Citrus Sinensis ID: 015801


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400
MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLGSGEIIVDDMKYTVSHVVEPVERGIAKINKTFHQISENVKRHEKERKRSSKDDSYLIPLNSWTREFSEVQDHIPEGSFSDSSISNGKRQHYQSKASRTKGG
cccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHcccccccHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEEHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHcHccccccccHHHcccccccEEEEEcccccccccccEccccEEEEEccccEEEEcEEEEHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccEEccccccccccccccccccccccccccccccccccc
MVPVYALESFLSLLnsdaafncEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESqtiistssplleesytfgvvehpcplncilrdwrlgpefynAVKIGIVQYMILKMICALLAMILQTFgvygegkfewkygyPYLAVVLNFSQTWALYCLVQFYsvtkdklepikplakfltfksIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYvfparpykrgercvRNVAVMTdyaslgtppdpeevkdseRTTKMRIARHDErekrlnfpqsvrDVVLGSGEIIVDDMKYTVSHVVEPVERGIAKINKTFHQISENVKRHEKerkrsskddsyliplnswtREFSEvqdhipegsfsdssisngkrqhyqskasrtkgg
MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMtdyaslgtppdpeevkdserTTKMRiarhderekrlnfpqsvrdvvlgsgeiivddmkYTVSHVVEPVERGIAKINKtfhqisenvkrhekerkrsskddsyliplNSWTREFSEVQDHIPEgsfsdssisngkrqhyqskasrtkgg
MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLGSGEIIVDDMKYTVSHVVEPVERGIAKINKTFHQISENVkrhekerkrsskDDSYLIPLNSWTREFSEVQDHIPEGSFSDSSISNGKRQHYQSKASRTKGG
***VYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYA************************************SVRDVVLGSGEIIVDDMKYTVSHVVEPVERGIAKINKTFHQ*********************LIPLNSW***************************************
MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHD**********************************************************************************************************************
MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGT************TTKMRIARHDEREKRLNFPQSVRDVVLGSGEIIVDDMKYTVSHVVEPVERGIAKINKTFHQISE***************DSYLIPLNSWTREFSEVQDHIPEGSF***********************
MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLGSGEIIVDDMKYTVSHVVEPVERGIAKINKTFHQISENVKRHEKE********SY*IPLNSWTREFSEVQDHIP***************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLGSGEIIVDDMKYTVSHVVEPVERGxxxxxxxxxxxxxxxxxxxxxRKRSSKDDSYLIPLNSWTREFSEVQDHIPEGSFSDSSISNGKRQHYQSKASRTKGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query400 2.2.26 [Sep-21-2011]
Q6GQE1444 Transmembrane protein 184 N/A no 0.647 0.583 0.322 3e-38
Q28CV2443 Transmembrane protein 184 yes no 0.647 0.584 0.319 7e-38
Q5ZMP3445 Transmembrane protein 184 yes no 0.695 0.624 0.294 9e-36
Q9NVA4438 Transmembrane protein 184 yes no 0.642 0.586 0.298 1e-35
Q810F5503 Transmembrane protein 184 yes no 0.557 0.443 0.334 2e-35
Q5RET6438 Transmembrane protein 184 yes no 0.642 0.586 0.298 2e-35
Q3TPR7525 Transmembrane protein 184 no no 0.557 0.424 0.334 1e-34
Q54WM0351 Transmembrane protein 184 yes no 0.567 0.646 0.348 1e-34
Q17QL9438 Transmembrane protein 184 yes no 0.555 0.506 0.308 2e-34
Q54PI4493 Transmembrane protein 184 no no 0.552 0.448 0.320 8e-30
>sp|Q6GQE1|T184C_XENLA Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1 Back     alignment and function desciption
 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 150/285 (52%), Gaps = 26/285 (9%)

Query: 1   MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEF-MESQT 59
           MVP+Y+++S+++L   D A   +  R+CYEA+ +Y F  +L+  L      +   +E++ 
Sbjct: 87  MVPIYSVDSWIALKYPDIAIYVDTCRECYEAYVIYNFMIFLLNYLTNRCPNLALVLEAKD 146

Query: 60  IISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAM 119
                 PL                 C    W +G       K+G++QY +++ +  ++A+
Sbjct: 147 QQRHLPPL-----------------CCCPPWAMGDVLLFRCKLGVLQYTVVRPVTTVIAL 189

Query: 120 ILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTF 179
           I Q  GVYGEG F  K  + YL ++ N SQ +A+YCLV FY V K++L PI+P+ KFL  
Sbjct: 190 ICQLTGVYGEGDFSVKNAWTYLVIINNVSQVFAMYCLVLFYKVLKEELNPIQPVGKFLCV 249

Query: 180 KSIVFLTWWQGIIVAFLFSIGAFRGSL----AQELKTRIQDYIICIEMGIAAVVHLYVFP 235
           K +VF+++WQ + +A L   G    +      Q++ T +QD+IIC+EM +AAV H Y F 
Sbjct: 250 KMVVFVSFWQAVFIAILVKAGVISNTWEWKRVQDVATGLQDFIICVEMFLAAVAHHYSFT 309

Query: 236 ARPYKRGER---CVRNVAVMTDYASLGTPPDPEEVKDSERTTKMR 277
            +PY +      C  +   M D + +      E+V++  RT   R
Sbjct: 310 YKPYVQEAEEGSCFDSFLAMWDISDIRADIS-EQVRNVGRTVLGR 353




May play a role in cell growth.
Xenopus laevis (taxid: 8355)
>sp|Q28CV2|T184C_XENTR Transmembrane protein 184C OS=Xenopus tropicalis GN=tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q5ZMP3|T184C_CHICK Transmembrane protein 184C OS=Gallus gallus GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q9NVA4|T184C_HUMAN Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=2 Back     alignment and function description
>sp|Q810F5|T184C_RAT Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q5RET6|T184C_PONAB Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q3TPR7|T184C_MOUSE Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1 Back     alignment and function description
>sp|Q54WM0|T1843_DICDI Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum GN=tmem184C PE=3 SV=1 Back     alignment and function description
>sp|Q17QL9|T184C_BOVIN Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1 Back     alignment and function description
>sp|Q54PI4|T1841_DICDI Transmembrane protein 184 homolog DDB_G0284525 OS=Dictyostelium discoideum GN=tmem184A PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
225457753483 PREDICTED: transmembrane protein 184C [V 0.992 0.821 0.839 0.0
224082402484 predicted protein [Populus trichocarpa] 0.997 0.824 0.838 0.0
255570390484 conserved hypothetical protein [Ricinus 0.997 0.824 0.840 0.0
449462168485 PREDICTED: transmembrane protein 184C-li 0.992 0.818 0.819 0.0
224066743479 predicted protein [Populus trichocarpa] 0.98 0.818 0.834 0.0
356518603485 PREDICTED: transmembrane protein 184C-li 0.995 0.820 0.812 0.0
297839581484 hypothetical protein ARALYDRAFT_895607 [ 0.982 0.811 0.820 0.0
18411404484 uncharacterized protein [Arabidopsis tha 0.982 0.811 0.805 0.0
147774899479 hypothetical protein VITISV_035027 [Viti 0.99 0.826 0.745 0.0
356546607484 PREDICTED: transmembrane protein 184C-li 0.987 0.816 0.783 0.0
>gi|225457753|ref|XP_002278084.1| PREDICTED: transmembrane protein 184C [Vitis vinifera] gi|302142772|emb|CBI19975.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/398 (83%), Positives = 373/398 (93%), Gaps = 1/398 (0%)

Query: 1   MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTI 60
           MVPVYALESFLSLL+S+AAFNC++IRDCYEAFALYCFERYLIACLGGE+ T+EFMESQ +
Sbjct: 83  MVPVYALESFLSLLDSNAAFNCQIIRDCYEAFALYCFERYLIACLGGEKSTVEFMESQRL 142

Query: 61  ISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMI 120
           I  S+PLLEE+YT+G+VEHP PLN  LR+W LG +FY AVK+GIVQYMILKMICALLA+ 
Sbjct: 143 IDCSTPLLEEAYTYGIVEHPFPLNFFLREWYLGRDFYQAVKVGIVQYMILKMICALLAIF 202

Query: 121 LQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFK 180
           L+  GVYGEGKFEW+YGYPYLAVVLNFSQTWALYCLVQFY+VTKDKLEPIKPLAKFL FK
Sbjct: 203 LEFLGVYGEGKFEWRYGYPYLAVVLNFSQTWALYCLVQFYTVTKDKLEPIKPLAKFLVFK 262

Query: 181 SIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYK 240
           SIVFLTWWQG+ VAFLFSIGAF+GSLAQELKTRIQDYIICIEMG+AAVVHLYVFPA PY+
Sbjct: 263 SIVFLTWWQGVAVAFLFSIGAFKGSLAQELKTRIQDYIICIEMGVAAVVHLYVFPAVPYQ 322

Query: 241 RGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLG 300
           RGERCVRNVAVM DYASL TPPDPEEV+D ER+T++R+ARHDEREKRLNFPQSVRDVVLG
Sbjct: 323 RGERCVRNVAVMADYASLDTPPDPEEVRDCERSTRIRLARHDEREKRLNFPQSVRDVVLG 382

Query: 301 SGEIIVDDMKYTVSHVVEPVERGIAKINKTFHQISENVKRHEKERKRSSKDDSYLIPLNS 360
           SGEIIVDDMK+TVSHVVEPVERGIAKINKTFHQISENVKRHE ERKR++KDDSY+IPLNS
Sbjct: 383 SGEIIVDDMKFTVSHVVEPVERGIAKINKTFHQISENVKRHE-ERKRNAKDDSYVIPLNS 441

Query: 361 WTREFSEVQDHIPEGSFSDSSISNGKRQHYQSKASRTK 398
           WTREFSEV D++ EGS SDS +S+GKRQHYQ+KA+ ++
Sbjct: 442 WTREFSEVHDNLVEGSISDSGLSSGKRQHYQTKATASR 479




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082402|ref|XP_002306680.1| predicted protein [Populus trichocarpa] gi|222856129|gb|EEE93676.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255570390|ref|XP_002526154.1| conserved hypothetical protein [Ricinus communis] gi|223534531|gb|EEF36230.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449462168|ref|XP_004148813.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] gi|449518376|ref|XP_004166218.1| PREDICTED: transmembrane protein 184C-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224066743|ref|XP_002302193.1| predicted protein [Populus trichocarpa] gi|222843919|gb|EEE81466.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518603|ref|XP_003527968.1| PREDICTED: transmembrane protein 184C-like [Glycine max] Back     alignment and taxonomy information
>gi|297839581|ref|XP_002887672.1| hypothetical protein ARALYDRAFT_895607 [Arabidopsis lyrata subsp. lyrata] gi|297333513|gb|EFH63931.1| hypothetical protein ARALYDRAFT_895607 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18411404|ref|NP_565152.1| uncharacterized protein [Arabidopsis thaliana] gi|14334724|gb|AAK59540.1| unknown protein [Arabidopsis thaliana] gi|21280885|gb|AAM44904.1| unknown protein [Arabidopsis thaliana] gi|332197830|gb|AEE35951.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147774899|emb|CAN77212.1| hypothetical protein VITISV_035027 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356546607|ref|XP_003541716.1| PREDICTED: transmembrane protein 184C-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query400
TAIR|locus:2196005484 AT1G77220 "AT1G77220" [Arabido 0.982 0.811 0.792 3.4e-171
TAIR|locus:2121763485 LAZ1 "AT4G38360" [Arabidopsis 0.995 0.820 0.529 6.6e-113
TAIR|locus:2201235403 AT1G23070 "AT1G23070" [Arabido 0.79 0.784 0.439 3.7e-71
DICTYBASE|DDB_G0279555351 tmem184C "transmembrane protei 0.432 0.492 0.361 1.5e-37
UNIPROTKB|Q5ZMP3445 TMEM184C "Transmembrane protei 0.757 0.680 0.296 4.9e-37
UNIPROTKB|Q9NVA4438 TMEM184C "Transmembrane protei 0.645 0.589 0.309 2.7e-36
UNIPROTKB|A5D9H3470 TMEM34 "Transmembrane protein 0.64 0.544 0.308 1.2e-35
UNIPROTKB|Q17QL9438 TMEM184C "Transmembrane protei 0.64 0.584 0.308 1.2e-35
RGD|727852503 Tmem184c "transmembrane protei 0.645 0.512 0.316 1.2e-35
MGI|MGI:2384562525 Tmem184c "transmembrane protei 0.645 0.491 0.316 4e-35
TAIR|locus:2196005 AT1G77220 "AT1G77220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1664 (590.8 bits), Expect = 3.4e-171, P = 3.4e-171
 Identities = 314/396 (79%), Positives = 351/396 (88%)

Query:     1 MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTI 60
             MVPVYA+ESFLSL+NS+AAFNCEVIRDCYEAFALYCFERYLIACL GEERTIEFME QT+
Sbjct:    83 MVPVYAVESFLSLVNSEAAFNCEVIRDCYEAFALYCFERYLIACLDGEERTIEFMEQQTV 142

Query:    61 ISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMI 120
             I+ S+PLLE + ++GVVEHP P+NC ++DW LGP+FY+AVKIGIVQYMILKMICALLAMI
Sbjct:   143 ITQSTPLLEGTCSYGVVEHPFPMNCFVKDWSLGPQFYHAVKIGIVQYMILKMICALLAMI 202

Query:   121 LQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFK 180
             L+ FGVYGEGKF W YGYPYLAVVLNFSQTWALYCLVQFY+V KDKL PIKPLAKFLTFK
Sbjct:   203 LEAFGVYGEGKFAWNYGYPYLAVVLNFSQTWALYCLVQFYNVIKDKLAPIKPLAKFLTFK 262

Query:   181 SIVFLTWWQGIIVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIAAVVHLYVFPARPYK 240
             SIVFLTWWQGIIVAFLFS+G  +GSLA+ELKTRIQDYIICIEMGIAAVVHLYVFPA PYK
Sbjct:   263 SIVFLTWWQGIIVAFLFSMGLVKGSLAKELKTRIQDYIICIEMGIAAVVHLYVFPAAPYK 322

Query:   241 RGERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKRLNFPQSVRDVVLG 300
             RGERCVRNVAVM+DYAS+  PPDPEEVKDSERTT+ R  RHD+REKRLNFPQSVRDVVLG
Sbjct:   323 RGERCVRNVAVMSDYASIDVPPDPEEVKDSERTTRTRYGRHDDREKRLNFPQSVRDVVLG 382

Query:   301 SGEIIVDDMKYTVSHVVEPVERGIAKINKTFHQISENVXXXXXXXXXXXXDDSYLIPLNS 360
             SGEIIVDDM++TVSHVVEPVERGIAKIN+TFHQISENV            DDSY+IPLN 
Sbjct:   383 SGEIIVDDMRFTVSHVVEPVERGIAKINRTFHQISENVKRFEQQKKTTK-DDSYVIPLNQ 441

Query:   361 WTREFSEVQDHIPEG-SFSDSSISNGKRQHYQSKAS 395
             W +EFS+V +++ +G S SDS + +  R H+QS+ S
Sbjct:   442 WAKEFSDVHENLYDGGSVSDSGLGSTNR-HHQSRVS 476




GO:0008150 "biological_process" evidence=ND
TAIR|locus:2121763 LAZ1 "AT4G38360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201235 AT1G23070 "AT1G23070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279555 tmem184C "transmembrane protein 184C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMP3 TMEM184C "Transmembrane protein 184C" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVA4 TMEM184C "Transmembrane protein 184C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A5D9H3 TMEM34 "Transmembrane protein 34" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QL9 TMEM184C "Transmembrane protein 184C" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|727852 Tmem184c "transmembrane protein 184C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2384562 Tmem184c "transmembrane protein 184C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query400
pfam03619272 pfam03619, Solute_trans_a, Organic solute transpor 1e-112
>gnl|CDD|217643 pfam03619, Solute_trans_a, Organic solute transporter Ostalpha Back     alignment and domain information
 Score =  329 bits (847), Expect = e-112
 Identities = 114/242 (47%), Positives = 150/242 (61%), Gaps = 17/242 (7%)

Query: 1   MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTI 60
           MVP+YA+ SFLSLL   AA   ++IRDCYEAF +Y F   LIA LGGE   I  +E +  
Sbjct: 45  MVPIYAVISFLSLLFPKAAIYFDLIRDCYEAFVIYTFFSLLIAYLGGERNIIRLLEGKPP 104

Query: 61  ISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMI 120
           I    PLL                C+LR  R  P F+   K G++QY+++K +CA+LA+I
Sbjct: 105 IRHPFPLLT--------------KCLLRTDRSDPTFFLRCKRGVLQYVVVKPLCAILAII 150

Query: 121 LQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFK 180
           LQ FGVYGEG F    GY YL ++ N S + ALYCLV FY   KD+L P KPL KFL  K
Sbjct: 151 LQAFGVYGEGSFSPDSGYLYLTIIYNISVSLALYCLVLFYKALKDELAPFKPLLKFLCIK 210

Query: 181 SIVFLTWWQGIIVAFLFSIGAFRGSLAQ---ELKTRIQDYIICIEMGIAAVVHLYVFPAR 237
            I+F ++WQG++++ L S+G  + + A    EL   IQ+++ICIEM I A+ HLY FP +
Sbjct: 211 LIIFFSFWQGVLISILVSLGLIKPTEAWEEPELSAGIQNFLICIEMFIFAIAHLYAFPYK 270

Query: 238 PY 239
           PY
Sbjct: 271 PY 272


This family is a transmembrane organic solute transport protein. In vertebrates these proteins form a complex with Ostbeta, and function as bile transporters. In plants they may transport brassinosteroid-like compounds and act as regulators of cell death. Length = 272

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 400
KOG2641386 consensus Predicted seven transmembrane receptor - 100.0
PF03619274 Solute_trans_a: Organic solute transporter Ostalph 100.0
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms] Back     alignment and domain information
Probab=100.00  E-value=1e-66  Score=524.50  Aligned_cols=275  Identities=40%  Similarity=0.686  Sum_probs=247.0

Q ss_pred             CcchhhHHhHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhhhccccCCCchhhhhccCCccccC
Q 015801            1 MVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHP   80 (400)
Q Consensus         1 MVPIYAi~S~lSL~~P~~aiy~d~iRdcYEAfvIYsFf~LLi~yLGGe~~~i~~L~~~~~~~~~~p~l~~~~~~~~~~h~   80 (400)
                      |+||||+.||+||+.|++++|++++||||||||||+|++||++|+|||++++..++++.               .+.+|+
T Consensus        77 mvPIys~~S~vsl~~p~~~~~~~~vr~~Yeaf~ly~F~sLl~~ylGGe~~~v~~l~~~~---------------~~~~~~  141 (386)
T KOG2641|consen   77 MVPIYSVASFVSLLVPRVAFYLDTVRECYEAFVLYVFLSLLFHYLGGEQNIVTELEGRL---------------IRVNHT  141 (386)
T ss_pred             hhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHhccC---------------CcccCC
Confidence            89999999999999999999999999999999999999999999999999999887632               125789


Q ss_pred             ccccccccccc-CChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHhccccCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 015801           81 CPLNCILRDWR-LGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQF  159 (400)
Q Consensus        81 ~P~~ccl~p~~-lg~~fl~~cK~gVLQYvIvKPl~ailaiIle~~GvY~eg~~s~~~aylyl~iI~niS~~lALY~Lv~F  159 (400)
                      +|+|||+||+. +++.++++||+||+||+|+||++++++++++++|.|++|++++   |+|+++++|+|+++|||||.+|
T Consensus       142 ~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~f  218 (386)
T KOG2641|consen  142 PPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKPFLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLF  218 (386)
T ss_pred             CCceeccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHH
Confidence            99998888775 8999999999999999999999999999999999999999998   8999999999999999999999


Q ss_pred             HHHhhhhcCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCc---HHHHHHHhhhhHHHHHHHHHHHHHhhcccC
Q 015801          160 YSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVAFLFSIGAFRGSL---AQELKTRIQDYIICIEMGIAAVVHLYVFPA  236 (400)
Q Consensus       160 Y~atke~L~p~kPl~KFl~IK~VVFltfwQ~viIaiL~~~Gvi~~~~---~~~i~~~iqd~LICiEM~i~AIlh~~aFp~  236 (400)
                      |++++++|.|++|++||+|+|+|||++||||+++++|...|.+++..   .+..+.++||++||+||+++|++|+||||+
T Consensus       219 y~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~vi~~l~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~  298 (386)
T KOG2641|consen  219 YTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIVLAILVKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPA  298 (386)
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999998543   357899999999999999999999999999


Q ss_pred             ccccCC-CccccceeeeeecccCCCCCCccccccccccccccccccCccccc--ccCCcccceeEec
Q 015801          237 RPYKRG-ERCVRNVAVMTDYASLGTPPDPEEVKDSERTTKMRIARHDEREKR--LNFPQSVRDVVLG  300 (400)
Q Consensus       237 kpY~~~-~~~~~~~~~~~d~~~~~~~~d~~ev~~~~~~~~~~~~~~~~~~~~--~~~~~s~~d~~~~  300 (400)
                      +||... ++..       |+.+.|.....+.++++.+|+.........-+++  ...++|.||+..+
T Consensus       299 ~~ya~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  358 (386)
T KOG2641|consen  299 APYALFDERSC-------DYRSVDMFSISSSLWDSLMPNDLCSDAIRNFSPTYQDYTPQSDQDALSA  358 (386)
T ss_pred             chhcccccccc-------ccccccccccchHHHHhhcccCcccccccCCCcccccccccccCccccC
Confidence            999883 3321       6667777777788888888887776643333333  8889999998876



>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00