum_probs=35.0

Q ss_pred             ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHH
Q 015765          232 KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA  311 (401)
Q Consensus       232 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~  311 (401)
                      ..++|..+-+.+...+.  ...+--+-+..+...|++++|..+.+.+    +.||...|-+|..  .+.|..+++..-+.
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~   92 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA   92 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence            34555555555544432  1111222223344555555555543322    3455555554443  24455555555554


Q ss_pred             HHHhCC
Q 015765          312 SMTNGG  317 (401)
Q Consensus       312 ~m~~~~  317 (401)
                      ++..+|
T Consensus        93 ~la~sg   98 (115)
T 2uwj_G           93 GLGGSS   98 (115)
T ss_dssp             HHHTCS
T ss_pred             HHHhCC
Confidence            554443

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=82.36  E-value=14  Score=28.65  Aligned_cols=53  Identities=19%  Similarity=0.257  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015765          268 SEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP  320 (401)
Q Consensus       268 ~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  320 (401)
                      ..++..+|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus        95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            4444455555544433221 2334444444444455555555555444444333

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=81.22  E-value=14  Score=28.61  Aligned_cols=56  Identities=14%  Similarity=0.057  Sum_probs=35.0

Q ss_pred             cCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC
Q 015765          124 ANMIDHAMQTFEEMDKYGLRQS-VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP  180 (401)
Q Consensus       124 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  180 (401)
                      .+...++.++|..|...|+... ...|......+-..|++.+|.++|+.-.+. +..|
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P  148 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP  148 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence            4446677777777776665433 444555666666777777777777766543 3344

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.99  E-value=21  Score=29.08  Aligned_cols=52  Identities=17%  Similarity=0.123  Sum_probs=22.9

Q ss_pred             HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765          228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  280 (401)
                      .+.|++++++.....-++.. +.|...-..+++.+|-.|++++|.+-++...+
T Consensus         8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34444444444444443332 33344444444444444444444444444443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.18  E-value=10  Score=34.36  Aligned_cols=63  Identities=10%  Similarity=0.125  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCC-CCch---hHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDL-RQNE---RFHVHSIVLYGQANMIDHAMQTFEEMDK  139 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~  139 (401)
                      ..++.++..|...+.++.|..+..+.. .|.. .++.   ..+-.+...+.-.+++.+|.+.+....+
T Consensus       232 ~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r  298 (523)
T 4b4t_S          232 MLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR  298 (523)
T ss_dssp             HHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            455566666666666666666666554 2211 1111   1122233445555666666666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	401
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.38
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.34
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.32
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.3
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.18
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.13
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.82
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.77
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.7
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.64
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.57
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.5
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.4
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.38
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.37
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.33
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.25
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.23
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.15
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.04
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.04
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.98
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.93
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.91
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.91
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.9
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.86
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.84
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.77
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.69
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.6
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.59
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.28
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	97.0
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.79
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.75
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.57
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	95.96
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.61
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.14
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.32
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.89
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.5

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.3e-21  Score=168.63  Aligned_cols=338  Identities=10%  Similarity=0.002  Sum_probs=272.2

Q ss_pred             HHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCCh
Q 015765           48 RLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMI  127 (401)
Q Consensus        48 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  127 (401)
                      ..-+.|+++.|++.++.+...  .|.+...+..+..++.+.|++++|++.++++....  |.+...+..+..+|.+.|++
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccc
Confidence            345668999999999888644  34467789999999999999999999999987432  33467889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHH----------------------------------HHHhcCCHHHHHHHHHhch
Q 015765          128 DHAMQTFEEMDKYGLRQSVDALNALLL----------------------------------GCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~~~~~~  173 (401)
                      ++|+..+....+.. +.+.........                                  .....+....+...+....
T Consensus        84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            99999999988765 223332222222                                  2233344445555555544


Q ss_pred             hhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCch
Q 015765          174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN  253 (401)
Q Consensus       174 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  253 (401)
                      ...  +.+...+..+...+...|+++.|...+++..+.. +-+...+..+...+...|++++|...++.....+ +.+..
T Consensus       163 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  238 (388)
T d1w3ba_         163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV  238 (388)
T ss_dssp             HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred             ccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence            331  3345677788888999999999999999987753 4467788899999999999999999999998875 44667


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015765          254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC  333 (401)
Q Consensus       254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  333 (401)
                      .+..+..++.+.|++++|...|++..+... -+..++..+...+...|++++|.+.++...... +.+...+..+...+.
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence            788899999999999999999999988743 257889999999999999999999999988763 556778889999999


Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765          334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA  397 (401)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  397 (401)
                      ..|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|.+.|++..+..|.+...|..|
T Consensus       317 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l  379 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM  379 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999998764 44677899999999999999999999999999999888877654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-18  Score=153.75  Aligned_cols=306  Identities=12%  Similarity=-0.002  Sum_probs=246.7

Q ss_pred             HHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015765           81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK  160 (401)
Q Consensus        81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  160 (401)
                      +...+.+.|++++|++.++++....  |.+...+..+..+|.+.|++++|...|++..+.. +.+..+|..+..+|.+.|
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence            3456778899999999999988432  4456788999999999999999999999998876 557889999999999999


Q ss_pred             CHHHHHHHHHhchhhcCCCCCHHhHHHHHH----------------------------------HHHhcCChhHHHHHHH
Q 015765          161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIK----------------------------------SFCESGDSSSVYSILA  206 (401)
Q Consensus       161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~~~  206 (401)
                      ++++|+..+....+..  +.+.........                                  .....+....+...+.
T Consensus        82 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence            9999999999886542  222222222222                                  2233344444555555


Q ss_pred             HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015765          207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN  286 (401)
Q Consensus       207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  286 (401)
                      ...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++....+. .+
T Consensus       160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~  236 (388)
T d1w3ba_         160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH  236 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred             HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hH
Confidence            544432 3356677888889999999999999999988864 34567888999999999999999999999888643 36


Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG  366 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  366 (401)
                      ...+..+...+.+.|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.++...... +.+...+..+...
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  314 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence            7788889999999999999999999998863 3356788999999999999999999999988764 6678889999999


Q ss_pred             HHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765          367 LASISKVAEANELIGLMKKRFPKSGDMWNA  396 (401)
Q Consensus       367 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  396 (401)
                      +.+.|++++|++.+++..+..|.+...|..
T Consensus       315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  344 (388)
T d1w3ba_         315 KREQGNIEEAVRLYRKALEVFPEFAAAHSN  344 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999888776654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.2e-14  Score=119.96  Aligned_cols=270  Identities=9%  Similarity=-0.041  Sum_probs=162.2

Q ss_pred             HHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015765           80 IAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILS  159 (401)
Q Consensus        80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  159 (401)
                      .....+.+.|++++|+..|+++....  |.+...+..+..+|...|++++|...|++..+.. +-+...+..+...|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence            34455667777777777777766332  3345566666777777777777777777766654 34566666666777777


Q ss_pred             CCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 015765          160 KNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV  239 (401)
Q Consensus       160 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  239 (401)
                      |++++|.+.+++....   .|+.............                   ..+.......+..+...+.+.++...
T Consensus       101 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_         101 SLQRQACEILRDWLRY---TPAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             TCHHHHHHHHHHHHHT---STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHh---ccchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence            7777777777666532   2322111000000000                   00000011111223344556667777


Q ss_pred             HHHHHHcCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015765          240 LQMMEKCGI-ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC  318 (401)
Q Consensus       240 ~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  318 (401)
                      +.+..+... ..+..++..+...+...|++++|...|++...... -+...|..+..+|...|++++|.+.|++.++.. 
T Consensus       159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-  236 (323)
T d1fcha_         159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-  236 (323)
T ss_dssp             HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence            776655432 22445677777788888888888888888776532 256778888888888888888888888887642 


Q ss_pred             CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHHHccCCHHHH
Q 015765          319 EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG----------WVPHFSTMKSLVTGLASISKVAEA  376 (401)
Q Consensus       319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a  376 (401)
                      +-+...+..+..+|.+.|++++|.+.|++.++..          .......+..+-.++...|+.+.+
T Consensus       237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            2345677888888888888888888888877631          111223445555555555555433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-14  Score=124.11  Aligned_cols=253  Identities=15%  Similarity=0.020  Sum_probs=184.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES  195 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (401)
                      .....+.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|...|++..+..  +-+...+..+...|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccccc
Confidence            45566778899999999999988875 5568888888889999999999999998887652  34566778888888899


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL  275 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  275 (401)
                      |++++|.+.+++.....  |+.............                   ..+.......+..+...+.+.++...|
T Consensus       101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence            99999999988887642  222111000000000                   000011111223334456677888888


Q ss_pred             HHHHHCC-CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 015765          276 DGMLSRG-IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV  354 (401)
Q Consensus       276 ~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  354 (401)
                      .+..+.. -..+...+..+...+...|++++|...+++..... +-+...|..+...|...|++++|.+.++++++.. +
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p  237 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P  237 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence            8876643 23457788888999999999999999999988753 3357788899999999999999999999998864 4


Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccc
Q 015765          355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMW  394 (401)
Q Consensus       355 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  394 (401)
                      -+...+..+..+|.+.|++++|++.|++.++..|.+...+
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            4678899999999999999999999999998766665443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.5e-10  Score=96.32  Aligned_cols=192  Identities=10%  Similarity=0.018  Sum_probs=138.0

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015765          197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD  276 (401)
Q Consensus       197 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  276 (401)
                      ..++|..+|++..+...+.+...|...+....+.|+++.|..+++.+.+........+|...+..+.+.|+++.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45677788888776544555666777777788888888888888888775433334467788888888888888888888


Q ss_pred             HHHHCCCCcCHHHHHHHHH-HHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC-CC
Q 015765          277 GMLSRGIKPNLDTYKHLIH-GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG-WV  354 (401)
Q Consensus       277 ~~~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~  354 (401)
                      +..+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...+..+...|++++|..+|++..... ..
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            88776433 3333333332 234567888888888888875 23456778888888888888888888888887763 23


Q ss_pred             CC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765          355 PH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPKS  390 (401)
Q Consensus       355 ~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  390 (401)
                      |.  ...|...+..-...|+.+.+.++.+++.+.+|.+
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            32  3467777777778888888888888888877655

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=5.4e-10  Score=95.88  Aligned_cols=276  Identities=7%  Similarity=-0.055  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhhhC-CCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HH
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELKTR-PDLRQN--ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL-RQS----VD  147 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~  147 (401)
                      .........+...|++++|++++++.... |...+.  ...+..+...|...|++++|...|++..+... .++    ..
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            34444556667788888888888876632 221110  22455566677778888888888877654211 111    23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCH
Q 015765          148 ALNALLLGCILSKNYEEVKRIFTEFPKVY---GIEPN---SETYNKVIKSFCESGDSSSVYSILAEMRRKS----IRPNA  217 (401)
Q Consensus       148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~  217 (401)
                      .+..+...+...|++..+...+.......   +....   ...+..+...+...|+++.+...+.......    .....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            34455566777777777777777654321   11111   1234455566777777777777777765432    11223


Q ss_pred             HhHHHHHHHHHccCChHHHHHHHHHHHHcC--CCC----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---cCHH
Q 015765          218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCG--IAS----GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK---PNLD  288 (401)
Q Consensus       218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~  288 (401)
                      ..+......+...++...+...+.......  ...    ....+......+...|++++|...++........   ....
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            344455566666777777776666553321  111    1123444555666677777777777665544221   1234


Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          289 TYKHLIHGFGKEGNLEGAKKLFASMTN----GGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       289 ~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      .+..+...+...|++++|.+.++....    .+..|+ ...+..+...|...|++++|.+.+++..+.
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455566677777777777777776652    233332 345566666777777777777777766654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-09  Score=92.37  Aligned_cols=198  Identities=9%  Similarity=-0.008  Sum_probs=121.6

Q ss_pred             HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           75 RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN-MIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      ...|+.+...+.+.+.+++|+++++++....  |.+...|+....++...| ++++|+..++...+.. +-+..+|+.+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            4466666666777777777777777777432  344556666666666655 4777777777776665 45677777777


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC-
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK-  232 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-  232 (401)
                      ..+.+.|++++|++.++++.+..  +.+...|..+...+.+.|++++|++.++++.+.. +-+...|+.+...+.+.+. 
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcccc
Confidence            77777777777777777776543  4456677777777777777777777777776653 3355566655555544443 


Q ss_pred             -----hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765          233 -----YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       233 -----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  280 (401)
                           +++|+..+....+.. +.+...|+.+...+.. ...+++...++...+
T Consensus       197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence                 345555555555543 2244444444433322 233444455544443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=4.1e-09  Score=90.24  Aligned_cols=270  Identities=11%  Similarity=0.004  Sum_probs=183.6

Q ss_pred             HHHHhcCCChhHHHHHhhhccCC-CCCCc--cHhHHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCchhHHHHHH
Q 015765           46 IARLKSESNPFRILDICCGASLA-PESPL--DRMAFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQNERFHVHSI  118 (401)
Q Consensus        46 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li  118 (401)
                      ..++...|++++|+++++.+... |+..+  ....+..+..++...|++++|+..+++...    .+..+.....+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            35567888999999999877533 22211  124677778888899999999999988762    232222234455666


Q ss_pred             HHHHhcCChHHHHHHHHHHhh----CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcC---CCCCHHhHHHH
Q 015765          119 VLYGQANMIDHAMQTFEEMDK----YGLRQS---VDALNALLLGCILSKNYEEVKRIFTEFPKVYG---IEPNSETYNKV  188 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l  188 (401)
                      ..+...|++..+...+.....    .+....   ...+..+...+...|+++.+...+....+...   .......+...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            778888999999998887654    111111   23455667788889999999998888755321   11223445566


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCC--CCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---chhHHHHH
Q 015765          189 IKSFCESGDSSSVYSILAEMRRKS--IRPN----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG---VNVYNIRI  259 (401)
Q Consensus       189 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll  259 (401)
                      ...+...++...+...+.+.....  ....    ...+......+...|++++|...++...+.....+   ...+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            677788889998888887764421  1111    12345566677888999999998888765432222   23455677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH----CCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765          260 QSLCKLKRSEEAKALLDGMLS----RGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                      .++...|++++|...+++...    .+..|+ ..++..+...|...|++++|.+.+++..+
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888889999999999988763    233443 35677788888999999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=1.7e-11  Score=104.97  Aligned_cols=223  Identities=8%  Similarity=-0.078  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHccCChHHHHH
Q 015765          162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG--DSSSVYSILAEMRRKSIRPNATDFG-LLLAGFYKEHKYEDVGK  238 (401)
Q Consensus       162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~  238 (401)
                      +++|+..++...+..  +.+...|..+..++...+  ++++|...++++.... +.+...+. .....+...+.+++|+.
T Consensus        89 ~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          89 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence            444555555544331  223334444444443333  2445555555554432 22233322 22234444455555555


Q ss_pred             HHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015765          239 VLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC  318 (401)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  318 (401)
                      .++.+.+.+ +.+...|+.+..++.+.|++++|...+....+.  .|+.   ......+...+..+++...+....... 
T Consensus       166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-  238 (334)
T d1dcea1         166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-  238 (334)
T ss_dssp             HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence            555554443 223444555555555555554443333222221  0110   111122223344445555555544432 


Q ss_pred             CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765          319 EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      +++...+..+...+...|+.++|...+.+..+.. +.+...+..+..+|...|++++|.+.+++..+..|.+..-|+
T Consensus       239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~  314 (334)
T d1dcea1         239 AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  314 (334)
T ss_dssp             CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence            2233344444455555556666666665555443 223444555555666666666666666666665555444444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-09  Score=92.38  Aligned_cols=195  Identities=9%  Similarity=-0.014  Sum_probs=97.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765          114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF  192 (401)
Q Consensus       114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  192 (401)
                      ++.+...+.+.+.+++|+++++++++.+ +-+..+|+....++...| ++++|+..++...+..  +-+..+|+.+...+
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHhHHH
Confidence            3344444455555566666666555554 334455555555555443 3555555555554432  33344555555555


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC-----
Q 015765          193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR-----  267 (401)
Q Consensus       193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----  267 (401)
                      .+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|++.++++.+.+ +.+...|+.+...+.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence            55566666666665555542 3345555555555555566666666655555543 2234445444444444333     


Q ss_pred             -HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765          268 -SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       268 -~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                       +++|...+....+... -+...|+-+...+.. ...+++.+.++...+
T Consensus       201 ~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence             3455555555544421 134444444433332 233445555544443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=2.3e-09  Score=90.25  Aligned_cols=188  Identities=12%  Similarity=0.036  Sum_probs=133.8

Q ss_pred             CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 015765          161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL  240 (401)
Q Consensus       161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  240 (401)
                      ..++|..+|++..+. ..+.+...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus        79 ~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          79 FSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            356777788777543 2234455677777777888888888888888876533333456778888888888888888888


Q ss_pred             HHHHHcCCCCCchhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC-C
Q 015765          241 QMMEKCGIASGVNVYNIRIQS-LCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG-C  318 (401)
Q Consensus       241 ~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~  318 (401)
                      +.+.+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++..+.. .
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            8887764 3334444443333 334578888888888888762 3357788888888888899999999998887653 3


Q ss_pred             CCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765          319 EPD--SYCFFMFTYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       319 ~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      .|.  ...|...+..-...|+.+.+.++.+++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            333  346777777777889999988888887664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.3e-10  Score=92.90  Aligned_cols=118  Identities=8%  Similarity=-0.057  Sum_probs=66.8

Q ss_pred             ChHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015765          126 MIDHAMQTFEEMDKYGLRQ---SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY  202 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  202 (401)
                      +.+.++.-+++........   ...+|..+..+|.+.|++++|++.|++..+..  +-+..+|+.+..+|.+.|++++|+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhh
Confidence            3445555555555432111   12345555566666666666666666665442  334455666666666666666666


Q ss_pred             HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                      +.|++..+.. +-+..++..+..++...|++++|...++...+.
T Consensus        92 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_          92 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            6666665542 223445555666666666666666666666554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=6.3e-09  Score=85.04  Aligned_cols=216  Identities=14%  Similarity=0.046  Sum_probs=122.1

Q ss_pred             hHHHHHHHHhhhCCCCC--CchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015765           92 NAISQLLEELKTRPDLR--QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIF  169 (401)
Q Consensus        92 ~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  169 (401)
                      +.++.-++++.......  ....++..+..+|.+.|++++|+..|++.++.. +.+..+|+.+..++.+.|++++|++.|
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            34445555555332221  123456666777888888888888888887765 556778888888888888888888888


Q ss_pred             HhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 015765          170 TEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA  249 (401)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  249 (401)
                      ++..+..  +-+..++..+..++...|++++|.+.|++..+.. +.+......+..++.+.+..+....+........  
T Consensus        95 ~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  169 (259)
T d1xnfa_          95 DSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--  169 (259)
T ss_dssp             HHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--
T ss_pred             hHHHHHH--hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--
Confidence            8887652  3345567777788888888888888888877653 2344443334444445554444444444444432  


Q ss_pred             CCchhHHHHHHHHHhcCCHH----HHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          250 SGVNVYNIRIQSLCKLKRSE----EAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       250 ~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                      ++...++ ++..+.......    .+...+......  .|+ ..+|..+...|...|++++|.+.|+..+..
T Consensus       170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            1221122 222222111111    111111111100  111 234555666666677777777777766653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=9.7e-10  Score=93.82  Aligned_cols=254  Identities=8%  Similarity=-0.062  Sum_probs=132.2

Q ss_pred             HHhcCCChhHHHHHhhhccC-CCCCCccHhHHHHHHHH---HHh-------CCCchHHHHHHHHhhhCCCCCCchhHHHH
Q 015765           48 RLKSESNPFRILDICCGASL-APESPLDRMAFSIAVSK---LSQ-------ANHFNAISQLLEELKTRPDLRQNERFHVH  116 (401)
Q Consensus        48 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~---~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  116 (401)
                      .....+..++|++++..+.. .|+   +...|+..-..   +..       .|++++|+.+++......  |.+...+..
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~  112 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHH  112 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence            33444455677777766542 222   33334332222   222       233566666666665221  223445555


Q ss_pred             HHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765          117 SIVLYGQAN--MIDHAMQTFEEMDKYGLRQSVDALNA-LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC  193 (401)
Q Consensus       117 li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (401)
                      +..++...+  ++++|...++.+.+.. +++...+.. ....+...+.+++|+..++...+..  +-+...|+.+...+.
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~  189 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLP  189 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHH
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            555554443  3667777777766654 334444433 3345555667777777777666442  344556666666677


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 015765          194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA  273 (401)
Q Consensus       194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  273 (401)
                      +.|++++|...+....+.  .|+   .......+...+..+++...+....... +++...+..+...+...|+.++|..
T Consensus       190 ~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~  263 (334)
T d1dcea1         190 QLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCK  263 (334)
T ss_dssp             HHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHH
Confidence            777666655444332221  011   1112223344455555555555555443 2334444555555556666666666


Q ss_pred             HHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765          274 LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       274 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  316 (401)
                      .+.+...... -+..++..+..++...|+.++|.+.+++..+.
T Consensus       264 ~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         264 ELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            6666555421 13455555666666666666666666666653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=2.4e-07  Score=76.80  Aligned_cols=61  Identities=8%  Similarity=0.008  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 015765           78 FSIAVSKLSQANHFNAISQLLEELKT----RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMD  138 (401)
Q Consensus        78 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~  138 (401)
                      |......|...|++++|.+.|++...    .++.+.-..+|..+..+|.+.|++++|.+.+++..
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~  104 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence            44445556666666666666665541    11111123345555555656666666665555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.8e-07  Score=68.53  Aligned_cols=120  Identities=13%  Similarity=0.022  Sum_probs=59.3

Q ss_pred             HHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 015765          156 CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED  235 (401)
Q Consensus       156 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  235 (401)
                      +...|+++.|++.|.++.     +|+..+|..+..+|...|++++|++.|++..+.. +-+...|..+..++.+.|++++
T Consensus        15 ~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            344455555555554442     3444445555555555555555555555554432 2234445555555555555555


Q ss_pred             HHHHHHHHHHcCCC--------------C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765          236 VGKVLQMMEKCGIA--------------S-GVNVYNIRIQSLCKLKRSEEAKALLDGMLSR  281 (401)
Q Consensus       236 a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  281 (401)
                      |.+.|++.......              . ...++..+..++.+.|++++|.+.+......
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            55555544332100              0 0123344555666666666666666666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=5.5e-07  Score=69.39  Aligned_cols=123  Identities=10%  Similarity=0.031  Sum_probs=62.2

Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS  200 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (401)
                      +...|+++.|++.|.++.    +++..+|..+..+|...|++++|++.|++..+..  +.+...|..+..+|.+.|++++
T Consensus        15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHHH
Confidence            334455555555554432    3444445555555555555555555555554432  2334445555555555555555


Q ss_pred             HHHHHHHHHhCC------------C--CC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 015765          201 VYSILAEMRRKS------------I--RP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA  249 (401)
Q Consensus       201 a~~~~~~~~~~~------------~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  249 (401)
                      |.+.|++.....            .  .+ ...++..+..++.+.|++++|.+.++...+....
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            555555543310            0  00 0233445566677777777777777776665433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.5e-07  Score=66.19  Aligned_cols=100  Identities=10%  Similarity=0.024  Sum_probs=67.5

Q ss_pred             HHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 015765          294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV  373 (401)
Q Consensus       294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  373 (401)
                      ...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..+.+.++.+ +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            344566677777777777776543 3345566777777777777777777777777664 45666777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCcccch
Q 015765          374 AEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       374 ~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      ++|+..+++..+..|.+...+.
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~  109 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKE  109 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Confidence            7777777777777666655443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=8e-07  Score=73.54  Aligned_cols=128  Identities=8%  Similarity=-0.007  Sum_probs=61.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHH
Q 015765          118 IVLYGQANMIDHAMQTFEEMDKY----GLRQ-SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKV  188 (401)
Q Consensus       118 i~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l  188 (401)
                      ...|...|++++|.+.|.+..+.    +-++ -..+|..+..+|.+.|++++|.+.+++..+...-..+    ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            45566677777777777766542    1011 1245566666666677777666666655432110111    1233334


Q ss_pred             HHHHHh-cCChhHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765          189 IKSFCE-SGDSSSVYSILAEMRRK----SIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEK  245 (401)
Q Consensus       189 ~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  245 (401)
                      ...|.. .|++++|.+.|++..+.    +..+ -..++..+...+...|++++|...++++..
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            444432 35566665555554321    1000 012344444555555555555555555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.2e-07  Score=73.88  Aligned_cols=99  Identities=12%  Similarity=0.010  Sum_probs=76.6

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC-CHhhHHHH
Q 015765          250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP-DSYCFFMF  328 (401)
Q Consensus       250 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l  328 (401)
                      |+...+......+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|+..|+..++.  .| +...|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence            4555666677788888888888888888777642 36777888888888888888888888888764  34 46678888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHC
Q 015765          329 TYFLCQGGEYETALKVCRASMAK  351 (401)
Q Consensus       329 i~~~~~~g~~~~a~~~~~~~~~~  351 (401)
                      ..+|...|++++|...|+++.+.
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh
Confidence            88888888888888888877654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.64  E-value=6.2e-05  Score=60.82  Aligned_cols=221  Identities=10%  Similarity=-0.026  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHHH
Q 015765          113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNKV  188 (401)
Q Consensus       113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  188 (401)
                      .+..+...+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...|...+....+.    -+......+
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----~~~~a~~~l   76 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----cccchhhcc
Confidence            34444455555666666666666665544   34444444444443    34556666655555321    122333333


Q ss_pred             HHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 015765          189 IKSFCE----SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFY----KEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQ  260 (401)
Q Consensus       189 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  260 (401)
                      ...+..    ..+.+.|...++...+.|.   ......+...+.    .......+...+......+   +...+..+..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~  150 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  150 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhh
Confidence            333322    2345556666665555442   111122221111    1223444444444444432   3334444444


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765          261 SLCK----LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL  332 (401)
Q Consensus       261 ~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  332 (401)
                      .+..    ..+...+...++...+.|   +......+...|..    ..++++|..+|....+.|   +...+..|...|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y  224 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  224 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence            4443    234455555555555543   33344334333332    345666666666665544   233344444444


Q ss_pred             Hc----cCCHHHHHHHHHHHHHCC
Q 015765          333 CQ----GGEYETALKVCRASMAKG  352 (401)
Q Consensus       333 ~~----~g~~~~a~~~~~~~~~~~  352 (401)
                      ..    ..+.++|.++|++..+.|
T Consensus       225 ~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         225 YNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HcCCCCccCHHHHHHHHHHHHHCc
Confidence            33    224555666666555554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=5.6e-07  Score=67.11  Aligned_cols=123  Identities=9%  Similarity=-0.077  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 015765          255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ  334 (401)
Q Consensus       255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  334 (401)
                      +......|.+.|++++|...|++..+... -+...|..+..+|...|++++|.+.|++.++.. +-+...|..+..++..
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence            44556678899999999999999998753 368889999999999999999999999999864 3456789999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHHHHHHHH
Q 015765          335 GGEYETALKVCRASMAKGWVPHFSTMKSLVTGL--ASISKVAEANELI  380 (401)
Q Consensus       335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~  380 (401)
                      .|++++|...+++..... +-+...+..+..+.  ...+.+++|....
T Consensus        91 ~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999998875 33455555544332  3345566666543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2e-06  Score=60.12  Aligned_cols=88  Identities=10%  Similarity=-0.023  Sum_probs=43.1

Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765          120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS  199 (401)
Q Consensus       120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  199 (401)
                      .+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..++...+..  +.+...|..+..++...|+++
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccCHH
Confidence            3444455555555555554443 3344445555555555555555555555554332  333444455555555555555


Q ss_pred             HHHHHHHHHHh
Q 015765          200 SVYSILAEMRR  210 (401)
Q Consensus       200 ~a~~~~~~~~~  210 (401)
                      +|+..|++..+
T Consensus        89 ~A~~~~~~a~~   99 (117)
T d1elwa_          89 EAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2e-06  Score=63.91  Aligned_cols=88  Identities=6%  Similarity=0.049  Sum_probs=42.1

Q ss_pred             HHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 015765           83 SKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY  162 (401)
Q Consensus        83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  162 (401)
                      ..+.+.|++++|+..|++.....  |.+...|..+..+|...|++++|...|+..++.. +.+..+|..+..++...|++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            34445555555555555544221  2233444455555555555555555555554443 33444455555555555555


Q ss_pred             HHHHHHHHhch
Q 015765          163 EEVKRIFTEFP  173 (401)
Q Consensus       163 ~~a~~~~~~~~  173 (401)
                      ++|...+++..
T Consensus        95 ~eA~~~~~~a~  105 (159)
T d1a17a_          95 RAALRDYETVV  105 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.5e-07  Score=64.46  Aligned_cols=93  Identities=14%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 015765          258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN---LEGAKKLFASMTNGGCEPD-SYCFFMFTYFLC  333 (401)
Q Consensus       258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~  333 (401)
                      ++..+...+++++|.+.|++....+. .+..++..+..++.+.++   +++|+.+++++...+..|+ ..++..+..+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            44444445555555555555554431 234444444444443332   2335555555444321121 123444445555


Q ss_pred             ccCCHHHHHHHHHHHHHC
Q 015765          334 QGGEYETALKVCRASMAK  351 (401)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~  351 (401)
                      +.|++++|.+.|+++++.
T Consensus        84 ~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHh
Confidence            555555555555555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=2.9e-06  Score=65.69  Aligned_cols=53  Identities=6%  Similarity=-0.177  Sum_probs=21.2

Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015765          119 VLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF  172 (401)
Q Consensus       119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  172 (401)
                      ..|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++.
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a   64 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRA   64 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHH
Confidence            33334444444444444433332 223333444444444444444444444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.38  E-value=2.5e-06  Score=59.12  Aligned_cols=84  Identities=10%  Similarity=-0.001  Sum_probs=36.0

Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS  200 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (401)
                      +.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|+..|++..+..  +.+..+|..+...|...|++++
T Consensus        26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCCHHH
Confidence            334444444444444444433 2234444444444444444444444444443321  2223344444444444444444


Q ss_pred             HHHHHHH
Q 015765          201 VYSILAE  207 (401)
Q Consensus       201 a~~~~~~  207 (401)
                      |.+.+++
T Consensus       103 A~~~l~~  109 (112)
T d1hxia_         103 ALASLRA  109 (112)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.37  E-value=0.00033  Score=56.30  Aligned_cols=225  Identities=11%  Similarity=-0.023  Sum_probs=161.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhH
Q 015765          145 SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----SGDSSSVYSILAEMRRKSIRPNATDF  220 (401)
Q Consensus       145 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  220 (401)
                      |+..+..|...+...+++++|++.|++..+.    -+...+..|...|..    ..+...|...+......+   +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            4566777888888999999999999999543    366677777777776    568899999999988776   33444


Q ss_pred             HHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 015765          221 GLLLAGFY----KEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDTYKH  292 (401)
Q Consensus       221 ~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~  292 (401)
                      ..+...+.    ...+.+.+...++...+.|..   .....+...+..    ......+...+......+   +...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhh
Confidence            44444433    356788899999988887632   222333333332    456777888887776653   6677777


Q ss_pred             HHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015765          293 LIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ----GGEYETALKVCRASMAKGWVPHFSTMKSLV  364 (401)
Q Consensus       293 li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  364 (401)
                      |...|..    ..+...+..+++...+.|   +......+...|..    ..+.++|..+|++..+.|   ++..+..|.
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG  221 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  221 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence            7777764    457778888888888754   45555556555554    568999999999999887   466777778


Q ss_pred             HHHHc----cCCHHHHHHHHHHHHhcCC
Q 015765          365 TGLAS----ISKVAEANELIGLMKKRFP  388 (401)
Q Consensus       365 ~~~~~----~g~~~~a~~~~~~~~~~~~  388 (401)
                      ..|.+    ..+.++|.+.|++..+...
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            87765    4489999999999877643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.33  E-value=2.8e-06  Score=58.85  Aligned_cols=88  Identities=9%  Similarity=-0.025  Sum_probs=49.5

Q ss_pred             HHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 015765          294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV  373 (401)
Q Consensus       294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  373 (401)
                      ...+.+.|++++|...|++.++.. +-+...|..+..++.+.|++++|+..+++.++.. +.+...+..+...|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            344455566666666666655542 1234555555566666666666666666655543 33455556666666666666


Q ss_pred             HHHHHHHHHH
Q 015765          374 AEANELIGLM  383 (401)
Q Consensus       374 ~~a~~~~~~~  383 (401)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.31  E-value=0.00028  Score=58.43  Aligned_cols=271  Identities=10%  Similarity=0.057  Sum_probs=154.8

Q ss_pred             cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765           74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL  153 (401)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  153 (401)
                      +..-...+.+.|.+.|.++.|..+|..+.          -+..++..+.+.+++..|.+++.+.      .+..+|..+.
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             ----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            33445566788889999999999998754          2677888888899999988887654      2567888888


Q ss_pred             HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765          154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY  233 (401)
Q Consensus       154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  233 (401)
                      ..+.+......+..+  ..    ....+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .
T Consensus        77 ~~l~~~~e~~la~i~--~~----~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          77 FACVDGKEFRLAQMC--GL----HIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHTTCHHHHHHT--TT----TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHhCcHHHHHHHH--HH----HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence            888887776554221  11    22345555667888888999999999999887643 2456777888888888764 3


Q ss_pred             HHHHHHHHHHHHcCCCC--------CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH
Q 015765          234 EDVGKVLQMMEKCGIAS--------GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG  305 (401)
Q Consensus       234 ~~a~~~~~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  305 (401)
                      ++..+.++..... +.+        ....|.-++..|.+.|+++.|..++   .+.  .++..-....+..+.+.++.+.
T Consensus       149 ~kl~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~  222 (336)
T d1b89a_         149 QKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVEL  222 (336)
T ss_dssp             HHHHHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHH
T ss_pred             HHHHHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHH
Confidence            3433333332110 110        1122344555555555555554432   221  1222223444556666777776


Q ss_pred             HHHHHHHHHhCCCCCCHhhHHHHHHHH-------------HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015765          306 AKKLFASMTNGGCEPDSYCFFMFTYFL-------------CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK  372 (401)
Q Consensus       306 a~~~~~~m~~~~~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  372 (401)
                      ..++.....+.  .|  ...+.++...             .+.+++.....+++.....|   +..+.+++...|...++
T Consensus       223 ~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d  295 (336)
T d1b89a_         223 YYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED  295 (336)
T ss_dssp             HHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcch
Confidence            66666655542  23  2334444444             44444444555555444433   45788999999999999


Q ss_pred             HHHHHHHHH
Q 015765          373 VAEANELIG  381 (401)
Q Consensus       373 ~~~a~~~~~  381 (401)
                      ++.-.+.++
T Consensus       296 ~~~l~~~i~  304 (336)
T d1b89a_         296 YQALRTSID  304 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            766554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.2e-06  Score=61.54  Aligned_cols=117  Identities=10%  Similarity=-0.076  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----Cc---------CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCC
Q 015765          254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGI-----KP---------NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCE  319 (401)
Q Consensus       254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~p---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  319 (401)
                      .+......+.+.|++++|...|.+..+.-.     ..         -..+|+.+..+|.+.|++++|+..++..++.. +
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p   93 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S   93 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence            445556678889999999999998876421     11         02345667777888889999998888888753 3


Q ss_pred             CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015765          320 PDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK  372 (401)
Q Consensus       320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  372 (401)
                      .+...|..+..+|...|++++|...|+++.+.. +-+..+...+..+..+.+.
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence            367788888888888899999999988888764 3355555555555444333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4.7e-06  Score=58.48  Aligned_cols=94  Identities=17%  Similarity=0.117  Sum_probs=55.6

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 015765          222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR---SEEAKALLDGMLSRGIKPN-LDTYKHLIHGF  297 (401)
Q Consensus       222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~  297 (401)
                      .+++.+...+++++|++.|+.....+ +.+..++..+..++.+.++   +++|+.+|+++...+..|+ ..+|..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45555666666666666666666654 3355566666666655433   3346666666665543333 23555666666


Q ss_pred             hcCCChHHHHHHHHHHHhC
Q 015765          298 GKEGNLEGAKKLFASMTNG  316 (401)
Q Consensus       298 ~~~~~~~~a~~~~~~m~~~  316 (401)
                      .+.|++++|.+.|+++++.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            6777777777777766663

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.23  E-value=1.6e-05  Score=58.44  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765          323 YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      .+|..+..+|.+.|++++|++.++++++.+ +.+...|..+..++...|++++|+..|++..+..|.|...++
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~  139 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN  139 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            356667777888888888888888887765 557788888888888888888888888888888877766544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.5e-05  Score=55.73  Aligned_cols=61  Identities=7%  Similarity=-0.085  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                      |+.+..+|.+.|++++|+..++..+... +.+...+..+..++...|++++|...|+...+.
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            4445555556666666666666555542 234555555555666666666666666665554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.5e-05  Score=53.08  Aligned_cols=94  Identities=6%  Similarity=0.076  Sum_probs=53.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-----HHhHHHHHH
Q 015765          116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-----SETYNKVIK  190 (401)
Q Consensus       116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~  190 (401)
                      .+...|.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..+++.++...-.+.     ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666654 445666666666666666666666666665432100111     123444555


Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 015765          191 SFCESGDSSSVYSILAEMRR  210 (401)
Q Consensus       191 ~~~~~~~~~~a~~~~~~~~~  210 (401)
                      .+...+++++|++.|++...
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            55556666666666665544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=7.7e-05  Score=56.08  Aligned_cols=71  Identities=14%  Similarity=0.062  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHh
Q 015765          147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR-----KSIRPNATD  219 (401)
Q Consensus       147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  219 (401)
                      ..+..+...+.+.|++++|+..++++.+..  +-+...|..++.+|.+.|+..+|++.|+++.+     .|+.|+..+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            344555566666666666666666665543  44555566666666666666666666665422     356665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.98  E-value=3.4e-05  Score=57.65  Aligned_cols=66  Identities=8%  Similarity=0.111  Sum_probs=32.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765          325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG  391 (401)
Q Consensus       325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  391 (401)
                      |..+..++.+.|++++|+..+.++++.. +.++..|..+..+|.+.|++++|++.|++..+..|.+.
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~  145 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            3334444445555555555555554443 33444455555555555555555555555555444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.3e-06  Score=75.39  Aligned_cols=225  Identities=9%  Similarity=-0.039  Sum_probs=120.1

Q ss_pred             HHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 015765           93 AISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV-DALNALLLGCILSKNYEEVKRIFT  170 (401)
Q Consensus        93 ~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~  170 (401)
                      +|.+.|++... .++...   .+..+..++...|++++|   |++++..+  |+. ..++...... + ..+..+.+.++
T Consensus         4 eA~q~~~qA~~l~p~~a~---a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTD---SKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTC---SSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHH---HHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHH
Confidence            57788887763 333333   556677778888888776   66666442  221 1222111111 1 12345566666


Q ss_pred             hchhhcCCCCCHHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 015765          171 EFPKVYGIEPNSETYNKVIKS--FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI  248 (401)
Q Consensus       171 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  248 (401)
                      ...+. ...++..-....+..  ....+.++.++..+....+.. +++...+..+...+.+.|+.++|...++...... 
T Consensus        74 ~~~k~-~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-  150 (497)
T d1ya0a1          74 GQAKN-RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-  150 (497)
T ss_dssp             HHHSC-SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH-
T ss_pred             Hhccc-ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence            65432 112232222222222  222345555555554443321 3345667777888888999999988877665532 


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 015765          249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMF  328 (401)
Q Consensus       249 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  328 (401)
                        ...++..+...+...|++++|...|++..+... -+...|+.+...+...|+..+|...|.+.+... .|-...+..|
T Consensus       151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL  226 (497)
T d1ya0a1         151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL  226 (497)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence              135677788889999999999999999988742 256889999999999999999999999998765 5667778887


Q ss_pred             HHHHHc
Q 015765          329 TYFLCQ  334 (401)
Q Consensus       329 i~~~~~  334 (401)
                      ...+.+
T Consensus       227 ~~~~~~  232 (497)
T d1ya0a1         227 QKALSK  232 (497)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.98  E-value=0.0029  Score=52.13  Aligned_cols=269  Identities=12%  Similarity=0.041  Sum_probs=158.8

Q ss_pred             HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015765           42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY  121 (401)
Q Consensus        42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  121 (401)
                      ...+.+.+...|.++.|..++....          -|..++..+.+.++++.|.+++.+..       +..+|..+...+
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~~~l   79 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFAC   79 (336)
T ss_dssp             ------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHHHHH
Confidence            4455677888888999988887541          37778888899999999988887642       245777888888


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHH
Q 015765          122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSV  201 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  201 (401)
                      .+......+     .+.......+......++..|-..|.+++...+++.....  -..+...++-++..|++.+ .++.
T Consensus        80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~-~~kl  151 (336)
T d1b89a_          80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK-PQKM  151 (336)
T ss_dssp             HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC-HHHH
T ss_pred             HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC-hHHH
Confidence            877766543     2223333456666778888999999999999999876532  1556667888888888754 3444


Q ss_pred             HHHHHHHHhCCCCCC--------HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 015765          202 YSILAEMRRKSIRPN--------ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA  273 (401)
Q Consensus       202 ~~~~~~~~~~~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  273 (401)
                      .+.+...-.. ..+.        ...|.-++-.|.+.|+++.|..++   .+.  .++..-....+..+.+..+.+...+
T Consensus       152 ~e~l~~~s~~-y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~  225 (336)
T d1b89a_         152 REHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYR  225 (336)
T ss_dssp             HHHHHHHSTT-SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred             HHHHHhcccc-CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHH
Confidence            4444332111 1111        112344455555555555554332   121  2233334455666666667666666


Q ss_pred             HHHHHHHCCCCcCHH-----------HHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765          274 LLDGMLSRGIKPNLD-----------TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL  342 (401)
Q Consensus       274 ~~~~~~~~~~~p~~~-----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~  342 (401)
                      +.....+.  +|+..           .-..++..+.+.++......+++...+.|   +....+++...|...++++.-.
T Consensus       226 ~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~  300 (336)
T d1b89a_         226 AIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALR  300 (336)
T ss_dssp             HHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHH
Confidence            66655443  23211           01334555566667777777776665544   4568899999999999976655


Q ss_pred             HHHH
Q 015765          343 KVCR  346 (401)
Q Consensus       343 ~~~~  346 (401)
                      +..+
T Consensus       301 ~~i~  304 (336)
T d1b89a_         301 TSID  304 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.93  E-value=7.8e-06  Score=65.92  Aligned_cols=130  Identities=11%  Similarity=-0.002  Sum_probs=76.4

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHH
Q 015765          263 CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS-YCFFMFTYFLCQGGEYETA  341 (401)
Q Consensus       263 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a  341 (401)
                      .+.|++++|+..+++..+.... |...+..+...++..|++++|.+.++...+.  .|+. ..+..+...+...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence            3557777777777777776432 6677777777777777777777777777764  3443 3333333333322222222


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765          342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      ..-.......+-+++...+......+...|+.++|.+.++++.+..|.....|+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            211111011111222333444556677788999999998888888777766665

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.91  E-value=0.00029  Score=51.34  Aligned_cols=62  Identities=13%  Similarity=-0.054  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015765          148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK  211 (401)
Q Consensus       148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  211 (401)
                      +|..+..+|.+.|++++|++.+++..+..  +.+..+|..+..++...|++++|...|++..+.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44445555555666666666665555432  334455555556666666666666666555543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.91  E-value=0.00012  Score=54.40  Aligned_cols=132  Identities=8%  Similarity=-0.051  Sum_probs=90.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCH-----------HHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015765          253 NVYNIRIQSLCKLKRSEEAKALLDGMLSR---GIKPNL-----------DTYKHLIHGFGKEGNLEGAKKLFASMTNGGC  318 (401)
Q Consensus       253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~~-----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  318 (401)
                      ..+.-....+.+.|++++|...|++....   ....+.           ..|+.+..+|.+.|++++|+..++..++.. 
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-   94 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-   94 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence            45566677888999999999999886642   122111           234556677888999999999998888754 


Q ss_pred             CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhc
Q 015765          319 EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV-AEANELIGLMKKR  386 (401)
Q Consensus       319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~  386 (401)
                      +.+...|..+..++...|++++|...|+++.+.. +.+......+-....+.+.. +...+++..|-++
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            4567788888888999999999999999888764 34555555555544444433 3344555555444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.90  E-value=0.00045  Score=51.20  Aligned_cols=61  Identities=3%  Similarity=-0.026  Sum_probs=31.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765          185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC  246 (401)
Q Consensus       185 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  246 (401)
                      |..+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|...|+.+.+.
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3334445555555555555555554432 334445555555555555555555555555543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=9e-05  Score=52.30  Aligned_cols=56  Identities=9%  Similarity=0.128  Sum_probs=24.1

Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765          223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML  279 (401)
Q Consensus       223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  279 (401)
                      +...+.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|++++|...++++.
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            3344444444444444444444432 2233344444444444444444444444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.86  E-value=0.00016  Score=53.88  Aligned_cols=79  Identities=11%  Similarity=-0.029  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015765          287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG  366 (401)
Q Consensus       287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  366 (401)
                      ...|..+..+|.+.|++++|+..++..++.. +.+...|..+..++...|++++|.+.|+++++.. +.+......+..+
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~  154 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4566777788888999999999999988764 3467788888899999999999999999888864 3355555555444


Q ss_pred             H
Q 015765          367 L  367 (401)
Q Consensus       367 ~  367 (401)
                      .
T Consensus       155 ~  155 (169)
T d1ihga1         155 K  155 (169)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.4e-06  Score=74.02  Aligned_cols=227  Identities=9%  Similarity=-0.008  Sum_probs=119.1

Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHH
Q 015765          129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE-TYNKVIKSFCESGDSSSVYSILAE  207 (401)
Q Consensus       129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~  207 (401)
                      +|.+.|++..+.. +.....+..+..++...|++++|   |+++...   .|+.. .++. ...+.+ ..+..+.+.++.
T Consensus         4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~-e~~Lw~-~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKV-EQDLWN-HAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTH-HHHHHH-HHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhH-HHHHHH-HHHHHHHHHHHH
Confidence            6778888877643 22344566667777777777765   5665533   33221 1111 111111 124566677776


Q ss_pred             HHhCCCCCCHHhHHHHHHHH--HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 015765          208 MRRKSIRPNATDFGLLLAGF--YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP  285 (401)
Q Consensus       208 ~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  285 (401)
                      ..+....++..-....+..+  ...+.++.++..++...+.. +++...+..+...+.+.|+.++|...+.......   
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---  150 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---  150 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence            66544333333222222222  22344445544444333332 2345566777777888888888888776655431   


Q ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015765          286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT  365 (401)
Q Consensus       286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  365 (401)
                      ...++..+...+...|++++|...|.+..+.. +-+...|+.+...+...|+..+|...|.+.+... +|-...+..|..
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~  228 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence            13566777888888899999999998888753 3345788888888888999999999998888765 567777888877


Q ss_pred             HHHcc
Q 015765          366 GLASI  370 (401)
Q Consensus       366 ~~~~~  370 (401)
                      .+.+.
T Consensus       229 ~~~~~  233 (497)
T d1ya0a1         229 ALSKA  233 (497)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=0.00069  Score=50.63  Aligned_cols=72  Identities=10%  Similarity=-0.096  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 015765          288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA-----KGWVPHFSTM  360 (401)
Q Consensus       288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~  360 (401)
                      ..+..+...+...|++++|...++.+++.. +-+...|..++.+|...|+.++|.+.|+++.+     .|+.|...+-
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            445566667777777777777777776643 33566677777777777777777777776533     3677766543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.69  E-value=3.4e-05  Score=62.02  Aligned_cols=50  Identities=8%  Similarity=0.106  Sum_probs=25.3

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765          123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP  173 (401)
Q Consensus       123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  173 (401)
                      +.|++++|+..+++.++.. +.+...+..+...++..|++++|.+.|+...
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~   57 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI   57 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3455555555555554443 3344555555555555555555555555554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00014  Score=48.13  Aligned_cols=69  Identities=9%  Similarity=-0.036  Sum_probs=36.0

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHCC-----CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765          327 MFTYFLCQGGEYETALKVCRASMAKG-----WVP-HFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN  395 (401)
Q Consensus       327 ~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  395 (401)
                      .+...+.+.|++++|...|++..+..     ..+ ...++..+..+|.+.|++++|+..++++++..|.+..+++
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            34445555555555555555544320     011 1344555666666666666666666666666655555444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.60  E-value=0.00023  Score=51.30  Aligned_cols=72  Identities=13%  Similarity=0.002  Sum_probs=40.2

Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015765          122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILS----------KNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS  191 (401)
Q Consensus       122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  191 (401)
                      -+.+.+++|++.|+...+.. +.+..++..+..++...          +.+++|+..|++..+..  +.+..+|..+..+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~   84 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHH
Confidence            34455677777777766665 45566666666555533          33455666666665432  3344555555555


Q ss_pred             HHhcC
Q 015765          192 FCESG  196 (401)
Q Consensus       192 ~~~~~  196 (401)
                      |...|
T Consensus        85 y~~~g   89 (145)
T d1zu2a1          85 YTSFA   89 (145)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            55443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.59  E-value=0.00021  Score=51.50  Aligned_cols=115  Identities=15%  Similarity=0.106  Sum_probs=73.5

Q ss_pred             HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh----------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015765           86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ----------ANMIDHAMQTFEEMDKYGLRQSVDALNALLLG  155 (401)
Q Consensus        86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  155 (401)
                      -+.+.+++|++.|+......  |.+...+..+..++..          .+.+++|+..|++.++.+ +.+..+|..+..+
T Consensus         8 ~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            44566888888888887332  4445667777666653          345688999999998876 5678888888888


Q ss_pred             HHhcCC-----------HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015765          156 CILSKN-----------YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS  212 (401)
Q Consensus       156 ~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  212 (401)
                      |...|.           +++|.+.|++..+.   .|+...+..-+..+      ..|.+++.+..+.|
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            876543           45666666666543   55555544433322      34555555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.002  Score=42.24  Aligned_cols=76  Identities=8%  Similarity=-0.106  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHhhhC-----CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015765           76 MAFSIAVSKLSQANHFNAISQLLEELKTR-----PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN  150 (401)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  150 (401)
                      ..+..+...+.+.|++++|++.|++....     ...+....++..+..+|.+.|++++|++.++++++.. +-+..+++
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~   84 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence            34445566667777777777777666511     1112224556666677777777777777777766654 33344444


Q ss_pred             HH
Q 015765          151 AL  152 (401)
Q Consensus       151 ~l  152 (401)
                      .+
T Consensus        85 Nl   86 (95)
T d1tjca_          85 NL   86 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.28  E-value=0.0011  Score=48.33  Aligned_cols=90  Identities=14%  Similarity=0.097  Sum_probs=49.2

Q ss_pred             HhcCCChHHHHHHHHHHHhCC-CCCC----------HhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCC----
Q 015765          297 FGKEGNLEGAKKLFASMTNGG-CEPD----------SYCFFMFTYFLCQGGEYETALKVCRASMAK-----GWVPH----  356 (401)
Q Consensus       297 ~~~~~~~~~a~~~~~~m~~~~-~~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~----  356 (401)
                      +...|++++|++.|++.++.. -.|+          ...|+.+..+|...|++++|...+++.++.     ...++    
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~   98 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL   98 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence            344555666666655555320 0011          234556666666666666666666665532     11111    


Q ss_pred             -HHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765          357 -FSTMKSLVTGLASISKVAEANELIGLMKKR  386 (401)
Q Consensus       357 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  386 (401)
                       ...+..+..+|...|++++|++.|++..+.
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence             123455667777777777777777776655

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.28  E-value=0.0036  Score=45.38  Aligned_cols=89  Identities=3%  Similarity=-0.043  Sum_probs=42.0

Q ss_pred             HHHhcCCHHHHHHHHHhchhhcCCCCC----------HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCC---
Q 015765          155 GCILSKNYEEVKRIFTEFPKVYGIEPN----------SETYNKVIKSFCESGDSSSVYSILAEMRRK-----SIRPN---  216 (401)
Q Consensus       155 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---  216 (401)
                      .+...|++++|+..|++..+...-.|+          ..+|+.+..+|.+.|++++|.+.+++..+.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344455555555555555432211111          234555555666666666666555554321     01111   


Q ss_pred             --HHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765          217 --ATDFGLLLAGFYKEHKYEDVGKVLQMM  243 (401)
Q Consensus       217 --~~~~~~ll~~~~~~~~~~~a~~~~~~~  243 (401)
                        ...+..+..+|...|++++|...|++.
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence              112344455555555555555555554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.00  E-value=0.021  Score=38.38  Aligned_cols=64  Identities=11%  Similarity=0.080  Sum_probs=38.5

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 015765          289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW  353 (401)
Q Consensus       289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  353 (401)
                      .++..+....+.|+-++-.++++++.+.+ ++++.....+..+|-+.|...++.+++.++.+.|+
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            34444555566666666666666655543 56666666666666666666666666666666664

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.79  E-value=0.034  Score=37.39  Aligned_cols=141  Identities=12%  Similarity=0.114  Sum_probs=83.5

Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhH
Q 015765          121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS  200 (401)
Q Consensus       121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (401)
                      +.-.|..++..+++.+....   .+..-||.+|.-....-+-+-..++++.+-+-+.+.|              .++...
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence            34567777777777777653   3555666677666666777777777776644332211              233333


Q ss_pred             HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765          201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS  280 (401)
Q Consensus       201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  280 (401)
                      ....+-.+     ..+...+...++...+.|+-++..++++.+.+.+ +++....-.+..+|.+.|+..++.+++.+.-+
T Consensus        75 vv~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          75 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33333222     1133445555666666777777777777665543 55566666667777777777777777777766


Q ss_pred             CCCC
Q 015765          281 RGIK  284 (401)
Q Consensus       281 ~~~~  284 (401)
                      .|++
T Consensus       149 ~G~K  152 (161)
T d1wy6a1         149 KGEK  152 (161)
T ss_dssp             TTCH
T ss_pred             HhHH
Confidence            6654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.75  E-value=0.034  Score=38.64  Aligned_cols=80  Identities=11%  Similarity=0.089  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCH
Q 015765          267 RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ----GGEY  338 (401)
Q Consensus       267 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~  338 (401)
                      +.++|.+.+++..+.|   +...+..|...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+.
T Consensus        38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence            4444445554444443   22333333333322    234555555555555543   22223333333332    2355


Q ss_pred             HHHHHHHHHHHHCC
Q 015765          339 ETALKVCRASMAKG  352 (401)
Q Consensus       339 ~~a~~~~~~~~~~~  352 (401)
                      ++|.+++++..+.|
T Consensus       112 ~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         112 KQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            56666666655555

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.57  E-value=0.059  Score=37.33  Aligned_cols=79  Identities=6%  Similarity=-0.080  Sum_probs=33.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCC
Q 015765          301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ----GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS----ISK  372 (401)
Q Consensus       301 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  372 (401)
                      .+.++|.+++++..+.|   +......+...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34445555555544433   22223333333322    234455555555555444   22233333333332    234


Q ss_pred             HHHHHHHHHHHHh
Q 015765          373 VAEANELIGLMKK  385 (401)
Q Consensus       373 ~~~a~~~~~~~~~  385 (401)
                      .++|.+++++..+
T Consensus       111 ~~~A~~~~~~Aa~  123 (133)
T d1klxa_         111 EKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.96  E-value=0.024  Score=36.08  Aligned_cols=48  Identities=13%  Similarity=0.164  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765          340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF  387 (401)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  387 (401)
                      ++.+-++.+....+.|++.+..+-+++|.+.+++..|.++++.++.+.
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~   71 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   71 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            344444444444445555555555555555555555555555554443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.059  Score=36.45  Aligned_cols=73  Identities=8%  Similarity=0.094  Sum_probs=46.7

Q ss_pred             CCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765          320 PDSYCFFMFTYFLCQGG---EYETALKVCRASMAKGWVPH-FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDM  393 (401)
Q Consensus       320 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  393 (401)
                      +...+-.....++.+..   +.++++.++++..+.+ +.+ ...+..|.-+|.+.|++++|.+.++.+++..|.|...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            44445555555555543   4557777777776643 223 2455667777778888888888888888777776543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.81  Score=38.92  Aligned_cols=182  Identities=9%  Similarity=-0.055  Sum_probs=118.3

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHhHHHH----HHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015765          196 GDSSSVYSILAEMRRKSIRPNATDFGLL----LAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA  271 (401)
Q Consensus       196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  271 (401)
                      .+.+.+..++....... ..+...+..+    .......+..+.+...+......+  .+.....-.+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence            57778888888776543 2222222222    223334566677777777666553  2344444455556677899999


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC------------CCCCC----------Hhh-----
Q 015765          272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG------------GCEPD----------SYC-----  324 (401)
Q Consensus       272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~~~----------~~~-----  324 (401)
                      ...+..|... ..-...-..-+.+++...|+.+.|...|......            |.+++          ...     
T Consensus       305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~  383 (450)
T d1qsaa1         305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP  383 (450)
T ss_dssp             HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred             HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence            9888877543 2223455567788888999999999988876542            11110          000     


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765          325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK  384 (401)
Q Consensus       325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  384 (401)
                      -..-+..+...|....|...|..+...   .+......+.....+.|.++.|+.......
T Consensus       384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            012345677889999999999888754   256677788888899999999998776653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.32  E-value=3.6  Score=34.64  Aligned_cols=319  Identities=8%  Similarity=-0.028  Sum_probs=175.4

Q ss_pred             hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHH--hCCCchHHHHHHHHhhhCCCCCCchhHHHH
Q 015765           39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLS--QANHFNAISQLLEELKTRPDLRQNERFHVH  116 (401)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  116 (401)
                      +..+..+.+.+ ..++...+..+......   +|.-  .|-.....-.  ......++..+++.   .|+.|........
T Consensus         7 r~~y~~a~~a~-~~~~~~~~~~~~~~L~d---ypL~--pYl~~~~l~~~~~~~~~~~i~~Fl~~---~p~~P~~~~lr~~   77 (450)
T d1qsaa1           7 RSRYAQIKQAW-DNRQMDVVEQMMPGLKD---YPLY--PYLEYRQITDDLMNQPAVTVTNFVRA---NPTLPPARTLQSR   77 (450)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHSGGGTT---STTH--HHHHHHHHHHTGGGCCHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HCCCHHHHHHHHhhhcC---CCCH--HHHHHHHHHhccccCCHHHHHHHHHH---CCCChhHHHHHHH
Confidence            34455555544 45567778887777632   3322  2332222222  23455555555444   6666665555566


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015765          117 SIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG  196 (401)
Q Consensus       117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  196 (401)
                      .+....+.++++..+..+.     ..+.+...-.....+....|+.+.|...+..+-....  .....+..+...+.+.|
T Consensus        78 ~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~--~~p~~c~~l~~~~~~~~  150 (450)
T d1qsaa1          78 FVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK--SQPNACDKLFSVWRASG  150 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS--CCCTHHHHHHHHHHHTT
T ss_pred             HHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCchHHHHHHHHHHhcC
Confidence            6777888888877554442     1245666666778888889999988888776644322  22334555555555554


Q ss_pred             ChhHH--HHHHHHHHhCC-----------CCCCH-HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 015765          197 DSSSV--YSILAEMRRKS-----------IRPNA-TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL  262 (401)
Q Consensus       197 ~~~~a--~~~~~~~~~~~-----------~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  262 (401)
                      .+...  .+-+..+...|           ++++. ......+.....   ...+..   ....  ...+......+..++
T Consensus       151 ~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~---~~~~--~~~~~~~~~~~~~~l  222 (450)
T d1qsaa1         151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLT---FART--TGATDFTRQMAAVAF  222 (450)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHH---HHHH--SCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHH---HHhc--CCCChhhhHHHHHHH
Confidence            43221  12222222222           11111 111222221111   111111   1111  122333333333333


Q ss_pred             Hh--cCCHHHHHHHHHHHHHCCCCcCHHHHH----HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 015765          263 CK--LKRSEEAKALLDGMLSRGIKPNLDTYK----HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG  336 (401)
Q Consensus       263 ~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  336 (401)
                      .+  ..+.+.+..++......... +...+.    .+.......+..+.+...+......+  .+.......+......+
T Consensus       223 ~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~  299 (450)
T d1qsaa1         223 ASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTG  299 (450)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHT
T ss_pred             HHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcC
Confidence            33  35788888888887664322 222222    22233345667788888887777653  34444455566667789


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765          337 EYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK  385 (401)
Q Consensus       337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  385 (401)
                      ++..+...+..|-.. ......-.--+..++...|+.++|...|....+
T Consensus       300 ~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         300 DRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             CHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            999999999877543 233455567788999999999999999998865

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.89  E-value=1.4  Score=27.74  Aligned_cols=50  Identities=14%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015765          126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV  175 (401)
Q Consensus       126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  175 (401)
                      +.=++.+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-+...
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            33455555666666666677777777777777777777777777666443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.50  E-value=2  Score=28.69  Aligned_cols=46  Identities=15%  Similarity=0.138  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765          269 EEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTN  315 (401)
Q Consensus       269 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~  315 (401)
                      ++++.+|+++.+.+. .+ ...+.-|.-+|.+.|++++|.+.++.+++
T Consensus        55 ~~gI~lLe~~~~~~p-~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          55 RLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            345555554444321 11 12333344444455555555555555554